BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031078
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDI 140
++ + +EF++ + K K+ I FTA+WCGPC+FI PV E + K P K+D+
Sbjct: 16 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDV 75
Query: 141 DQKGLESTLSKLNISAV 157
D+ L+ K N+ A+
Sbjct: 76 DE--LKEVAEKYNVEAM 90
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDI 140
++ + +EF++ + KD I FTA+WCGPC+ I PV E + K P K+D+
Sbjct: 8 VIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDV 67
Query: 141 DQKGLESTLSKLNISAV 157
D+ L+ N+ A+
Sbjct: 68 DE--LKDVAEAYNVEAM 82
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 72 FSSPDGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP 131
+S +G ++ + E +N L K + + FTA+WCGPC+FI P +L+ K P
Sbjct: 11 MASEEG--QVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP 68
Query: 132 HVTTYKIDIDQKGLESTLSKLNISAV 157
+V K+D D+ L+S S I A+
Sbjct: 69 NVLFLKVDTDE--LKSVASDWAIQAM 92
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG 144
++ EF+S++ + D L + F A WCGPCK I P+I + S ++P YK+D+D+ G
Sbjct: 6 KTASEFDSAIAQ---DKL-VVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELG 61
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG 144
++ EF+S++ + D L + F A WCGPCK I P+I + S ++P YK+D+D+ G
Sbjct: 12 KTASEFDSAIAQ---DKL-VVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELG 67
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAV 157
FTA+WC PCK I P+ EL+ K P+VT K+D+D+ L++ + N+ A+
Sbjct: 33 FTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDE--LKAVAEEWNVEAM 80
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAV 157
F A WCGPCK I P+ ELS K+ + K+D+D+ LE T K NISA+
Sbjct: 40 FFATWCGPCKTIAPLFKELSEKYDAIFV-KVDVDK--LEETARKYNISAM 86
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAV 157
F A WCGPCK I P+ ELS K+ + K+D+D+ LE T K NISA+
Sbjct: 31 FFATWCGPCKTIAPLFKELSEKYDAIFV-KVDVDK--LEETARKYNISAM 77
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG 144
++ EF+S++ + D L + F A WCGP K I P+I + S ++P YK+D+D+ G
Sbjct: 12 KTASEFDSAIAQ---DKL-VVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELG 67
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142
++S E++S+L D L + +F A WCGPCK I P+I + + ++ YK+D+D+
Sbjct: 12 LKSASEYDSALAS--GDKLVVVDFF-ATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDE 67
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142
++S E++S+L D L + +F A WCGPCK I P+I + + ++ YK+D+D+
Sbjct: 5 LKSASEYDSALAS--GDKLVVVDFF-ATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDE 60
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKID 139
++ + S E++ + + + FTA+WCGPC+ + PV +L+ K P+ K+D
Sbjct: 13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVD 72
Query: 140 IDQ 142
+D+
Sbjct: 73 VDE 75
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELS 127
+++VI+S +++ L K K++ P + FTA WCGPCK I P+ LS
Sbjct: 2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLS 50
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELS 127
+++VI+S +++ L K K++ P + FTA WCGPCK I P+ LS
Sbjct: 2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLS 50
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKID 139
N+ +I + E ++ L + D + F+A WCGPCK I P ELS +P + ID
Sbjct: 25 NVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVID 84
Query: 140 IDQ 142
+D+
Sbjct: 85 VDE 87
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQK 143
PAI F A WCGPCK + P++ ELS ++ + YK+++D++
Sbjct: 53 PAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKE 94
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQK 143
PAI F A WCGPCK + P++ ELS ++ + YK+++D++
Sbjct: 53 PAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKE 94
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAK-HPHVTTYKIDID 141
I+ G +F +V + P + F A WCGPCK + P + ++ AK H V K+DID
Sbjct: 17 IQDGPDFQD---RVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDID 72
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142
++ E+F L + + + FY A WCGPCK I P + ELS V K+D+D+
Sbjct: 5 VKDQEDFTKQLNEAGNKLVVIDFY--ATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDE 61
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQK 143
PAI F A WCGPCK + P++ EL+ ++ + YK+D +++
Sbjct: 40 PAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKE 81
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141
IES F +L D + + F+A WCGPCK I P LS K+ +V ++D+D
Sbjct: 5 IESKTAFQEALDAAGDKLV--VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD 60
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142
++S E++S+L D L + +F A WCGP K I P+I + + ++ YK+D+D+
Sbjct: 5 LKSASEYDSALAS--GDKLVVVDFF-ATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDE 60
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142
++S E++S+L D L + +F A WCGP K I P+I + + ++ YK+D+D+
Sbjct: 13 LKSASEYDSALAS--GDKLVVVDFF-ATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDE 68
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141
IES F +L D + + F+A WCGPCK I P LS K+ +V ++D+D
Sbjct: 5 IESKTAFQEALDAAGDKLV--VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD 60
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141
IES F +L D + + F+A WCGPCK I P LS K+ +V ++D+D
Sbjct: 5 IESKTAFQEALDAAGDKLV--VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD 60
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141
IES F +L D + + F+A WCGPCK I P LS K+ +V ++D+D
Sbjct: 5 IESKTAFQEALDAAGDKLV--VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD 60
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141
IES F +L D + + F+A WCGPCK I P LS K+ +V ++D+D
Sbjct: 5 IESKTAFQEALDAAGDKLV--VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD 60
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141
IES F +L D + + F+A WCGPCK I P LS K+ +V ++D+D
Sbjct: 5 IESKTAFQEALDAAGDKLV--VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD 60
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 97 VKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
V + +P + F A WCGPCK I PVI EL+ ++ + YK++ D+
Sbjct: 14 VLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 60
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 97 VKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
V + +P + F A WCGPCK I PVI EL+ ++ + YK++ D+
Sbjct: 13 VLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 59
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%)
Query: 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKID 139
++ + S E++ + + + FTA+WCGP + + PV +L+ K P+ K+D
Sbjct: 16 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVD 75
Query: 140 IDQ 142
+D+
Sbjct: 76 VDE 78
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141
IES F +L D + + F+A WCGPCK I P LS K+ +V ++D+D
Sbjct: 5 IESKTAFQEALDAAGDKLV--VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD 60
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAV 157
F A WCGPC+ I P + L+ + P V K+D+DQ E +K +++A+
Sbjct: 26 FFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQN--EEAAAKYSVTAM 73
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
P + F AAWCGPC+ + PV+ E + H VT K+++D+
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE 59
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
P + F AAWCGPC+ + PV+ E + H VT K+++D+
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE 59
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
P + F AAWCGPC+ + PV+ E + H VT K+++D+
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE 59
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
P + F AAWCGPC+ + PV+ E + H VT K+++D+
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE 59
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDID 141
P + F A WCGPCK + PV+ E++ + +T K+D+D
Sbjct: 27 PVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVD 66
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKID 139
N+ +I + E ++ L + D + F+A WCGP + I P ELS +P + ID
Sbjct: 25 NVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVID 84
Query: 140 IDQ 142
+D+
Sbjct: 85 VDE 87
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDID 141
P + F A WCGPCK + PV+ E++ + +T K+D+D
Sbjct: 32 PVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVD 71
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141
IES F +L D + + F+A WCGPCK I P LS K+ +V ++D++
Sbjct: 5 IESKTAFQEALDAAGDKLV--VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVN 60
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 105 IFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQKGLESTLSKLNISAV 157
+ F A WCGPCK I P + ELS + +V K+D+D+ E + NIS++
Sbjct: 29 VLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE--CEDIAMEYNISSM 80
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 105 IFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQKGLESTLSKLNISAV 157
+ F A WCGPCK I P + ELS + +V K+D+D+ E + NIS++
Sbjct: 24 VLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE--CEDIAMEYNISSM 75
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSA--KHPHVTTY 136
++ VI S ++F G K + F A WCGPCK I PV ++S V Y
Sbjct: 15 GSVQVISSYDQFKQVTGGDK----VVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFY 70
Query: 137 KIDIDQK 143
K+D+D++
Sbjct: 71 KVDVDEQ 77
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ ++ +T K++IDQ
Sbjct: 37 FWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 72
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141
IES F +L D + + F+A WCGP K I P LS K+ +V ++D+D
Sbjct: 5 IESKTAFQEALDAAGDKLV--VVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVD 60
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I PV+ EL+A + K+D+D+
Sbjct: 27 FWATWCGPCKMIAPVLEELAADYEGKADILKLDVDE 62
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 86 SGEEFN--SSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVT 134
G +F+ S LGK PA+ +F A WC C+ PV+G+++A HP VT
Sbjct: 28 DGHDFHGESLLGK------PAVLWFWAPWCPTCQGEAPVVGQVAASHPEVT 72
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141
IES F +L D + + F+A WCGP K I P LS K+ +V ++D+D
Sbjct: 5 IESKTAFQEALDAAGDKLV--VVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVD 60
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 98 KDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142
++D L FY A WCGPCK + P + +L +P V K D+D+
Sbjct: 29 QNDKLVIDFY--ATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDE 71
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDI 140
+ ++ S EF+S + + + L + +F A WCGPCK I P E S + + K+D+
Sbjct: 10 VKIVTSQAEFDSIISQ---NELVIVDFF-AEWCGPCKRIAPFYEECSKTYTKMVFIKVDV 65
Query: 141 DQ 142
D+
Sbjct: 66 DE 67
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQ 62
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 86 SGEEFN--SSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVT 134
G +F+ S LGK PA+ +F A WC C+ PV+G+++A HP VT
Sbjct: 14 DGHDFHGESLLGK------PAVLWFWAPWCPTCQGEAPVVGQVAASHPEVT 58
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ ++ +T K++IDQ
Sbjct: 28 FWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 63
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 97 VKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
V + +P + F A WCGP K I PVI EL+ ++ + YK++ D+
Sbjct: 14 VLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDE 60
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDID 141
F A WCGPCK I P +GE+ + VT K++ID
Sbjct: 27 FWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNID 61
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141
IES F +L D + + F+A WCGP K I P LS K+ +V ++D+D
Sbjct: 16 IESKTAFQEALDAAGDKLV--VVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVD 71
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 86 SGEEFNSS---LGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH 130
GE N++ L K+ D LP + F A WCGPC+ P+ E +A+
Sbjct: 37 DGEVINATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAER 84
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQ 62
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141
IES F +L D + + F+A WCGP K I P LS K+ +V ++D+D
Sbjct: 5 IESKTAFQEALDAAGDKLV--VVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVD 60
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAV 157
P I FT +WC PCK + P E++++ + +D + E T+++LNI +
Sbjct: 19 PIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAY-MDAEDAEKTMAELNIRTL 72
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ E++ + +T K++IDQ
Sbjct: 27 FWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQ 62
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 97 VKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
V + S+P + F A WCGPC+ I PV+ E++ ++ + K++ D+
Sbjct: 15 VLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE 61
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKH-PHVTTYKIDIDQ 142
F A WCGPCK I PV+ EL + + KID+D+
Sbjct: 24 FWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDE 59
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I P++ +++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQ 62
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPC+ I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDID 141
P + F A WCGP K + PV+ E++ + +T K+D+D
Sbjct: 29 PVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVD 68
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 14/81 (17%)
Query: 67 FHRTLFSSP-----DGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWP 121
R L S P DGP ++V E+ +E V +++ + F A WCG CK + P
Sbjct: 12 LKRYLKSEPIPESNDGPVKVVVAENFDEI------VNNENKDVLIEFYAPWCGHCKNLEP 65
Query: 122 ---VIGELSAKHPHVTTYKID 139
+GE +K P++ K+D
Sbjct: 66 KYKELGEKLSKDPNIVIAKMD 86
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 73 SSPDGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWP---VIGELSAK 129
S DGP ++V E+ +E V +++ + F A WCG CK + P +GE +K
Sbjct: 348 ESNDGPVKVVVAENFDEI------VNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSK 401
Query: 130 HPHVTTYKID 139
P++ K+D
Sbjct: 402 DPNIVIAKMD 411
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISA 156
A+ FT CGPC I P +S K+P ++D+ Q + T + NISA
Sbjct: 24 AVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ--CQGTAATNNISA 74
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 94 LGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG 144
L ++K+ + F A WCGPC+ + ++ ++ + VT K+D+D+ G
Sbjct: 16 LNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNG 66
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 89 EFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH-PHVTTYKIDID 141
EF S + K + P + YF A+WCGPC+ + P+I + + + K++ID
Sbjct: 16 EFESEVLKAEQ---PVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEID 66
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHV 133
IES F +L D + + F+A WCGPCK I P LS K+ +V
Sbjct: 5 IESKTAFQEALDAAGDKLV--VVDFSATWCGPCKMIKPFFHSLSEKYSNV 52
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKID 139
+++ + S E+F + + + + + +FTA WCGPCK I + +++ + P V K+D
Sbjct: 20 SVVDVYSVEQFRN----IMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVD 75
Query: 140 ID 141
D
Sbjct: 76 AD 77
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCG CK I PV+ EL+A + K+D+D+
Sbjct: 27 FWATWCGTCKMIAPVLEELAADYEGKADILKLDVDE 62
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142
A+ F A WC PC + P+I EL+ +P V K++ D+
Sbjct: 19 AVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDE 57
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCG CK I PV+ EL+A + K+D+D+
Sbjct: 26 FWATWCGSCKMIAPVLEELAADYEGKADILKLDVDE 61
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 83 VIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH 130
VIE +E N +K D P + F A WCGPC+ I P+I EL+ ++
Sbjct: 3 VIEVTDE-NFEQEVLKSDK-PVLVDFWAPWCGPCRMIAPIIEELAKEY 48
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPCK I ++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQ 62
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCG CK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142
F A WC PC + PVI EL+ +P V K++ ++
Sbjct: 30 FWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEE 64
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 92 SSLGKVKDDSL---------PAIFYFTAAWCGPCKFIWPVIGELSAKH-PHVTTYKIDID 141
+L V DDS P + F AAWCGPC+ I P + ++A++ + K++ID
Sbjct: 5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNID 64
Query: 142 Q 142
+
Sbjct: 65 E 65
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGPC+ + P++ EL+ H + K+++D+
Sbjct: 57 FFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDE 92
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGP K I P++ E++ ++ +T K++IDQ
Sbjct: 47 FWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQ 82
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGP K I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A CGPCK I PV+ EL+A + K+D+D+
Sbjct: 26 FWATACGPCKMIAPVLEELAADYEGKADILKLDVDE 61
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTY 136
G +N+L +SGE SLG + ++ YF+A+WC PC+ PV+ E KH +
Sbjct: 10 GATNLLS-KSGE---VSLGSLVGKTV--FLYFSASWCPPCRGFTPVLAEFYEKHHVAKNF 63
Query: 137 KI 138
++
Sbjct: 64 EV 65
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 108 FTAAWCG-PCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCG PCK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQ 63
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141
IES F +L D + + F+A W GP K I P LS K+ +V ++D+D
Sbjct: 5 IESKTAFQEALDAAGDKLV--VVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVD 60
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKH-PHVTTYKIDIDQ 142
F A WCGP K I PV+ EL + + KID+D+
Sbjct: 24 FWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE 59
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 110 AAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQKGLESTLSKLNISAV 157
A WCGPC+ P + EL K+ H + D ++K E+ ++K + +
Sbjct: 39 ATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGI 90
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKH-PHVTTYKIDIDQ 142
F A WCGP K I PV+ EL + + KID+D+
Sbjct: 24 FWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE 59
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKI 138
FYF+A+WC PC+ P + E KH ++I
Sbjct: 52 FFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEI 85
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 86 SGEEFNSSLGKVKDDSLPAIFY-FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
+ + F+ +LG+ P + F A WC PC+ I P++ E++ ++ + K+D+D+
Sbjct: 8 TDQNFDETLGQ-----HPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDE 61
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 86 SGEEFNSSLGKVKDDSLPAIFY-FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
+ + F+ +LG+ P + F A WC PC+ I P++ E++ ++ + K+D+D+
Sbjct: 7 TDQNFDETLGQ-----HPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDE 60
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSK-LNISAV 157
P + WCGPCK + P +L+ ++ V K+D +Q+ TL+K L I V
Sbjct: 39 PVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQEN--KTLAKELGIRVV 92
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSK-LNISAV 157
P + WCGPCK + P +L+ ++ V K+D +Q+ TL+K L I V
Sbjct: 27 PVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQEN--KTLAKELGIRVV 80
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCG K I PV+ EL+A + K+D+D+
Sbjct: 27 FWATWCGTSKMIAPVLEELAADYEGKADILKLDVDE 62
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia
Fasciculata
Length = 146
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 88 EEFNSSLGKVKDDSLPA---IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKI-----D 139
E+ G+V+ SL FYF+A+WC PC+ P + E K +++ D
Sbjct: 12 EKLRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWD 71
Query: 140 IDQKGLESTLSKLNISAV 157
++ G +K+ AV
Sbjct: 72 EEEDGFAGYFAKMPWLAV 89
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
Length = 146
Score = 33.5 bits (75), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 88 EEFNSSLGKVKDDSLPA---IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKI-----D 139
E+ G+V+ SL FYF+A+WC PC+ P + E K +++ D
Sbjct: 12 EKLRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWD 71
Query: 140 IDQKGLESTLSKLNISAV 157
++ G +K+ AV
Sbjct: 72 EEEDGFAGYFAKMPWLAV 89
>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
Length = 154
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 88 EEFNSSLGKVKDDSLPA---IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKI-----D 139
E+ G+V+ SL FYF+A+WC PC+ P + E K +++ D
Sbjct: 12 EKLRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWD 71
Query: 140 IDQKGLESTLSKLNISAV 157
++ G +K+ AV
Sbjct: 72 EEEDGFAGYFAKMPWLAV 89
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 88 EEFNSSLGKVKDDSLPA---IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKI-----D 139
E+ G+V+ SL FYF+A+WC PC+ P + E K +++ D
Sbjct: 11 EKLRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWD 70
Query: 140 IDQKGLESTLSKLNISAV 157
++ G +K+ AV
Sbjct: 71 EEEDGFAGYFAKMPWLAV 88
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 73 SSPDGPSNILVIESGEEFNSSLGKVKDDSLPAIFY-FTAAWCGPCKF---IWPVIGELSA 128
S GP +LV ++ E+ V D +F F A WCG CK IW +GE
Sbjct: 3 SGSSGPVKVLVGKNFED-------VAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYK 55
Query: 129 KHPHVTTYKID 139
H ++ K+D
Sbjct: 56 DHENIVIAKMD 66
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 94 LGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAK-HPHVTTYKID 139
L + + D LP + F A WCGPC+ + P +A V KID
Sbjct: 57 LARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKID 103
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 99 DDSLPAIFYFTAAWCGPCKF---IWPVIGELSAKHPHVTTYKID 139
D+ F A WCG CK IW +GE H ++ K+D
Sbjct: 265 DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMD 308
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 32.7 bits (73), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 76 DGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSA 128
+GP ++V ++ E V DD+ + F A WCG CK + P EL A
Sbjct: 6 EGPVTVVVAKNYNEI------VLDDTKDVLIEFYAPWCGHCKALAPKYEELGA 52
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WC CK I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 95 GKVKDDSLPAI------FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKI 138
G D +LP++ FYF+A+WC PC+ P + + H +++
Sbjct: 19 GAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAESKNFEV 68
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 95 GKVKDDSLPAI------FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKI 138
G D +LP++ FYF+A+WC PC+ P + + H +++
Sbjct: 16 GAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEV 65
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 95 GKVKDDSLPAI------FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKI 138
G D +LP++ FYF+A+WC PC+ P + + H +++
Sbjct: 19 GAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEV 68
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 95 GKVKDDSLPAI------FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKI 138
G D +LP++ FYF+A+WC PC+ P + + H +++
Sbjct: 17 GAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEV 66
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKI--DIDQKGLESTLSKLNIS 155
PA+ +F WC C P + +++A +P VT I D ++S +SK N++
Sbjct: 26 PAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLN 80
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 15/50 (30%)
Query: 108 FTAAWCGP--------------CKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WCGP CK I P++ E++ ++ +T K++IDQ
Sbjct: 28 FWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 77
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQ 142
F A WC K I P++ E++ ++ +T K++IDQ
Sbjct: 27 FWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQ 62
>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin
Related Protein 16 And Its Role In Regulating
Transcription Factor Nf-Kb Activity
Length = 143
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 106 FYFTAAWCGPCKFIWPVIGELSAK 129
FYF+A WC PC+ P++ ++ ++
Sbjct: 31 FYFSAHWCPPCRGFTPILADMYSE 54
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 73 SSPDGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH 130
S GP ++V G+ F++ + K D L F A WCG CK + P+ L K+
Sbjct: 3 SGSSGPVKVVV---GKTFDAIVMDPKKDVL---IEFYAPWCGHCKQLEPIYTSLGKKY 54
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 73 SSPDG--PSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWP----VIGEL 126
S PD P + ++ + E F+ +V +D+ + F A WCG CK + P EL
Sbjct: 121 SQPDWTPPPEVTLVLTKENFD----EVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKEL 176
Query: 127 SAKHPHVTTYKID 139
S + P + K+D
Sbjct: 177 SKRSPPIPLAKVD 189
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 100 DSLPAIFYFTAAWCGPCKFIWP----VIGELSAKHPHVTTYKID 139
D + F A WCG CK P + L K P + KID
Sbjct: 31 DKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKID 74
>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala
Length = 146
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 88 EEFNSSLGKVKDDSLPA---IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKI-----D 139
E+ G+V+ SL FYF+A+WC P + P + E K +++ D
Sbjct: 12 EKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWD 71
Query: 140 IDQKGLESTLSKLNISAV 157
++ G +K+ AV
Sbjct: 72 EEEDGFAGYFAKMPWLAV 89
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSK-LNISAV 157
P + WCGP K + P +L+ ++ V K+D +Q+ TL+K L I V
Sbjct: 26 PVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQEN--KTLAKELGIRVV 79
>pdb|1GD8|A Chain A, The Crystal Structure Of Bacteria-Specific L17 Ribosomal
Protein.
pdb|1GD8|B Chain B, The Crystal Structure Of Bacteria-Specific L17 Ribosomal
Protein.
pdb|1GD8|C Chain C, The Crystal Structure Of Bacteria-Specific L17 Ribosomal
Protein.
pdb|1GD8|D Chain D, The Crystal Structure Of Bacteria-Specific L17 Ribosomal
Protein.
pdb|1GD8|E Chain E, The Crystal Structure Of Bacteria-Specific L17 Ribosomal
Protein.
pdb|1GD8|F Chain F, The Crystal Structure Of Bacteria-Specific L17 Ribosomal
Protein.
pdb|1GD8|G Chain G, The Crystal Structure Of Bacteria-Specific L17 Ribosomal
Protein.
pdb|1GD8|H Chain H, The Crystal Structure Of Bacteria-Specific L17 Ribosomal
Protein.
pdb|1GD8|I Chain I, The Crystal Structure Of Bacteria-Specific L17 Ribosomal
Protein.
pdb|1YL3|0 Chain 0, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4.
pdb|2B66|R Chain R, 50s Ribosomal Subunit From A Crystal Structure Of
Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome. This File Contains The 50s Subunit From A
Crystal Structure Of Release Factor Rf1, Trnas And Mrna
Bound To The Ribosome And Is Described In Remark 400
pdb|2B9N|R Chain R, 50s Ribosomal Subunit From A Crystal Structure Of
Release Factor Rf2, Trnas And Mrna Bound To The
Ribosome. This File Contains The 50s Subunit From A
Crystal Structure Of Release Factor Rf1, Trnas And Mrna
Bound To The Ribosome And Is Described In Remark 400.
pdb|2B9P|R Chain R, 50s Ribosomal Subunit From A Crystal Structure Of The
Ribosome In Complex With Trnas And Mrna With A Stop
Codon In The A-Site. This File Contains The 50s Subunit
From A Crystal Structure Of The Ribosome In Complex
With Trnas And Mrna With A Stop Codon In The A-Site And
Is Described In Remark 400.
pdb|2J01|R Chain R, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of
4). This File Contains The 50s Subunit From Molecule I.
pdb|2J03|R Chain R, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of
4). This File Contains The 50s Subunit From Molecule
Ii.
pdb|2HGJ|Q Chain Q, Crystal Structure Of The 70s Thermus Thermophilus
Ribosome Showing How The 16s 3'-End Mimicks Mrna E And
P Codons. This Entry 2hgj Contains 50s Ribosomal
Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb
Entry 2hgi.
pdb|2HGQ|Q Chain Q, Crystal Structure Of The 70s Thermus Thermophilus
Ribosome With Translocated And Rotated Shine-Dalgarno
Duplex. This Entry 2hgq Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
2hgp.
pdb|2HGU|Q Chain Q, 70s T.Th. Ribosome Functional Complex With Mrna And E-
And P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|1VSA|L Chain L, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|2V47|R Chain R, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe
And Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2V49|R Chain R, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe
And Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2.
pdb|1VSP|L Chain L, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3D5B|R Chain R, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5D|R Chain R, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1F|R Chain R, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|R Chain R, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400.
pdb|2WDI|R Chain R, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|R Chain R, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|R Chain R, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|R Chain R, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|R Chain R, Insights Into Translational Termination From The
Structure Of Rf2 Bound To The Ribosome
pdb|2WH4|R Chain R, Insights Into Translational Termination From The
Structure Of Rf2 Bound To The Ribosome
pdb|3HUX|R Chain R, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|R Chain R, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|R Chain R, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of
4).
pdb|2WRL|R Chain R, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|R Chain R, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|R Chain R, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|R Chain R, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|R Chain R, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|R Chain R, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|R Chain R, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|R Chain R, The Structures Of Viomycin Bound To The 70s Ribosome.
This File Contains The 50s Subunit For Molecule I
pdb|3KNK|R Chain R, The Structures Of Viomycin Bound To The 70s Ribosome.
This File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|R Chain R, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|R Chain R, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|3I8F|0 Chain 0, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8I|0 Chain 0, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9C|0 Chain 0, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule
B. The 30s Subunit Can Be Found In Pdb Entry 3i9b.
Molecule A In The S Asymmetric Unit Is Deposited As
3i9d (30s) And 3i9e (50s)
pdb|3I9E|0 Chain 0, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule
A. The 30s Subunit Can Be Found In Pdb Entry 3i9d.
Molecule B In The S Asymmetric Unit Is Deposited As
3i9b (30s) And 3i9c (50s)
pdb|2X9S|R Chain R, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|R Chain R, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XG0|R Chain R, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|R Chain R, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|3OH5|R Chain R, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OH7|R Chain R, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OHJ|R Chain R, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHK|R Chain R, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHZ|R Chain R, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI1|R Chain R, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI3|R Chain R, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI5|R Chain R, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQE|R Chain R, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The
70s Ribosome With A Gtp Analog
pdb|2XTG|R Chain R, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|R Chain R, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|R Chain R, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|R Chain R, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|R Chain R, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|R Chain R, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y13|R Chain R, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|R Chain R, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Cognate Codon On The 70s Ribosome.
pdb|2Y17|R Chain R, Ef-Tu Complex 3
pdb|2Y19|R Chain R, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|3ZVP|R Chain R, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release
Factor 3
pdb|3UXQ|R Chain R, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXR|R Chain R, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3TVE|0 Chain 0, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3UYE|0 Chain 0, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex
pdb|3UYG|0 Chain 0, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex
pdb|3UZ1|0 Chain 0, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex With Paromomycin
pdb|3UZ2|0 Chain 0, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex With Paromomycin.
pdb|3UZ8|0 Chain 0, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZ9|0 Chain 0, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZF|0 Chain 0, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex
pdb|3UZH|0 Chain 0, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex.
pdb|3UZK|0 Chain 0, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex With Paromomycin
pdb|3UZN|0 Chain 0, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-cognate Trna-tyr Complex With Paromomycin
pdb|4ABS|R Chain R, Complex Of Smpb, A Tmrna Fragment And
Ef-Tu-Gdp-Kirromycin With The 70s Ribosome
pdb|4DHA|R Chain R, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHC|R Chain R, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V23|R Chain R, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V25|R Chain R, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|3V27|R Chain R, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V29|R Chain R, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Entry Contains The 50s Subunit Of The 2nd Molecule In
The Asu.
pdb|3V2D|R Chain R, Crystal Structure Of Yfia Bound To The 70s Ribosome.
This Pdb Entry Contains Coordinates For The 50s Subunit
Of The 1st Ribosome In The Asu
pdb|3V2F|R Chain R, Crystal Structure Of Yfia Bound To The 70s Ribosome.
This Pdb Entry Contains Coordinates For The 50s Subunit
Of The 2nd Ribosome In The Asu
pdb|4G5L|0 Chain 0, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5N|0 Chain 0, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule B.
pdb|4G5U|0 Chain 0, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5W|0 Chain 0, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule B
Length = 118
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 25 NIAKSLISHSTNNTTVPKIPSFRNYI 50
N AKSL++H TTVPK R ++
Sbjct: 23 NQAKSLLTHGRITTTVPKAKELRGFV 48
>pdb|3FIN|R Chain R, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit.
pdb|3MRZ|N Chain N, Recognition Of The Amber Stop Codon By Release Factor
Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
3ms0. Molecule A In The Same Asymmetric Unit Is
Deposited As 3mr8 (50s) And 3ms1 (30s).
pdb|3MS1|N Chain N, Recognition Of The Amber Stop Codon By Release Factor
Rf1. This Entry 3ms1 Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
3mr8. Molecule B In The Same Asymmetric Unit Is
Deposited As 3mrz (50s) And 3ms0 (30s).
pdb|3PYO|N Chain N, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The First 70s
Ribosome.
pdb|3PYR|N Chain N, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The Second 70s
Ribosome.
pdb|3PYT|N Chain N, Crystal Structure Of A Complex Containing Domain 3 Of
Crpv Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYV|N Chain N, Crystal Structure Of A Complex Containing Domain 3 Of
Crpv Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The Second 70s Ribosome.
pdb|3TVH|0 Chain 0, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
Length = 117
Score = 29.6 bits (65), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 25 NIAKSLISHSTNNTTVPKIPSFRNYI 50
N AKSL++H TTVPK R ++
Sbjct: 22 NQAKSLLTHGRITTTVPKAKELRGFV 47
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKH-PHVTTYKI-DIDQKGLESTLSKLNISA 156
F A WCG CK + P ELS K P + KI ++D + SK ++
Sbjct: 30 FYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRG 80
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKH-PHVTTYKI-DIDQKGLESTLSKLNISA 156
F A WCG CK + P ELS K P + KI ++D + SK ++
Sbjct: 28 FYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRG 78
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 108 FTAAWCGPCKFIWPVIGELSAKH-PHVTTYKI-DIDQKGLESTLSKLNISA 156
F A WCG CK + P ELS K P + KI ++D + SK ++
Sbjct: 23 FYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRG 73
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 100 DSLPAIFY--FTAAWCGPCKFIWPVIGELSAKH 130
D ++ Y F A+WCGPC+ +P + AK+
Sbjct: 25 DKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKY 57
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 108 FTAAWCGPCKFIWP----VIGELSAKHPHVTTYKIDIDQK 143
F A WCG CK + P ELS + P + K+D ++
Sbjct: 31 FYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQ 70
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 97 VKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTT 135
V D + + A WCG CK + P EL+ + + T+
Sbjct: 372 VNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATS 410
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 110 AAWCGPCKFIWPVIGELSAK--HPHVTTYKIDIDQKGLE 146
A WC PC+ P + EL K P+ I+ID + E
Sbjct: 69 ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPE 107
>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine
Length = 144
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 95 GKVKDDSLPAI------FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKI 138
G D +LP++ FYF+A+WC P + P + + H +++
Sbjct: 16 GAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEV 65
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 108 FTAAWCGPCKFIWP----VIGELSAKHPHVTTYKIDIDQKGLESTLSK 151
F A WCG CK + P G+L A+ + K+D + ES L++
Sbjct: 31 FYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE---ESDLAQ 75
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAK--HPHVTTYKI 138
++ I E+F D L + YF +W PCK + V +S + + +V+ I
Sbjct: 2 VIEINDQEQFTYLTTTAAGDKL-IVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSI 60
Query: 139 DIDQKGLESTLSKLNISAV 157
D D+ S L ISAV
Sbjct: 61 DADENSEISEL--FEISAV 77
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 94 LGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLN 153
L ++K SL + +F A W C + V+ EL+ + P V+ K++ + G+ K
Sbjct: 26 LLRLKAKSL-LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAE--GVPEVSEKYE 82
Query: 154 ISAV 157
IS+V
Sbjct: 83 ISSV 86
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 94 LGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLN 153
L ++K SL + +F A W C + V+ EL+ + P V+ K++ + G+ K
Sbjct: 32 LLRLKAKSL-LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAE--GVPEVSEKYE 88
Query: 154 ISAV 157
IS+V
Sbjct: 89 ISSV 92
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 113 CGPCKFIWPVIGELSAKHPHVT 134
GP K + P+I E+ KHP +T
Sbjct: 134 IGPAKNVLPLIDEIHKKHPELT 155
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 113 CGPCKFIWPVIGELSAKHPHVT 134
GP K + P+I E+ KHP +T
Sbjct: 135 IGPAKNVLPLIDEIHKKHPELT 156
>pdb|3LNS|A Chain A, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+ And Benzoate Adduct
pdb|3LNS|B Chain B, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+ And Benzoate Adduct
pdb|3LNS|C Chain C, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+ And Benzoate Adduct
pdb|3LNS|D Chain D, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+ And Benzoate Adduct
Length = 457
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 13/74 (17%)
Query: 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYF--------TAAWCGPCKFIWPVIGELSA 128
P + VI+ G + NS L SLP F F K + PV+ EL
Sbjct: 185 APEYVAVIQGGRDENSHLL-----SLPFDFIFFTGSPNVGKVVMQAAAKHLTPVVLELGG 239
Query: 129 KHPHVTTYKIDIDQ 142
K P + D+DQ
Sbjct: 240 KCPLIVLPDADLDQ 253
>pdb|3LV1|A Chain A, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+
pdb|3LV1|B Chain B, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+
pdb|3LV1|C Chain C, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+
pdb|3LV1|D Chain D, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+
Length = 457
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 13/74 (17%)
Query: 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYF--------TAAWCGPCKFIWPVIGELSA 128
P + VI+ G + NS L SLP F F K + PV+ EL
Sbjct: 185 APEYVAVIQGGRDENSHLL-----SLPFDFIFFTGSPNVGKVVMQAAAKHLTPVVLELGG 239
Query: 129 KHPHVTTYKIDIDQ 142
K P + D+DQ
Sbjct: 240 KCPLIVLPDADLDQ 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,205,866
Number of Sequences: 62578
Number of extensions: 150735
Number of successful extensions: 418
Number of sequences better than 100.0: 154
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 276
Number of HSP's gapped (non-prelim): 157
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)