Query 031073
Match_columns 166
No_of_seqs 185 out of 1661
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 13:53:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl2_A V-type sodium ATP synth 100.0 1.4E-36 4.9E-41 237.3 18.9 148 9-159 8-155 (156)
2 2xqu_A C15_RING, ATP synthase 99.7 6.7E-17 2.3E-21 113.7 10.5 74 89-162 4-81 (82)
3 1wu0_A ATP synthase C chain; A 99.7 2.2E-16 7.5E-21 108.5 8.6 67 93-159 2-72 (72)
4 2wgm_A ATP synthase subunit C, 99.7 4.4E-16 1.5E-20 111.1 10.2 73 89-162 8-84 (89)
5 2x2v_A ATP synthase subunit C; 99.7 5.8E-16 2E-20 105.6 9.5 63 96-158 3-69 (69)
6 1a91_A F1FO ATPase subunit C; 99.6 1.7E-15 5.7E-20 105.9 10.3 67 94-160 8-78 (79)
7 2xqu_A C15_RING, ATP synthase 99.6 4E-15 1.4E-19 104.6 9.4 74 8-81 2-79 (82)
8 2x2v_A ATP synthase subunit C; 99.6 1.3E-14 4.5E-19 98.9 8.2 62 17-78 3-68 (69)
9 1wu0_A ATP synthase C chain; A 99.6 7.6E-15 2.6E-19 100.8 7.0 65 15-79 3-71 (72)
10 2xnd_J ATP synthase lipid-bind 99.5 2.4E-15 8.1E-20 103.4 2.8 66 92-158 3-72 (72)
11 4f4s_A ATP synthase subunit 9, 99.5 4.8E-14 1.6E-18 97.6 9.0 69 90-159 3-75 (76)
12 1a91_A F1FO ATPase subunit C; 99.5 1.4E-13 4.8E-18 96.1 8.9 66 15-80 8-77 (79)
13 2wgm_A ATP synthase subunit C, 99.5 1.3E-13 4.6E-18 98.2 8.3 69 12-81 10-82 (89)
14 2bl2_A V-type sodium ATP synth 99.4 1.4E-12 4.9E-17 101.5 9.9 71 92-162 12-82 (156)
15 2xnd_J ATP synthase lipid-bind 99.3 1.7E-13 5.7E-18 94.2 1.5 63 15-78 5-71 (72)
16 4f4s_A ATP synthase subunit 9, 99.2 5.5E-11 1.9E-15 82.2 6.7 66 14-80 6-75 (76)
No 1
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=100.00 E-value=1.4e-36 Score=237.28 Aligned_cols=148 Identities=26% Similarity=0.484 Sum_probs=141.6
Q ss_pred CCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccchHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q 031073 9 DETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSY 88 (166)
Q Consensus 9 ~~~~~~~~~lGa~la~gLsaiGs~~G~~~ag~a~~~~~~~~p~~~~~~li~~a~~e~~~IYglvv~~li~~~i~~~~~~~ 88 (166)
+..+|+++++|++++++++++|++||+++++++++++++||||.++|++++++|||+|+|||||+++++..+++++ +
T Consensus 8 ~~~~~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~l~~~---~ 84 (156)
T 2bl2_A 8 QNGGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLGSD---M 84 (156)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHTCCTT---C
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---h
Confidence 3446789999999999999999999999999999999999999999999999999999999999999999988753 5
Q ss_pred cHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031073 89 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 159 (166)
Q Consensus 89 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~~i~~a~~E~~aI~glvialll~~~ 159 (166)
++.++++++++|+++|++++++|++||+++++++++++||||.++|+++..+|+|+++||+++++++++++
T Consensus 85 ~~~~g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~~ii~~a~~Ea~ai~glvia~ll~~~ 155 (156)
T 2bl2_A 85 SVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVETYAILGFVISFLLVLN 155 (156)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999886
No 2
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=99.71 E-value=6.7e-17 Score=113.72 Aligned_cols=74 Identities=28% Similarity=0.475 Sum_probs=69.8
Q ss_pred cHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 031073 89 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 162 (166)
Q Consensus 89 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~~i~~a~~E~~aI~glvialll~~~~~~ 162 (166)
.+..+++++++|+++|++++++|++||+++++++++++|||| +|+++++..+++|+++||+++++++++++.|.
T Consensus 4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~~p~ 81 (82)
T 2xqu_A 4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPF 81 (82)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 367899999999999999999999999999999999999998 78889999999999999999999999998764
No 3
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=99.67 E-value=2.2e-16 Score=108.55 Aligned_cols=67 Identities=28% Similarity=0.498 Sum_probs=62.7
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031073 93 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 159 (166)
Q Consensus 93 ~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~~i~~a~~E~~aI~glvialll~~~ 159 (166)
+++++++++++|++++++|++||+++++++++++|||| +|+++++..+++|+++||++++++++++.
T Consensus 2 ~~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf~ 72 (72)
T 1wu0_A 2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLGR 72 (72)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999998 77779999999999999999999998763
No 4
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=99.67 E-value=4.4e-16 Score=111.08 Aligned_cols=73 Identities=25% Similarity=0.401 Sum_probs=69.3
Q ss_pred cHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 031073 89 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 162 (166)
Q Consensus 89 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~~i~~a~~E~~aI~glvialll~~~~~~ 162 (166)
++..+++++++|+++ ++++++|++||+++++++++++|||| +|++++++.+++|+++||+++++++++++.|.
T Consensus 8 ~~~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~p~ 84 (89)
T 2wgm_A 8 TVVLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANPF 84 (89)
T ss_dssp HHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999 99999999999999999999999998 69999999999999999999999999998875
No 5
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=99.66 E-value=5.8e-16 Score=105.61 Aligned_cols=63 Identities=24% Similarity=0.472 Sum_probs=59.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031073 96 HLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSS 158 (166)
Q Consensus 96 ~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~~i~~a~~E~~aI~glvialll~~ 158 (166)
++++++++|++++++|++||+++++++++++|||| +|+++++..+++|+++||+++++++++|
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf 69 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLILF 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999999999999 6666999999999999999999999874
No 6
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=99.64 E-value=1.7e-15 Score=105.87 Aligned_cols=67 Identities=21% Similarity=0.418 Sum_probs=63.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031073 94 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRA 160 (166)
Q Consensus 94 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~~i~~a~~E~~aI~glvialll~~~~ 160 (166)
+..+++++.+|++++++|++||+++++++++++|||| +|++++++.+++|+++||+++++++++++.
T Consensus 8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~ 78 (79)
T 1a91_A 8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAV 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999998 888899999999999999999999998864
No 7
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=99.60 E-value=4e-15 Score=104.57 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=66.9
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccchH----HHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031073 8 GDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI 81 (166)
Q Consensus 8 ~~~~~~~~~~lGa~la~gLsaiGs~~G~~~ag~a~~~~~~~~p~~----~~~~li~~a~~e~~~IYglvv~~li~~~i 81 (166)
++.+...+.++|+++++|++++|+++|+++++++++++++||||. ++++++..+|+|+++||+++++|++....
T Consensus 2 ~~~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~~ 79 (82)
T 2xqu_A 2 ESNLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFAN 79 (82)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334555689999999999999999999999999999999999994 66699999999999999999999998763
No 8
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=99.56 E-value=1.3e-14 Score=98.89 Aligned_cols=62 Identities=26% Similarity=0.297 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccchHHHh----HHHHHHHHHHHHHHHHHHHHHHH
Q 031073 17 FLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIIS 78 (166)
Q Consensus 17 ~lGa~la~gLsaiGs~~G~~~ag~a~~~~~~~~p~~~~~----~li~~a~~e~~~IYglvv~~li~ 78 (166)
++|+++++|++++|+++|+++++++++++++||||.++| +++..+|+|+++||+++++++++
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lll 68 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLIL 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999995555 99999999999999999999985
No 9
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=99.55 E-value=7.6e-15 Score=100.84 Aligned_cols=65 Identities=25% Similarity=0.316 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccchHH----HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031073 15 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIIST 79 (166)
Q Consensus 15 ~~~lGa~la~gLsaiGs~~G~~~ag~a~~~~~~~~p~~~----~~~li~~a~~e~~~IYglvv~~li~~ 79 (166)
+.++|+++++|++++|+++|+++++++++++++||||.+ +++++..+|+|+++||++++++++..
T Consensus 3 ~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf 71 (72)
T 1wu0_A 3 LGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLG 71 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467999999999999999999999999999999999955 45999999999999999999999864
No 10
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=99.53 E-value=2.4e-15 Score=103.38 Aligned_cols=66 Identities=26% Similarity=0.374 Sum_probs=60.8
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031073 92 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSS 158 (166)
Q Consensus 92 ~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~~i~~a~~E~~aI~glvialll~~ 158 (166)
.+++++++|+++ ++++++|++||+++++++++++|||| +|++++++.+++|+++||+++++++++|
T Consensus 3 ~~~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lllf 72 (72)
T 2xnd_J 3 TAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 72 (72)
T ss_dssp TTTTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356778999999 99999999999999999999999996 7778999999999999999999998754
No 11
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=99.53 E-value=4.8e-14 Score=97.58 Aligned_cols=69 Identities=28% Similarity=0.376 Sum_probs=64.2
Q ss_pred HHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031073 90 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 159 (166)
Q Consensus 90 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~----l~~~~~i~~a~~E~~aI~glvialll~~~ 159 (166)
+....+++++|+++ ++..++|+|+|.+.++.+++++|||| +|++++++.++.|+.+||+|+++++++|.
T Consensus 3 lv~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFa 75 (76)
T 4f4s_A 3 LVLAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG 75 (76)
T ss_dssp HHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678999999998 99999999999999999999999994 99999999999999999999999999874
No 12
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=99.48 E-value=1.4e-13 Score=96.07 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccch----HHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031073 15 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIISTG 80 (166)
Q Consensus 15 ~~~lGa~la~gLsaiGs~~G~~~ag~a~~~~~~~~p~----~~~~~li~~a~~e~~~IYglvv~~li~~~ 80 (166)
+..+++++++|++++|+++|+++++.+++++++|||| +++++++..+|+|+++||+|+++|++.+.
T Consensus 8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~ 77 (79)
T 1a91_A 8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3568999999999999999999999999999999999 55679999999999999999999998753
No 13
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=99.47 E-value=1.3e-13 Score=98.18 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccchH----HHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031073 12 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI 81 (166)
Q Consensus 12 ~~~~~~lGa~la~gLsaiGs~~G~~~ag~a~~~~~~~~p~~----~~~~li~~a~~e~~~IYglvv~~li~~~i 81 (166)
...+.++|+++++ ++++|+++|+++++.+++++++||||. ++++++..+|+|+++||++++++++....
T Consensus 10 ~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~ 82 (89)
T 2wgm_A 10 VLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYAN 82 (89)
T ss_dssp HHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999 999999999999999999999999994 88999999999999999999999998864
No 14
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=99.39 E-value=1.4e-12 Score=101.45 Aligned_cols=71 Identities=20% Similarity=0.443 Sum_probs=68.2
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 031073 92 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQ 162 (166)
Q Consensus 92 ~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~P~l~~~~~i~~a~~E~~aI~glvialll~~~~~~ 162 (166)
..+.+++++++++++++++++|+++++++++++.+||||+++|.++..+++|+++|||++++++++++.+.
T Consensus 12 ~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~l~~ 82 (156)
T 2bl2_A 12 MVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLGS 82 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999998763
No 15
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=99.34 E-value=1.7e-13 Score=94.15 Aligned_cols=63 Identities=22% Similarity=0.322 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccchHH----HhHHHHHHHHHHHHHHHHHHHHHHH
Q 031073 15 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIIS 78 (166)
Q Consensus 15 ~~~lGa~la~gLsaiGs~~G~~~ag~a~~~~~~~~p~~~----~~~li~~a~~e~~~IYglvv~~li~ 78 (166)
+.++|+++++ ++++|+++|+++++++++++++||||.+ +++++..+|+|+++||+|+++++++
T Consensus 5 ~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lll 71 (72)
T 2xnd_J 5 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLIL 71 (72)
T ss_dssp TTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568899999 9999999999999999999999999854 5689999999999999999999874
No 16
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=99.17 E-value=5.5e-11 Score=82.19 Aligned_cols=66 Identities=17% Similarity=0.310 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccchH----HHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031073 14 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG 80 (166)
Q Consensus 14 ~~~~lGa~la~gLsaiGs~~G~~~ag~a~~~~~~~~p~~----~~~~li~~a~~e~~~IYglvv~~li~~~ 80 (166)
.-.++|++++. ++.+|+++|++.+..+.+.+++||||. ++.+++..++.|+.+||+|+++|++++.
T Consensus 6 aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFa 75 (76)
T 4f4s_A 6 AAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG 75 (76)
T ss_dssp HHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999998 889999999999999999999999984 5568999999999999999999999764
Done!