Query 031074
Match_columns 166
No_of_seqs 121 out of 195
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 08:51:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4281 Uncharacterized conser 100.0 9.4E-49 2E-53 328.4 12.6 137 1-145 1-148 (236)
2 PF07847 DUF1637: Protein of u 100.0 1.2E-36 2.6E-41 251.5 8.0 108 33-146 1-117 (200)
3 PF05995 CDO_I: Cysteine dioxy 98.3 1.3E-06 2.8E-11 70.4 6.9 100 5-124 18-117 (175)
4 COG1917 Uncharacterized conser 96.2 0.0047 1E-07 46.3 3.1 41 78-118 39-79 (131)
5 TIGR03404 bicupin_oxalic bicup 94.4 0.037 8.1E-07 49.7 3.4 42 79-120 242-283 (367)
6 PF07883 Cupin_2: Cupin domain 94.0 0.011 2.3E-07 39.0 -0.7 33 85-117 1-33 (71)
7 TIGR02451 anti_sig_ChrR anti-s 94.0 0.069 1.5E-06 44.5 3.8 58 69-127 113-176 (215)
8 TIGR01479 GMP_PMI mannose-1-ph 93.5 0.12 2.5E-06 47.5 4.7 79 22-118 331-412 (468)
9 PF12973 Cupin_7: ChrR Cupin-l 92.9 0.068 1.5E-06 38.2 1.9 50 68-118 7-59 (91)
10 smart00835 Cupin_1 Cupin. This 92.6 0.11 2.3E-06 39.9 2.7 45 75-119 23-67 (146)
11 PRK13290 ectC L-ectoine syntha 87.9 0.5 1.1E-05 36.5 2.8 47 71-118 22-70 (125)
12 PF01050 MannoseP_isomer: Mann 85.9 1.9 4.2E-05 34.4 5.3 80 23-118 19-99 (151)
13 COG0662 {ManC} Mannose-6-phosp 84.9 1.4 2.9E-05 33.5 3.8 51 68-118 22-72 (127)
14 KOG4064 Cysteine dioxygenase C 84.8 1 2.2E-05 37.6 3.3 47 78-124 68-114 (196)
15 COG5553 Predicted metal-depend 80.4 3.7 8.1E-05 34.5 4.9 46 78-124 69-114 (191)
16 TIGR03214 ura-cupin putative a 80.1 1.6 3.4E-05 37.3 2.7 36 81-117 178-214 (260)
17 TIGR03404 bicupin_oxalic bicup 78.1 2 4.2E-05 38.8 2.9 40 80-120 65-104 (367)
18 PRK15460 cpsB mannose-1-phosph 76.4 4.1 8.9E-05 38.1 4.6 80 23-118 341-421 (478)
19 PF11699 CENP-C_C: Mif2/CENP-C 56.8 8.9 0.00019 28.1 2.1 46 73-118 3-48 (85)
20 PRK11171 hypothetical protein; 54.2 12 0.00026 32.1 2.7 38 81-118 183-220 (266)
21 PF00190 Cupin_1: Cupin; Inte 50.2 7.1 0.00015 29.7 0.7 43 78-121 30-72 (144)
22 TIGR03037 anthran_nbaC 3-hydro 43.0 36 0.00079 27.8 3.8 52 67-120 14-65 (159)
23 PRK09943 DNA-binding transcrip 40.9 1.4E+02 0.0029 23.6 6.7 95 20-118 45-143 (185)
24 PLN00212 glutelin; Provisional 38.2 25 0.00055 33.4 2.5 42 78-119 344-385 (493)
25 PRK13264 3-hydroxyanthranilate 37.7 59 0.0013 27.1 4.3 52 67-120 20-71 (177)
26 PF07351 DUF1480: Protein of u 35.6 35 0.00076 25.3 2.4 36 113-148 5-40 (80)
27 PRK11171 hypothetical protein; 34.9 45 0.00097 28.5 3.3 40 79-118 58-98 (266)
28 PF00970 FAD_binding_6: Oxidor 26.9 1.8E+02 0.0039 20.0 4.8 47 79-126 11-58 (99)
29 PF11142 DUF2917: Protein of u 25.9 41 0.00088 23.1 1.3 32 86-119 1-32 (63)
30 PF14164 YqzH: YqzH-like prote 25.4 1.2E+02 0.0025 21.7 3.5 38 3-40 4-44 (64)
31 KOG2132 Uncharacterized conser 25.2 91 0.002 28.8 3.7 50 74-124 242-291 (355)
32 PF13759 2OG-FeII_Oxy_5: Putat 25.1 35 0.00075 24.5 0.9 15 89-103 7-21 (101)
33 PRK10371 DNA-binding transcrip 23.3 77 0.0017 27.1 2.8 40 78-118 22-61 (302)
34 KOG1280 Uncharacterized conser 23.3 16 0.00034 33.9 -1.5 33 77-109 27-61 (381)
35 PRK12335 tellurite resistance 21.8 34 0.00075 29.0 0.3 31 91-121 20-51 (287)
No 1
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9.4e-49 Score=328.44 Aligned_cols=137 Identities=57% Similarity=1.046 Sum_probs=119.3
Q ss_pred CChHHHHHHHHHhhhcCCCCC-CCHHHHHHHHHHhccCCccCCCCchhhhcccCCCCCCccCCCCCCCCCCeeEEeeecC
Q 031074 1 MPYYIQRLYNTCRAAFSPEGP-VTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHEC 79 (166)
Q Consensus 1 m~~~IQrL~~~c~~tFs~~~~-ps~~~l~kL~~lLd~Itp~DvgLd~~~~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e~ 79 (166)
||. +||||+.||++|+.+++ ++++++++||++||+|+++||||+++++.+++ +.. ..+..+||+|+|||||
T Consensus 1 ~p~-vq~l~ntck~~fs~~~pg~~~~nlqkLr~vLd~lkp~Dvgl~~~~~~~~~--~~~-----~~rn~ppitYlhi~Ec 72 (236)
T KOG4281|consen 1 SPF-VQRLFNTCKEVFSTGGPGPFEENLQKLRSVLDELKPEDVGLEPEMQYFRP--SGV-----SERNLPPITYLHIHEC 72 (236)
T ss_pred Chh-hHHHHHHHHHHhcCCCCCccHHHHHHHHHHHhhCCHhhcCcChhhhhccC--CCC-----CcCCCCCceEEEEEec
Confidence 565 99999999999998776 89999999999999999999999999988764 111 1233689999999999
Q ss_pred CceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEeeccCCCC--CCCCCc-ceE-------EEecCCcccc
Q 031074 80 DSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPE--PEDPLQ-GVF-------FWHILCPSSI 145 (166)
Q Consensus 80 ~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~v~~~~--~~~~~~-~~~-------~~~~~~~~~~ 145 (166)
+.|||||||||+|++||||||||||||||+|||+|||+||||++++. ..++.| +|. .+|++||.++
T Consensus 73 D~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyDw~ePd~~~~~dp~q~~r~akl~~d~~~T~~s~~~~ 148 (236)
T KOG4281|consen 73 DRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYDWVEPDEPQTEDPHQPVRPAKLVSDKEFTAASPAST 148 (236)
T ss_pred CceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeeccccCCCCcccCCCCcceeeeeEeccceecCCCCCcE
Confidence 99999999999999999999999999999999999999999998764 335533 444 8999999886
No 2
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=100.00 E-value=1.2e-36 Score=251.53 Aligned_cols=108 Identities=51% Similarity=0.907 Sum_probs=89.9
Q ss_pred HhccCCccCCCCchhhhcccCCCCCCccCCCCCCCCCCeeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhcc
Q 031074 33 MLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYG 112 (166)
Q Consensus 33 lLd~Itp~DvgLd~~~~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~G 112 (166)
|||+||++||||+++...++. .........++|+|++||||++||||||+||+|++||||||||||||||||||
T Consensus 1 lld~i~~~Dvgl~~~~~~~~~------~~~~~~~~~~~i~y~~iyE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~G 74 (200)
T PF07847_consen 1 LLDKITPEDVGLDPSLQFFRA------PSNRSSPSSPPITYMHIYEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYG 74 (200)
T ss_pred CcCcccHHHcCCCcccccccc------cccccCCCCCCeEEEEEEECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEee
Confidence 689999999999999976642 11223456899999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeccCCCCCCC-----CCcceE----EEecCCccccc
Q 031074 113 SLHVKSYDWLDLPEPED-----PLQGVF----FWHILCPSSID 146 (166)
Q Consensus 113 s~~v~Syd~v~~~~~~~-----~~~~~~----~~~~~~~~~~~ 146 (166)
++||+||||++...... ...+++ +++++|.++|=
T Consensus 75 s~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL 117 (200)
T PF07847_consen 75 SLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVL 117 (200)
T ss_pred eEEEEEccccccccccccccccceeeEEEecceecCCCCCeEE
Confidence 99999999999544322 222444 59999998873
No 3
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=98.35 E-value=1.3e-06 Score=70.36 Aligned_cols=100 Identities=20% Similarity=0.330 Sum_probs=69.1
Q ss_pred HHHHHHHHhhhcCCCCCCCHHHHHHHHHHhccCCccCCCCchhhhcccCCCCCCccCCCCCCCCCCeeEEeeecCCceEE
Q 031074 5 IQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSI 84 (166)
Q Consensus 5 IQrL~~~c~~tFs~~~~ps~~~l~kL~~lLd~Itp~DvgLd~~~~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e~~~fs~ 84 (166)
++.++++-+..|.. ...++++++.++..+.... ++-.. +..+ ....-++--||.++.|++
T Consensus 18 ~~~li~~L~~~~~~----~~~~v~~i~~l~~~~~~~~---~~w~~-~~~~------------d~~~Y~r~ll~~~~~~el 77 (175)
T PF05995_consen 18 LADLIADLRQIFDQ----EPDDVEEIAALLRSLASDP---SDWLK-YARF------------DPDRYTRNLLYRDERFEL 77 (175)
T ss_dssp HHHHHHHHHHHTSS----SSHHHHHHHHHHHHSCSSC---HHHGG-GC--------------SSSSSEEEEEEGGCT-EE
T ss_pred HHHHHHHHHHhhcc----cccCHHHHHHHHHHHhcCh---HHHHH-hhcc------------cCCCCeEEEEecCCCeEE
Confidence 56666777777753 2467888888888776532 11111 1111 112356777899999999
Q ss_pred EEEEcCCCCcccCCCCCCChhhhhhhccceEEEEeeccCC
Q 031074 85 GIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDL 124 (166)
Q Consensus 85 ~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~v~~ 124 (166)
-++|-+||..-|.|||.|..++.+||.|.++-.-|.|.+.
T Consensus 78 ~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~ 117 (175)
T PF05995_consen 78 WLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDD 117 (175)
T ss_dssp EEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTS
T ss_pred EEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCc
Confidence 9999999999999999999999999999999999999876
No 4
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.19 E-value=0.0047 Score=46.33 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=37.1
Q ss_pred cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031074 78 ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS 118 (166)
Q Consensus 78 e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S 118 (166)
+..++.+..|.+.+|+++|-|.||......-||.|.+.+.-
T Consensus 39 ~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~ 79 (131)
T COG1917 39 EGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL 79 (131)
T ss_pred CCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEe
Confidence 57889999999999999999999988888899999998754
No 5
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=94.45 E-value=0.037 Score=49.70 Aligned_cols=42 Identities=19% Similarity=0.393 Sum_probs=38.4
Q ss_pred CCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031074 79 CDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD 120 (166)
Q Consensus 79 ~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd 120 (166)
...++++.+.|+||+..++|.||+-.=+.-||.|++++..+|
T Consensus 242 ~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d 283 (367)
T TIGR03404 242 SKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFA 283 (367)
T ss_pred cceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEe
Confidence 356999999999999999999999999999999999998764
No 6
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=94.03 E-value=0.011 Score=38.99 Aligned_cols=33 Identities=30% Similarity=0.618 Sum_probs=30.7
Q ss_pred EEEEcCCCCcccCCCCCCChhhhhhhccceEEE
Q 031074 85 GIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVK 117 (166)
Q Consensus 85 ~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~ 117 (166)
|+.-++||+.+|.|-|++...+.-||.|++.+.
T Consensus 1 ~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~ 33 (71)
T PF07883_consen 1 GLVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT 33 (71)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEEESEEEEE
T ss_pred CEEEECCCCCCCCEECCCCCEEEEEEECCEEEE
Confidence 567899999999999999999999999999987
No 7
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=93.96 E-value=0.069 Score=44.53 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=45.5
Q ss_pred CCeeEEeeec-CCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEE-----EEeeccCCCCC
Q 031074 69 APIKYLHLHE-CDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHV-----KSYDWLDLPEP 127 (166)
Q Consensus 69 ~pi~y~~i~e-~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v-----~Syd~v~~~~~ 127 (166)
+.+..+.++. ++.-++.+..+++|+.+|.|.|.|.- +.-||.|+..- ..-||+..+..
T Consensus 113 ~gv~~~~L~~~~~~~~v~Ll~i~pG~~~p~H~H~G~E-~tlVLeG~f~de~g~y~~Gd~i~~p~~ 176 (215)
T TIGR02451 113 GRVSRVTLPIDDGNARVRLLYIEAGQSIPQHTHKGFE-LTLVLHGAFSDETGVYGVGDFEEADGS 176 (215)
T ss_pred CCeEEEeccCCCCCcEEEEEEECCCCccCCCcCCCcE-EEEEEEEEEEcCCCccCCCeEEECCCC
Confidence 4588888887 55779999999999999999999988 66789998652 23467665543
No 8
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=93.45 E-value=0.12 Score=47.47 Aligned_cols=79 Identities=18% Similarity=0.371 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHhccCCccCCCCchhh---hcccCCCCCCccCCCCCCCCCCeeEEeeecCCceEEEEEEcCCCCcccCC
Q 031074 22 VTDEALERVRAMLDKIKPSDVGLEQEA---QLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLH 98 (166)
Q Consensus 22 ps~~~l~kL~~lLd~Itp~DvgLd~~~---~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e~~~fs~~iF~lp~g~~IPLH 98 (166)
...+..|++|.+.++++.+ |.+.-. ...++| -+|..+++.+.|.+..+.++||+.+++|
T Consensus 331 ~~~~~~q~vk~~v~~l~~~--~~~~~~~~~~~~~pW----------------G~~~~~~~~~~~~~~~~~i~PG~~~~~h 392 (468)
T TIGR01479 331 AHKDRVQDVKKIVEQLKAD--GRTETEQHREVYRPW----------------GKYDSIDQGDRYQVKRITVKPGEKLSLQ 392 (468)
T ss_pred echHHhhhHHHHHHHHHhc--CchhhhcCceEECCC----------------CceEEEecCCCEEEEEEEECCCCccCcc
Confidence 3456778888888888633 222222 123555 2367788999999999999999999988
Q ss_pred CCCCChhhhhhhccceEEEE
Q 031074 99 NHPGMTVLSKLVYGSLHVKS 118 (166)
Q Consensus 99 DHPgMtv~sKvL~Gs~~v~S 118 (166)
-|++=.-..-||.|++.+.-
T Consensus 393 ~H~~~~E~~~Vl~G~~~v~~ 412 (468)
T TIGR01479 393 MHHHRAEHWIVVSGTARVTI 412 (468)
T ss_pred ccCCCceEEEEEeeEEEEEE
Confidence 88755544479999999873
No 9
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=92.92 E-value=0.068 Score=38.16 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=39.0
Q ss_pred CCCeeEEeeecCC---ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031074 68 LAPIKYLHLHECD---SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS 118 (166)
Q Consensus 68 ~~pi~y~~i~e~~---~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S 118 (166)
.+.|....+++++ ...+.+--+.||+.+|.|.|++--- .=||.|++....
T Consensus 7 ~~Gv~~~~L~~~~~~~g~~~~L~r~~pG~~~p~H~H~g~ee-~~VLeG~~~d~~ 59 (91)
T PF12973_consen 7 RPGVSVKPLHRDEGETGERVSLLRLEPGASLPRHRHPGGEE-ILVLEGELSDGD 59 (91)
T ss_dssp STTEEEEEEEECSSSTTEEEEEEEE-TTEEEEEEEESS-EE-EEEEECEEEETT
T ss_pred CCCEEEEEeccCCCcccCEEEEEEECCCCCcCccCCCCcEE-EEEEEEEEEECC
Confidence 4679999999765 4688899999999999999998544 368899887543
No 10
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=92.55 E-value=0.11 Score=39.91 Aligned_cols=45 Identities=27% Similarity=0.272 Sum_probs=39.3
Q ss_pred eeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEe
Q 031074 75 HLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSY 119 (166)
Q Consensus 75 ~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Sy 119 (166)
..+++..+++....+++|+..+.|-||+-.-+.-||.|.+.+..-
T Consensus 23 ~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~ 67 (146)
T smart00835 23 PALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVV 67 (146)
T ss_pred cccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEE
Confidence 557788999999999999999999999777788899999988643
No 11
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=87.88 E-value=0.5 Score=36.48 Aligned_cols=47 Identities=17% Similarity=0.076 Sum_probs=36.5
Q ss_pred eeEEeeecCC--ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031074 71 IKYLHLHECD--SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS 118 (166)
Q Consensus 71 i~y~~i~e~~--~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S 118 (166)
++.--+.+.+ .|++-.+.|+||+.+|.|-|... -+.-||.|++.+..
T Consensus 22 ~~krll~~~~~~~~~~~~~~l~pG~~~~~h~h~~~-E~~yVL~G~~~~~~ 70 (125)
T PRK13290 22 TSRRLLLKDDGMGFSFHETTIYAGTETHLHYKNHL-EAVYCIEGEGEVED 70 (125)
T ss_pred eEEEEEEecCCCCEEEEEEEECCCCcccceeCCCE-EEEEEEeCEEEEEE
Confidence 4444455444 56666689999999999999876 49999999999884
No 12
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=85.95 E-value=1.9 Score=34.40 Aligned_cols=80 Identities=16% Similarity=0.292 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHhccCCccCCCCch-hhhcccCCCCCCccCCCCCCCCCCeeEEeeecCCceEEEEEEcCCCCcccCCCCC
Q 031074 23 TDEALERVRAMLDKIKPSDVGLEQ-EAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHP 101 (166)
Q Consensus 23 s~~~l~kL~~lLd~Itp~DvgLd~-~~~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e~~~fs~~iF~lp~g~~IPLHDHP 101 (166)
..+..+++|.++++++.+.-.... .....++| -+|--|.+.+.|.+-...+.||..++||-|.
T Consensus 19 ~k~~~q~vK~~v~~lk~~~~~E~~~~~~~~rpW----------------G~~~~l~~~~~~~vkri~V~pG~~lSlq~H~ 82 (151)
T PF01050_consen 19 DKDRSQDVKEVVEQLKQKGRYEAKEHRRVYRPW----------------GSYEVLDEGEGYKVKRITVNPGKRLSLQYHH 82 (151)
T ss_pred CcHHhhhhHHHHHhhhcccccccccceeEecCC----------------cEEEEEEccCCEEEEEEEEcCCCccceeeec
Confidence 456778888888887655322211 11123445 2477777899999999999999999999999
Q ss_pred CChhhhhhhccceEEEE
Q 031074 102 GMTVLSKLVYGSLHVKS 118 (166)
Q Consensus 102 gMtv~sKvL~Gs~~v~S 118 (166)
.=.=.--|+.|.+.|..
T Consensus 83 ~R~E~W~Vv~G~a~v~~ 99 (151)
T PF01050_consen 83 HRSEHWTVVSGTAEVTL 99 (151)
T ss_pred ccccEEEEEeCeEEEEE
Confidence 88888889999999886
No 13
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=84.86 E-value=1.4 Score=33.47 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=42.7
Q ss_pred CCCeeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031074 68 LAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS 118 (166)
Q Consensus 68 ~~pi~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S 118 (166)
.+.-.|-.+.+.+.+++..+.+++|..+++|-|..=--+--||.|.+.|.-
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~ 72 (127)
T COG0662 22 RPWGSYTVLDAGDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI 72 (127)
T ss_pred eCCcceeecccCCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE
Confidence 344556666788999999999999999999999997778888999888753
No 14
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=84.83 E-value=1 Score=37.59 Aligned_cols=47 Identities=23% Similarity=0.467 Sum_probs=43.3
Q ss_pred cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEeeccCC
Q 031074 78 ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDL 124 (166)
Q Consensus 78 e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~v~~ 124 (166)
.+..|.+-|.|--+|---..|||-+-+-|.|+|.|.++=+-|.|-|.
T Consensus 68 GNGKfNLmILCWGeGhgSSvHDHtdsHCF~KmL~G~L~Et~yawPd~ 114 (196)
T KOG4064|consen 68 GNGKFNLMILCWGEGHGSSVHDHTDSHCFVKMLDGELTETKYAWPDR 114 (196)
T ss_pred CCCeEeEEEEEecCCCCccccccccchhHHHHhcCcchhhcccCCCc
Confidence 35789999999999999999999999999999999999999999764
No 15
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=80.37 E-value=3.7 Score=34.49 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=37.3
Q ss_pred cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEeeccCC
Q 031074 78 ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDL 124 (166)
Q Consensus 78 e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~v~~ 124 (166)
+-..|||--|.+-||..-|.||| +|-++.-+|.|.=+=.-|-....
T Consensus 69 ~~gfltV~~~t~~PG~~~p~HnH-~~wglVgil~G~E~n~~y~~~~~ 114 (191)
T COG5553 69 PQGFLTVYHITLSPGVQYPPHNH-LMWGLVGILWGGETNFIYPLAGE 114 (191)
T ss_pred ccccEEEEEEEeCCCcccCCccc-chheeeeeeecccccceecccCC
Confidence 44569999999999999999999 79999999999876555554433
No 16
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=80.07 E-value=1.6 Score=37.34 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=30.5
Q ss_pred ceEEEEEEcCCCCcccC-CCCCCChhhhhhhccceEEE
Q 031074 81 SFSIGIFCMPPSSMIPL-HNHPGMTVLSKLVYGSLHVK 117 (166)
Q Consensus 81 ~fs~~iF~lp~g~~IPL-HDHPgMtv~sKvL~Gs~~v~ 117 (166)
+|.|.+|.|+||+.||. |-|+.++++ -||.|+..++
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~-yiL~G~G~~~ 214 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGL-YVLEGKGVYN 214 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEE-EEEeceEEEE
Confidence 88999999999999996 777766776 7889988764
No 17
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=78.11 E-value=2 Score=38.79 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=35.1
Q ss_pred CceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031074 80 DSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD 120 (166)
Q Consensus 80 ~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd 120 (166)
..+++...-|.+|+.+|+|.|.+.. +.-|+.|++++...|
T Consensus 65 ~~ls~~~~~l~pG~~~~~HwH~~~E-~~yVl~G~~~v~~~d 104 (367)
T TIGR03404 65 TAIAGVNMRLEPGAIRELHWHKEAE-WAYVLYGSCRITAVD 104 (367)
T ss_pred ccccceEEEEcCCCCCCcccCCCce-EEEEEeeEEEEEEEc
Confidence 3578888899999999999999986 899999999988764
No 18
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=76.40 E-value=4.1 Score=38.12 Aligned_cols=80 Identities=18% Similarity=0.294 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHhccCCccCCC-CchhhhcccCCCCCCccCCCCCCCCCCeeEEeeecCCceEEEEEEcCCCCcccCCCCC
Q 031074 23 TDEALERVRAMLDKIKPSDVG-LEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHP 101 (166)
Q Consensus 23 s~~~l~kL~~lLd~Itp~Dvg-Ld~~~~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e~~~fs~~iF~lp~g~~IPLHDHP 101 (166)
+.+..|++|.++++++.+.-. +..-....++| -+|..+-+...|.+....++||+.+++|-|.
T Consensus 341 ~k~~~q~vk~~v~~l~~~~~~~~~~~~~~~rpW----------------G~~~~l~~g~~~~v~~i~v~PG~~~~~~~H~ 404 (478)
T PRK15460 341 DRNAVQDVKKVVEQIKADGRHEHRVHREVYRPW----------------GKYDSIDAGDRYQVKRITVKPGEGLSVQMHH 404 (478)
T ss_pred chhhhhhHHHHHHHHHhcCCchhhccccEECCC----------------CceEeecCCCcEEEEEEEECCCCcCCcCCCC
Confidence 445778888888888633211 00111234555 2355566778999999999999999888776
Q ss_pred CChhhhhhhccceEEEE
Q 031074 102 GMTVLSKLVYGSLHVKS 118 (166)
Q Consensus 102 gMtv~sKvL~Gs~~v~S 118 (166)
+-.=..-|+.|.+.+.-
T Consensus 405 ~~~E~~~VlsG~~~v~i 421 (478)
T PRK15460 405 HRAEHWVVVAGTAKVTI 421 (478)
T ss_pred CCceEEEEEeeEEEEEE
Confidence 55545559999998764
No 19
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=56.76 E-value=8.9 Score=28.07 Aligned_cols=46 Identities=22% Similarity=0.415 Sum_probs=36.1
Q ss_pred EEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031074 73 YLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS 118 (166)
Q Consensus 73 y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S 118 (166)
+..++....|+-|+..||||+.=|+=+==.|+-.--|+.|.+.|+-
T Consensus 3 ~~k~f~~~~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti 48 (85)
T PF11699_consen 3 FAKLFDTPFFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI 48 (85)
T ss_dssp EEEE--TTS-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE
T ss_pred EEEEcCCCCceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE
Confidence 5566766799999999999999999999999999999999999875
No 20
>PRK11171 hypothetical protein; Provisional
Probab=54.15 E-value=12 Score=32.06 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=30.3
Q ss_pred ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031074 81 SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS 118 (166)
Q Consensus 81 ~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S 118 (166)
+|.|..|.|+||+.++.|=|-++.=..-||.|++.+.-
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~ 220 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL 220 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE
Confidence 35888899999999999645555566679999999853
No 21
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=50.23 E-value=7.1 Score=29.73 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=37.2
Q ss_pred cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEeec
Q 031074 78 ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDW 121 (166)
Q Consensus 78 e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~ 121 (166)
.+..+.+.+..+.||+.++.|-| .-+-+.-|+.|++++.-.+.
T Consensus 30 ~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~ 72 (144)
T PF00190_consen 30 GLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGP 72 (144)
T ss_dssp HHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEET
T ss_pred cccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEec
Confidence 45677788888899999999999 99999999999999776654
No 22
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=42.99 E-value=36 Score=27.85 Aligned_cols=52 Identities=15% Similarity=0.307 Sum_probs=41.4
Q ss_pred CCCCeeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031074 67 SLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD 120 (166)
Q Consensus 67 ~~~pi~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd 120 (166)
-.||+....||++..|.+.++ =-+|++-..|.|++ --+.-+|.|++.|+--|
T Consensus 14 l~pPv~n~~l~~~~~~~v~~v-gGpn~R~d~H~~~t-dE~FyqleG~~~l~v~d 65 (159)
T TIGR03037 14 LKPPVGNQQIWQDSEFMVTVV-GGPNARTDFHDDPG-EEFFYQLKGEMYLKVTE 65 (159)
T ss_pred hCCCCCceEeecCCcEEEEEe-CCCCCCcccccCCC-ceEEEEEcceEEEEEEc
Confidence 357899999999888877763 26888999999996 56667899999997544
No 23
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=40.92 E-value=1.4e+02 Score=23.64 Aligned_cols=95 Identities=9% Similarity=0.050 Sum_probs=48.6
Q ss_pred CCCCHHHHHHHHHHhccCCccCCCCchhhhcccCCCCCCccCCCCCCCCCCeeEEeeec-CCceEEEEE--EcCCCCcc-
Q 031074 20 GPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHE-CDSFSIGIF--CMPPSSMI- 95 (166)
Q Consensus 20 ~~ps~~~l~kL~~lLd~Itp~DvgLd~~~~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e-~~~fs~~iF--~lp~g~~I- 95 (166)
..|+.+.+.+|...+ .+++++|=-+++.............+ .......++|.-+.. +..-.+.++ .++||+..
T Consensus 45 ~~p~~~~l~~ia~~l-~v~~~~l~~~~~~~~~~~~v~~~~e~--~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~pg~~~~ 121 (185)
T PRK09943 45 VSPAISTLQKLLKVY-GLSLSEFFSEPEKPDEPQVVINQDDL--IEMGSQGVSMKLVHNGNPNRTLAMIFETYQPGTTTG 121 (185)
T ss_pred CCCCHHHHHHHHHHh-CCCHHHHccCccccCCcceEEchhHh--hccccCCceEEEeccCCCCCeeEEEEEEccCCCCcc
Confidence 478888999988877 34444443222111000000000000 001122345544442 222333333 45777764
Q ss_pred cCCCCCCChhhhhhhccceEEEE
Q 031074 96 PLHNHPGMTVLSKLVYGSLHVKS 118 (166)
Q Consensus 96 PLHDHPgMtv~sKvL~Gs~~v~S 118 (166)
+.|-|++ .=+.-||.|.+.+..
T Consensus 122 ~~~~h~~-~E~~~Vl~G~~~~~~ 143 (185)
T PRK09943 122 ERIKHQG-EEIGTVLEGEIVLTI 143 (185)
T ss_pred cccccCC-cEEEEEEEeEEEEEE
Confidence 5888999 466679999999864
No 24
>PLN00212 glutelin; Provisional
Probab=38.16 E-value=25 Score=33.38 Aligned_cols=42 Identities=7% Similarity=0.013 Sum_probs=37.6
Q ss_pred cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEe
Q 031074 78 ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSY 119 (166)
Q Consensus 78 e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Sy 119 (166)
..-..|+..--|.+|++++-|.||+-|-+.-|+-|+++|.--
T Consensus 344 ~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV 385 (493)
T PLN00212 344 NLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVV 385 (493)
T ss_pred cccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEE
Confidence 446688888899999999999999999999999999998853
No 25
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=37.67 E-value=59 Score=27.13 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=41.5
Q ss_pred CCCCeeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031074 67 SLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD 120 (166)
Q Consensus 67 ~~~pi~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd 120 (166)
-.||+.-..||.+.+|.+-|.- =+|..-.+|.||+. -+.-+|.|++.|+--|
T Consensus 20 l~pPv~n~~l~~~~d~~Vmvvg-Gpn~r~d~H~~~td-E~FyqleG~~~l~v~d 71 (177)
T PRK13264 20 LKPPVGNKQIWQDSDFIVMVVG-GPNARTDFHYDPGE-EFFYQLEGDMYLKVQE 71 (177)
T ss_pred hCCCCCCeeeEcCCCEEEEEEc-cCCcccccccCCCc-eEEEEECCeEEEEEEc
Confidence 3688999999998777766532 47889999999985 4556889999988865
No 26
>PF07351 DUF1480: Protein of unknown function (DUF1480); InterPro: IPR009950 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=35.59 E-value=35 Score=25.29 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=27.8
Q ss_pred ceEEEEeeccCCCCCCCCCcceEEEecCCccccccc
Q 031074 113 SLHVKSYDWLDLPEPEDPLQGVFFWHILCPSSIDFL 148 (166)
Q Consensus 113 s~~v~Syd~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (166)
+++|.+|...+..-+...-+..--+++||-+--|+-
T Consensus 5 ~vkIg~fEIdDA~l~~~~~~~~~tlsIPCksdpdlc 40 (80)
T PF07351_consen 5 VVKIGSFEIDDAELSSEPDKGEDTLSIPCKSDPDLC 40 (80)
T ss_pred EEEEEEEEEEeeEecCCCCCCCCeEEeecCCChhhe
Confidence 489999999887655555455778899999877763
No 27
>PRK11171 hypothetical protein; Provisional
Probab=34.94 E-value=45 Score=28.52 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=33.4
Q ss_pred CCceEEEEEEcCCCCcccCCCCC-CChhhhhhhccceEEEE
Q 031074 79 CDSFSIGIFCMPPSSMIPLHNHP-GMTVLSKLVYGSLHVKS 118 (166)
Q Consensus 79 ~~~fs~~iF~lp~g~~IPLHDHP-gMtv~sKvL~Gs~~v~S 118 (166)
...|.+.+..++||+....|-|+ +.--+.-||.|.+.+.-
T Consensus 58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~ 98 (266)
T PRK11171 58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL 98 (266)
T ss_pred CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE
Confidence 67899999999999998887765 66677779999999864
No 28
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=26.87 E-value=1.8e+02 Score=20.03 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=30.9
Q ss_pred CCceEEEEEEcCCCCcccCCCCCCChhhhhhh-ccceEEEEeeccCCCC
Q 031074 79 CDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLV-YGSLHVKSYDWLDLPE 126 (166)
Q Consensus 79 ~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL-~Gs~~v~Syd~v~~~~ 126 (166)
.+++..=.|-++.+... ++-+||.++..++- .|....++|+.+..+.
T Consensus 11 s~~~~~~~~~~~~~~~~-~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~ 58 (99)
T PF00970_consen 11 SPDVKIFRFKLPDPDQK-LDFKPGQFVSVRVPINGKQVSRPYSPASSPD 58 (99)
T ss_dssp SSSEEEEEEEESSTTTT--SSTTT-EEEEEEEETTEEEEEEEEBCSSTT
T ss_pred CCCeEEEEEEECCCCcc-cccCcceEEEEEEccCCcceecceeEeeecC
Confidence 34444444555543322 67799999999887 4667889999998764
No 29
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=25.92 E-value=41 Score=23.10 Aligned_cols=32 Identities=16% Similarity=0.330 Sum_probs=27.8
Q ss_pred EEEcCCCCcccCCCCCCChhhhhhhccceEEEEe
Q 031074 86 IFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSY 119 (166)
Q Consensus 86 iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Sy 119 (166)
+|.|.+|..+.|+..-++. .+|..|.+=|+-.
T Consensus 1 ~~~L~~g~~~~lr~~~~~~--l~v~~G~vWlT~~ 32 (63)
T PF11142_consen 1 TFELAPGETLSLRAAAGQR--LRVESGRVWLTRE 32 (63)
T ss_pred CEEeCCCceEEeEcCCCcE--EEEccccEEEECC
Confidence 4889999999999999988 8899999877653
No 30
>PF14164 YqzH: YqzH-like protein
Probab=25.41 E-value=1.2e+02 Score=21.66 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhhhcCC---CCCCCHHHHHHHHHHhccCCcc
Q 031074 3 YYIQRLYNTCRAAFSP---EGPVTDEALERVRAMLDKIKPS 40 (166)
Q Consensus 3 ~~IQrL~~~c~~tFs~---~~~ps~~~l~kL~~lLd~Itp~ 40 (166)
++|++.+++|.+.++. .-++++++.+.|+.-+-+.+-+
T Consensus 4 k~I~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i~~~~~~ 44 (64)
T PF14164_consen 4 KLIEKMIINCLRQYGYDVECMPLSDEEWEELCKHIQERKNE 44 (64)
T ss_pred HHHHHHHHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHHhc
Confidence 5799999999999974 3478888888887655544433
No 31
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=25.20 E-value=91 Score=28.80 Aligned_cols=50 Identities=22% Similarity=0.430 Sum_probs=40.4
Q ss_pred EeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEeeccCC
Q 031074 74 LHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDL 124 (166)
Q Consensus 74 ~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~v~~ 124 (166)
..-++.+...+...+.|+|.+.|+|-=|--.+++.| +|+-+++-|-|.+.
T Consensus 242 ~~~f~~~~v~~~~w~GpaGtV~pih~dp~hNi~~qv-~G~k~i~l~~p~~s 291 (355)
T KOG2132|consen 242 FPNFENEVVDINAWIGPAGTVLPIHMDPWHNILSQV-FGRKRIRLYPPEDS 291 (355)
T ss_pred cCCCCccccceeEEeccCCceeccccccccceeeee-ecceEEEEecCccc
Confidence 334555668888899999999999999997777765 68888998888764
No 32
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=25.11 E-value=35 Score=24.47 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=7.9
Q ss_pred cCCCCcccCCCCCCC
Q 031074 89 MPPSSMIPLHNHPGM 103 (166)
Q Consensus 89 lp~g~~IPLHDHPgM 103 (166)
.++|...+.|+||+=
T Consensus 7 ~~~g~~~~~H~H~~s 21 (101)
T PF13759_consen 7 YRKGGYNEPHNHPNS 21 (101)
T ss_dssp E-TT--EEEE--TT-
T ss_pred eCCCCccCceECCCc
Confidence 379999999999885
No 33
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=23.33 E-value=77 Score=27.11 Aligned_cols=40 Identities=20% Similarity=0.112 Sum_probs=32.9
Q ss_pred cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031074 78 ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS 118 (166)
Q Consensus 78 e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S 118 (166)
|-+..-+.|..-|+....|+|.|..+-+. -++.|++.+..
T Consensus 22 ~~~~~~~~~~~~~~~~m~~~HwH~e~Ei~-yv~~G~~~~~i 61 (302)
T PRK10371 22 YSEYQRLEIEFRPPHIMPTSHWHGQVEVN-VPFDGDVEYLI 61 (302)
T ss_pred ccCCceeEEEeeCCCCCCCCCccccEEEE-EecCCcEEEEE
Confidence 34556678888999999999999999876 77899988765
No 34
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=23.31 E-value=16 Score=33.89 Aligned_cols=33 Identities=24% Similarity=0.675 Sum_probs=28.5
Q ss_pred ecCCceEEEEEEcCCCCcccCC--CCCCChhhhhh
Q 031074 77 HECDSFSIGIFCMPPSSMIPLH--NHPGMTVLSKL 109 (166)
Q Consensus 77 ~e~~~fs~~iF~lp~g~~IPLH--DHPgMtv~sKv 109 (166)
-.|.+|-+|-=|.-.|+.+|+| |||-..+++|+
T Consensus 27 L~C~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~ 61 (381)
T KOG1280|consen 27 LRCSDYDLCFSCYENGATTPIHDEDHPMQCILSRV 61 (381)
T ss_pred eeecchhHHHHHhhcCCCCcccCCCCceeEEeecc
Confidence 3588999999999999999998 68888888885
No 35
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=21.84 E-value=34 Score=28.97 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=26.2
Q ss_pred CCCcccCCCC-CCChhhhhhhccceEEEEeec
Q 031074 91 PSSMIPLHNH-PGMTVLSKLVYGSLHVKSYDW 121 (166)
Q Consensus 91 ~g~~IPLHDH-PgMtv~sKvL~Gs~~v~Syd~ 121 (166)
|++.+.=|+| ||--+...||.|++.+.-||-
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de 51 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTE 51 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECC
Confidence 4555667999 899999999999999999863
Done!