Query 031077
Match_columns 166
No_of_seqs 105 out of 236
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 13:59:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zso_A Hypothetical protein; s 100.0 5.8E-67 2E-71 413.0 20.2 153 1-162 9-164 (164)
2 3j20_W 30S ribosomal protein S 93.0 0.065 2.2E-06 35.5 2.8 34 27-76 9-43 (63)
3 1qxf_A GR2, 30S ribosomal prot 91.3 0.11 3.8E-06 34.6 2.3 32 30-76 3-35 (66)
4 2xzm_6 RPS27E; ribosome, trans 90.2 0.18 6.2E-06 34.9 2.6 34 27-76 26-60 (81)
5 3iz6_X 40S ribosomal protein S 90.0 0.1 3.6E-06 36.5 1.3 34 27-76 30-64 (86)
6 3u5c_b RP61, YS20, 40S ribosom 89.1 0.17 5.8E-06 35.1 1.8 34 27-76 28-62 (82)
7 2x5c_A Hypothetical protein OR 60.0 6.6 0.00023 28.1 2.9 21 66-86 51-71 (131)
8 2elu_A Zinc finger protein 406 54.3 3.1 0.00011 24.1 0.3 18 59-76 1-18 (37)
9 1k81_A EIF-2-beta, probable tr 41.9 17 0.00057 20.9 2.1 16 64-79 18-33 (36)
10 2e2z_A TIM15; protein import, 39.3 44 0.0015 23.7 4.4 40 29-77 8-48 (100)
11 1lko_A Rubrerythrin all-iron(I 37.0 18 0.00062 27.8 2.4 25 34-76 155-180 (191)
12 3o9x_A Uncharacterized HTH-typ 35.6 32 0.0011 23.9 3.4 40 35-76 3-45 (133)
13 2k5c_A Uncharacterized protein 32.9 15 0.0005 25.6 1.0 47 31-78 5-62 (95)
14 1ltl_A DNA replication initiat 31.3 81 0.0028 25.3 5.5 56 7-83 115-171 (279)
15 1vq8_Z 50S ribosomal protein L 30.6 30 0.001 23.5 2.3 10 67-76 45-54 (83)
16 3kup_A Chromobox protein homol 27.7 39 0.0013 21.7 2.4 18 58-75 22-39 (65)
17 3nhe_A Ubiquitin carboxyl-term 25.5 2.4E+02 0.0083 22.0 8.2 16 138-153 310-325 (348)
18 1yuz_A Nigerythrin; rubrythrin 25.2 24 0.00081 27.5 1.2 24 34-76 171-195 (202)
19 1wii_A Hypothetical UPF0222 pr 24.4 32 0.0011 23.6 1.5 32 67-111 23-54 (85)
20 3pwf_A Rubrerythrin; non heme 24.0 29 0.001 26.3 1.4 22 36-76 140-162 (170)
21 1x3z_A Peptide: N-glycanase; h 23.5 38 0.0013 28.8 2.2 49 29-78 114-166 (335)
22 3vhs_A ATPase wrnip1; zinc fin 23.4 31 0.0011 18.7 1.0 12 33-44 5-17 (29)
23 3cc2_Z 50S ribosomal protein L 22.0 48 0.0016 24.1 2.2 10 67-76 78-87 (116)
24 1pft_A TFIIB, PFTFIIBN; N-term 21.5 42 0.0015 19.9 1.6 33 113-145 16-49 (50)
25 2fiy_A Protein FDHE homolog; F 21.0 64 0.0022 26.9 3.1 62 12-80 203-266 (309)
26 2cr8_A MDM4 protein; ZF-ranbp 20.9 38 0.0013 21.3 1.2 19 59-78 4-22 (53)
27 2liy_A Epidermal patterning fa 20.5 66 0.0023 19.3 2.2 18 69-86 12-29 (45)
No 1
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=100.00 E-value=5.8e-67 Score=413.04 Aligned_cols=153 Identities=23% Similarity=0.400 Sum_probs=144.9
Q ss_pred CceEEEEEEEEecceeeeeeCCCCCCCCceEEEEEEec-CCceecccEEEecCeeeeeCCCCceeeEEEEeccCCceeEE
Q 031077 1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTV 79 (166)
Q Consensus 1 Mv~~~L~vkAeLeNV~~l~p~~~~~~~~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~r~~si 79 (166)
|++++|+++|+|+||++|+|. |+|.|+|||||+ |||+|+| |+|+++|+++||||||+||||+|||+|+|++||
T Consensus 9 ~~~~~L~i~AelenVt~L~p~-----~~~~~~fkvkC~~C~E~~~k-v~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si 82 (164)
T 1zso_A 9 MKNTVVRIKAELENVKRLFCD-----DEYLWIFNIRDSTSSLTRDN-IQFRKTDILEIPNSRGTANFMIKWTEYPKYSTI 82 (164)
T ss_dssp CCCEEEEEEEEEESEEEEECC-----TTCCEEEEEEETTSSCEEEE-EEECTTCBEECTTSSCEESEEECCSSSSCCEEE
T ss_pred eEEEEEEEEEEEcCcceeecC-----CCcEEEEEEEECCCCcccCC-EEEcchheeecCCCCcceeEEEeccccCCcceE
Confidence 999999999999999999997 458999999999 9999999 999999999999999999999999999999999
Q ss_pred EEecCCC-cccccccccCCCcccEEEEEecCceEEeeEeCCcEEEEE-eCCCEEEeeecCCCceeeecCCCCceEEEeee
Q 031077 80 TMIPGRG-KPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVES-LAGTQYEDIDLSGGDYAEYDEKGECPVMISNL 157 (166)
Q Consensus 80 ~i~~~~~-~~~~~e~~~~~~~~~i~~fdCRG~E~~~f~p~~~w~~~~-~sG~~f~dvdLse~eW~dYDEk~~~~VsI~~~ 157 (166)
+|++++. ++|+.+ ++++|++|++||||||||++|+|++||.|++ .|| +|.||||+||||+|||||++++|||++|
T Consensus 83 ~i~~~~~~~~y~~~--d~~k~~~i~~FDCRGlEp~eF~p~~~w~a~~~esG-~f~dvDLse~eW~DYDEk~~~~VsI~e~ 159 (164)
T 1zso_A 83 NFVNTKNSCSYEEV--NNNEWRDFASFECRGIELIDFFPSNNFIVEDTKGK-LYYDVNLSDQNWCDYNEEHEMCVGIYNL 159 (164)
T ss_dssp EEECCTTTTEEEGG--GTTSCEEEEEEEEESEEEEEECCCSCEEEEETTSC-EEEEECCTTSCEEEEETTTTEEEEEEEE
T ss_pred EEEeCCCCcccccc--cCCCceEEEEEECCCeeeEEEecCCcEEEEECCCC-cEEeeecCCCceeccccCCCCeEEEEEE
Confidence 9999973 278775 4589999999999999999999999999999 588 9999999999999999999999999999
Q ss_pred EEEEE
Q 031077 158 RFKFE 162 (166)
Q Consensus 158 ~~~f~ 162 (166)
+|+|.
T Consensus 160 ~~~f~ 164 (164)
T 1zso_A 160 EYEVN 164 (164)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99984
No 2
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=93.03 E-value=0.065 Score=35.53 Aligned_cols=34 Identities=29% Similarity=0.720 Sum_probs=26.5
Q ss_pred CCceEEEEEEec-CCceecccEEEecCeeeeeCCCCceeeEEEEeccCCce
Q 031077 27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (166)
Q Consensus 27 ~~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~r~ 76 (166)
|+ .||++|||. |+.+. +.+ +.|..+.+|..|++.
T Consensus 9 Pn-S~Fm~VkCp~C~~~q---~VF------------Sha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 9 PR-SRFLRVKCIDCGNEQ---IVF------------SHPATKVRCLICGAT 43 (63)
T ss_dssp CS-CCEEEEECSSSCCEE---EEE------------SSCSSCEECSSSCCE
T ss_pred CC-CcEEEEECCCCCCee---EEE------------ecCCeEEEccCcCCE
Confidence 54 899999999 99885 333 345668899999874
No 3
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=91.29 E-value=0.11 Score=34.65 Aligned_cols=32 Identities=38% Similarity=0.744 Sum_probs=25.0
Q ss_pred eEEEEEEec-CCceecccEEEecCeeeeeCCCCceeeEEEEeccCCce
Q 031077 30 SYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (166)
Q Consensus 30 ~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~r~ 76 (166)
.||++|||. |+.+. +.+ +.|..+.+|..|++.
T Consensus 3 S~Fm~VKCp~C~niq---~VF------------ShA~tvV~C~~Cg~~ 35 (66)
T 1qxf_A 3 SRFVKVKCPDCEHEQ---VIF------------DHPSTIVKCIICGRT 35 (66)
T ss_dssp CCEEEEECTTTCCEE---EEE------------SSCSSCEECSSSCCE
T ss_pred ceeEEEECCCCCCce---EEE------------ecCceEEEcccCCCE
Confidence 578999999 99885 333 345668899999874
No 4
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=90.16 E-value=0.18 Score=34.92 Aligned_cols=34 Identities=29% Similarity=0.724 Sum_probs=26.5
Q ss_pred CCceEEEEEEec-CCceecccEEEecCeeeeeCCCCceeeEEEEeccCCce
Q 031077 27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (166)
Q Consensus 27 ~~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~r~ 76 (166)
|+ .||++|+|. |+.+. +.+ +.|..+..|..|+..
T Consensus 26 Pn-S~Fm~VkCp~C~n~q---~VF------------ShA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 26 PN-SYFMDVKCAQCQNIQ---MIF------------SNAQSTIICEKCSAI 60 (81)
T ss_dssp CS-CCEEEEECSSSCCEE---EEE------------TTCSSCEECSSSCCE
T ss_pred CC-CcEEEeECCCCCCee---EEE------------ecCccEEEccCCCCE
Confidence 53 899999999 99885 333 356678899999874
No 5
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=89.97 E-value=0.1 Score=36.49 Aligned_cols=34 Identities=29% Similarity=0.710 Sum_probs=24.1
Q ss_pred CCceEEEEEEec-CCceecccEEEecCeeeeeCCCCceeeEEEEeccCCce
Q 031077 27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (166)
Q Consensus 27 ~~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~r~ 76 (166)
|+ .||++|+|. |+.+. +.+ +.|..+..|..|+..
T Consensus 30 Pn-S~Fm~VkCp~C~~~~---~VF------------ShA~t~V~C~~Cgtv 64 (86)
T 3iz6_X 30 PN-SFFMDVKCQGCFNIT---TVF------------SHSQTVVVCPGCQTV 64 (86)
T ss_dssp ----CEEEEECTTTCCEE---EEE------------TTCSSCCCCSSSCCC
T ss_pred CC-CcEeEEECCCCCCee---EEE------------ecCCcEEEccCCCCE
Confidence 53 899999999 99885 333 345667899999874
No 6
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=89.12 E-value=0.17 Score=35.14 Aligned_cols=34 Identities=29% Similarity=0.725 Sum_probs=26.2
Q ss_pred CCceEEEEEEec-CCceecccEEEecCeeeeeCCCCceeeEEEEeccCCce
Q 031077 27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (166)
Q Consensus 27 ~~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~r~ 76 (166)
|+ .||++|+|. |+.+. +.+ +.|..+..|..|+..
T Consensus 28 Pn-S~Fm~VkCp~C~~~q---~VF------------Sha~t~V~C~~Cg~~ 62 (82)
T 3u5c_b 28 PR-SYFLDVKCPGCLNIT---TVF------------SHAQTAVTCESCSTI 62 (82)
T ss_dssp CC-CCEEEEECTTSCSCE---EEE------------SBCSSCCCCSSSCCC
T ss_pred CC-CcEEEEECCCCCCee---EEE------------ecCCeEEEccccCCE
Confidence 54 899999999 99885 333 345668899999874
No 7
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=60.03 E-value=6.6 Score=28.13 Aligned_cols=21 Identities=33% Similarity=0.833 Sum_probs=18.6
Q ss_pred EEEEeccCCceeEEEEecCCC
Q 031077 66 LIQKCKFCGREGTVTMIPGRG 86 (166)
Q Consensus 66 fv~KCk~C~r~~si~i~~~~~ 86 (166)
+..||+-|+.++|++|+..++
T Consensus 51 mhakcprcgaegsvsivetkn 71 (131)
T 2x5c_A 51 MHAKCPRCGAEGSVSIVETKN 71 (131)
T ss_dssp CEEECTTTSCEEEEEEEECTT
T ss_pred eeccCCCCCCccceEEEEecC
Confidence 567999999999999998764
No 8
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=54.27 E-value=3.1 Score=24.07 Aligned_cols=18 Identities=33% Similarity=1.047 Sum_probs=14.5
Q ss_pred CCCceeeEEEEeccCCce
Q 031077 59 GGKGTTNLIQKCKFCGRE 76 (166)
Q Consensus 59 gsrg~aNfv~KCk~C~r~ 76 (166)
||.|..-+-..|++|++.
T Consensus 1 gssgsskikqhcrfckkk 18 (37)
T 2elu_A 1 GSSGSSGIKQHCRFCKKK 18 (37)
T ss_dssp CCSCCCCCCCEETTTTEE
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 566777778899999985
No 9
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=41.86 E-value=17 Score=20.86 Aligned_cols=16 Identities=25% Similarity=0.519 Sum_probs=13.5
Q ss_pred eeEEEEeccCCceeEE
Q 031077 64 TNLIQKCKFCGREGTV 79 (166)
Q Consensus 64 aNfv~KCk~C~r~~si 79 (166)
-.+.+||+.|+...++
T Consensus 18 ~~~~l~C~aCG~~~~v 33 (36)
T 1k81_A 18 RVHLLKCMACGAIRPI 33 (36)
T ss_dssp TEEEEEEETTTEEEEE
T ss_pred CcEEEEhhcCCCcccc
Confidence 3588999999998876
No 10
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=39.31 E-value=44 Score=23.70 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=23.3
Q ss_pred ceEEEEEEec-CCceecccEEEecCeeeeeCCCCceeeEEEEeccCCcee
Q 031077 29 FSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREG 77 (166)
Q Consensus 29 ~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~r~~ 77 (166)
-.|.+.+.|. |+..+.+ .|++.-= -+|. ...+|..|+...
T Consensus 8 ~~~~l~FTC~~C~tRs~k--~iSk~aY-----~~Gv--Viv~C~gC~n~H 48 (100)
T 2e2z_A 8 PKMMIAFTCKKCNTRSSH--TMSKQAY-----EKGT--VLISCPHCKVRH 48 (100)
T ss_dssp CEEEEEEEETTTTEEEEE--EEEHHHH-----HTSE--EEEECTTTCCEE
T ss_pred CcEEEEEEccCCCCcchh--hcCHHHh-----hCCE--EEEEcCCCccce
Confidence 4677888888 8876543 3333100 1243 466888887753
No 11
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=37.03 E-value=18 Score=27.79 Aligned_cols=25 Identities=24% Similarity=0.664 Sum_probs=18.1
Q ss_pred EEEec-CCceecccEEEecCeeeeeCCCCceeeEEEEeccCCce
Q 031077 34 KLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (166)
Q Consensus 34 kvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~r~ 76 (166)
.-+|+ ||.+++.. +.|. +|+.|+..
T Consensus 155 ~~~C~~CG~~~~g~---------~~p~---------~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGT---------GAPE---------LCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEE---------ECCS---------BCTTTCCB
T ss_pred eEEECCCCCEeeCC---------CCCC---------CCCCCcCC
Confidence 56899 99998632 3443 89999875
No 12
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=35.61 E-value=32 Score=23.95 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=23.7
Q ss_pred EEec-CCceecccEEEecCeeeeeCCCCcee-e-EEEEeccCCce
Q 031077 35 LKCG-CGELSQKETCVSLAETLPTQGGKGTT-N-LIQKCKFCGRE 76 (166)
Q Consensus 35 vkCt-C~e~~~~~v~i~~~e~~e~~gsrg~a-N-fv~KCk~C~r~ 76 (166)
.+|. |+..+- +.......+++.|-.-.. + =.+.|..|+.+
T Consensus 3 M~Cp~Cg~~~~--~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~ 45 (133)
T 3o9x_A 3 MKCPVCHQGEM--VSGIKDIPYTFRGRKTVLKGIHGLYCVHCEES 45 (133)
T ss_dssp CBCTTTSSSBE--EEEEEEEEEEETTEEEEEEEEEEEEESSSSCE
T ss_pred cCCCcCCCCce--eeceEEEEEEECCEEEEECCCceeECCCCCCE
Confidence 4799 987643 233334555665544333 3 36788888876
No 13
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=32.89 E-value=15 Score=25.57 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=25.1
Q ss_pred EEEEEEec-CCceecccEEEec-----CeeeeeCCCCc-----eeeEEEEeccCCceeE
Q 031077 31 YFFKLKCG-CGELSQKETCVSL-----AETLPTQGGKG-----TTNLIQKCKFCGREGT 78 (166)
Q Consensus 31 ~~fkvkCt-C~e~~~~~v~i~~-----~e~~e~~gsrg-----~aNfv~KCk~C~r~~s 78 (166)
-.-..+|. ||..- +|--+-. ..-.++=..|+ --.|++||+.|+-+-.
T Consensus 5 ~~~~~~~PlCG~~L-~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFy 62 (95)
T 2k5c_A 5 HHHMAKCPICGSPL-KWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFY 62 (95)
T ss_dssp ---CEECSSSCCEE-CHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEE
T ss_pred ccccccCCcCCCcc-CHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHh
Confidence 34457899 99875 4422211 11111212232 2369999999998844
No 14
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=31.34 E-value=81 Score=25.31 Aligned_cols=56 Identities=13% Similarity=0.258 Sum_probs=31.2
Q ss_pred EEEEEecceeeeeeCCCCCCCCceEEEEEEec-CCceecccEEEecCeeeeeCCCCceeeEEEEeccCCceeEEEEec
Q 031077 7 MISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIP 83 (166)
Q Consensus 7 ~vkAeLeNV~~l~p~~~~~~~~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~r~~si~i~~ 83 (166)
.|++-.--++.++| ..-.....|. |+... .+.+. + |....-.+|+.|+..+ ..+..
T Consensus 115 ~v~GiV~r~S~V~p--------~~~~~~f~C~~C~~~~--~v~~~--------~--~~~~~P~~Cp~C~~~~-f~l~~ 171 (279)
T 1ltl_A 115 AVDGIVRKTDEIRP--------RIVKAVFECRGCMRHH--AVTQS--------T--NMITEPSLCSECGGRS-FRLLQ 171 (279)
T ss_dssp EEEEEEEEECCCEE--------EEEEEEEEETTTCCEE--EEECS--------S--SSCCCCSCCTTTCCCC-EEECG
T ss_pred EEEEEEEEecceEE--------EEEEEEEEcCCCCCEE--EEEec--------C--CcccCCCcCCCCCCCC-cEEec
Confidence 45555555566666 3566778899 99542 22221 1 1222234788898876 44443
No 15
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=30.57 E-value=30 Score=23.51 Aligned_cols=10 Identities=30% Similarity=1.016 Sum_probs=9.0
Q ss_pred EEEeccCCce
Q 031077 67 IQKCKFCGRE 76 (166)
Q Consensus 67 v~KCk~C~r~ 76 (166)
.|+|+.|++.
T Consensus 45 iW~C~~Cg~~ 54 (83)
T 1vq8_Z 45 IWQCSYCDYK 54 (83)
T ss_dssp EEEETTTCCE
T ss_pred eEECCCCCCE
Confidence 8999999985
No 16
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=27.70 E-value=39 Score=21.67 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=15.6
Q ss_pred CCCCceeeEEEEeccCCc
Q 031077 58 QGGKGTTNLIQKCKFCGR 75 (166)
Q Consensus 58 ~gsrg~aNfv~KCk~C~r 75 (166)
..++|+-+|.+|||.|..
T Consensus 22 ~~~~Gel~fLvKWKg~~~ 39 (65)
T 3kup_A 22 TDSSGELMFLMKWKDSDE 39 (65)
T ss_dssp ECTTSSCEEEEEETTCSC
T ss_pred EcCCCcEEEEEEECCCCh
Confidence 356899999999999986
No 17
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=25.48 E-value=2.4e+02 Score=22.01 Aligned_cols=16 Identities=13% Similarity=0.570 Sum_probs=11.4
Q ss_pred CCceeeecCCCCceEE
Q 031077 138 GGDYAEYDEKGECPVM 153 (166)
Q Consensus 138 e~eW~dYDEk~~~~Vs 153 (166)
.+.|+-||+..-.+|+
T Consensus 310 ~~~W~~~nD~~V~~v~ 325 (348)
T 3nhe_A 310 TGEWHTFNDSSVTPMS 325 (348)
T ss_dssp TCCEEEEETTEEEEEC
T ss_pred CCcEEEEeCCCceECC
Confidence 5789999987544443
No 18
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=25.21 E-value=24 Score=27.52 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=17.5
Q ss_pred EEEec-CCceecccEEEecCeeeeeCCCCceeeEEEEeccCCce
Q 031077 34 KLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (166)
Q Consensus 34 kvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~r~ 76 (166)
.-+|+ ||.++.. +.| ++|+.|+..
T Consensus 171 ~~~C~~CG~i~~g----------~~p---------~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG----------EDF---------EKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES----------SCC---------SBCTTTCCB
T ss_pred EEEECCCCCEEcC----------cCC---------CCCCCCCCC
Confidence 46899 9999863 122 799999864
No 19
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=24.38 E-value=32 Score=23.56 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=22.0
Q ss_pred EEEeccCCceeEEEEecCCCcccccccccCCCcccEEEEEecCce
Q 031077 67 IQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYE 111 (166)
Q Consensus 67 v~KCk~C~r~~si~i~~~~~~~~~~e~~~~~~~~~i~~fdCRG~E 111 (166)
++.|++|+.+.|+.+.-.+ -.-+..+.||=+.
T Consensus 23 ~F~CPfCnh~~sV~vkidk-------------~~~~g~l~C~~Cg 54 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMDR-------------ARNTGVISCTVCL 54 (85)
T ss_dssp CCCCTTTCCSSCEEEEEET-------------TTTEEEEEESSSC
T ss_pred eEcCCCCCCCCeEEEEEEc-------------cCCEEEEEcccCC
Confidence 5678999988777775422 1227788888775
No 20
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=24.03 E-value=29 Score=26.33 Aligned_cols=22 Identities=27% Similarity=0.712 Sum_probs=16.0
Q ss_pred Eec-CCceecccEEEecCeeeeeCCCCceeeEEEEeccCCce
Q 031077 36 KCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE 76 (166)
Q Consensus 36 kCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~r~ 76 (166)
+|+ ||.++.. +.|. +|+.|+..
T Consensus 140 ~C~~CG~i~~~----------~~p~---------~CP~Cg~~ 162 (170)
T 3pwf_A 140 ICPICGYTAVD----------EAPE---------YCPVCGAP 162 (170)
T ss_dssp ECTTTCCEEES----------CCCS---------BCTTTCCB
T ss_pred EeCCCCCeeCC----------CCCC---------CCCCCCCC
Confidence 499 9999852 2443 89999864
No 21
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=23.49 E-value=38 Score=28.85 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=28.9
Q ss_pred ceEEEEEEec-CCceecccEE---EecCeeeeeCCCCceeeEEEEeccCCceeE
Q 031077 29 FSYFFKLKCG-CGELSQKETC---VSLAETLPTQGGKGTTNLIQKCKFCGREGT 78 (166)
Q Consensus 29 ~~~~fkvkCt-C~e~~~~~v~---i~~~e~~e~~gsrg~aNfv~KCk~C~r~~s 78 (166)
|.|.-+..|+ ||....+.+. ..+....|..++-+. =-+.+|+.|+....
T Consensus 114 F~wvn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~-vE~y~C~~C~~~~r 166 (335)
T 1x3z_A 114 FKWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGT-VEIYKCNRCGNITR 166 (335)
T ss_dssp CEECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEE-EEEEEETTTCCEEE
T ss_pred CEeeCCCCccccCCCccccccccCCCCCChhhhccCCce-EEEeecCCCCcccc
Confidence 7788889999 9987544333 221111223332222 24679999998744
No 22
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=23.36 E-value=31 Score=18.75 Aligned_cols=12 Identities=25% Similarity=0.974 Sum_probs=9.2
Q ss_pred EEEEec-CCceec
Q 031077 33 FKLKCG-CGELSQ 44 (166)
Q Consensus 33 fkvkCt-C~e~~~ 44 (166)
|+|+|. |...-|
T Consensus 5 f~vqcpvcqq~mp 17 (29)
T 3vhs_A 5 FQVQCPVCQQMMP 17 (29)
T ss_dssp CEEECTTTCCEEE
T ss_pred eeeeChHHHHhCc
Confidence 789999 987544
No 23
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=22.04 E-value=48 Score=24.10 Aligned_cols=10 Identities=30% Similarity=1.016 Sum_probs=9.2
Q ss_pred EEEeccCCce
Q 031077 67 IQKCKFCGRE 76 (166)
Q Consensus 67 v~KCk~C~r~ 76 (166)
+|+|+.|++.
T Consensus 78 IW~C~~Cgk~ 87 (116)
T 3cc2_Z 78 IWQCSYCDYK 87 (116)
T ss_dssp EEEETTTCCE
T ss_pred eEECCCCCCE
Confidence 8999999986
No 24
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=21.49 E-value=42 Score=19.87 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=17.6
Q ss_pred EeeEeCCcEEEEEeCCCEEEeeecCC-Cceeeec
Q 031077 113 VDFVFGVGWKVESLAGTQYEDIDLSG-GDYAEYD 145 (166)
Q Consensus 113 ~~f~p~~~w~~~~~sG~~f~dvdLse-~eW~dYD 145 (166)
+.|.+..|-.+-..-|.+|.+-.+.. .||--|+
T Consensus 16 l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~f~ 49 (50)
T 1pft_A 16 LIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFD 49 (50)
T ss_dssp EEEETTTTEEEESSSCCBCCCCCCCCCSSSSCCC
T ss_pred eEEcCCCCeEECcccCCcccccccccCCcccccC
Confidence 45555545433344677676533432 3787665
No 25
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.98 E-value=64 Score=26.85 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=34.8
Q ss_pred ecceeeeeeCCCCCCCCceEEE-EEEec-CCceecccEEEecCeeeeeCCCCceeeEEEEeccCCceeEEE
Q 031077 12 LENLTNLQPQGGCDDPNFSYFF-KLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVT 80 (166)
Q Consensus 12 LeNV~~l~p~~~~~~~~~~~~f-kvkCt-C~e~~~~~v~i~~~e~~e~~gsrg~aNfv~KCk~C~r~~si~ 80 (166)
-+|-.-|...- =.++|.| +++|+ ||+. .+--+.+..+.+.-++ ..+--+..|..|+.-.-+.
T Consensus 203 ~~G~R~l~Cs~----C~t~W~~~R~~C~~Cg~~-~~l~y~~~e~~~~~~~--~~~~r~e~C~~C~~YlK~~ 266 (309)
T 2fiy_A 203 ETGLRYLSCSL----CACEWHYVRIKCSHCEES-KHLAYLSLEHDGQPAE--KAVLRAETCPSCQGYLKQF 266 (309)
T ss_dssp -CCEEEEEETT----TCCEEECCTTSCSSSCCC-SCCEEECCCC-CCCST--TCSEEEEEETTTTEEEEEE
T ss_pred CCCcEEEEeCC----CCCEEeecCcCCcCCCCC-CCeeEEEecCccccCC--CcceEEEEcccccchHhhh
Confidence 35555566532 1367876 48899 9998 3444444322100011 1445688999999764443
No 26
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=20.89 E-value=38 Score=21.28 Aligned_cols=19 Identities=21% Similarity=0.566 Sum_probs=13.0
Q ss_pred CCCceeeEEEEeccCCceeE
Q 031077 59 GGKGTTNLIQKCKFCGREGT 78 (166)
Q Consensus 59 gsrg~aNfv~KCk~C~r~~s 78 (166)
||.|.+- .|||..|++.|+
T Consensus 4 ~~~~~eD-~WkC~~C~k~N~ 22 (53)
T 2cr8_A 4 GSSGSED-EWQCTECKKFNS 22 (53)
T ss_dssp CSSCCSC-CEECSSSCCEEC
T ss_pred CcCCCcc-eeecccccccCC
Confidence 4444444 689999998654
No 27
>2liy_A Epidermal patterning factor-like protein 9; plant peptide hormone, EPFL family, stomatal density, positi regulator, hormone; NMR {Arabidopsis thaliana}
Probab=20.48 E-value=66 Score=19.33 Aligned_cols=18 Identities=22% Similarity=0.580 Sum_probs=15.8
Q ss_pred EeccCCceeEEEEecCCC
Q 031077 69 KCKFCGREGTVTMIPGRG 86 (166)
Q Consensus 69 KCk~C~r~~si~i~~~~~ 86 (166)
-|++|+..+++.-+|..+
T Consensus 12 ECrgCr~~C~aeqvPvd~ 29 (45)
T 2liy_A 12 ECRGCRYKCRAEQVPVEG 29 (45)
T ss_dssp GGTTCCSEEEEEEEESSC
T ss_pred hhcCcccccceeeccccC
Confidence 599999999999998754
Done!