BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031077
         (166 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZSO|A Chain A, Hypothetical Protein From Plasmodium Falciparum
 pdb|1ZSO|B Chain B, Hypothetical Protein From Plasmodium Falciparum
          Length = 164

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 3   NCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCGCGELSQKETCVSLAETLPTQGGKG 62
           N ++ I A+LEN+  L     CDD  + + F ++     L++        + L     +G
Sbjct: 11  NTVVRIKAELENVKRL----FCDDE-YLWIFNIRDSTSSLTRDNIQFRKTDILEIPNSRG 65

Query: 63  TTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWK 122
           T N   K     +  T+  +  +    + E   +  +     F+CRG E +DF     + 
Sbjct: 66  TANFXIKWTEYPKYSTINFVNTKN-SCSYEEVNNNEWRDFASFECRGIELIDFFPSNNFI 124

Query: 123 VESLAGTQYEDIDLSGGDYAEYDEKGECPVMISNLRFK 160
           VE   G  Y D++LS  ++ +Y+E+ E  V I NL ++
Sbjct: 125 VEDTKGKLYYDVNLSDQNWCDYNEEHEXCVGIYNLEYE 162


>pdb|3ESG|A Chain A, Crystal Structure Of Hutd From Pseudomonas Fluorescens
           Sbw25
 pdb|3ESG|B Chain B, Crystal Structure Of Hutd From Pseudomonas Fluorescens
           Sbw25
          Length = 193

 Score = 27.3 bits (59), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 71  KFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPV 113
            F G +  +T+I G G  LT +  +  G  PL  F  RG   V
Sbjct: 62  SFAGYQRVITVIQGAGMVLTVDGEEQRGLLPLQPFAFRGDSQV 104


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.139    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,241,268
Number of Sequences: 62578
Number of extensions: 219418
Number of successful extensions: 416
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 5
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)