BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031075
         (166 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QQY|A Chain A, Crystal Structure Of A Novel Laglidadg Homing
           Endonuclease, I-Onui (From Ophiostoma Novo-Ulmi Subsp.
           Americana)
          Length = 307

 Score = 29.6 bits (65), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 22  MEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHLQANDSQKLIWN 81
           + DE+++ F  +  K  +   ++  + +++  F +G     E   F +L  + S+     
Sbjct: 146 LTDELKKAFPEIISKERSLINKNIPNFKWLAGFTSG-----EGCFFVNLIKSKSKL---- 196

Query: 82  GSEVTEEFQETEYYKDLNRINKDHHTTGTGFIKMEN 117
           G +V   F  T++ KD N +N      G G+IK +N
Sbjct: 197 GVQVQLVFSITQHIKDKNLMNSLITYLGCGYIKEKN 232


>pdb|2W3J|A Chain A, Structure Of A Family 35 Carbohydrate Binding Module From
           An Environmental Isolate
          Length = 145

 Score = 28.1 bits (61), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 14/23 (60%)

Query: 102 NKDHHTTGTGFIKMENANGKSFI 124
           NK    TGTGFI  ENA G S +
Sbjct: 20  NKHAGYTGTGFIDTENAVGASIV 42


>pdb|3LAG|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
           Rpa4178 From Rhodopseudomonas Palustris Cga009
 pdb|3LAG|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
           Rpa4178 From Rhodopseudomonas Palustris Cga009
          Length = 98

 Score = 26.9 bits (58), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 105 HHTTGTGFIKMENANGKSFILAPDN 129
           HHT G  ++ +  A+G+  I+APD 
Sbjct: 32  HHTHGXDYVVVPXADGEXTIVAPDG 56


>pdb|1XAG|A Chain A, Crystal Structure Of Staphlyococcus Aureus
           3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
           Nad+ And Carbaphosphonate
 pdb|1XAH|A Chain A, Crystal Structure Of Staphlyococcus Aureus
           3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
           And Nad+
 pdb|1XAH|B Chain B, Crystal Structure Of Staphlyococcus Aureus
           3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
           And Nad+
 pdb|1XAI|A Chain A, Crystal Structure Of Staphlyococcus Aureus
           3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
           Nad+ And Carbaphosphonate
 pdb|1XAI|B Chain B, Crystal Structure Of Staphlyococcus Aureus
           3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
           Nad+ And Carbaphosphonate
 pdb|1XAJ|A Chain A, Crystal Structure Of Staphlyococcus Aureus
           3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
           Nad+ And Carbaphosphonate
 pdb|1XAJ|B Chain B, Crystal Structure Of Staphlyococcus Aureus
           3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
           Nad+ And Carbaphosphonate
 pdb|1XAL|A Chain A, Crystal Structure Of Staphlyococcus Aureus
           3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
           Nad+ And Carbaphosphonate (soak)
 pdb|1XAL|B Chain B, Crystal Structure Of Staphlyococcus Aureus
           3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
           Nad+ And Carbaphosphonate (soak)
          Length = 354

 Score = 26.6 bits (57), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 40/114 (35%), Gaps = 27/114 (23%)

Query: 45  DYSSQYVDAFANGSDSNQEYSQFQHLQANDSQKLIWNGSEVTEEFQETEYYKDLNRINKD 104
           +Y +QY   FAN  D    Y         +  K+I    E T+ F++  Y + L  I   
Sbjct: 40  EYVNQY---FANKFDDILSYE--------NVHKVIIPAGEKTKTFEQ--YQETLEYILSH 86

Query: 105 HHTTGT--------------GFIKMENANGKSFILAPDNDDAHHSSCKGNPATN 144
           H T  T              GF+      G  FI  P    AH SS  G    N
Sbjct: 87  HVTRNTAIIAVGGGATGDFAGFVAATLLRGVHFIQVPTTILAHDSSVGGKVGIN 140


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.308    0.125    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,743,188
Number of Sequences: 62578
Number of extensions: 243019
Number of successful extensions: 444
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 19
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.7 bits)