Query 031075
Match_columns 166
No_of_seqs 28 out of 30
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 13:56:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s0p_A CAP, adenylyl cyclase-a 35.3 5.2 0.00018 32.0 -1.1 18 95-112 148-165 (176)
2 2fcg_F Cationic, antibacterial 35.1 26 0.00088 20.6 2.2 18 20-37 6-23 (26)
3 1vl0_A DTDP-4-dehydrorhamnose 30.8 9.3 0.00032 29.1 -0.3 7 107-113 18-24 (292)
4 2lma_A THP5 peptide; CD4+, imm 27.0 20 0.00067 20.9 0.7 16 88-103 3-18 (26)
5 1bb1_B Designed, thermostable 27.0 31 0.0011 21.4 1.7 19 16-34 8-26 (36)
6 2k6o_A Cathelicidin antimicrob 25.9 52 0.0018 20.7 2.6 20 17-36 15-34 (37)
7 2kdi_A Ubiquitin, vacuolar pro 23.2 84 0.0029 22.1 3.7 28 104-131 3-30 (114)
8 3lay_A Zinc resistance-associa 20.9 24 0.00081 27.9 0.4 24 13-36 67-90 (175)
9 2k5n_A Putative cold-shock pro 19.1 37 0.0013 23.1 1.0 11 107-117 13-23 (74)
10 3trt_A Vimentin; cytoskeleton, 16.7 49 0.0017 21.9 1.1 17 20-36 8-24 (77)
No 1
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=35.33 E-value=5.2 Score=31.97 Aligned_cols=18 Identities=44% Similarity=0.606 Sum_probs=15.0
Q ss_pred hccccccccCccCCCccc
Q 031075 95 YKDLNRINKDHHTTGTGF 112 (166)
Q Consensus 95 YkdL~~IDKqHHTTGtGF 112 (166)
|++|-..=|+|||||--+
T Consensus 148 ~~~L~~YVK~~httGl~W 165 (176)
T 1s0p_A 148 LKDLEKYIKQYHTTGLTW 165 (176)
T ss_dssp HHHHHHHHHHHSTTSCCC
T ss_pred HHHHHHHHHHhCCCCCcc
Confidence 688888889999999544
No 2
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=35.07 E-value=26 Score=20.61 Aligned_cols=18 Identities=17% Similarity=0.556 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhhcCCCC
Q 031075 20 AKMEDEVRENFENLAPKR 37 (166)
Q Consensus 20 ~~i~~evR~~Fd~~APKR 37 (166)
.+|-..||.+|..++|+-
T Consensus 6 kkIgQkIkdFf~~l~prt 23 (26)
T 2fcg_F 6 KRIVQRIKDFLRNLVPRT 23 (26)
T ss_dssp HHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 578889999999999963
No 3
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=30.75 E-value=9.3 Score=29.10 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=5.2
Q ss_pred CCCccce
Q 031075 107 TTGTGFI 113 (166)
Q Consensus 107 TTGtGFI 113 (166)
|-|||||
T Consensus 18 tGatG~i 24 (292)
T 1vl0_A 18 TGANGQL 24 (292)
T ss_dssp ESTTSHH
T ss_pred ECCCChH
Confidence 4578888
No 4
>2lma_A THP5 peptide; CD4+, immune system; NMR {Synthetic}
Probab=27.03 E-value=20 Score=20.92 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=12.7
Q ss_pred hhhhhhhhcccccccc
Q 031075 88 EFQETEYYKDLNRINK 103 (166)
Q Consensus 88 EFvETeYYkdL~~IDK 103 (166)
-|+.||||.-+.-|.-
T Consensus 3 pylqteyydvmtvisp 18 (26)
T 2lma_A 3 PYLQTEYYDVMTVISP 18 (26)
T ss_dssp TTHHHHHHTTSTTSSG
T ss_pred ccccceeeeeEEEeCC
Confidence 3788999998887753
No 5
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=26.98 E-value=31 Score=21.37 Aligned_cols=19 Identities=37% Similarity=0.601 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhhhcC
Q 031075 16 REEEAKMEDEVRENFENLA 34 (166)
Q Consensus 16 ~Eeq~~i~~evR~~Fd~~A 34 (166)
.|||+.|+++|.+--+.+|
T Consensus 8 keeqaaieeeiqaikeeia 26 (36)
T 1bb1_B 8 KEEQAAIEEEIQAIKEEIA 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3899999999988766554
No 6
>2k6o_A Cathelicidin antimicrobial peptide; human HOST defense peptide, human cathelicidin, LL-37, bacterial membrane targeting, antibiotic; NMR {Homo sapiens} PDB: 2lmf_A
Probab=25.90 E-value=52 Score=20.70 Aligned_cols=20 Identities=20% Similarity=0.519 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhhhcCCC
Q 031075 17 EEEAKMEDEVRENFENLAPK 36 (166)
Q Consensus 17 Eeq~~i~~evR~~Fd~~APK 36 (166)
+.-.+|-..|+++|-.++|+
T Consensus 15 ~~~kkIgQkIKdFf~~l~pr 34 (37)
T 2k6o_A 15 KEFKRIVQRIKDFLRNLVPR 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHhhCcc
Confidence 44568899999999999996
No 7
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=23.21 E-value=84 Score=22.12 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=23.9
Q ss_pred CccCCCccceEeeccCCceeEeecCCCC
Q 031075 104 DHHTTGTGFIKMENANGKSFILAPDNDD 131 (166)
Q Consensus 104 qHHTTGtGFIKve~~~g~~f~l~~~~~~ 131 (166)
+||--|.=+|.+..-+|..|.|..++..
T Consensus 3 ~~~~~~~~~i~vk~l~G~~~~l~v~~~~ 30 (114)
T 2kdi_A 3 HHHHHGEFQIFAKTLTGKTITLEVESSD 30 (114)
T ss_dssp CSCCCCCCEEEEEETTCCEEEEECCTTC
T ss_pred ccccCCcEEEEEEeCCCcEEEEEECCCC
Confidence 6788899999999989999999887655
No 8
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.92 E-value=24 Score=27.95 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHHhhhhcCCC
Q 031075 13 HLSREEEAKMEDEVRENFENLAPK 36 (166)
Q Consensus 13 ~l~~Eeq~~i~~evR~~Fd~~APK 36 (166)
-|++||++++.+-..+|+....+.
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~L 90 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSAL 90 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999887654
No 9
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=19.10 E-value=37 Score=23.06 Aligned_cols=11 Identities=64% Similarity=0.899 Sum_probs=8.7
Q ss_pred CCCccceEeec
Q 031075 107 TTGTGFIKMEN 117 (166)
Q Consensus 107 TTGtGFIKve~ 117 (166)
.-|.|||..+.
T Consensus 13 ~KGfGFI~~~d 23 (74)
T 2k5n_A 13 DKGFGFIKDEN 23 (74)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 46899999874
No 10
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=16.67 E-value=49 Score=21.88 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhhhcCCC
Q 031075 20 AKMEDEVRENFENLAPK 36 (166)
Q Consensus 20 ~~i~~evR~~Fd~~APK 36 (166)
.+|=++||++||.+|-|
T Consensus 8 ~~il~eiRaQYE~ia~k 24 (77)
T 3trt_A 8 TAAMRDVRQQYESVAAK 24 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45678999999999854
Done!