Query 031072
Match_columns 166
No_of_seqs 109 out of 354
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 13:52:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ydu_A AT5G01610; DUF538, stru 100.0 3.4E-43 1.1E-47 282.7 7.0 118 24-146 47-167 (170)
2 3hg9_A PILM; structural genomi 38.0 13 0.00045 28.1 1.6 58 36-96 43-103 (131)
3 2l32_A Small archaeal modifier 25.5 41 0.0014 22.4 2.3 19 25-43 17-35 (74)
4 2nzc_A Hypothetical protein; s 22.7 20 0.00068 25.3 0.2 17 88-104 66-82 (86)
5 3qth_A Uncharacterized protein 21.7 37 0.0013 26.7 1.6 15 29-43 144-158 (176)
6 2oqm_A Hypothetical protein; s 16.7 46 0.0016 26.6 1.2 15 29-43 163-177 (192)
7 2npb_A Selenoprotein W; struct 16.2 1.1E+02 0.0037 21.5 3.0 32 31-69 23-57 (96)
8 3dex_A SAV_2001; alpha-beta pr 14.3 1.9E+02 0.0065 20.9 3.9 30 31-67 33-64 (107)
9 3kf6_B Protein TEN1; OB fold, 14.0 1.6E+02 0.0056 21.4 3.4 47 49-106 30-85 (105)
10 1ulr_A Putative acylphosphatas 14.0 1.1E+02 0.0038 20.6 2.5 20 48-67 29-49 (88)
No 1
>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1
Probab=100.00 E-value=3.4e-43 Score=282.70 Aligned_cols=118 Identities=22% Similarity=0.459 Sum_probs=111.2
Q ss_pred cCCCCCcHHHHHHhCCCCCCCCCCCceeeEeC-CCceEEEEEcCceEEEec--ceEEEccEEEEEEecCeeeccccceEE
Q 031072 24 PLTATSSLKNLLESRGLPGGLFPENVKSYNLD-QNGRLEVYLEGPCMAKFD--TRVLFDSVVRANLSYGGLVGLEGLTQE 100 (166)
Q Consensus 24 ~~~~~~ta~elL~~~gLP~GLLP~~V~~Y~l~-~tG~f~V~l~~~C~~~f~--~~v~Y~~~ItG~i~~GkI~~L~GVk~K 100 (166)
...+.+++||+|++||||+||||++|++|++| +||+|||+|+++|+|+|+ ++|+|+++|||+|++|+|++|+|||+|
T Consensus 47 kg~~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~tG~f~V~l~~~C~~~f~~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K 126 (170)
T 1ydu_A 47 KGKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTK 126 (170)
T ss_dssp TTTTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEE
T ss_pred cccccccHHHHHHHcCCCCCcCCCCCeEEEEECCCcEEEEEeCCCEEEEecCccEEEEcCEEEEEEcCCcCccccCEEEE
Confidence 34667999999999999999999999999998 579999999999999996 699999999999999999999999999
Q ss_pred EEEeecceeEEEecCCCCCeEEEEEceeeeeecccccCCCCCCCcc
Q 031072 101 ELFLWLPVKGIIVNDPSSGLILIDIGLARKQLSLSLFEDPPVCKHI 146 (166)
Q Consensus 101 ~lf~Wv~V~eI~vd~~~~~~I~F~vG~isksFP~s~F~~~p~C~~~ 146 (166)
+| +|++|+||.|+ +++|+|++|+ +++||+++|+.+|+|..+
T Consensus 127 ~L-lWv~V~eI~v~---~~kI~F~vGi-~ksfp~saFe~~~~c~~~ 167 (170)
T 1ydu_A 127 VM-IWVKVTSISTD---ASKVYFTAGM-KKSRSRDAYGVQRNGLRV 167 (170)
T ss_dssp SS-SEESCCCBEEC---SSSEECTTSS-SSCCCHHHHSSCCCCCCT
T ss_pred EE-EEeeEEEEEEe---CCEEEEEEcC-cccccHHHhcCCcCCccc
Confidence 99 99999999993 6899999995 999999999999999874
No 2
>3hg9_A PILM; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, P protein, unknown function; 2.40A {Pseudomonas aeruginosa}
Probab=37.99 E-value=13 Score=28.11 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=42.3
Q ss_pred HhCCCCCCCCCC-CceeeEeCCCceEEEEEcCceEEEec--ceEEEccEEEEEEecCeeecccc
Q 031072 36 ESRGLPGGLFPE-NVKSYNLDQNGRLEVYLEGPCMAKFD--TRVLFDSVVRANLSYGGLVGLEG 96 (166)
Q Consensus 36 ~~~gLP~GLLP~-~V~~Y~l~~tG~f~V~l~~~C~~~f~--~~v~Y~~~ItG~i~~GkI~~L~G 96 (166)
.+.|||.+..|. +++.|. +.|.+||+...++.--.. ....=++ .-|..+.|+|..-.|
T Consensus 43 a~L~lP~wy~~~~~i~~~I--~~Gr~yV~~~~~~pgL~aaL~~~t~~S-l~G~~~~G~Lv~p~g 103 (131)
T 3hg9_A 43 SALGLPAWFRKPVRLQGYI--AAGTSYAFIASPPAGLAAAVDTGTESD-LVGVRRNGQLVTRRL 103 (131)
T ss_dssp TTTTCCSSCCCCTTEEEEE--SSSCEEEEESSCCTTHHHHHHHHCCCE-EEEEESSSSEEETTT
T ss_pred HHcCCCcccCCCCCeeEEE--ECCEEEEEecCCCchHHHHHHHhcCcc-eeEEeeCCEEECCCC
Confidence 578899999884 899998 468999988554431111 1223445 889999999998887
No 3
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=25.55 E-value=41 Score=22.38 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=16.0
Q ss_pred CCCCCcHHHHHHhCCCCCC
Q 031072 25 LTATSSLKNLLESRGLPGG 43 (166)
Q Consensus 25 ~~~~~ta~elL~~~gLP~G 43 (166)
.++..|+.|+|+++|+|..
T Consensus 17 v~~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 17 VDDDGTYADLVRAVDLSPH 35 (74)
T ss_dssp CSTTCSHHHHHHTTCCCSS
T ss_pred cCCCCcHHHHHHHcCCCcc
Confidence 4556899999999999964
No 4
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=22.72 E-value=20 Score=25.31 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.3
Q ss_pred cCeeeccccceEEEEEe
Q 031072 88 YGGLVGLEGLTQEELFL 104 (166)
Q Consensus 88 ~GkI~~L~GVk~K~lf~ 104 (166)
.|++.+|+||++|-...
T Consensus 66 ~gkLg~i~GV~vKt~~~ 82 (86)
T 2nzc_A 66 SGKLGQISGVRVKTVPL 82 (86)
T ss_dssp HHHHHTSTTEEEEEEEC
T ss_pred HHHhCCCCCEEEEEEEe
Confidence 48899999999998753
No 5
>3qth_A Uncharacterized protein; DINB/YFIT-like putative metalloenzymes, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.20A {Colwellia psychrerythraea}
Probab=21.67 E-value=37 Score=26.74 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=14.0
Q ss_pred CcHHHHHHhCCCCCC
Q 031072 29 SSLKNLLESRGLPGG 43 (166)
Q Consensus 29 ~ta~elL~~~gLP~G 43 (166)
.|+|.+|+..|.|.|
T Consensus 144 tTAYaILR~~GV~LG 158 (176)
T 3qth_A 144 SMVYAIAKNNGVSVT 158 (176)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhcCCCcC
Confidence 689999999999988
No 6
>2oqm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.83A {Shewanella denitrificans} SCOP: a.213.1.3
Probab=16.68 E-value=46 Score=26.60 Aligned_cols=15 Identities=20% Similarity=0.415 Sum_probs=13.8
Q ss_pred CcHHHHHHhCCCCCC
Q 031072 29 SSLKNLLESRGLPGG 43 (166)
Q Consensus 29 ~ta~elL~~~gLP~G 43 (166)
.|+|.+|+..|.|.|
T Consensus 163 tTAYaILR~~GV~LG 177 (192)
T 2oqm_A 163 TTAYGILRHNGVEVG 177 (192)
T ss_dssp HHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhcCCCCC
Confidence 689999999999988
No 7
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=16.22 E-value=1.1e+02 Score=21.53 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=21.4
Q ss_pred HHHHHHhCCCCCCCCCCCce-eeEeCC--CceEEEEEcCceE
Q 031072 31 LKNLLESRGLPGGLFPENVK-SYNLDQ--NGRLEVYLEGPCM 69 (166)
Q Consensus 31 a~elL~~~gLP~GLLP~~V~-~Y~l~~--tG~f~V~l~~~C~ 69 (166)
+-|+|.++ |..+. +..+.+ +|.|+|+.++.--
T Consensus 23 aqeLl~~F-------p~~l~V~~~l~p~~~G~FEV~vng~lV 57 (96)
T 2npb_A 23 KEKLEHEF-------PGCLDICGEGTPQVTGFFEVTVAGKLV 57 (96)
T ss_dssp HHHHHHHS-------BTTEEEEECCCSSCCSCCEEEETTEEE
T ss_pred HHHHHHhC-------CcceEEEEEEcCCCCcEEEEEECCEEE
Confidence 45667766 55555 666653 4999999977433
No 8
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=14.29 E-value=1.9e+02 Score=20.94 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=21.8
Q ss_pred HHHHHHhCCCCCCCCCCCceeeEeC--CCceEEEEEcCc
Q 031072 31 LKNLLESRGLPGGLFPENVKSYNLD--QNGRLEVYLEGP 67 (166)
Q Consensus 31 a~elL~~~gLP~GLLP~~V~~Y~l~--~tG~f~V~l~~~ 67 (166)
+.|||.++ |..+.+.++. .+|.|+|.+++.
T Consensus 33 aqeLl~tF-------~~~l~eVsL~Pg~gG~FeV~vdg~ 64 (107)
T 3dex_A 33 AQELLTTF-------ETELTELALKPGTGGVFVVRVDDE 64 (107)
T ss_dssp HHHHHHHS-------TTTEEEEEEEEESSSCEEEEETTE
T ss_pred HHHHHHhc-------ccccceEEEEeCCCceEEEEECCE
Confidence 56778776 4556677775 359999998764
No 9
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A
Probab=13.99 E-value=1.6e+02 Score=21.42 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=29.2
Q ss_pred ceeeEeCCCceEEEEEcCceEEEec------c-eEEEc--cEEEEEEecCeeeccccceEEEEEeec
Q 031072 49 VKSYNLDQNGRLEVYLEGPCMAKFD------T-RVLFD--SVVRANLSYGGLVGLEGLTQEELFLWL 106 (166)
Q Consensus 49 V~~Y~l~~tG~f~V~l~~~C~~~f~------~-~v~Y~--~~ItG~i~~GkI~~L~GVk~K~lf~Wv 106 (166)
|++|. ||.+.+.- ..-.+..+ . .++=. -+|=|||..+ |.++.+++|-
T Consensus 30 V~sY~---tg~L~Le~-~~~~v~VDV~lvL~~l~~~vGeWvNVvGYir~~-------v~VqAl~lws 85 (105)
T 3kf6_B 30 VQSYK---NGILRLID-GSSSVTCDVTVVLPDVSIQKHEWLNIVGRKRQD-------GIVDVLLIRS 85 (105)
T ss_dssp EEEEE---TTEEEEEE-TTEEEEEECTTSCCSSCCCTTCEEEEEEEEEET-------TEEEEEEEEE
T ss_pred eeeec---cEEEEEcc-CCcEEEEEHHHhhchheeecccEEEEEEEEecC-------cEEEEEEEee
Confidence 77888 89998883 22222221 1 11111 2567888884 9999999994
No 10
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=13.98 E-value=1.1e+02 Score=20.64 Aligned_cols=20 Identities=40% Similarity=0.787 Sum_probs=16.5
Q ss_pred CceeeEeC-CCceEEEEEcCc
Q 031072 48 NVKSYNLD-QNGRLEVYLEGP 67 (166)
Q Consensus 48 ~V~~Y~l~-~tG~f~V~l~~~ 67 (166)
++++|..| ++|.+++...++
T Consensus 29 gl~G~V~N~~dG~Vei~~eG~ 49 (88)
T 1ulr_A 29 GLSGYAENLPDGRVEVVAEGP 49 (88)
T ss_dssp TCEEEEEECTTSCEEEEEESC
T ss_pred CCeEEEEECCCCcEEEEEEeC
Confidence 57889888 579999988776
Done!