BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031074
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EBR|A Chain A, Crystal Structure Of An Rmlc-Like Cupin Protein
(Reut_a0381) From Ralstonia Eutropha Jmp134 At 2.60 A
Resolution
Length = 159
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 71 IKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWL 122
+KY + +I + P P H+H G TV+ V GS K +DW+
Sbjct: 31 VKYFKIDPVRGETITLLKAPAGXEXPRHHHTG-TVIVYTVQGSWRYKEHDWV 81
>pdb|4IFD|H Chain H, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 361
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 33/172 (19%)
Query: 13 RAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLV---RNWPGPVLERNGRHPSLA 69
+ ++PE D + R+ + +K D+G +Q A L+ N PG +L R L
Sbjct: 103 KGRYAPE--TGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQ 160
Query: 70 PIKYLH-----------LHECDSFSI------------GIFCMPPSSMIP-----LHNHP 101
+L L + S S+ G+FC PSS+I HN P
Sbjct: 161 MRSFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLP 220
Query: 102 GMTVLSKLVYGSLHVKSYDWLDLPEPEDPLQGVFFWHILCPSSIDFLNPFMS 153
G + V G + ++ +DL P+ LNP ++
Sbjct: 221 GNITVVLGVNGYIWLRKTSQMDLARDTPSANNSSSIKSTGPTGAVSLNPSIT 272
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 1 MPYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPS 40
+ +Y+ R Y S G V DE +++++ ++KP+
Sbjct: 171 LRHYMDRFYTGDYVVISVAGNVHDELIDKIKETFSQVKPT 210
>pdb|2ATF|A Chain A, X-Ray Structure Of Cysteine Dioxygenase Type I From Mus
Musculus Mm.241056
pdb|2Q4S|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cysteine Dioxygenase Type I From Mus Musculus Mm.241056
Length = 200
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 82 FSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPEPE 128
F++ I C +H+H KL+ G+L +DW D E
Sbjct: 70 FNLXILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNE 116
>pdb|3FD5|A Chain A, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Ampcp
pdb|3FD5|B Chain B, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Ampcp
pdb|3FD6|A Chain A, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Adp And Phosphate
pdb|3FD6|B Chain B, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Adp And Phosphate
Length = 394
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 87 FCMPPSSMIPLHNHPG-MTVLSKLVYGSLHVKSYDWLDLPE 126
C P ++P + PG + VL+K + + V + WLD+PE
Sbjct: 181 VCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPE 221
>pdb|2GM6|A Chain A, Crystal Structure Of A Putative Cysteine Dioxygenase Type
I (reut_b5045) From Ralstonia Eutropha Jmp134 At 1.84 A
Resolution
Length = 208
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 65 HPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNH 100
HP LH + FSI F P P+H+H
Sbjct: 62 HPEYYQQXLLHCDSAERFSIVSFVWGPGQRTPIHDH 97
>pdb|2B5H|A Chain A, 1.5 A Resolution Crystal Structure Of Recombinant R.
Norvegicus Cysteine Dioxygenase
pdb|2GH2|A Chain A, 1.5 A Resolution R. Norvegicus Cysteine Dioxygenase
Structure Crystallized In The Presence Of Cysteine
pdb|3ELN|A Chain A, A Putative Fe2+-Bound Persulfenate Intermediate In
Cysteine Dioxygenase
Length = 200
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 81 SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPEPE 128
F++ I C +H+H KL+ G+L +DW D E
Sbjct: 69 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNE 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,492,672
Number of Sequences: 62578
Number of extensions: 223430
Number of successful extensions: 504
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 7
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)