Query 031078
Match_columns 166
No_of_seqs 209 out of 1733
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:54:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0907 Thioredoxin [Posttrans 99.9 2.4E-21 5.2E-26 137.9 9.0 81 83-165 3-83 (106)
2 KOG0910 Thioredoxin-like prote 99.9 3.5E-21 7.5E-26 143.3 9.8 82 79-165 42-124 (150)
3 cd02954 DIM1 Dim1 family; Dim1 99.8 1.4E-20 3.1E-25 135.3 10.1 74 87-164 2-76 (114)
4 cd02985 TRX_CDSP32 TRX family, 99.8 2.6E-19 5.7E-24 126.1 10.4 77 86-164 2-79 (103)
5 PHA02278 thioredoxin-like prot 99.8 2.7E-19 5.9E-24 126.6 10.0 77 85-165 2-81 (103)
6 cd02986 DLP Dim1 family, Dim1- 99.8 2.5E-19 5.5E-24 128.4 9.7 74 87-164 2-76 (114)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.8 5.2E-19 1.1E-23 127.2 10.4 84 77-164 7-92 (113)
8 cd02989 Phd_like_TxnDC9 Phosdu 99.8 7.7E-19 1.7E-23 126.0 11.2 82 78-165 3-84 (113)
9 cd02948 TRX_NDPK TRX domain, T 99.8 2.1E-18 4.5E-23 121.2 10.2 77 82-165 2-80 (102)
10 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 2.2E-18 4.9E-23 120.6 10.3 79 81-165 3-82 (104)
11 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 2.3E-18 4.9E-23 120.2 10.2 77 81-164 3-80 (101)
12 PLN00410 U5 snRNP protein, DIM 99.8 1.2E-18 2.7E-23 129.7 9.3 80 81-164 5-86 (142)
13 cd02999 PDI_a_ERp44_like PDIa 99.8 2.2E-18 4.8E-23 121.0 9.5 74 88-165 7-81 (100)
14 cd02957 Phd_like Phosducin (Ph 99.8 4.1E-18 8.9E-23 121.8 9.8 83 78-165 3-85 (113)
15 cd02956 ybbN ybbN protein fami 99.8 6.3E-18 1.4E-22 116.6 9.2 73 88-164 1-74 (96)
16 PF00085 Thioredoxin: Thioredo 99.7 1E-17 2.2E-22 115.8 9.8 78 83-165 2-80 (103)
17 PTZ00051 thioredoxin; Provisio 99.7 1.5E-17 3.3E-22 114.9 10.6 78 81-164 2-79 (98)
18 KOG0908 Thioredoxin-like prote 99.7 4.3E-18 9.4E-23 135.6 7.5 81 80-164 2-82 (288)
19 cd03002 PDI_a_MPD1_like PDI fa 99.7 1.8E-17 3.9E-22 116.5 9.9 78 85-165 5-83 (109)
20 cd02996 PDI_a_ERp44 PDIa famil 99.7 3E-17 6.6E-22 115.9 10.2 78 80-164 2-86 (108)
21 cd02963 TRX_DnaJ TRX domain, D 99.7 2.1E-17 4.6E-22 117.9 8.7 76 86-164 10-87 (111)
22 cd03065 PDI_b_Calsequestrin_N 99.7 2.1E-17 4.5E-22 120.0 8.7 82 77-164 7-95 (120)
23 cd02987 Phd_like_Phd Phosducin 99.7 3.8E-17 8.2E-22 125.8 10.4 85 77-165 60-144 (175)
24 cd02965 HyaE HyaE family; HyaE 99.7 4.4E-17 9.6E-22 116.6 8.5 73 86-164 16-91 (111)
25 cd02984 TRX_PICOT TRX domain, 99.7 8.2E-17 1.8E-21 110.9 9.6 76 86-165 1-77 (97)
26 cd02962 TMX2 TMX2 family; comp 99.7 1.5E-16 3.3E-21 119.9 11.4 83 78-165 27-117 (152)
27 cd03001 PDI_a_P5 PDIa family, 99.7 1.8E-16 4E-21 110.1 10.5 75 85-164 5-80 (103)
28 cd02950 TxlA TRX-like protein 99.7 7.2E-17 1.6E-21 120.2 8.8 73 88-164 11-84 (142)
29 PRK09381 trxA thioredoxin; Pro 99.7 1.7E-16 3.7E-21 112.1 10.0 79 80-164 4-83 (109)
30 PRK10996 thioredoxin 2; Provis 99.7 3.4E-16 7.3E-21 116.1 12.0 83 75-164 31-114 (139)
31 cd02994 PDI_a_TMX PDIa family, 99.7 2.2E-16 4.7E-21 110.0 10.2 76 80-164 2-79 (101)
32 COG3118 Thioredoxin domain-con 99.7 1.2E-16 2.6E-21 130.5 9.7 80 81-164 25-105 (304)
33 cd02992 PDI_a_QSOX PDIa family 99.7 2.4E-16 5.2E-21 113.1 9.9 78 85-165 6-87 (114)
34 cd02993 PDI_a_APS_reductase PD 99.7 4.1E-16 8.9E-21 110.6 10.0 78 85-164 6-86 (109)
35 cd03005 PDI_a_ERp46 PDIa famil 99.7 3.8E-16 8.2E-21 108.3 9.5 72 86-164 6-81 (102)
36 PTZ00443 Thioredoxin domain-co 99.7 6E-16 1.3E-20 123.4 10.5 84 78-164 29-114 (224)
37 cd02952 TRP14_like Human TRX-r 99.7 5.9E-16 1.3E-20 112.2 9.5 81 83-165 5-99 (119)
38 TIGR01068 thioredoxin thioredo 99.7 1.1E-15 2.3E-20 105.1 9.6 74 86-164 2-76 (101)
39 cd02975 PfPDO_like_N Pyrococcu 99.7 7.6E-16 1.7E-20 110.4 9.1 64 99-164 20-83 (113)
40 cd03000 PDI_a_TMX3 PDIa family 99.6 4.8E-16 1E-20 109.2 7.7 72 87-165 6-81 (104)
41 cd02997 PDI_a_PDIR PDIa family 99.6 1.4E-15 3.1E-20 105.6 10.0 79 82-165 3-84 (104)
42 cd02953 DsbDgamma DsbD gamma f 99.6 7.1E-16 1.5E-20 108.1 8.3 73 88-164 2-80 (104)
43 TIGR01126 pdi_dom protein disu 99.6 1.3E-15 2.9E-20 105.1 9.1 73 86-164 2-77 (102)
44 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 1.6E-15 3.5E-20 105.2 9.4 75 84-164 4-81 (104)
45 cd02998 PDI_a_ERp38 PDIa famil 99.6 2E-15 4.4E-20 104.7 9.3 74 86-164 6-83 (105)
46 cd02961 PDI_a_family Protein D 99.6 4.6E-15 1E-19 101.1 9.8 74 86-165 4-80 (101)
47 cd02949 TRX_NTR TRX domain, no 99.6 4.2E-15 9.1E-20 103.2 9.5 70 90-164 5-75 (97)
48 cd02988 Phd_like_VIAF Phosduci 99.6 4.2E-15 9.1E-20 116.0 9.4 82 77-165 80-161 (192)
49 TIGR00424 APS_reduc 5'-adenyly 99.6 8.3E-15 1.8E-19 127.4 10.9 83 81-164 352-436 (463)
50 cd02951 SoxW SoxW family; SoxW 99.6 6.7E-15 1.5E-19 106.4 7.9 69 97-165 9-93 (125)
51 cd02959 ERp19 Endoplasmic reti 99.6 6.3E-15 1.4E-19 106.4 7.2 75 89-164 7-84 (117)
52 PLN02309 5'-adenylylsulfate re 99.6 2.6E-14 5.7E-19 124.2 10.8 81 81-164 346-430 (457)
53 PRK00293 dipZ thiol:disulfide 99.5 2.9E-14 6.3E-19 127.3 10.9 87 78-164 451-542 (571)
54 TIGR01295 PedC_BrcD bacterioci 99.5 4.8E-14 1E-18 102.5 9.8 76 85-165 11-99 (122)
55 cd02947 TRX_family TRX family; 99.5 4.4E-14 9.5E-19 94.4 8.7 70 89-164 2-71 (93)
56 cd02973 TRX_GRX_like Thioredox 99.5 1.3E-13 2.8E-18 89.3 7.4 59 104-164 2-60 (67)
57 PTZ00102 disulphide isomerase; 99.5 1E-13 2.2E-18 120.1 8.9 79 81-164 358-439 (477)
58 TIGR00411 redox_disulf_1 small 99.5 1.4E-13 3.1E-18 91.9 7.6 57 104-162 2-59 (82)
59 KOG0190 Protein disulfide isom 99.5 5.2E-14 1.1E-18 122.5 6.9 80 79-164 24-107 (493)
60 PTZ00062 glutaredoxin; Provisi 99.5 1.5E-13 3.2E-18 108.2 8.4 67 85-164 4-70 (204)
61 KOG0190 Protein disulfide isom 99.5 1.2E-13 2.6E-18 120.2 7.4 78 80-164 366-446 (493)
62 TIGR01130 ER_PDI_fam protein d 99.5 3.5E-13 7.7E-18 115.6 9.9 75 84-164 5-83 (462)
63 PTZ00102 disulphide isomerase; 99.4 5.3E-13 1.1E-17 115.7 10.0 78 82-165 34-115 (477)
64 cd02982 PDI_b'_family Protein 99.4 5.3E-13 1.1E-17 92.7 7.3 63 101-165 12-77 (103)
65 PHA02125 thioredoxin-like prot 99.4 5.4E-13 1.2E-17 88.8 6.8 51 105-162 2-52 (75)
66 cd02955 SSP411 TRX domain, SSP 99.4 8.5E-13 1.9E-17 96.3 7.9 69 94-164 8-88 (124)
67 PF13905 Thioredoxin_8: Thiore 99.4 1E-12 2.2E-17 90.2 7.7 64 101-164 1-90 (95)
68 KOG4277 Uncharacterized conser 99.4 2.9E-13 6.2E-18 111.2 4.8 75 88-165 31-109 (468)
69 cd03008 TryX_like_RdCVF Trypar 99.4 1.6E-12 3.4E-17 97.5 8.1 66 100-165 24-121 (146)
70 cd03007 PDI_a_ERp29_N PDIa fam 99.4 2.4E-12 5.1E-17 92.9 8.2 74 84-164 5-88 (116)
71 TIGR00412 redox_disulf_2 small 99.4 2.1E-12 4.6E-17 86.3 7.1 54 105-164 2-56 (76)
72 cd03009 TryX_like_TryX_NRX Try 99.4 2.7E-12 5.8E-17 93.3 7.8 65 100-164 17-107 (131)
73 TIGR02187 GlrX_arch Glutaredox 99.4 3E-12 6.6E-17 101.1 8.7 61 103-165 135-195 (215)
74 cd02964 TryX_like_family Trypa 99.3 4.7E-12 1E-16 92.5 8.0 65 100-164 16-107 (132)
75 PF13899 Thioredoxin_7: Thiore 99.3 1.6E-12 3.5E-17 87.7 4.9 74 88-164 4-81 (82)
76 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 7.3E-12 1.6E-16 86.3 8.3 60 101-162 12-71 (89)
77 TIGR02187 GlrX_arch Glutaredox 99.3 8.2E-12 1.8E-16 98.7 9.2 64 102-165 20-86 (215)
78 TIGR02738 TrbB type-F conjugat 99.3 3.9E-12 8.5E-17 96.0 6.8 63 101-164 50-126 (153)
79 TIGR01130 ER_PDI_fam protein d 99.3 5.6E-12 1.2E-16 108.2 8.2 76 82-164 348-427 (462)
80 TIGR02740 TraF-like TraF-like 99.3 1.1E-11 2.3E-16 101.5 9.3 64 100-164 165-237 (271)
81 cd03010 TlpA_like_DsbE TlpA-li 99.3 1.7E-11 3.6E-16 88.5 8.0 64 100-164 24-108 (127)
82 PF13098 Thioredoxin_2: Thiore 99.3 7.8E-12 1.7E-16 88.2 5.1 67 98-164 2-90 (112)
83 cd02958 UAS UAS family; UAS is 99.2 2.3E-11 4.9E-16 86.8 7.2 77 88-164 4-84 (114)
84 cd02960 AGR Anterior Gradient 99.2 2.3E-11 5E-16 89.4 6.5 79 83-164 5-87 (130)
85 PRK15412 thiol:disulfide inter 99.2 4.7E-11 1E-15 92.3 8.5 63 100-164 67-150 (185)
86 PRK14018 trifunctional thiored 99.2 3.5E-11 7.5E-16 106.2 8.4 63 100-164 55-147 (521)
87 cd02967 mauD Methylamine utili 99.2 3.9E-11 8.4E-16 84.7 5.7 65 100-164 20-103 (114)
88 KOG0191 Thioredoxin/protein di 99.2 4.8E-11 1E-15 101.8 7.2 64 100-165 46-110 (383)
89 smart00594 UAS UAS domain. 99.2 1E-10 2.3E-15 84.7 7.9 78 87-164 13-94 (122)
90 cd02966 TlpA_like_family TlpA- 99.2 1.2E-10 2.5E-15 80.5 7.8 65 100-164 18-105 (116)
91 cd03012 TlpA_like_DipZ_like Tl 99.1 2.4E-10 5.2E-15 82.7 8.1 65 100-164 22-113 (126)
92 KOG1731 FAD-dependent sulfhydr 99.1 2.3E-11 5.1E-16 106.6 2.9 81 80-163 39-123 (606)
93 TIGR00385 dsbE periplasmic pro 99.1 2.8E-10 6.1E-15 86.9 7.6 63 100-164 62-145 (173)
94 cd03011 TlpA_like_ScsD_MtbDsbE 99.1 3.1E-10 6.8E-15 81.1 7.3 62 100-164 19-101 (123)
95 COG4232 Thiol:disulfide interc 99.1 3.3E-10 7.2E-15 100.0 8.8 82 82-165 457-543 (569)
96 PRK03147 thiol-disulfide oxido 99.1 4.3E-10 9.4E-15 84.9 7.8 65 100-164 60-146 (173)
97 KOG0912 Thiol-disulfide isomer 99.1 3.6E-10 7.7E-15 92.9 6.6 71 87-163 3-79 (375)
98 PLN02919 haloacid dehalogenase 99.1 4.4E-10 9.6E-15 106.6 8.3 65 100-164 419-510 (1057)
99 PRK13728 conjugal transfer pro 99.1 6.6E-10 1.4E-14 85.9 7.8 60 105-165 73-145 (181)
100 PF08534 Redoxin: Redoxin; In 99.0 8.9E-10 1.9E-14 81.2 6.4 65 100-164 27-122 (146)
101 TIGR02661 MauD methylamine deh 99.0 2.7E-09 5.9E-14 82.8 8.0 64 100-164 73-154 (189)
102 COG0526 TrxA Thiol-disulfide i 99.0 2.8E-09 6E-14 72.6 7.1 62 101-164 32-97 (127)
103 PF06110 DUF953: Eukaryotic pr 98.9 7.4E-09 1.6E-13 75.0 8.3 83 84-166 2-99 (119)
104 KOG0914 Thioredoxin-like prote 98.9 2.4E-09 5.3E-14 84.4 5.5 85 77-165 122-214 (265)
105 cd01659 TRX_superfamily Thiore 98.9 1.1E-08 2.3E-13 62.4 7.0 58 105-164 1-61 (69)
106 KOG0191 Thioredoxin/protein di 98.9 5.7E-09 1.2E-13 89.0 7.4 78 81-164 146-226 (383)
107 TIGR02200 GlrX_actino Glutared 98.8 1.5E-08 3.2E-13 66.4 6.5 53 105-164 2-59 (77)
108 TIGR02196 GlrX_YruB Glutaredox 98.8 2.1E-08 4.6E-13 64.6 7.0 55 105-164 2-58 (74)
109 cd02969 PRX_like1 Peroxiredoxi 98.8 2.4E-08 5.2E-13 75.7 7.7 65 100-164 24-117 (171)
110 PTZ00056 glutathione peroxidas 98.8 1.5E-08 3.3E-13 79.4 6.4 60 100-160 38-108 (199)
111 KOG3425 Uncharacterized conser 98.8 3.1E-08 6.7E-13 71.3 7.4 81 83-164 8-103 (128)
112 cd00340 GSH_Peroxidase Glutath 98.8 2.6E-08 5.6E-13 74.4 7.0 60 100-161 21-92 (152)
113 PF02114 Phosducin: Phosducin; 98.7 2.4E-08 5.3E-13 81.6 6.8 85 77-165 123-207 (265)
114 TIGR01626 ytfJ_HI0045 conserve 98.7 2.8E-08 6.1E-13 77.1 5.9 63 100-164 58-154 (184)
115 PF00578 AhpC-TSA: AhpC/TSA fa 98.7 5.4E-08 1.2E-12 69.2 6.6 65 100-164 24-116 (124)
116 PF14595 Thioredoxin_9: Thiore 98.7 4.8E-08 1.1E-12 71.7 6.3 64 100-165 40-106 (129)
117 KOG2501 Thioredoxin, nucleored 98.6 4.5E-08 9.7E-13 73.8 5.3 65 100-164 32-123 (157)
118 TIGR02180 GRX_euk Glutaredoxin 98.6 8.9E-08 1.9E-12 63.8 6.1 58 105-163 1-61 (84)
119 PLN02399 phospholipid hydroper 98.6 6.6E-08 1.4E-12 77.8 6.1 42 100-141 98-141 (236)
120 PF13728 TraF: F plasmid trans 98.6 2.5E-07 5.5E-12 73.4 9.3 76 88-166 109-193 (215)
121 KOG1672 ATP binding protein [P 98.6 1.1E-07 2.5E-12 73.7 6.7 84 75-164 62-145 (211)
122 PLN02412 probable glutathione 98.6 1.7E-07 3.8E-12 71.3 6.8 61 100-161 28-100 (167)
123 PRK11509 hydrogenase-1 operon 98.6 3.5E-07 7.6E-12 67.4 8.0 72 88-165 25-100 (132)
124 TIGR02540 gpx7 putative glutat 98.6 1.1E-07 2.5E-12 70.9 5.5 61 100-161 21-93 (153)
125 PF03190 Thioredox_DsbH: Prote 98.6 1.2E-07 2.5E-12 72.3 5.2 71 92-164 28-110 (163)
126 cd03014 PRX_Atyp2cys Peroxired 98.5 2.9E-07 6.2E-12 67.6 7.2 43 100-142 25-68 (143)
127 cd02991 UAS_ETEA UAS family, E 98.5 4E-07 8.7E-12 65.6 7.6 74 88-163 4-83 (116)
128 cd02970 PRX_like2 Peroxiredoxi 98.5 4.2E-07 9E-12 66.5 7.9 42 102-143 25-68 (149)
129 PRK11200 grxA glutaredoxin 1; 98.5 4.7E-07 1E-11 61.2 7.1 59 104-162 2-64 (85)
130 PRK00522 tpx lipid hydroperoxi 98.5 4.4E-07 9.5E-12 69.0 7.2 56 100-155 43-100 (167)
131 cd03017 PRX_BCP Peroxiredoxin 98.4 8E-07 1.7E-11 64.6 6.5 65 100-164 22-117 (140)
132 PTZ00256 glutathione peroxidas 98.4 6.5E-07 1.4E-11 69.0 6.0 42 100-141 39-83 (183)
133 PRK10606 btuE putative glutath 98.4 1E-06 2.2E-11 68.4 6.2 59 100-160 24-94 (183)
134 TIGR02183 GRXA Glutaredoxin, G 98.4 1.5E-06 3.3E-11 59.1 6.3 59 105-163 2-64 (86)
135 cd02976 NrdH NrdH-redoxin (Nrd 98.3 2.2E-06 4.7E-11 54.9 6.7 53 105-164 2-58 (73)
136 TIGR03137 AhpC peroxiredoxin. 98.3 1.4E-06 3.1E-11 67.4 6.6 65 100-164 30-126 (187)
137 TIGR02739 TraF type-F conjugat 98.3 3.1E-06 6.8E-11 68.9 8.5 72 91-165 142-222 (256)
138 cd03015 PRX_Typ2cys Peroxiredo 98.3 1.9E-06 4.2E-11 65.6 6.4 43 100-142 28-73 (173)
139 KOG0911 Glutaredoxin-related p 98.3 6.2E-07 1.3E-11 71.0 3.3 76 80-163 2-77 (227)
140 cd02968 SCO SCO (an acronym fo 98.2 2.5E-06 5.4E-11 62.1 5.7 43 100-142 21-69 (142)
141 cd02971 PRX_family Peroxiredox 98.2 4.4E-06 9.6E-11 60.6 6.7 43 100-142 21-66 (140)
142 cd03419 GRX_GRXh_1_2_like Glut 98.2 5.4E-06 1.2E-10 54.9 6.4 55 105-162 2-59 (82)
143 PF13192 Thioredoxin_3: Thiore 98.2 9E-06 1.9E-10 54.0 7.4 52 107-162 4-55 (76)
144 PRK13703 conjugal pilus assemb 98.2 8.7E-06 1.9E-10 66.0 8.4 72 91-165 135-215 (248)
145 KOG3414 Component of the U4/U6 98.2 1.1E-05 2.5E-10 58.6 7.6 77 83-163 7-84 (142)
146 PRK09437 bcp thioredoxin-depen 98.2 5.7E-06 1.2E-10 61.5 6.4 44 100-143 29-75 (154)
147 cd03018 PRX_AhpE_like Peroxire 98.1 6E-06 1.3E-10 60.6 5.4 41 102-142 29-72 (149)
148 PRK10382 alkyl hydroperoxide r 98.1 1.4E-05 3E-10 62.2 7.2 65 100-164 30-126 (187)
149 PF00462 Glutaredoxin: Glutare 98.1 1.8E-05 3.8E-10 49.8 6.4 54 105-163 1-56 (60)
150 COG2143 Thioredoxin-related pr 98.1 2.7E-05 6E-10 58.8 8.3 70 96-165 37-124 (182)
151 cd02066 GRX_family Glutaredoxi 98.0 2E-05 4.2E-10 50.1 6.2 53 105-162 2-56 (72)
152 PHA03050 glutaredoxin; Provisi 98.0 1.6E-05 3.6E-10 56.5 6.2 58 105-164 15-77 (108)
153 PF02966 DIM1: Mitosis protein 98.0 6.8E-05 1.5E-09 55.0 9.0 75 82-161 3-78 (133)
154 TIGR02190 GlrX-dom Glutaredoxi 98.0 2.9E-05 6.3E-10 51.7 6.7 58 101-163 6-64 (79)
155 PRK15317 alkyl hydroperoxide r 98.0 2.7E-05 5.8E-10 69.0 8.3 61 102-164 117-177 (517)
156 TIGR03143 AhpF_homolog putativ 98.0 2.9E-05 6.2E-10 69.5 8.5 61 102-164 476-537 (555)
157 PRK15000 peroxidase; Provision 98.0 2.3E-05 5E-10 61.5 6.5 43 100-142 33-78 (200)
158 KOG0913 Thiol-disulfide isomer 97.9 1.5E-06 3.2E-11 69.3 -0.7 75 81-163 25-101 (248)
159 TIGR02194 GlrX_NrdH Glutaredox 97.9 4.4E-05 9.5E-10 49.9 6.2 53 105-162 1-54 (72)
160 PRK13190 putative peroxiredoxi 97.9 3.4E-05 7.5E-10 60.5 6.5 42 101-142 27-71 (202)
161 PRK10329 glutaredoxin-like pro 97.9 9E-05 2E-09 49.9 7.3 55 105-164 3-58 (81)
162 PTZ00137 2-Cys peroxiredoxin; 97.8 7.8E-05 1.7E-09 60.9 7.1 43 100-142 97-142 (261)
163 cd02972 DsbA_family DsbA famil 97.8 0.00014 3.1E-09 48.4 7.3 60 105-164 1-91 (98)
164 cd03418 GRX_GRXb_1_3_like Glut 97.7 0.00017 3.7E-09 46.9 6.8 54 105-163 2-58 (75)
165 cd03029 GRX_hybridPRX5 Glutare 97.7 0.00017 3.7E-09 46.9 6.6 54 105-163 3-57 (72)
166 cd03027 GRX_DEP Glutaredoxin ( 97.7 0.0002 4.4E-09 46.7 6.9 55 105-164 3-59 (73)
167 PF11009 DUF2847: Protein of u 97.7 0.00026 5.7E-09 50.2 7.7 81 82-164 2-86 (105)
168 TIGR03140 AhpF alkyl hydropero 97.7 0.00016 3.5E-09 64.1 8.2 61 102-164 118-178 (515)
169 TIGR02181 GRX_bact Glutaredoxi 97.7 6.3E-05 1.4E-09 49.7 4.3 54 105-163 1-56 (79)
170 cd03016 PRX_1cys Peroxiredoxin 97.7 0.00012 2.6E-09 57.3 6.6 40 103-142 28-69 (203)
171 PRK10877 protein disulfide iso 97.7 0.00024 5.3E-09 57.0 8.4 65 99-165 105-211 (232)
172 PRK13599 putative peroxiredoxi 97.7 9.3E-05 2E-09 58.7 5.8 42 101-142 28-72 (215)
173 TIGR02189 GlrX-like_plant Glut 97.7 0.00013 2.7E-09 51.1 5.8 54 105-163 10-68 (99)
174 KOG3171 Conserved phosducin-li 97.7 0.00021 4.6E-09 56.6 7.4 86 76-165 135-220 (273)
175 PRK13191 putative peroxiredoxi 97.6 0.00016 3.4E-09 57.4 6.4 43 101-143 33-78 (215)
176 cd03020 DsbA_DsbC_DsbG DsbA fa 97.6 0.00011 2.4E-09 57.1 5.0 27 99-125 75-101 (197)
177 PRK13189 peroxiredoxin; Provis 97.6 0.00017 3.7E-09 57.5 6.1 42 101-142 35-79 (222)
178 cd03023 DsbA_Com1_like DsbA fa 97.6 0.00021 4.4E-09 52.1 6.0 42 99-140 3-44 (154)
179 PF13848 Thioredoxin_6: Thiore 97.5 0.00091 2E-08 50.3 9.0 77 81-164 79-159 (184)
180 PTZ00253 tryparedoxin peroxida 97.5 0.00037 8.1E-09 54.3 6.9 44 100-143 35-81 (199)
181 TIGR00365 monothiol glutaredox 97.5 0.0009 2E-08 46.5 7.9 58 102-164 12-75 (97)
182 PF05768 DUF836: Glutaredoxin- 97.4 0.00069 1.5E-08 45.4 6.6 57 104-164 1-57 (81)
183 PRK10638 glutaredoxin 3; Provi 97.4 0.00069 1.5E-08 45.4 6.3 53 105-162 4-58 (83)
184 COG0695 GrxC Glutaredoxin and 97.3 0.0009 2E-08 44.9 6.2 55 105-164 3-61 (80)
185 PRK11657 dsbG disulfide isomer 97.3 0.00086 1.9E-08 54.4 6.9 65 99-164 115-227 (251)
186 cd03028 GRX_PICOT_like Glutare 97.1 0.00088 1.9E-08 45.7 4.7 57 102-163 8-70 (90)
187 PRK10824 glutaredoxin-4; Provi 96.9 0.0026 5.6E-08 45.8 5.7 57 102-163 15-77 (115)
188 PF07449 HyaE: Hydrogenase-1 e 96.8 0.002 4.4E-08 45.8 4.3 77 81-164 11-90 (107)
189 PTZ00062 glutaredoxin; Provisi 96.8 0.008 1.7E-07 47.5 7.9 70 89-164 101-176 (204)
190 KOG3170 Conserved phosducin-li 96.7 0.0096 2.1E-07 46.9 7.9 81 77-164 89-169 (240)
191 TIGR03143 AhpF_homolog putativ 96.7 0.0084 1.8E-07 53.7 8.7 79 82-164 349-427 (555)
192 cd02983 P5_C P5 family, C-term 96.7 0.024 5.2E-07 41.4 9.5 80 79-164 2-89 (130)
193 PRK12759 bifunctional gluaredo 96.7 0.0049 1.1E-07 53.4 6.6 55 105-164 4-68 (410)
194 KOG1752 Glutaredoxin and relat 96.5 0.013 2.9E-07 41.4 6.7 54 105-162 16-73 (104)
195 cd03019 DsbA_DsbA DsbA family, 96.4 0.0064 1.4E-07 45.6 5.0 40 100-139 14-54 (178)
196 KOG2603 Oligosaccharyltransfer 96.3 0.023 5.1E-07 47.4 7.8 85 76-164 37-134 (331)
197 PF13462 Thioredoxin_4: Thiore 96.2 0.015 3.3E-07 42.7 5.7 44 99-142 10-56 (162)
198 cd02981 PDI_b_family Protein D 96.1 0.076 1.7E-06 35.8 8.5 69 82-163 2-71 (97)
199 cd03072 PDI_b'_ERp44 PDIb' fam 96.0 0.051 1.1E-06 38.6 7.7 71 86-164 5-81 (111)
200 cd03060 GST_N_Omega_like GST_N 95.6 0.053 1.1E-06 34.8 5.9 54 106-163 2-55 (71)
201 cd03073 PDI_b'_ERp72_ERp57 PDI 95.5 0.074 1.6E-06 37.8 6.7 49 114-164 31-85 (111)
202 PRK10954 periplasmic protein d 95.4 0.025 5.5E-07 44.2 4.5 40 101-140 37-80 (207)
203 COG1331 Highly conserved prote 95.1 0.043 9.3E-07 50.1 5.4 71 87-163 33-115 (667)
204 cd03031 GRX_GRX_like Glutaredo 95.0 0.068 1.5E-06 40.0 5.6 55 105-164 2-68 (147)
205 cd03013 PRX5_like Peroxiredoxi 94.6 0.087 1.9E-06 39.4 5.4 53 102-154 31-88 (155)
206 PHA03075 glutaredoxin-like pro 94.4 0.073 1.6E-06 38.3 4.2 36 102-140 2-37 (123)
207 PF01216 Calsequestrin: Calseq 94.2 0.24 5.2E-06 42.2 7.5 81 76-164 31-120 (383)
208 cd03035 ArsC_Yffb Arsenate Red 94.1 0.019 4.2E-07 40.4 0.8 44 105-153 1-49 (105)
209 KOG2640 Thioredoxin [Function 94.1 0.011 2.4E-07 49.2 -0.6 63 101-165 76-139 (319)
210 COG1225 Bcp Peroxiredoxin [Pos 93.9 0.19 4.2E-06 38.1 5.8 44 100-143 29-75 (157)
211 cd02978 KaiB_like KaiB-like fa 93.7 0.32 7E-06 32.1 5.9 56 105-162 4-61 (72)
212 cd03051 GST_N_GTT2_like GST_N 93.6 0.27 5.8E-06 31.0 5.4 56 106-164 2-59 (74)
213 cd00570 GST_N_family Glutathio 93.2 0.28 6E-06 29.9 4.9 55 106-163 2-56 (71)
214 cd03067 PDI_b_PDIR_N PDIb fami 92.7 0.89 1.9E-05 32.2 7.2 69 82-155 4-73 (112)
215 cd02977 ArsC_family Arsenate R 92.5 0.076 1.7E-06 36.9 1.6 33 105-142 1-33 (105)
216 PF07912 ERp29_N: ERp29, N-ter 92.3 1.6 3.4E-05 31.9 8.3 71 87-164 11-91 (126)
217 PF00837 T4_deiodinase: Iodoth 92.2 0.25 5.5E-06 39.9 4.5 66 76-143 79-145 (237)
218 TIGR01617 arsC_related transcr 91.9 0.36 7.7E-06 34.3 4.7 33 106-143 2-34 (117)
219 cd03037 GST_N_GRX2 GST_N famil 91.9 0.39 8.5E-06 30.5 4.4 52 107-163 3-54 (71)
220 cd03040 GST_N_mPGES2 GST_N fam 91.8 0.99 2.2E-05 29.0 6.3 53 105-163 2-54 (77)
221 PF09673 TrbC_Ftype: Type-F co 91.7 1 2.2E-05 32.1 6.8 71 87-165 10-80 (113)
222 cd03036 ArsC_like Arsenate Red 91.6 0.088 1.9E-06 37.3 1.2 33 106-143 2-34 (111)
223 cd03059 GST_N_SspA GST_N famil 91.6 0.57 1.2E-05 29.6 4.9 53 106-162 2-54 (73)
224 PRK09301 circadian clock prote 91.6 0.67 1.4E-05 32.7 5.5 60 101-162 5-66 (103)
225 TIGR02654 circ_KaiB circadian 91.5 0.73 1.6E-05 31.6 5.5 59 102-162 3-63 (87)
226 cd03041 GST_N_2GST_N GST_N fam 91.4 0.44 9.5E-06 31.0 4.4 54 105-163 2-57 (77)
227 PF06053 DUF929: Domain of unk 91.2 0.62 1.3E-05 37.9 5.7 58 99-164 56-113 (249)
228 PRK01655 spxA transcriptional 90.5 0.16 3.4E-06 37.1 1.7 34 105-143 2-35 (131)
229 cd03045 GST_N_Delta_Epsilon GS 89.8 1.1 2.4E-05 28.3 5.1 54 106-162 2-57 (74)
230 PRK12559 transcriptional regul 89.4 0.3 6.6E-06 35.7 2.4 33 105-142 2-34 (131)
231 cd03055 GST_N_Omega GST_N fami 88.1 2.4 5.1E-05 28.3 6.0 55 105-163 19-73 (89)
232 cd03032 ArsC_Spx Arsenate Redu 88.0 0.27 5.9E-06 34.9 1.3 34 105-143 2-35 (115)
233 cd02990 UAS_FAF1 UAS family, F 88.0 3.5 7.6E-05 30.5 7.2 74 88-163 4-103 (136)
234 COG4545 Glutaredoxin-related p 87.2 1.5 3.3E-05 29.3 4.3 55 106-165 5-73 (85)
235 COG3019 Predicted metal-bindin 87.2 1.8 3.9E-05 32.3 5.2 46 103-155 26-71 (149)
236 COG1999 Uncharacterized protei 86.4 3.3 7.1E-05 32.6 6.7 63 100-163 66-137 (207)
237 PF13417 GST_N_3: Glutathione 86.3 3.4 7.4E-05 26.5 5.8 51 107-161 1-51 (75)
238 PRK13344 spxA transcriptional 85.6 0.45 9.7E-06 34.9 1.4 34 105-143 2-35 (132)
239 PF13743 Thioredoxin_5: Thiore 85.5 1.8 3.9E-05 33.0 4.7 30 107-136 2-32 (176)
240 TIGR02742 TrbC_Ftype type-F co 84.8 4.8 0.0001 29.5 6.5 69 88-165 12-80 (130)
241 COG1651 DsbG Protein-disulfide 84.7 2.1 4.6E-05 33.8 5.0 39 100-138 83-121 (244)
242 PF02630 SCO1-SenC: SCO1/SenC; 84.6 3 6.4E-05 31.7 5.6 52 100-151 51-108 (174)
243 PF07689 KaiB: KaiB domain; I 84.0 0.43 9.2E-06 32.3 0.6 52 108-161 3-56 (82)
244 PF01323 DSBA: DSBA-like thior 83.9 2.3 4.9E-05 32.0 4.7 35 104-138 1-35 (193)
245 cd03033 ArsC_15kD Arsenate Red 83.7 0.54 1.2E-05 33.5 1.1 45 105-154 2-51 (113)
246 cd02974 AhpF_NTD_N Alkyl hydro 83.1 13 0.00027 25.6 7.9 49 88-139 8-56 (94)
247 PF04592 SelP_N: Selenoprotein 78.3 5.6 0.00012 32.1 5.2 44 100-143 25-73 (238)
248 cd03056 GST_N_4 GST_N family, 78.2 7.7 0.00017 24.1 5.0 54 106-162 2-57 (73)
249 PRK13730 conjugal transfer pil 77.9 14 0.00031 29.3 7.2 20 146-165 152-171 (212)
250 PF04134 DUF393: Protein of un 76.6 4.3 9.3E-05 28.2 3.8 44 108-154 2-45 (114)
251 cd03069 PDI_b_ERp57 PDIb famil 76.2 22 0.00048 24.4 7.3 69 81-163 2-71 (104)
252 cd03025 DsbA_FrnE_like DsbA fa 74.6 4.5 9.8E-05 30.4 3.7 27 105-131 3-29 (193)
253 TIGR00014 arsC arsenate reduct 74.3 2 4.3E-05 30.5 1.5 44 106-154 2-50 (114)
254 COG1393 ArsC Arsenate reductas 74.2 3.3 7.1E-05 29.7 2.6 50 104-153 2-51 (117)
255 cd03034 ArsC_ArsC Arsenate Red 70.9 2.6 5.5E-05 29.8 1.4 43 106-153 2-49 (112)
256 cd03049 GST_N_3 GST_N family, 69.4 15 0.00033 22.9 4.8 56 107-164 3-58 (73)
257 PRK10853 putative reductase; P 69.3 2.4 5.2E-05 30.4 1.0 45 105-154 2-51 (118)
258 TIGR01616 nitro_assoc nitrogen 68.6 2.5 5.5E-05 30.7 1.0 23 104-126 2-24 (126)
259 PF11287 DUF3088: Protein of u 66.3 9.8 0.00021 27.2 3.6 53 112-165 23-77 (112)
260 cd03052 GST_N_GDAP1 GST_N fami 65.7 22 0.00048 22.6 5.1 54 106-162 2-57 (73)
261 COG0386 BtuE Glutathione perox 65.7 19 0.00041 27.4 5.2 61 100-162 24-96 (162)
262 PRK10026 arsenate reductase; P 65.6 5.8 0.00013 29.5 2.5 45 105-154 4-53 (141)
263 PF00255 GSHPx: Glutathione pe 64.4 17 0.00038 25.6 4.6 43 100-143 20-64 (108)
264 PRK15317 alkyl hydroperoxide r 63.9 40 0.00088 29.9 7.9 47 88-137 8-54 (517)
265 cd03066 PDI_b_Calsequestrin_mi 62.8 45 0.00098 22.6 7.7 71 81-163 2-73 (102)
266 KOG2244 Highly conserved prote 62.6 16 0.00034 33.4 4.9 70 93-163 104-184 (786)
267 cd03068 PDI_b_ERp72 PDIb famil 60.9 53 0.0011 22.7 8.6 71 81-163 2-73 (107)
268 cd03053 GST_N_Phi GST_N family 60.8 34 0.00073 21.4 5.2 55 105-162 2-58 (76)
269 PF13743 Thioredoxin_5: Thiore 60.5 7.5 0.00016 29.6 2.3 19 146-164 137-155 (176)
270 TIGR03140 AhpF alkyl hydropero 60.2 60 0.0013 28.8 8.3 51 87-140 7-57 (515)
271 KOG2507 Ubiquitin regulatory p 59.4 39 0.00084 29.9 6.6 75 90-165 8-86 (506)
272 cd03025 DsbA_FrnE_like DsbA fa 59.1 8.6 0.00019 28.8 2.5 20 146-165 159-178 (193)
273 TIGR03439 methyl_EasF probable 57.1 18 0.00039 30.5 4.3 55 103-160 78-132 (319)
274 PRK09481 sspA stringent starva 54.5 41 0.00088 25.8 5.7 58 101-162 7-64 (211)
275 cd00307 RuBisCO_small_like Rib 52.7 13 0.00029 25.1 2.3 35 108-142 28-72 (84)
276 COG1519 KdtA 3-deoxy-D-manno-o 51.7 59 0.0013 28.6 6.6 50 104-153 50-99 (419)
277 PF09822 ABC_transp_aux: ABC-t 51.6 1.2E+02 0.0026 24.3 8.2 57 103-159 26-91 (271)
278 PRK10387 glutaredoxin 2; Provi 51.0 33 0.00073 25.9 4.6 52 107-163 3-54 (210)
279 PF14424 Toxin-deaminase: The 49.8 78 0.0017 23.1 6.2 32 105-139 98-131 (133)
280 COG3634 AhpF Alkyl hydroperoxi 48.4 86 0.0019 27.5 6.9 61 100-162 115-175 (520)
281 COG2761 FrnE Predicted dithiol 47.9 15 0.00033 29.4 2.3 17 146-162 174-190 (225)
282 cd03061 GST_N_CLIC GST_N famil 46.9 55 0.0012 22.3 4.7 49 110-162 19-67 (91)
283 TIGR03759 conj_TIGR03759 integ 46.6 51 0.0011 26.0 4.9 50 102-154 109-160 (200)
284 cd03058 GST_N_Tau GST_N family 45.9 72 0.0016 19.8 5.3 52 107-162 3-55 (74)
285 PRK10954 periplasmic protein d 45.6 17 0.00038 28.1 2.3 18 146-163 157-174 (207)
286 cd03044 GST_N_EF1Bgamma GST_N 45.3 73 0.0016 19.9 4.9 54 107-163 3-57 (75)
287 cd03022 DsbA_HCCA_Iso DsbA fam 41.0 24 0.00051 26.3 2.4 18 145-162 156-173 (192)
288 PF01323 DSBA: DSBA-like thior 40.5 26 0.00057 26.0 2.5 19 146-164 157-175 (193)
289 TIGR02182 GRXB Glutaredoxin, G 40.1 1E+02 0.0022 23.7 5.8 50 108-162 3-52 (209)
290 KOG2990 C2C2-type Zn-finger pr 39.5 19 0.00041 30.0 1.6 37 83-121 24-63 (317)
291 PF06764 DUF1223: Protein of u 38.8 91 0.002 24.5 5.4 38 105-143 2-39 (202)
292 cd03074 PDI_b'_Calsequestrin_C 37.5 1.2E+02 0.0026 21.8 5.2 43 101-143 20-65 (120)
293 cd03030 GRX_SH3BGR Glutaredoxi 37.2 1E+02 0.0022 20.9 4.8 33 132-164 30-68 (92)
294 PF14421 LmjF365940-deam: A di 36.6 45 0.00098 26.0 3.2 29 112-143 156-184 (193)
295 cd03054 GST_N_Metaxin GST_N fa 36.2 1.1E+02 0.0023 18.9 4.6 42 110-162 13-54 (72)
296 cd03050 GST_N_Theta GST_N fami 35.5 1.1E+02 0.0024 19.0 5.6 53 107-162 3-57 (76)
297 PF03960 ArsC: ArsC family; I 34.8 89 0.0019 21.5 4.4 41 108-153 1-46 (110)
298 cd03039 GST_N_Sigma_like GST_N 34.6 59 0.0013 20.1 3.2 52 108-162 4-55 (72)
299 COG2077 Tpx Peroxiredoxin [Pos 33.8 2E+02 0.0044 21.8 6.2 57 100-156 44-101 (158)
300 COG1651 DsbG Protein-disulfide 32.5 38 0.00082 26.6 2.4 26 103-128 120-145 (244)
301 cd06353 PBP1_BmpA_Med_like Per 31.6 1.6E+02 0.0034 23.5 5.9 49 86-141 42-90 (258)
302 KOG2792 Putative cytochrome C 31.5 1.5E+02 0.0032 24.6 5.5 44 100-143 138-189 (280)
303 cd01840 SGNH_hydrolase_yrhL_li 31.5 1.6E+02 0.0036 21.0 5.5 49 86-137 65-115 (150)
304 PF04413 Glycos_transf_N: 3-De 31.4 87 0.0019 24.0 4.2 46 104-150 22-67 (186)
305 TIGR01287 nifH nitrogenase iro 31.4 30 0.00066 27.7 1.7 51 100-154 220-270 (275)
306 PRK11752 putative S-transferas 31.2 2.1E+02 0.0046 22.9 6.6 56 108-163 47-107 (264)
307 cd03038 GST_N_etherase_LigE GS 31.0 56 0.0012 21.0 2.6 48 110-162 13-63 (84)
308 COG0278 Glutaredoxin-related p 29.9 1.6E+02 0.0035 20.7 4.8 45 102-152 15-63 (105)
309 KOG1651 Glutathione peroxidase 29.8 72 0.0016 24.5 3.3 44 100-143 33-78 (171)
310 PF07700 HNOB: Heme NO binding 29.8 1.4E+02 0.0031 22.3 5.0 40 101-140 127-168 (171)
311 COG0450 AhpC Peroxiredoxin [Po 29.3 93 0.002 24.4 3.9 43 101-143 33-78 (194)
312 COG3011 Predicted thiol-disulf 29.2 2.4E+02 0.0051 20.9 5.9 52 100-155 5-57 (137)
313 COG5429 Uncharacterized secret 29.1 1.4E+02 0.003 24.4 4.9 57 102-159 42-114 (261)
314 PHA02513 V1 structural protein 28.1 32 0.00069 24.7 1.1 38 85-133 22-59 (135)
315 KOG4163 Prolyl-tRNA synthetase 27.8 48 0.001 29.5 2.3 34 75-116 461-494 (551)
316 COG2093 DNA-directed RNA polym 27.7 22 0.00048 22.8 0.2 32 125-161 28-59 (64)
317 cd03042 GST_N_Zeta GST_N famil 27.5 1.5E+02 0.0032 17.9 5.0 52 108-162 4-57 (73)
318 cd00568 TPP_enzymes Thiamine p 27.2 1.2E+02 0.0026 21.9 4.1 32 78-109 136-167 (168)
319 PRK15113 glutathione S-transfe 27.1 2.4E+02 0.0052 21.5 6.1 58 102-162 3-64 (214)
320 cd02015 TPP_AHAS Thiamine pyro 26.4 1.4E+02 0.003 22.4 4.5 33 79-111 142-174 (186)
321 PF14639 YqgF: Holliday-juncti 26.3 1.1E+02 0.0023 22.8 3.8 49 88-141 53-107 (150)
322 PF12532 DUF3732: Protein of u 25.6 50 0.0011 25.7 1.9 20 147-166 90-109 (193)
323 KOG1422 Intracellular Cl- chan 25.2 2E+02 0.0043 23.1 5.1 45 112-161 20-65 (221)
324 cd03375 TPP_OGFOR Thiamine pyr 25.1 1.2E+02 0.0027 23.1 4.0 28 83-110 156-183 (193)
325 KOG4127 Renal dipeptidase [Pos 24.7 38 0.00083 29.3 1.1 54 87-143 287-344 (419)
326 PF02775 TPP_enzyme_C: Thiamin 24.7 1.1E+02 0.0025 22.0 3.6 30 79-108 122-153 (153)
327 cd02004 TPP_BZL_OCoD_HPCL Thia 24.2 1.5E+02 0.0032 21.9 4.2 31 79-109 140-170 (172)
328 PF10865 DUF2703: Domain of un 24.1 1.7E+02 0.0037 21.1 4.3 51 111-166 13-71 (120)
329 TIGR00595 priA primosomal prot 24.1 1.3E+02 0.0028 26.9 4.5 24 120-143 272-295 (505)
330 PF07315 DUF1462: Protein of u 24.0 1.3E+02 0.0027 20.8 3.3 32 112-143 8-48 (93)
331 PF14437 MafB19-deam: MafB19-l 23.8 3.1E+02 0.0066 20.6 5.7 49 87-138 85-135 (146)
332 PHA02096 hypothetical protein 23.5 1.5E+02 0.0032 20.1 3.5 30 103-132 26-55 (103)
333 cd02010 TPP_ALS Thiamine pyrop 23.5 1.4E+02 0.0031 22.3 4.1 32 79-110 138-169 (177)
334 PF05679 CHGN: Chondroitin N-a 23.3 3.5E+02 0.0075 24.2 7.0 41 99-139 279-322 (499)
335 cd02009 TPP_SHCHC_synthase Thi 23.1 1.4E+02 0.0029 22.4 3.8 31 79-109 143-173 (175)
336 PF02310 B12-binding: B12 bind 23.1 2.4E+02 0.0053 19.0 5.0 50 88-141 41-90 (121)
337 cd00862 ProRS_anticodon_zinc P 22.9 86 0.0019 24.3 2.8 29 81-117 128-158 (202)
338 cd00599 GH25_muramidase Endo-N 22.7 1.8E+02 0.0039 21.7 4.5 58 86-143 36-93 (186)
339 TIGR03765 ICE_PFL_4695 integra 22.2 95 0.0021 22.0 2.6 41 120-165 62-102 (105)
340 COG4837 Uncharacterized protei 22.2 2.8E+02 0.0061 19.3 5.0 38 105-142 7-54 (106)
341 COG3581 Uncharacterized protei 22.0 2.6E+02 0.0056 24.6 5.6 57 84-141 53-113 (420)
342 cd03076 GST_N_Pi GST_N family, 21.7 1.8E+02 0.004 18.0 3.8 52 107-162 4-55 (73)
343 cd02002 TPP_BFDC Thiamine pyro 21.5 1.7E+02 0.0037 21.5 4.1 31 79-109 147-177 (178)
344 PRK06163 hypothetical protein; 21.4 1.5E+02 0.0033 23.0 3.9 32 81-112 143-174 (202)
345 COG1744 Med Uncharacterized AB 21.3 1.9E+02 0.0041 24.5 4.7 50 84-140 80-129 (345)
346 COG1198 PriA Primosomal protei 20.9 1.4E+02 0.003 28.3 4.0 24 121-144 495-518 (730)
347 cd02003 TPP_IolD Thiamine pyro 20.6 1.5E+02 0.0033 22.8 3.7 32 79-110 152-183 (205)
No 1
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.4e-21 Score=137.86 Aligned_cols=81 Identities=28% Similarity=0.500 Sum_probs=72.3
Q ss_pred EecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 83 VIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 83 ~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
.+.+.++++........+++++||+|||+|||+|+.+.|.+++|+++|+++.|++||+|+ ..+++++|+|.++|||++
T Consensus 3 ~v~~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde--~~~~~~~~~V~~~PTf~f 80 (106)
T KOG0907|consen 3 EVETVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE--LEEVAKEFNVKAMPTFVF 80 (106)
T ss_pred eEEehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc--CHhHHHhcCceEeeEEEE
Confidence 455566777776666667899999999999999999999999999999999999999999 499999999999999999
Q ss_pred cCC
Q 031078 163 PSF 165 (166)
Q Consensus 163 ~d~ 165 (166)
++.
T Consensus 81 ~k~ 83 (106)
T KOG0907|consen 81 YKG 83 (106)
T ss_pred EEC
Confidence 864
No 2
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.5e-21 Score=143.32 Aligned_cols=82 Identities=29% Similarity=0.599 Sum_probs=76.5
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcc
Q 031078 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAV 157 (166)
Q Consensus 79 ~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~v 157 (166)
.....+.+.++|++.+. +.+.||+|+|||+||+||+.+.|.++++..+|.| +++++||+|++ .+++.+|+|+++
T Consensus 42 ~~~~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~--~ela~~Y~I~av 116 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH--PELAEDYEISAV 116 (150)
T ss_pred cccccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc--cchHhhcceeee
Confidence 57788899999999875 4889999999999999999999999999999987 99999999998 999999999999
Q ss_pred eEEEEcCC
Q 031078 158 VSSLSPSF 165 (166)
Q Consensus 158 PTll~~d~ 165 (166)
||+++++.
T Consensus 117 Ptvlvfkn 124 (150)
T KOG0910|consen 117 PTVLVFKN 124 (150)
T ss_pred eEEEEEEC
Confidence 99999874
No 3
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.84 E-value=1.4e-20 Score=135.34 Aligned_cols=74 Identities=12% Similarity=0.201 Sum_probs=67.7
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 87 ~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
.++|++.+.. +.++++||+|||+||++|+.|.|.++++++++++ +.|++||+|+. ++++++|+|.++||+++++
T Consensus 2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~--~~la~~~~V~~iPTf~~fk 76 (114)
T cd02954 2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV--PDFNKMYELYDPPTVMFFF 76 (114)
T ss_pred HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC--HHHHHHcCCCCCCEEEEEE
Confidence 5788888752 3567999999999999999999999999999998 79999999998 9999999999999999886
No 4
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.81 E-value=2.6e-19 Score=126.11 Aligned_cols=77 Identities=22% Similarity=0.226 Sum_probs=68.6
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc-hHHHHHhCCCCcceEEEEcC
Q 031078 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-LESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~-~~~l~~~~~V~~vPTll~~d 164 (166)
+.++|++.+.+ ..++++||+|||+||++|+.+.|.+++++++++++.|++||+|++. ..+++++|+|.++||+++++
T Consensus 2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 67899999864 3578999999999999999999999999999978999999999862 24799999999999999874
No 5
>PHA02278 thioredoxin-like protein
Probab=99.81 E-value=2.7e-19 Score=126.65 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=66.8
Q ss_pred cCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcc--hHHHHHhCCCCcceEEE
Q 031078 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKG--LESTLSKLNISAVVSSL 161 (166)
Q Consensus 85 ~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~--~~~l~~~~~V~~vPTll 161 (166)
.+.++|++.+. .++++||+|||+|||+|+.+.|.++++++++.+ +.|+++|+|.+. ..+++++|+|.++||++
T Consensus 2 ~~~~~~~~~i~----~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 2 NSLVDLNTAIR----QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred CCHHHHHHHHh----CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence 46788988874 678999999999999999999999999988543 789999999752 26899999999999999
Q ss_pred EcCC
Q 031078 162 SPSF 165 (166)
Q Consensus 162 ~~d~ 165 (166)
+++.
T Consensus 78 ~fk~ 81 (103)
T PHA02278 78 GYKD 81 (103)
T ss_pred EEEC
Confidence 9864
No 6
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.80 E-value=2.5e-19 Score=128.42 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=68.6
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 87 ~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
.++|++.+... .++++||.|+|+||++|+.|.|.+++++++|++ +.|++||+|+. ++++++|+|.++||+++++
T Consensus 2 ~~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev--~dva~~y~I~amPtfvffk 76 (114)
T cd02986 2 KKEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKV--PVYTQYFDISYIPSTIFFF 76 (114)
T ss_pred HHHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecccc--HHHHHhcCceeCcEEEEEE
Confidence 47888888753 688999999999999999999999999999999 99999999997 9999999999999999876
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.80 E-value=5.2e-19 Score=127.17 Aligned_cols=84 Identities=10% Similarity=0.037 Sum_probs=71.2
Q ss_pred CCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHH-HhCCC
Q 031078 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTL-SKLNI 154 (166)
Q Consensus 77 ~~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~-~~~~V 154 (166)
+.+.+++++ .++|++++. ..+.++.++|+|||+||++|+.+.|.++++++++.+ +.|++||+|++ .+++ ++|+|
T Consensus 7 ~~~~v~~l~-~~~f~~~~~-v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~--~~l~~~~~~I 82 (113)
T cd03006 7 QRSPVLDFY-KGQLDYAEE-LRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP--QGKCRKQKHF 82 (113)
T ss_pred CCCCeEEec-hhhhHHHHh-cccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC--hHHHHHhcCC
Confidence 345566655 588888743 234778999999999999999999999999999987 89999999988 7888 59999
Q ss_pred CcceEEEEcC
Q 031078 155 SAVVSSLSPS 164 (166)
Q Consensus 155 ~~vPTll~~d 164 (166)
.++||+++++
T Consensus 83 ~~~PTl~lf~ 92 (113)
T cd03006 83 FYFPVIHLYY 92 (113)
T ss_pred cccCEEEEEE
Confidence 9999999875
No 8
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.80 E-value=7.7e-19 Score=126.03 Aligned_cols=82 Identities=17% Similarity=0.149 Sum_probs=75.8
Q ss_pred CCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcc
Q 031078 78 PSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAV 157 (166)
Q Consensus 78 ~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~v 157 (166)
-+.+..|.+.++|++.+. ++++++|+||++||++|+.+.|.++++++++++++|++||+++. ++++++|+|.++
T Consensus 3 ~g~v~~i~~~~~~~~~i~----~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~--~~l~~~~~v~~v 76 (113)
T cd02989 3 HGKYREVSDEKEFFEIVK----SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA--PFLVEKLNIKVL 76 (113)
T ss_pred CCCeEEeCCHHHHHHHHh----CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC--HHHHHHCCCccC
Confidence 467889999999999986 45799999999999999999999999999999999999999998 899999999999
Q ss_pred eEEEEcCC
Q 031078 158 VSSLSPSF 165 (166)
Q Consensus 158 PTll~~d~ 165 (166)
||+++++.
T Consensus 77 Pt~l~fk~ 84 (113)
T cd02989 77 PTVILFKN 84 (113)
T ss_pred CEEEEEEC
Confidence 99999863
No 9
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.78 E-value=2.1e-18 Score=121.23 Aligned_cols=77 Identities=18% Similarity=0.292 Sum_probs=68.9
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC--cEEEEEECCCcchHHHHHhCCCCcceE
Q 031078 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQKGLESTLSKLNISAVVS 159 (166)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~~~~vDid~~~~~~l~~~~~V~~vPT 159 (166)
+.+.+.++|++++. .+++++|+|||+||++|+.+.|.++++++++++ +.|+++|+| + .+++++|+|+++||
T Consensus 2 ~~i~~~~~~~~~i~----~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~--~~~~~~~~v~~~Pt 74 (102)
T cd02948 2 VEINNQEEWEELLS----NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T--IDTLKRYRGKCEPT 74 (102)
T ss_pred eEccCHHHHHHHHc----cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C--HHHHHHcCCCcCcE
Confidence 35789999999875 578999999999999999999999999999974 789999999 4 68899999999999
Q ss_pred EEEcCC
Q 031078 160 SLSPSF 165 (166)
Q Consensus 160 ll~~d~ 165 (166)
+++++.
T Consensus 75 ~~~~~~ 80 (102)
T cd02948 75 FLFYKN 80 (102)
T ss_pred EEEEEC
Confidence 998763
No 10
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.78 E-value=2.2e-18 Score=120.62 Aligned_cols=79 Identities=23% Similarity=0.375 Sum_probs=69.8
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceE
Q 031078 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVS 159 (166)
Q Consensus 81 v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPT 159 (166)
++++ +.++|++.+. +.+++++|+||++||++|+.+.|.++++++++.+ +.|++||++++ .+++++|+|.++||
T Consensus 3 v~~l-~~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~i~~~Pt 76 (104)
T cd03004 3 VITL-TPEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY--ESLCQQANIRAYPT 76 (104)
T ss_pred ceEc-CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch--HHHHHHcCCCcccE
Confidence 3444 5789999875 3567999999999999999999999999999875 99999999998 89999999999999
Q ss_pred EEEcCC
Q 031078 160 SLSPSF 165 (166)
Q Consensus 160 ll~~d~ 165 (166)
+++++.
T Consensus 77 ~~~~~~ 82 (104)
T cd03004 77 IRLYPG 82 (104)
T ss_pred EEEEcC
Confidence 998864
No 11
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.78 E-value=2.3e-18 Score=120.24 Aligned_cols=77 Identities=10% Similarity=0.188 Sum_probs=68.8
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceE
Q 031078 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVS 159 (166)
Q Consensus 81 v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPT 159 (166)
++.+ +.++|++.+. ++++++|+||++||++|+.+.|.++++++++++ ++|++||+|++ +.++++|+|.++||
T Consensus 3 ~~~l-~~~~f~~~v~----~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt 75 (101)
T cd03003 3 IVTL-DRGDFDAAVN----SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD--RMLCRSQGVNSYPS 75 (101)
T ss_pred eEEc-CHhhHHHHhc----CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc--HHHHHHcCCCccCE
Confidence 3444 5789999874 458999999999999999999999999999986 89999999998 89999999999999
Q ss_pred EEEcC
Q 031078 160 SLSPS 164 (166)
Q Consensus 160 ll~~d 164 (166)
+++++
T Consensus 76 ~~~~~ 80 (101)
T cd03003 76 LYVFP 80 (101)
T ss_pred EEEEc
Confidence 98875
No 12
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.78 E-value=1.2e-18 Score=129.69 Aligned_cols=80 Identities=11% Similarity=0.198 Sum_probs=70.5
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceE
Q 031078 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVS 159 (166)
Q Consensus 81 v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPT 159 (166)
+..+.+.++|++.+.. ..++++||.|||+||++|+.+.|.++++++++++ +.|++||+|+. ++++++|+|++.|+
T Consensus 5 l~~l~s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~--~dla~~y~I~~~~t 80 (142)
T PLN00410 5 LPHLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV--PDFNTMYELYDPCT 80 (142)
T ss_pred HhhhCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC--HHHHHHcCccCCCc
Confidence 3467889999999863 3678999999999999999999999999999998 88899999998 99999999997766
Q ss_pred EE-EcC
Q 031078 160 SL-SPS 164 (166)
Q Consensus 160 ll-~~d 164 (166)
++ +++
T Consensus 81 ~~~ffk 86 (142)
T PLN00410 81 VMFFFR 86 (142)
T ss_pred EEEEEE
Confidence 66 654
No 13
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.77 E-value=2.2e-18 Score=121.02 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=65.2
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECC-CcchHHHHHhCCCCcceEEEEcCC
Q 031078 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID-QKGLESTLSKLNISAVVSSLSPSF 165 (166)
Q Consensus 88 ~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid-~~~~~~l~~~~~V~~vPTll~~d~ 165 (166)
+++.+++. ..++++++|+|||+||++|+.+.|.+++++++++++.+++||.+ +. +.++++|+|.++||+++++.
T Consensus 7 ~~~~~~~~--~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~--~~l~~~~~V~~~PT~~lf~~ 81 (100)
T cd02999 7 NIALDLMA--FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIK--PSLLSRYGVVGFPTILLFNS 81 (100)
T ss_pred hHHHHHHH--hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCC--HHHHHhcCCeecCEEEEEcC
Confidence 45556554 35788999999999999999999999999999999999999998 55 89999999999999999874
No 14
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.76 E-value=4.1e-18 Score=121.80 Aligned_cols=83 Identities=22% Similarity=0.243 Sum_probs=72.4
Q ss_pred CCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcc
Q 031078 78 PSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAV 157 (166)
Q Consensus 78 ~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~v 157 (166)
.+.+.++++ ++|++.+.. .+.+++++|+||++||++|+.+.|.++++++++++++|++||+++. .++++|+|.++
T Consensus 3 ~g~v~~i~~-~~f~~~i~~-~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~---~l~~~~~i~~~ 77 (113)
T cd02957 3 FGEVREISS-KEFLEEVTK-ASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA---FLVNYLDIKVL 77 (113)
T ss_pred CceEEEEcH-HHHHHHHHc-cCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh---HHHHhcCCCcC
Confidence 356777887 999998863 1224799999999999999999999999999999999999999975 88999999999
Q ss_pred eEEEEcCC
Q 031078 158 VSSLSPSF 165 (166)
Q Consensus 158 PTll~~d~ 165 (166)
||+++++.
T Consensus 78 Pt~~~f~~ 85 (113)
T cd02957 78 PTLLVYKN 85 (113)
T ss_pred CEEEEEEC
Confidence 99999863
No 15
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.75 E-value=6.3e-18 Score=116.61 Aligned_cols=73 Identities=16% Similarity=0.295 Sum_probs=65.4
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 88 ~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
++|++.+.+ ..+++++|+||++||++|+.+.|.++++++.+++ +.+++||++++ ..++++|+|.++||+++++
T Consensus 1 ~~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~ 74 (96)
T cd02956 1 QNFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ--PQIAQQFGVQALPTVYLFA 74 (96)
T ss_pred CChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC--HHHHHHcCCCCCCEEEEEe
Confidence 357777653 3578999999999999999999999999999976 89999999998 8999999999999999886
No 16
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.75 E-value=1e-17 Score=115.83 Aligned_cols=78 Identities=24% Similarity=0.520 Sum_probs=70.8
Q ss_pred EecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC-CcEEEEEECCCcchHHHHHhCCCCcceEEE
Q 031078 83 VIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQKGLESTLSKLNISAVVSSL 161 (166)
Q Consensus 83 ~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~-~v~~~~vDid~~~~~~l~~~~~V~~vPTll 161 (166)
...+.++|++.+.+ .++++||+||++||++|+.+.|.|++++++++ ++.|+.||++++ ..++++|+|.++||++
T Consensus 2 ~~lt~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~ 76 (103)
T PF00085_consen 2 IVLTDENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN--KELCKKYGVKSVPTII 76 (103)
T ss_dssp EEESTTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS--HHHHHHTTCSSSSEEE
T ss_pred EECCHHHHHHHHHc---cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc--chhhhccCCCCCCEEE
Confidence 34567999999863 57899999999999999999999999999999 699999999987 9999999999999999
Q ss_pred EcCC
Q 031078 162 SPSF 165 (166)
Q Consensus 162 ~~d~ 165 (166)
+++.
T Consensus 77 ~~~~ 80 (103)
T PF00085_consen 77 FFKN 80 (103)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8763
No 17
>PTZ00051 thioredoxin; Provisional
Probab=99.75 E-value=1.5e-17 Score=114.94 Aligned_cols=78 Identities=31% Similarity=0.488 Sum_probs=71.8
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEE
Q 031078 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSS 160 (166)
Q Consensus 81 v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTl 160 (166)
+.++.+.++|++++. .+++++|+||++||++|+.+.+.+++++++++++.|+.+|++++ ..++++|+|.++||+
T Consensus 2 v~~i~~~~~~~~~~~----~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~ 75 (98)
T PTZ00051 2 VHIVTSQAEFESTLS----QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL--SEVAEKENITSMPTF 75 (98)
T ss_pred eEEecCHHHHHHHHh----cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch--HHHHHHCCCceeeEE
Confidence 567889999999875 57899999999999999999999999999999999999999987 899999999999999
Q ss_pred EEcC
Q 031078 161 LSPS 164 (166)
Q Consensus 161 l~~d 164 (166)
++++
T Consensus 76 ~~~~ 79 (98)
T PTZ00051 76 KVFK 79 (98)
T ss_pred EEEe
Confidence 8874
No 18
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.3e-18 Score=135.62 Aligned_cols=81 Identities=28% Similarity=0.554 Sum_probs=76.1
Q ss_pred CeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceE
Q 031078 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVS 159 (166)
Q Consensus 80 ~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPT 159 (166)
.|++|.++.+|+..+.. ..++.++|+|+|.|||+|+++.|.+..|+.+|++..|.+||+|++ +..+..+||.++||
T Consensus 2 ~Vi~v~~d~df~~~ls~--ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c--~~taa~~gV~amPT 77 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSA--AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDEC--RGTAATNGVNAMPT 77 (288)
T ss_pred CeEEecCcHHHHHhhhc--cCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHh--hchhhhcCcccCce
Confidence 68899999999999974 467899999999999999999999999999999999999999999 89999999999999
Q ss_pred EEEcC
Q 031078 160 SLSPS 164 (166)
Q Consensus 160 ll~~d 164 (166)
|+++.
T Consensus 78 Fiff~ 82 (288)
T KOG0908|consen 78 FIFFR 82 (288)
T ss_pred EEEEe
Confidence 99874
No 19
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.74 E-value=1.8e-17 Score=116.54 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=68.8
Q ss_pred cCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceEEEEc
Q 031078 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 85 ~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPTll~~ 163 (166)
.+.++|++.+.. .+++++|+||++||++|+.+.|.++++++++.+ +.++.+|++.+...+++++|+|.++||++++
T Consensus 5 l~~~~~~~~i~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 5 LTPKNFDKVVHN---TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred cchhhHHHHHhc---CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 346889998763 678899999999999999999999999999876 8999999998444899999999999999988
Q ss_pred CC
Q 031078 164 SF 165 (166)
Q Consensus 164 d~ 165 (166)
+.
T Consensus 82 ~~ 83 (109)
T cd03002 82 RP 83 (109)
T ss_pred eC
Confidence 63
No 20
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.73 E-value=3e-17 Score=115.92 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=67.0
Q ss_pred CeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhC----C---CcEEEEEECCCcchHHHHHhC
Q 031078 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH----P---HVTTYKIDIDQKGLESTLSKL 152 (166)
Q Consensus 80 ~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~----~---~v~~~~vDid~~~~~~l~~~~ 152 (166)
.++++ +.++|++.+. .+++++|+|||+||++|+.+.|.++++++++ + .+.+++||+|++ .+++++|
T Consensus 2 ~v~~l-~~~~f~~~i~----~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~--~~l~~~~ 74 (108)
T cd02996 2 EIVSL-TSGNIDDILQ----SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE--SDIADRY 74 (108)
T ss_pred ceEEc-CHhhHHHHHh----cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHhC
Confidence 34555 5789999874 5679999999999999999999999998764 2 389999999998 8999999
Q ss_pred CCCcceEEEEcC
Q 031078 153 NISAVVSSLSPS 164 (166)
Q Consensus 153 ~V~~vPTll~~d 164 (166)
+|+++||+++++
T Consensus 75 ~v~~~Ptl~~~~ 86 (108)
T cd02996 75 RINKYPTLKLFR 86 (108)
T ss_pred CCCcCCEEEEEe
Confidence 999999999875
No 21
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.73 E-value=2.1e-17 Score=117.91 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=66.4
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCCcchHHHHHhCCCCcceEEEEc
Q 031078 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKGLESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~ 163 (166)
+.++|++.+.. ...+++++|+||++||++|+.+.|.+++++++++ ++.+++||+|++ +.++++|+|.++||++++
T Consensus 10 ~~~~~~~~~~~-~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~--~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 10 TFSQYENEIVP-KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE--RRLARKLGAHSVPAIVGI 86 (111)
T ss_pred eHHHHHHhhcc-ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc--HHHHHHcCCccCCEEEEE
Confidence 56778765432 3467899999999999999999999999999986 489999999998 899999999999999987
Q ss_pred C
Q 031078 164 S 164 (166)
Q Consensus 164 d 164 (166)
+
T Consensus 87 ~ 87 (111)
T cd02963 87 I 87 (111)
T ss_pred E
Confidence 5
No 22
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.72 E-value=2.1e-17 Score=120.03 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=71.3
Q ss_pred CCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChh--HH--hHhHHHHHHHHhC--CC-cEEEEEECCCcchHHHH
Q 031078 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGP--CK--FIWPVIGELSAKH--PH-VTTYKIDIDQKGLESTL 149 (166)
Q Consensus 77 ~~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~--Ck--~~~p~l~~la~~~--~~-v~~~~vDid~~~~~~l~ 149 (166)
+...+..++ .++|++.+.+ .+.++|++||+.||++ |+ .+.|.+.++++++ .+ ++|++||+|++ ++++
T Consensus 7 ~~~~v~~lt-~~nF~~~v~~---~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~--~~La 80 (120)
T cd03065 7 GKDRVIDLN-EKNYKQVLKK---YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD--AKVA 80 (120)
T ss_pred CCcceeeCC-hhhHHHHHHh---CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC--HHHH
Confidence 444555554 6999999764 7789999999999987 99 8999999999987 54 99999999998 9999
Q ss_pred HhCCCCcceEEEEcC
Q 031078 150 SKLNISAVVSSLSPS 164 (166)
Q Consensus 150 ~~~~V~~vPTll~~d 164 (166)
++|+|+++||+++++
T Consensus 81 ~~~~I~~iPTl~lfk 95 (120)
T cd03065 81 KKLGLDEEDSIYVFK 95 (120)
T ss_pred HHcCCccccEEEEEE
Confidence 999999999999876
No 23
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.72 E-value=3.8e-17 Score=125.79 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=74.7
Q ss_pred CCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCc
Q 031078 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISA 156 (166)
Q Consensus 77 ~~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~ 156 (166)
.-+.+..|.+.++|.+.+.. ...++++||+||++||++|+.+.|.|++|+++|++++|++||+++. .++.+|+|.+
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~-~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~---~l~~~f~v~~ 135 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDK-EGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT---GASDEFDTDA 135 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHh-cCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch---hhHHhCCCCC
Confidence 35678889888999999864 1234599999999999999999999999999999999999999974 7899999999
Q ss_pred ceEEEEcCC
Q 031078 157 VVSSLSPSF 165 (166)
Q Consensus 157 vPTll~~d~ 165 (166)
+||+++++.
T Consensus 136 vPTlllyk~ 144 (175)
T cd02987 136 LPALLVYKG 144 (175)
T ss_pred CCEEEEEEC
Confidence 999999863
No 24
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.71 E-value=4.4e-17 Score=116.60 Aligned_cols=73 Identities=8% Similarity=0.037 Sum_probs=66.7
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCC--ChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 86 SGEEFNSSLGKVKDDSLPAIFYFTAAW--CGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vvV~F~a~W--C~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
+.++|++.++ .++.+||.||++| |++|+.+.|.+++++++|++ +.|+++|+|++ ++++.+|+|+++||+++
T Consensus 16 ~~~~~~~~~~----~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~--~~la~~f~V~sIPTli~ 89 (111)
T cd02965 16 DAATLDDWLA----AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE--QALAARFGVLRTPALLF 89 (111)
T ss_pred ccccHHHHHh----CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC--HHHHHHcCCCcCCEEEE
Confidence 4578887763 5679999999997 99999999999999999998 88999999998 89999999999999999
Q ss_pred cC
Q 031078 163 PS 164 (166)
Q Consensus 163 ~d 164 (166)
++
T Consensus 90 fk 91 (111)
T cd02965 90 FR 91 (111)
T ss_pred EE
Confidence 85
No 25
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.71 E-value=8.2e-17 Score=110.94 Aligned_cols=76 Identities=29% Similarity=0.371 Sum_probs=67.3
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHh-CCCcEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAK-HPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~-~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
+.++|++++... .+++++|+||++||++|+.+.+.+++++++ ++++.++++|+++. ..++++|+|.++||+++++
T Consensus 1 s~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~~ 76 (97)
T cd02984 1 SEEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL--PEISEKFEITAVPTFVFFR 76 (97)
T ss_pred CHHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC--HHHHHhcCCccccEEEEEE
Confidence 457899988742 268999999999999999999999999999 55699999999987 8999999999999999886
Q ss_pred C
Q 031078 165 F 165 (166)
Q Consensus 165 ~ 165 (166)
.
T Consensus 77 ~ 77 (97)
T cd02984 77 N 77 (97)
T ss_pred C
Confidence 3
No 26
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.71 E-value=1.5e-16 Score=119.89 Aligned_cols=83 Identities=23% Similarity=0.322 Sum_probs=70.9
Q ss_pred CCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCCcchHHHHHhCCCC
Q 031078 78 PSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKGLESTLSKLNIS 155 (166)
Q Consensus 78 ~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~~~~~l~~~~~V~ 155 (166)
...+.++. .++|++.+.. +.+++++|+||++||++|+.+.|.++++++++. +++|++||+|+. ++++++|+|.
T Consensus 27 ~~~v~~l~-~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~--~~la~~~~V~ 101 (152)
T cd02962 27 PEHIKYFT-PKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF--PNVAEKFRVS 101 (152)
T ss_pred CCccEEcC-HHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC--HHHHHHcCce
Confidence 34555554 6889998753 356799999999999999999999999999986 399999999998 8999999998
Q ss_pred c------ceEEEEcCC
Q 031078 156 A------VVSSLSPSF 165 (166)
Q Consensus 156 ~------vPTll~~d~ 165 (166)
+ +||+++++.
T Consensus 102 ~~~~v~~~PT~ilf~~ 117 (152)
T cd02962 102 TSPLSKQLPTIILFQG 117 (152)
T ss_pred ecCCcCCCCEEEEEEC
Confidence 8 999998863
No 27
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.70 E-value=1.8e-16 Score=110.07 Aligned_cols=75 Identities=17% Similarity=0.253 Sum_probs=67.2
Q ss_pred cCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceEEEEc
Q 031078 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 85 ~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPTll~~ 163 (166)
.+.++|++.+.. .+++++|+||++||++|+.+.|.++++++++++ +.++++|++++ .+++++|+|+++|+++++
T Consensus 5 l~~~~~~~~i~~---~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 5 LTDSNFDKKVLN---SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH--QSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred cCHHhHHHHHhc---CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch--HHHHHHCCCCccCEEEEE
Confidence 356899988753 566899999999999999999999999999875 99999999987 899999999999999987
Q ss_pred C
Q 031078 164 S 164 (166)
Q Consensus 164 d 164 (166)
+
T Consensus 80 ~ 80 (103)
T cd03001 80 G 80 (103)
T ss_pred C
Confidence 6
No 28
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.70 E-value=7.2e-17 Score=120.18 Aligned_cols=73 Identities=16% Similarity=0.343 Sum_probs=63.8
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 88 ~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
.+|++.+ ..++++||+||++||++|+.+.|.++++++++.+ +.|+.||+|......++++|+|.++||+++++
T Consensus 11 ~~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~ 84 (142)
T cd02950 11 TPPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLD 84 (142)
T ss_pred CCHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEEC
Confidence 4555554 3688999999999999999999999999999975 88999999976456889999999999999985
No 29
>PRK09381 trxA thioredoxin; Provisional
Probab=99.70 E-value=1.7e-16 Score=112.06 Aligned_cols=79 Identities=28% Similarity=0.538 Sum_probs=69.3
Q ss_pred CeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcce
Q 031078 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVV 158 (166)
Q Consensus 80 ~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vP 158 (166)
.++++. .++|++.+. +.+++++|+||++||++|+.+.|.++++++++++ +.++.+|++.. ..++++|+|.++|
T Consensus 4 ~v~~~~-~~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~P 77 (109)
T PRK09381 4 KIIHLT-DDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIP 77 (109)
T ss_pred cceeeC-hhhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC--hhHHHhCCCCcCC
Confidence 456664 478988754 3577999999999999999999999999999976 99999999998 8899999999999
Q ss_pred EEEEcC
Q 031078 159 SSLSPS 164 (166)
Q Consensus 159 Tll~~d 164 (166)
|+++++
T Consensus 78 t~~~~~ 83 (109)
T PRK09381 78 TLLLFK 83 (109)
T ss_pred EEEEEe
Confidence 999875
No 30
>PRK10996 thioredoxin 2; Provisional
Probab=99.70 E-value=3.4e-16 Score=116.10 Aligned_cols=83 Identities=22% Similarity=0.490 Sum_probs=71.8
Q ss_pred CCCCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCC
Q 031078 75 PDGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLN 153 (166)
Q Consensus 75 ~~~~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~ 153 (166)
....+.++. .+.++|++.+. .+++++|+||++||++|+.+.|.++++++++.+ +.++++|++++ ++++++|+
T Consensus 31 ~~~~~~~i~-~~~~~~~~~i~----~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~ 103 (139)
T PRK10996 31 DLFDGEVIN-ATGETLDKLLQ----DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE--RELSARFR 103 (139)
T ss_pred ccCCCCCEE-cCHHHHHHHHh----CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC--HHHHHhcC
Confidence 334455555 46789998764 578999999999999999999999999998875 99999999998 89999999
Q ss_pred CCcceEEEEcC
Q 031078 154 ISAVVSSLSPS 164 (166)
Q Consensus 154 V~~vPTll~~d 164 (166)
|.++||+++++
T Consensus 104 V~~~Ptlii~~ 114 (139)
T PRK10996 104 IRSIPTIMIFK 114 (139)
T ss_pred CCccCEEEEEE
Confidence 99999999876
No 31
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.69 E-value=2.2e-16 Score=109.95 Aligned_cols=76 Identities=17% Similarity=0.373 Sum_probs=65.3
Q ss_pred CeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCCcchHHHHHhCCCCcc
Q 031078 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKGLESTLSKLNISAV 157 (166)
Q Consensus 80 ~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~~~~~l~~~~~V~~v 157 (166)
.++++ +.++|++.+. + .++|+|||+||++|+.+.|.++++++.+. ++.++++|++++ +.++++|+|.++
T Consensus 2 ~v~~l-~~~~f~~~~~-----~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~--~~~~~~~~i~~~ 72 (101)
T cd02994 2 NVVEL-TDSNWTLVLE-----G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE--PGLSGRFFVTAL 72 (101)
T ss_pred ceEEc-ChhhHHHHhC-----C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC--HhHHHHcCCccc
Confidence 35555 4789998763 2 27899999999999999999999998875 489999999987 899999999999
Q ss_pred eEEEEcC
Q 031078 158 VSSLSPS 164 (166)
Q Consensus 158 PTll~~d 164 (166)
||+++++
T Consensus 73 Pt~~~~~ 79 (101)
T cd02994 73 PTIYHAK 79 (101)
T ss_pred CEEEEeC
Confidence 9999864
No 32
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.2e-16 Score=130.46 Aligned_cols=80 Identities=20% Similarity=0.455 Sum_probs=70.9
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceE
Q 031078 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVS 159 (166)
Q Consensus 81 v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPT 159 (166)
+..+ |..+|++.+.+ ....+||+|+||++||++|+.+.|.+++++.+|.| +++++||+|++ +.++..|||+++||
T Consensus 25 I~dv-T~anfe~~V~~-~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~--p~vAaqfgiqsIPt 100 (304)
T COG3118 25 IKDV-TEANFEQEVIQ-SSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE--PMVAAQFGVQSIPT 100 (304)
T ss_pred ceec-hHhHHHHHHHH-HccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc--hhHHHHhCcCcCCe
Confidence 4455 46999988764 34556999999999999999999999999999998 99999999999 99999999999999
Q ss_pred EEEcC
Q 031078 160 SLSPS 164 (166)
Q Consensus 160 ll~~d 164 (166)
++.++
T Consensus 101 V~af~ 105 (304)
T COG3118 101 VYAFK 105 (304)
T ss_pred EEEee
Confidence 88764
No 33
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.69 E-value=2.4e-16 Score=113.13 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=66.7
Q ss_pred cCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC---C-cEEEEEECCCcchHHHHHhCCCCcceEE
Q 031078 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP---H-VTTYKIDIDQKGLESTLSKLNISAVVSS 160 (166)
Q Consensus 85 ~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~---~-v~~~~vDid~~~~~~l~~~~~V~~vPTl 160 (166)
.+.++|++.+.. .+++++|+||++||++|+.+.|.|+++++++. + +.|+++|++.+.+..++++|+|+++||+
T Consensus 6 l~~~~f~~~i~~---~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~ 82 (114)
T cd02992 6 LDAASFNSALLG---SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTL 82 (114)
T ss_pred CCHHhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEE
Confidence 357899998763 55899999999999999999999999998764 3 8999999876444789999999999999
Q ss_pred EEcCC
Q 031078 161 LSPSF 165 (166)
Q Consensus 161 l~~d~ 165 (166)
++++.
T Consensus 83 ~lf~~ 87 (114)
T cd02992 83 RYFPP 87 (114)
T ss_pred EEECC
Confidence 99863
No 34
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.68 E-value=4.1e-16 Score=110.64 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=65.6
Q ss_pred cCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC--cEEEEEECCCcchHHHHH-hCCCCcceEEE
Q 031078 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQKGLESTLS-KLNISAVVSSL 161 (166)
Q Consensus 85 ~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~~~~vDid~~~~~~l~~-~~~V~~vPTll 161 (166)
.+.++|+.++.. .+.+++++|.||++||++|+.+.|.++++++++.+ +.+++||+|.++ ..+++ .|+|.++||++
T Consensus 6 ~~~~~~~~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~-~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 6 LSRAEIEALAKG-ERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ-REFAKEELQLKSFPTIL 83 (109)
T ss_pred ccHHHHHHHHhh-hhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc-hhhHHhhcCCCcCCEEE
Confidence 345799988752 45678999999999999999999999999998864 899999999832 56676 59999999999
Q ss_pred EcC
Q 031078 162 SPS 164 (166)
Q Consensus 162 ~~d 164 (166)
+++
T Consensus 84 ~f~ 86 (109)
T cd02993 84 FFP 86 (109)
T ss_pred EEc
Confidence 875
No 35
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.68 E-value=3.8e-16 Score=108.29 Aligned_cols=72 Identities=24% Similarity=0.443 Sum_probs=63.7
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC----CcEEEEEECCCcchHHHHHhCCCCcceEEE
Q 031078 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQKGLESTLSKLNISAVVSSL 161 (166)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~~~~vDid~~~~~~l~~~~~V~~vPTll 161 (166)
+.++|++.+. ++ .++|+||++||++|+.+.|.++++++++. ++.++++|++.+ ..++++|+|.++||++
T Consensus 6 ~~~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~ 78 (102)
T cd03005 6 TEDNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH--RELCSEFQVRGYPTLL 78 (102)
T ss_pred CHHHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC--hhhHhhcCCCcCCEEE
Confidence 5688999875 23 59999999999999999999999998874 489999999998 8999999999999999
Q ss_pred EcC
Q 031078 162 SPS 164 (166)
Q Consensus 162 ~~d 164 (166)
+++
T Consensus 79 ~~~ 81 (102)
T cd03005 79 LFK 81 (102)
T ss_pred EEe
Confidence 874
No 36
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.66 E-value=6e-16 Score=123.36 Aligned_cols=84 Identities=15% Similarity=0.294 Sum_probs=72.0
Q ss_pred CCCeEEecCHHHHHHHHhhhh-cCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCC
Q 031078 78 PSNILVIESGEEFNSSLGKVK-DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNIS 155 (166)
Q Consensus 78 ~~~v~~i~s~~~f~~~l~~~~-~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~ 155 (166)
...++++ +.++|++.+.... ..+++++|+||++||++|+.+.|.++++++++++ +.++++|++++ ++++++|+|.
T Consensus 29 ~~~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~--~~l~~~~~I~ 105 (224)
T PTZ00443 29 ANALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA--LNLAKRFAIK 105 (224)
T ss_pred CCCcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc--HHHHHHcCCC
Confidence 3455555 5789999875321 2357999999999999999999999999999987 89999999998 8999999999
Q ss_pred cceEEEEcC
Q 031078 156 AVVSSLSPS 164 (166)
Q Consensus 156 ~vPTll~~d 164 (166)
++||+++++
T Consensus 106 ~~PTl~~f~ 114 (224)
T PTZ00443 106 GYPTLLLFD 114 (224)
T ss_pred cCCEEEEEE
Confidence 999999886
No 37
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.66 E-value=5.9e-16 Score=112.25 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=69.9
Q ss_pred EecCHHHHHHHHhhhhcCCCcEEEEEEc-------CCChhHHhHhHHHHHHHHhCC-CcEEEEEECCCcc-----hHHHH
Q 031078 83 VIESGEEFNSSLGKVKDDSLPAIFYFTA-------AWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQKG-----LESTL 149 (166)
Q Consensus 83 ~i~s~~~f~~~l~~~~~~~k~vvV~F~a-------~WC~~Ck~~~p~l~~la~~~~-~v~~~~vDid~~~-----~~~l~ 149 (166)
.+.+.++|++.+.. .++++++|+||| +||++|+.+.|.+++++++++ +++|++||+++.. +..++
T Consensus 5 ~~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~ 82 (119)
T cd02952 5 AVRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR 82 (119)
T ss_pred cccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH
Confidence 45678889888864 356899999999 999999999999999999999 5999999998731 36889
Q ss_pred HhCCCC-cceEEEEcCC
Q 031078 150 SKLNIS-AVVSSLSPSF 165 (166)
Q Consensus 150 ~~~~V~-~vPTll~~d~ 165 (166)
.+|+|. ++||+++++.
T Consensus 83 ~~~~I~~~iPT~~~~~~ 99 (119)
T cd02952 83 TDPKLTTGVPTLLRWKT 99 (119)
T ss_pred hccCcccCCCEEEEEcC
Confidence 999998 9999999863
No 38
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.65 E-value=1.1e-15 Score=105.12 Aligned_cols=74 Identities=27% Similarity=0.585 Sum_probs=66.3
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
+.++|++.+.. .+++++|+||++||++|+.+.+.++++++++++ +.|+++|++++ ..++++|+|.++|++++++
T Consensus 2 ~~~~~~~~~~~---~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~P~~~~~~ 76 (101)
T TIGR01068 2 TDANFDETIAS---SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN--PDIAAKYGIRSIPTLLLFK 76 (101)
T ss_pred CHHHHHHHHhh---cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC--HHHHHHcCCCcCCEEEEEe
Confidence 45788888753 567999999999999999999999999988875 99999999998 8899999999999999875
No 39
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.65 E-value=7.6e-16 Score=110.40 Aligned_cols=64 Identities=14% Similarity=0.261 Sum_probs=59.2
Q ss_pred cCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 99 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
..++.++|+||++||++|+.+.|.+++++++++++.++++|+|++ ++++++|+|.++||+++++
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~--~~l~~~~~v~~vPt~~i~~ 83 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDED--KEKAEKYGVERVPTTIFLQ 83 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcC--HHHHHHcCCCcCCEEEEEe
Confidence 356678999999999999999999999999887799999999987 8999999999999999985
No 40
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.65 E-value=4.8e-16 Score=109.16 Aligned_cols=72 Identities=24% Similarity=0.324 Sum_probs=62.0
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC----CcEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 87 ~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
.++|++. . .+++++|+||++||++|+.+.|.++++++++. ++.++++|++.. ..++++|+|.++||+++
T Consensus 6 ~~~~~~~----~-~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~I~~~Pt~~l 78 (104)
T cd03000 6 DDSFKDV----R-KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY--SSIASEFGVRGYPTIKL 78 (104)
T ss_pred hhhhhhh----c-cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC--HhHHhhcCCccccEEEE
Confidence 3667763 2 35699999999999999999999999998873 388999999987 89999999999999999
Q ss_pred cCC
Q 031078 163 PSF 165 (166)
Q Consensus 163 ~d~ 165 (166)
+++
T Consensus 79 ~~~ 81 (104)
T cd03000 79 LKG 81 (104)
T ss_pred EcC
Confidence 864
No 41
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.65 E-value=1.4e-15 Score=105.56 Aligned_cols=79 Identities=16% Similarity=0.278 Sum_probs=66.7
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC--C-cEEEEEECCCcchHHHHHhCCCCcce
Q 031078 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--H-VTTYKIDIDQKGLESTLSKLNISAVV 158 (166)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~-v~~~~vDid~~~~~~l~~~~~V~~vP 158 (166)
.++ +.++|++.+. ++++++|+||++||++|+.+.|.++++++.+. + +.++++|++......++++|+|+++|
T Consensus 3 ~~l-~~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P 77 (104)
T cd02997 3 VHL-TDEDFRKFLK----KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFP 77 (104)
T ss_pred EEe-chHhHHHHHh----hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcccc
Confidence 344 4578988875 45699999999999999999999999998875 3 88999999984348999999999999
Q ss_pred EEEEcCC
Q 031078 159 SSLSPSF 165 (166)
Q Consensus 159 Tll~~d~ 165 (166)
|+++++.
T Consensus 78 t~~~~~~ 84 (104)
T cd02997 78 TFKYFEN 84 (104)
T ss_pred EEEEEeC
Confidence 9988763
No 42
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.65 E-value=7.1e-16 Score=108.10 Aligned_cols=73 Identities=22% Similarity=0.369 Sum_probs=62.2
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHH---HHHHHhCC-CcEEEEEECCCcc--hHHHHHhCCCCcceEEE
Q 031078 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHP-HVTTYKIDIDQKG--LESTLSKLNISAVVSSL 161 (166)
Q Consensus 88 ~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l---~~la~~~~-~v~~~~vDid~~~--~~~l~~~~~V~~vPTll 161 (166)
++|++++. .+++++|+||++||++|+.+.+.+ +++.+.+. ++.++++|+++++ ...++++|+|.++||++
T Consensus 2 ~~~~~~~~----~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 2 AALAQALA----QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred HHHHHHHH----cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 45666654 678999999999999999999988 67887777 5999999998742 37899999999999999
Q ss_pred EcC
Q 031078 162 SPS 164 (166)
Q Consensus 162 ~~d 164 (166)
+++
T Consensus 78 ~~~ 80 (104)
T cd02953 78 FYG 80 (104)
T ss_pred EEC
Confidence 987
No 43
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.64 E-value=1.3e-15 Score=105.08 Aligned_cols=73 Identities=19% Similarity=0.354 Sum_probs=65.9
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC---cEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH---VTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~---v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
+.++|++.+. ++++++|+||++||++|+.+.+.++++++.+.+ +.++.+|++++ ..++++|+|.++|++++
T Consensus 2 ~~~~~~~~~~----~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 2 TASNFDDIVL----SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE--KDLASRFGVSGFPTIKF 75 (102)
T ss_pred chhhHHHHhc----cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch--HHHHHhCCCCcCCEEEE
Confidence 4678888864 578999999999999999999999999988873 99999999998 89999999999999988
Q ss_pred cC
Q 031078 163 PS 164 (166)
Q Consensus 163 ~d 164 (166)
++
T Consensus 76 ~~ 77 (102)
T TIGR01126 76 FP 77 (102)
T ss_pred ec
Confidence 75
No 44
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.64 E-value=1.6e-15 Score=105.20 Aligned_cols=75 Identities=24% Similarity=0.417 Sum_probs=65.2
Q ss_pred ecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC---cEEEEEECCCcchHHHHHhCCCCcceEE
Q 031078 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH---VTTYKIDIDQKGLESTLSKLNISAVVSS 160 (166)
Q Consensus 84 i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~---v~~~~vDid~~~~~~l~~~~~V~~vPTl 160 (166)
..+.++|++.+.. .+++++|+||++||++|+.+.|.++++++.+.+ +.++++|++++ +++..+++.++||+
T Consensus 4 ~l~~~~f~~~i~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~~~~Pt~ 77 (104)
T cd02995 4 VVVGKNFDEVVLD---SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN---DVPSEFVVDGFPTI 77 (104)
T ss_pred EEchhhhHHHHhC---CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch---hhhhhccCCCCCEE
Confidence 3446799998763 568999999999999999999999999998764 89999999985 57889999999999
Q ss_pred EEcC
Q 031078 161 LSPS 164 (166)
Q Consensus 161 l~~d 164 (166)
++++
T Consensus 78 ~~~~ 81 (104)
T cd02995 78 LFFP 81 (104)
T ss_pred EEEc
Confidence 9875
No 45
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.63 E-value=2e-15 Score=104.72 Aligned_cols=74 Identities=27% Similarity=0.470 Sum_probs=65.8
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC---CcEEEEEECCC-cchHHHHHhCCCCcceEEE
Q 031078 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP---HVTTYKIDIDQ-KGLESTLSKLNISAVVSSL 161 (166)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~---~v~~~~vDid~-~~~~~l~~~~~V~~vPTll 161 (166)
+.++|++.+. +.+++++|+||++||++|+.+.|.++++++.+. ++.++++|++. . .+++++|+|.++|+++
T Consensus 6 ~~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 6 TDSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN--KDLAKKYGVSGFPTLK 80 (105)
T ss_pred chhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc--hhhHHhCCCCCcCEEE
Confidence 4588888764 356799999999999999999999999999875 39999999999 6 8999999999999999
Q ss_pred EcC
Q 031078 162 SPS 164 (166)
Q Consensus 162 ~~d 164 (166)
+++
T Consensus 81 ~~~ 83 (105)
T cd02998 81 FFP 83 (105)
T ss_pred EEe
Confidence 875
No 46
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.62 E-value=4.6e-15 Score=101.11 Aligned_cols=74 Identities=22% Similarity=0.363 Sum_probs=65.8
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhC---CCcEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH---PHVTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~---~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
+.++|++.+. ++++++|+||++||++|+.+.+.++++++.+ .++.|+.+|++++ ..++++|+|.++||+++
T Consensus 4 ~~~~~~~~i~----~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 4 TDDNFDELVK----DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN--NDLCSEYGVRGYPTIKL 77 (101)
T ss_pred cHHHHHHHHh----CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch--HHHHHhCCCCCCCEEEE
Confidence 4578888876 4459999999999999999999999999988 3499999999997 89999999999999998
Q ss_pred cCC
Q 031078 163 PSF 165 (166)
Q Consensus 163 ~d~ 165 (166)
++.
T Consensus 78 ~~~ 80 (101)
T cd02961 78 FPN 80 (101)
T ss_pred EcC
Confidence 863
No 47
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.62 E-value=4.2e-15 Score=103.18 Aligned_cols=70 Identities=17% Similarity=0.334 Sum_probs=62.8
Q ss_pred HHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 90 FNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 90 f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
++..+. +.+++++++||++||+.|+.+.+.++++++++++ +.++++|+|+. ++++++++|.++|++++++
T Consensus 5 ~~~~~~---~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~--~~l~~~~~v~~vPt~~i~~ 75 (97)
T cd02949 5 LRKLYH---ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED--QEIAEAAGIMGTPTVQFFK 75 (97)
T ss_pred HHHHHH---hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC--HHHHHHCCCeeccEEEEEE
Confidence 455554 3788999999999999999999999999999875 99999999987 8999999999999999886
No 48
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.60 E-value=4.2e-15 Score=116.03 Aligned_cols=82 Identities=12% Similarity=0.099 Sum_probs=68.7
Q ss_pred CCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCc
Q 031078 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISA 156 (166)
Q Consensus 77 ~~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~ 156 (166)
.-+.+..++ .++|...+... ..++++||+||++||++|+.+.+.|++|+++|++++|++||++.. ..+|+|.+
T Consensus 80 ~~G~v~eis-~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-----~~~~~i~~ 152 (192)
T cd02988 80 KFGEVYEIS-KPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC-----IPNYPDKN 152 (192)
T ss_pred CCCeEEEeC-HHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-----HhhCCCCC
Confidence 446777774 57888776531 234689999999999999999999999999999999999999863 58999999
Q ss_pred ceEEEEcCC
Q 031078 157 VVSSLSPSF 165 (166)
Q Consensus 157 vPTll~~d~ 165 (166)
+||+++++.
T Consensus 153 lPTlliyk~ 161 (192)
T cd02988 153 LPTILVYRN 161 (192)
T ss_pred CCEEEEEEC
Confidence 999999863
No 49
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.59 E-value=8.3e-15 Score=127.38 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=68.8
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC--cEEEEEECCCcchHHHHHhCCCCcce
Q 031078 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQKGLESTLSKLNISAVV 158 (166)
Q Consensus 81 v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~~~~vDid~~~~~~l~~~~~V~~vP 158 (166)
.+...+.++|++.+. ..+.++++||+|||+||++|+.+.|.|+++++++.+ ++|++||+|.+.....+++|+|.++|
T Consensus 352 ~Vv~L~~~nf~~~v~-~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P 430 (463)
T TIGR00424 352 NVVSLSRPGIENLLK-LEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 430 (463)
T ss_pred CeEECCHHHHHHHHh-hhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence 344456689999885 245778999999999999999999999999999864 89999999976323345799999999
Q ss_pred EEEEcC
Q 031078 159 SSLSPS 164 (166)
Q Consensus 159 Tll~~d 164 (166)
|+++++
T Consensus 431 Tii~Fk 436 (463)
T TIGR00424 431 TILFFP 436 (463)
T ss_pred eEEEEE
Confidence 999885
No 50
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.58 E-value=6.7e-15 Score=106.43 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=56.8
Q ss_pred hhcCC-CcEEEEEEcCCChhHHhHhHHHH---HHHHhCC-CcEEEEEECCCc-----------chHHHHHhCCCCcceEE
Q 031078 97 VKDDS-LPAIFYFTAAWCGPCKFIWPVIG---ELSAKHP-HVTTYKIDIDQK-----------GLESTLSKLNISAVVSS 160 (166)
Q Consensus 97 ~~~~~-k~vvV~F~a~WC~~Ck~~~p~l~---~la~~~~-~v~~~~vDid~~-----------~~~~l~~~~~V~~vPTl 160 (166)
+++++ ++++|+||++||++|+.+.+.+. ++.+.+. ++.++++|++.. ...+++.+|+|.++||+
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~ 88 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTV 88 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence 44577 99999999999999999999874 5655554 488999999864 13688999999999999
Q ss_pred EEcCC
Q 031078 161 LSPSF 165 (166)
Q Consensus 161 l~~d~ 165 (166)
++++.
T Consensus 89 ~~~~~ 93 (125)
T cd02951 89 IFLDP 93 (125)
T ss_pred EEEcC
Confidence 99873
No 51
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.57 E-value=6.3e-15 Score=106.37 Aligned_cols=75 Identities=16% Similarity=0.367 Sum_probs=60.8
Q ss_pred HHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC-CcEEEEEECCCcchHHHHHhCCCCc--ceEEEEcC
Q 031078 89 EFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQKGLESTLSKLNISA--VVSSLSPS 164 (166)
Q Consensus 89 ~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~-~v~~~~vDid~~~~~~l~~~~~V~~--vPTll~~d 164 (166)
+|++.++.++.++++++|+|||+||++|+.+.|.+.+..+.+. +..|+.+|+|.+. ......|++.+ +||+++++
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~ 84 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLD 84 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC-CchhhhcccCCCccceEEEEC
Confidence 5788888888899999999999999999999999988766442 3567777777652 23457899986 99999986
No 52
>PLN02309 5'-adenylylsulfate reductase
Probab=99.55 E-value=2.6e-14 Score=124.17 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=69.1
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC--cEEEEEECC-CcchHHHHH-hCCCCc
Q 031078 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDID-QKGLESTLS-KLNISA 156 (166)
Q Consensus 81 v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~~~~vDid-~~~~~~l~~-~~~V~~ 156 (166)
.+...+.++|++.+.. .+.++.+||+||++||++|+.|.|.|+++++++.+ ++|+++|+| .+ ..+++ +|+|.+
T Consensus 346 ~Vv~Lt~~nfe~ll~~-~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~--~~la~~~~~I~~ 422 (457)
T PLN02309 346 NVVALSRAGIENLLKL-ENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQ--KEFAKQELQLGS 422 (457)
T ss_pred CcEECCHHHHHHHHHh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcc--hHHHHhhCCCce
Confidence 3444567899998752 45788999999999999999999999999999863 999999999 54 67776 699999
Q ss_pred ceEEEEcC
Q 031078 157 VVSSLSPS 164 (166)
Q Consensus 157 vPTll~~d 164 (166)
+||+++++
T Consensus 423 ~PTil~f~ 430 (457)
T PLN02309 423 FPTILLFP 430 (457)
T ss_pred eeEEEEEe
Confidence 99999984
No 53
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.55 E-value=2.9e-14 Score=127.28 Aligned_cols=87 Identities=17% Similarity=0.257 Sum_probs=76.9
Q ss_pred CCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHH---HHHHHhCCCcEEEEEECCCc--chHHHHHhC
Q 031078 78 PSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHPHVTTYKIDIDQK--GLESTLSKL 152 (166)
Q Consensus 78 ~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l---~~la~~~~~v~~~~vDid~~--~~~~l~~~~ 152 (166)
......+.+.+++++.++++++++|+++|+|||+||++|+.+++.+ +++.++++++.++++|++++ +..+++++|
T Consensus 451 ~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 451 HLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred CCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHc
Confidence 3467788999999999988888899999999999999999999875 77888888899999999865 246889999
Q ss_pred CCCcceEEEEcC
Q 031078 153 NISAVVSSLSPS 164 (166)
Q Consensus 153 ~V~~vPTll~~d 164 (166)
+|.++||++++|
T Consensus 531 ~v~g~Pt~~~~~ 542 (571)
T PRK00293 531 NVLGLPTILFFD 542 (571)
T ss_pred CCCCCCEEEEEC
Confidence 999999999986
No 54
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.54 E-value=4.8e-14 Score=102.53 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=61.0
Q ss_pred cCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc---------hHHHHHhCC--
Q 031078 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG---------LESTLSKLN-- 153 (166)
Q Consensus 85 ~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~---------~~~l~~~~~-- 153 (166)
.+.++|.+.+. +++.++|+||++||++|+.+.|.+++++++ .++.++.||+|.+. ..++.++|+
T Consensus 11 it~~~~~~~i~----~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 11 TTVVRALEALD----KKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred cCHHHHHHHHH----cCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 45678888875 577899999999999999999999999998 45789999998541 235567765
Q ss_pred --CCcceEEEEcCC
Q 031078 154 --ISAVVSSLSPSF 165 (166)
Q Consensus 154 --V~~vPTll~~d~ 165 (166)
|.++||+++++.
T Consensus 86 ~~i~~~PT~v~~k~ 99 (122)
T TIGR01295 86 TSFMGTPTFVHITD 99 (122)
T ss_pred ccCCCCCEEEEEeC
Confidence 556999998763
No 55
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.54 E-value=4.4e-14 Score=94.36 Aligned_cols=70 Identities=31% Similarity=0.613 Sum_probs=62.6
Q ss_pred HHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 89 EFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 89 ~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
+|++.+. .+++++|+||++||+.|+.+.+.++++.+..+++.++.+|++.. .+++++|++.++|++++++
T Consensus 2 ~~~~~~~----~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v~~~P~~~~~~ 71 (93)
T cd02947 2 EFEELIK----SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN--PELAEEYGVRSIPTFLFFK 71 (93)
T ss_pred chHHHHh----cCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC--hhHHHhcCcccccEEEEEE
Confidence 5666655 34899999999999999999999999998877899999999997 8999999999999999875
No 56
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.49 E-value=1.3e-13 Score=89.27 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=54.2
Q ss_pred EEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 104 vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
-|..||++||++|+.+.+.++++++.++++.+..+|++++ ++++++|++.++||+++-+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~--~~l~~~~~i~~vPti~i~~ 60 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF--PDLADEYGVMSVPAIVING 60 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC--HhHHHHcCCcccCEEEECC
Confidence 3778999999999999999999998888899999999987 8899999999999998744
No 57
>PTZ00102 disulphide isomerase; Provisional
Probab=99.48 E-value=1e-13 Score=120.11 Aligned_cols=79 Identities=24% Similarity=0.379 Sum_probs=68.3
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC---cEEEEEECCCcchHHHHHhCCCCcc
Q 031078 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH---VTTYKIDIDQKGLESTLSKLNISAV 157 (166)
Q Consensus 81 v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~---v~~~~vDid~~~~~~l~~~~~V~~v 157 (166)
.+...+.++|++.+. +.+++++|+|||+||++|+.+.|.++++++.+.+ +.++++|++.+ ...+++|+|+++
T Consensus 358 ~v~~l~~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~--~~~~~~~~v~~~ 432 (477)
T PTZ00102 358 PVKVVVGNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN--ETPLEEFSWSAF 432 (477)
T ss_pred CeEEecccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC--ccchhcCCCccc
Confidence 344445799998864 3778999999999999999999999999988753 88999999987 677899999999
Q ss_pred eEEEEcC
Q 031078 158 VSSLSPS 164 (166)
Q Consensus 158 PTll~~d 164 (166)
||+++++
T Consensus 433 Pt~~~~~ 439 (477)
T PTZ00102 433 PTILFVK 439 (477)
T ss_pred CeEEEEE
Confidence 9999886
No 58
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.48 E-value=1.4e-13 Score=91.85 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=52.6
Q ss_pred EEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 104 vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
.|..||++||++|+.+.+.++++++++++ +.+++||++++ ++++++|++.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~vPt~~~ 59 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN--PQKAMEYGIMAVPAIVI 59 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC--HHHHHHcCCccCCEEEE
Confidence 36789999999999999999999999865 99999999987 89999999999999987
No 59
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=5.2e-14 Score=122.45 Aligned_cols=80 Identities=18% Similarity=0.315 Sum_probs=69.6
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC----CcEEEEEECCCcchHHHHHhCCC
Q 031078 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQKGLESTLSKLNI 154 (166)
Q Consensus 79 ~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~~~~vDid~~~~~~l~~~~~V 154 (166)
...+.+.+.++|++.+. .+..++|.|||+|||+|+.+.|.+++.++... .+++++||+.++ .++|.+|+|
T Consensus 24 ~~~Vl~Lt~dnf~~~i~----~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~--~~~~~~y~v 97 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETIN----GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE--SDLASKYEV 97 (493)
T ss_pred ccceEEEecccHHHHhc----cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh--hhhHhhhcC
Confidence 44455555699999986 56799999999999999999999999988764 499999999998 899999999
Q ss_pred CcceEEEEcC
Q 031078 155 SAVVSSLSPS 164 (166)
Q Consensus 155 ~~vPTll~~d 164 (166)
+++||+.++.
T Consensus 98 ~gyPTlkiFr 107 (493)
T KOG0190|consen 98 RGYPTLKIFR 107 (493)
T ss_pred CCCCeEEEEe
Confidence 9999998764
No 60
>PTZ00062 glutaredoxin; Provisional
Probab=99.48 E-value=1.5e-13 Score=108.23 Aligned_cols=67 Identities=10% Similarity=0.052 Sum_probs=60.1
Q ss_pred cCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 85 ~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
.+.++|++.++. +.+.+|++|||+||++|+.|.+++++|+++|++++|++||.| |+|.++|||++++
T Consensus 4 ~~~ee~~~~i~~---~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~ 70 (204)
T PTZ00062 4 IKKEEKDKLIES---NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQ 70 (204)
T ss_pred CCHHHHHHHHhc---CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc----------cCcccceEEEEEE
Confidence 467888888752 336899999999999999999999999999999999999977 9999999999975
No 61
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.2e-13 Score=120.21 Aligned_cols=78 Identities=24% Similarity=0.446 Sum_probs=66.4
Q ss_pred CeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC---cEEEEEECCCcchHHHHHhCCCCc
Q 031078 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH---VTTYKIDIDQKGLESTLSKLNISA 156 (166)
Q Consensus 80 ~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~---v~~~~vDid~~~~~~l~~~~~V~~ 156 (166)
..+.+...++|++++. +.+|-++|.|||+|||||+++.|+|++|++.|.+ +.+.++|.+.++.+ ..+|.+
T Consensus 366 ~pVkvvVgknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~----~~~~~~ 438 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVP----SLKVDG 438 (493)
T ss_pred CCeEEEeecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCc----cccccc
Confidence 4466666799999964 5889999999999999999999999999999864 99999999998533 567788
Q ss_pred ceEEEEcC
Q 031078 157 VVSSLSPS 164 (166)
Q Consensus 157 vPTll~~d 164 (166)
+||++++.
T Consensus 439 fPTI~~~p 446 (493)
T KOG0190|consen 439 FPTILFFP 446 (493)
T ss_pred cceEEEec
Confidence 99999864
No 62
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.45 E-value=3.5e-13 Score=115.62 Aligned_cols=75 Identities=17% Similarity=0.312 Sum_probs=66.2
Q ss_pred ecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC----CcEEEEEECCCcchHHHHHhCCCCcceE
Q 031078 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQKGLESTLSKLNISAVVS 159 (166)
Q Consensus 84 i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~~~~vDid~~~~~~l~~~~~V~~vPT 159 (166)
..+.++|++++. +++.++|+|||+||++|+.+.|.++++++.+. ++.|++||++++ .+++++|+|.++||
T Consensus 5 ~l~~~~~~~~i~----~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt 78 (462)
T TIGR01130 5 VLTKDNFDDFIK----SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE--KDLAQKYGVSGYPT 78 (462)
T ss_pred ECCHHHHHHHHh----cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc--HHHHHhCCCccccE
Confidence 346789999875 46799999999999999999999999887653 389999999998 89999999999999
Q ss_pred EEEcC
Q 031078 160 SLSPS 164 (166)
Q Consensus 160 ll~~d 164 (166)
+++++
T Consensus 79 ~~~~~ 83 (462)
T TIGR01130 79 LKIFR 83 (462)
T ss_pred EEEEe
Confidence 98876
No 63
>PTZ00102 disulphide isomerase; Provisional
Probab=99.44 E-value=5.3e-13 Score=115.71 Aligned_cols=78 Identities=13% Similarity=0.263 Sum_probs=67.0
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhC----CCcEEEEEECCCcchHHHHHhCCCCcc
Q 031078 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH----PHVTTYKIDIDQKGLESTLSKLNISAV 157 (166)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~----~~v~~~~vDid~~~~~~l~~~~~V~~v 157 (166)
+...+.++|++.+. +++.++|+|||+||++|+.+.|.++++++.+ .++.+++||++.+ .+++++|+|.++
T Consensus 34 v~~l~~~~f~~~i~----~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~--~~l~~~~~i~~~ 107 (477)
T PTZ00102 34 VTVLTDSTFDKFIT----ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE--MELAQEFGVRGY 107 (477)
T ss_pred cEEcchhhHHHHHh----cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC--HHHHHhcCCCcc
Confidence 34446789999875 4579999999999999999999999988655 3499999999998 899999999999
Q ss_pred eEEEEcCC
Q 031078 158 VSSLSPSF 165 (166)
Q Consensus 158 PTll~~d~ 165 (166)
||+++++.
T Consensus 108 Pt~~~~~~ 115 (477)
T PTZ00102 108 PTIKFFNK 115 (477)
T ss_pred cEEEEEEC
Confidence 99988763
No 64
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.42 E-value=5.3e-13 Score=92.75 Aligned_cols=63 Identities=11% Similarity=0.065 Sum_probs=59.2
Q ss_pred CCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCC--cceEEEEcCC
Q 031078 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNIS--AVVSSLSPSF 165 (166)
Q Consensus 101 ~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~--~vPTll~~d~ 165 (166)
++++++.||++||++|+.+.+.+++++++|.+ +.|+++|+++. ..+++.|+|. ++|++++++.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~--~~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDF--GRHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh--HHHHHHcCCChhhCCEEEEEec
Confidence 57999999999999999999999999999976 99999999997 8999999999 9999998763
No 65
>PHA02125 thioredoxin-like protein
Probab=99.42 E-value=5.4e-13 Score=88.78 Aligned_cols=51 Identities=25% Similarity=0.600 Sum_probs=45.4
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
+++||++||++|+.+.|.++++. +.+++||.|+. .+++++|+|.++||++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~--~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEG--VELTAKHHIRSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCC--HHHHHHcCCceeCeEEC
Confidence 78999999999999999998763 46888888887 89999999999999983
No 66
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.41 E-value=8.5e-13 Score=96.34 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=54.2
Q ss_pred HhhhhcCCCcEEEEEEcCCChhHHhHhHHH---HHHHHhC-CCcEEEEEECCCcchHHHHH--------hCCCCcceEEE
Q 031078 94 LGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKH-PHVTTYKIDIDQKGLESTLS--------KLNISAVVSSL 161 (166)
Q Consensus 94 l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l---~~la~~~-~~v~~~~vDid~~~~~~l~~--------~~~V~~vPTll 161 (166)
++.+++++|+++|+||++||+.|+.|.+.. .++.+.. .++.++++|+++. +++++ .|++.++|+++
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~--~~~~~~~~~~~~~~~~~~G~Pt~v 85 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREER--PDVDKIYMNAAQAMTGQGGWPLNV 85 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcC--cHHHHHHHHHHHHhcCCCCCCEEE
Confidence 344556889999999999999999998743 4666553 4689999999886 45443 46999999999
Q ss_pred EcC
Q 031078 162 SPS 164 (166)
Q Consensus 162 ~~d 164 (166)
+++
T Consensus 86 fl~ 88 (124)
T cd02955 86 FLT 88 (124)
T ss_pred EEC
Confidence 986
No 67
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.41 E-value=1e-12 Score=90.21 Aligned_cols=64 Identities=28% Similarity=0.501 Sum_probs=54.1
Q ss_pred CCcEEEEEEcCCChhHHhHhHHHHHHHHhCC---CcEEEEEECCCcc-----------------------hHHHHHhCCC
Q 031078 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHP---HVTTYKIDIDQKG-----------------------LESTLSKLNI 154 (166)
Q Consensus 101 ~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~---~v~~~~vDid~~~-----------------------~~~l~~~~~V 154 (166)
||+++|+||++||++|+...|.+.++.++|+ ++.++.|..|+.. ...+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5799999999999999999999999999998 5999999888640 2568899999
Q ss_pred CcceEEEEcC
Q 031078 155 SAVVSSLSPS 164 (166)
Q Consensus 155 ~~vPTll~~d 164 (166)
.++|+++++|
T Consensus 81 ~~iP~~~lld 90 (95)
T PF13905_consen 81 NGIPTLVLLD 90 (95)
T ss_dssp TSSSEEEEEE
T ss_pred CcCCEEEEEC
Confidence 9999999987
No 68
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.39 E-value=2.9e-13 Score=111.15 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=62.7
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC----cEEEEEECCCcchHHHHHhCCCCcceEEEEc
Q 031078 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH----VTTYKIDIDQKGLESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 88 ~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~----v~~~~vDid~~~~~~l~~~~~V~~vPTll~~ 163 (166)
+++++.... .+++..++|.|||+||++||++.|+|+++.-++++ +++.++|+... +.++.+|+|+++||+.++
T Consensus 31 eDLddkFkd-nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f--~aiAnefgiqGYPTIk~~ 107 (468)
T KOG4277|consen 31 EDLDDKFKD-NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF--PAIANEFGIQGYPTIKFF 107 (468)
T ss_pred hhhhHHhhh-cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc--hhhHhhhccCCCceEEEe
Confidence 344444433 24557999999999999999999999999766653 89999999998 999999999999999998
Q ss_pred CC
Q 031078 164 SF 165 (166)
Q Consensus 164 d~ 165 (166)
++
T Consensus 108 kg 109 (468)
T KOG4277|consen 108 KG 109 (468)
T ss_pred cC
Confidence 75
No 69
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.39 E-value=1.6e-12 Score=97.47 Aligned_cols=66 Identities=9% Similarity=0.232 Sum_probs=54.4
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC---------CcEEEEEECCCcc-----------------------hHH
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP---------HVTTYKIDIDQKG-----------------------LES 147 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~---------~v~~~~vDid~~~-----------------------~~~ 147 (166)
.+|+++|+|||+||++|+.+.|.++++++++. ++.++.|+.|+.. ...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 57899999999999999999999999876432 4888888887531 025
Q ss_pred HHHhCCCCcceEEEEcCC
Q 031078 148 TLSKLNISAVVSSLSPSF 165 (166)
Q Consensus 148 l~~~~~V~~vPTll~~d~ 165 (166)
++.+|+|.++|+++++|.
T Consensus 104 l~~~y~v~~iPt~vlId~ 121 (146)
T cd03008 104 LEAQFSVEELPTVVVLKP 121 (146)
T ss_pred HHHHcCCCCCCEEEEECC
Confidence 788999999999999873
No 70
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.38 E-value=2.4e-12 Score=92.93 Aligned_cols=74 Identities=4% Similarity=-0.082 Sum_probs=61.0
Q ss_pred ecCHHHHHHHHhhhhcCCCcEEEEEEc--CCCh---hHHhHhHHHHHHHHhCCCcEEEEEECCCc---chHHHHHhCCCC
Q 031078 84 IESGEEFNSSLGKVKDDSLPAIFYFTA--AWCG---PCKFIWPVIGELSAKHPHVTTYKIDIDQK---GLESTLSKLNIS 155 (166)
Q Consensus 84 i~s~~~f~~~l~~~~~~~k~vvV~F~a--~WC~---~Ck~~~p~l~~la~~~~~v~~~~vDid~~---~~~~l~~~~~V~ 155 (166)
..+.++|++.+. .++.++|.||| +||+ +|+.+.|.+.+-+.+ +.+.+||+++. .+.+++++|+|+
T Consensus 5 ~L~~~nF~~~v~----~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~---v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 5 DLDTVTFYKVIP----KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD---LLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred ECChhhHHHHHh----cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc---eEEEEEecccccchhhHHHHHHhCCC
Confidence 356799999886 56789999999 9999 888888888776543 89999999642 137899999999
Q ss_pred --cceEEEEcC
Q 031078 156 --AVVSSLSPS 164 (166)
Q Consensus 156 --~vPTll~~d 164 (166)
++||++++.
T Consensus 78 ~~gyPTl~lF~ 88 (116)
T cd03007 78 KESYPVIYLFH 88 (116)
T ss_pred cCCCCEEEEEe
Confidence 999998875
No 71
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.37 E-value=2.1e-12 Score=86.27 Aligned_cols=54 Identities=7% Similarity=0.083 Sum_probs=46.4
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
.|.||++||++|+.+.|.+++++++++. +.++++| + .+.+.+|+|.++||+++ |
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~---~~~a~~~~v~~vPti~i-~ 56 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--D---MNEILEAGVTATPGVAV-D 56 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C---HHHHHHcCCCcCCEEEE-C
Confidence 3789999999999999999999999975 7777666 2 34578899999999998 5
No 72
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.36 E-value=2.7e-12 Score=93.28 Aligned_cols=65 Identities=20% Similarity=0.386 Sum_probs=54.1
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC----CcEEEEEECCCcc----------------------hHHHHHhCC
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQKG----------------------LESTLSKLN 153 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~~~~vDid~~~----------------------~~~l~~~~~ 153 (166)
.+++++|+||++||++|+.+.|.+.++.+++. ++.++.|++|... ...++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 46799999999999999999999998877653 5778888877541 135778999
Q ss_pred CCcceEEEEcC
Q 031078 154 ISAVVSSLSPS 164 (166)
Q Consensus 154 V~~vPTll~~d 164 (166)
|.++|+++++|
T Consensus 97 v~~~P~~~lid 107 (131)
T cd03009 97 IEGIPTLIILD 107 (131)
T ss_pred CCCCCEEEEEC
Confidence 99999999987
No 73
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.36 E-value=3e-12 Score=101.12 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=55.5
Q ss_pred cEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEcCC
Q 031078 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSPSF 165 (166)
Q Consensus 103 ~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d~ 165 (166)
..|+.||++||++|+.+.+.+++++.+++++.+.++|++++ ++++++|+|.++||+++.+.
T Consensus 135 v~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~--~~~~~~~~V~~vPtl~i~~~ 195 (215)
T TIGR02187 135 VRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN--PDLAEKYGVMSVPKIVINKG 195 (215)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC--HHHHHHhCCccCCEEEEecC
Confidence 45556999999999999999999999988899999999998 89999999999999999764
No 74
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.34 E-value=4.7e-12 Score=92.45 Aligned_cols=65 Identities=18% Similarity=0.386 Sum_probs=53.7
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC----CcEEEEEECCCcc-----------------------hHHHHHhC
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQKG-----------------------LESTLSKL 152 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~~~~vDid~~~-----------------------~~~l~~~~ 152 (166)
.+|.++|+||++||++|+.+.|.++++.+++. ++.++.|++|... ...+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 56899999999999999999999999987664 4778888777531 12456789
Q ss_pred CCCcceEEEEcC
Q 031078 153 NISAVVSSLSPS 164 (166)
Q Consensus 153 ~V~~vPTll~~d 164 (166)
+|.++|+++++|
T Consensus 96 ~v~~iPt~~lid 107 (132)
T cd02964 96 KVEGIPTLVVLK 107 (132)
T ss_pred CCCCCCEEEEEC
Confidence 999999999987
No 75
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.33 E-value=1.6e-12 Score=87.74 Aligned_cols=74 Identities=19% Similarity=0.455 Sum_probs=57.1
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHH---HHHHHh-CCCcEEEEEECCCcchHHHHHhCCCCcceEEEEc
Q 031078 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAK-HPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 88 ~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l---~~la~~-~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~ 163 (166)
.+|++.+.++++++|+++|+|+++||+.|+.+...+ +++.+. ..++.++++|.+..+ ... .+...++|+++++
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~-~~~--~~~~~~~P~~~~l 80 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDED-PNA--QFDRQGYPTFFFL 80 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHH-HHH--HHHHCSSSEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCC-hhH--HhCCccCCEEEEe
Confidence 468888888889999999999999999999999777 445442 245899999998863 222 2222669999998
Q ss_pred C
Q 031078 164 S 164 (166)
Q Consensus 164 d 164 (166)
|
T Consensus 81 d 81 (82)
T PF13899_consen 81 D 81 (82)
T ss_dssp E
T ss_pred C
Confidence 6
No 76
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.33 E-value=7.3e-12 Score=86.30 Aligned_cols=60 Identities=12% Similarity=0.146 Sum_probs=56.0
Q ss_pred CCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 101 ~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
+..-+..|+++||++|+...+.++++++.++++++..+|+++. ++++++|+|.++||+++
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~--~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF--QDEVEERGIMSVPAIFL 71 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC--HHHHHHcCCccCCEEEE
Confidence 3467888999999999999999999999999999999999987 89999999999999986
No 77
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.32 E-value=8.2e-12 Score=98.66 Aligned_cols=64 Identities=22% Similarity=0.228 Sum_probs=51.9
Q ss_pred CcEEEEEEc---CCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEcCC
Q 031078 102 LPAIFYFTA---AWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSPSF 165 (166)
Q Consensus 102 k~vvV~F~a---~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d~ 165 (166)
...++.|++ +||++|+.+.|.+++++++++++.+..+++|.+..++++++|+|.++||+++++.
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~ 86 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEE 86 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeC
Confidence 455777888 9999999999999999999987654455554322399999999999999999763
No 78
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.32 E-value=3.9e-12 Score=96.00 Aligned_cols=63 Identities=16% Similarity=0.321 Sum_probs=49.5
Q ss_pred CCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc----------hHHHH-HhC---CCCcceEEEEcC
Q 031078 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG----------LESTL-SKL---NISAVVSSLSPS 164 (166)
Q Consensus 101 ~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~----------~~~l~-~~~---~V~~vPTll~~d 164 (166)
++..+|+|||+||++|+.+.|.+++++++| ++.++.|++|... ..... ..| +|.++||++++|
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 356799999999999999999999999998 4677777776531 02233 345 889999999986
No 79
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.31 E-value=5.6e-12 Score=108.19 Aligned_cols=76 Identities=22% Similarity=0.420 Sum_probs=64.4
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC----cEEEEEECCCcchHHHHHhCCCCcc
Q 031078 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH----VTTYKIDIDQKGLESTLSKLNISAV 157 (166)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~----v~~~~vDid~~~~~~l~~~~~V~~v 157 (166)
+...+.++|++.+. +.++.++|+||++||++|+.+.|.++++++.+.+ +.|+++|++.++ +.. ++|.++
T Consensus 348 v~~l~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~---~~~-~~i~~~ 420 (462)
T TIGR01130 348 VKVLVGKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND---VPP-FEVEGF 420 (462)
T ss_pred cEEeeCcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc---cCC-CCcccc
Confidence 34455799999864 3678999999999999999999999999988764 899999999863 333 999999
Q ss_pred eEEEEcC
Q 031078 158 VSSLSPS 164 (166)
Q Consensus 158 PTll~~d 164 (166)
||+++++
T Consensus 421 Pt~~~~~ 427 (462)
T TIGR01130 421 PTIKFVP 427 (462)
T ss_pred CEEEEEe
Confidence 9999986
No 80
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.31 E-value=1.1e-11 Score=101.54 Aligned_cols=64 Identities=14% Similarity=0.296 Sum_probs=55.2
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc---------hHHHHHhCCCCcceEEEEcC
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG---------LESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~---------~~~l~~~~~V~~vPTll~~d 164 (166)
.++++||+||++||++|+.+.|.+++++++|+ +.++.|++|... ...++++|||.++||++++|
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~ 237 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLAD 237 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEE
Confidence 46799999999999999999999999999985 677777777531 25688999999999999987
No 81
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.28 E-value=1.7e-11 Score=88.54 Aligned_cols=64 Identities=22% Similarity=0.397 Sum_probs=52.0
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc---------------------chHHHHHhCCCCcce
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK---------------------GLESTLSKLNISAVV 158 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~---------------------~~~~l~~~~~V~~vP 158 (166)
.+++++|+||++||++|+.+.|.++++.+++ ++.++.|+.+.. ....+++.|++.++|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 4689999999999999999999999999887 477777774311 014678889999999
Q ss_pred EEEEcC
Q 031078 159 SSLSPS 164 (166)
Q Consensus 159 Tll~~d 164 (166)
+.+++|
T Consensus 103 ~~~~ld 108 (127)
T cd03010 103 ETFLID 108 (127)
T ss_pred eEEEEC
Confidence 877776
No 82
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.26 E-value=7.8e-12 Score=88.16 Aligned_cols=67 Identities=15% Similarity=0.274 Sum_probs=51.3
Q ss_pred hcCCCcEEEEEEcCCChhHHhHhHHHHH---HHHhCC-CcEEEEEECCCcc------------------hHHHHHhCCCC
Q 031078 98 KDDSLPAIFYFTAAWCGPCKFIWPVIGE---LSAKHP-HVTTYKIDIDQKG------------------LESTLSKLNIS 155 (166)
Q Consensus 98 ~~~~k~vvV~F~a~WC~~Ck~~~p~l~~---la~~~~-~v~~~~vDid~~~------------------~~~l~~~~~V~ 155 (166)
+.++++++++||++||++|+.+.+.+.+ +.+.+. ++.++.++++... ..+++++|+|.
T Consensus 2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 4578999999999999999999999875 444443 4888889987641 14689999999
Q ss_pred cceEEEEcC
Q 031078 156 AVVSSLSPS 164 (166)
Q Consensus 156 ~vPTll~~d 164 (166)
++||++++|
T Consensus 82 gtPt~~~~d 90 (112)
T PF13098_consen 82 GTPTIVFLD 90 (112)
T ss_dssp SSSEEEECT
T ss_pred ccCEEEEEc
Confidence 999999997
No 83
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.25 E-value=2.3e-11 Score=86.83 Aligned_cols=77 Identities=9% Similarity=0.021 Sum_probs=64.2
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHH-H--HHHHHhCC-CcEEEEEECCCcchHHHHHhCCCCcceEEEEc
Q 031078 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPV-I--GELSAKHP-HVTTYKIDIDQKGLESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 88 ~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~-l--~~la~~~~-~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~ 163 (166)
++|+++++.+++++|+++|+|+++||++|+.+... | +++.+.+. ++.++++|++..+..++++.|++.++|+++++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence 56888888888999999999999999999999764 3 44444443 47888999987556889999999999999998
Q ss_pred C
Q 031078 164 S 164 (166)
Q Consensus 164 d 164 (166)
+
T Consensus 84 ~ 84 (114)
T cd02958 84 D 84 (114)
T ss_pred e
Confidence 6
No 84
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.23 E-value=2.3e-11 Score=89.36 Aligned_cols=79 Identities=11% Similarity=0.059 Sum_probs=57.6
Q ss_pred EecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHH---HHHHHhCC-CcEEEEEECCCcchHHHHHhCCCCcce
Q 031078 83 VIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHP-HVTTYKIDIDQKGLESTLSKLNISAVV 158 (166)
Q Consensus 83 ~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l---~~la~~~~-~v~~~~vDid~~~~~~l~~~~~V~~vP 158 (166)
.|....+|++.++.+++++|+++|+||++||++|+.|...+ .++.+... ++..+.+|.|..+ ... ...+ .++|
T Consensus 5 ~i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td-~~~-~~~g-~~vP 81 (130)
T cd02960 5 DIIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTD-KNL-SPDG-QYVP 81 (130)
T ss_pred cccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCC-CCc-CccC-cccC
Confidence 45666689999999999999999999999999999998765 34444332 4566677776431 111 1233 6899
Q ss_pred EEEEcC
Q 031078 159 SSLSPS 164 (166)
Q Consensus 159 Tll~~d 164 (166)
|++|+|
T Consensus 82 tivFld 87 (130)
T cd02960 82 RIMFVD 87 (130)
T ss_pred eEEEEC
Confidence 999987
No 85
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.23 E-value=4.7e-11 Score=92.26 Aligned_cols=63 Identities=14% Similarity=0.285 Sum_probs=50.8
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc--h-------------------HHHHHhCCCCcce
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--L-------------------ESTLSKLNISAVV 158 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~--~-------------------~~l~~~~~V~~vP 158 (166)
.+++++|+||++||++|+.+.|.++++.++ +++++.|+.++.. . ..+++.|+|.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 578999999999999999999999999763 6888888875431 0 1345678999999
Q ss_pred EEEEcC
Q 031078 159 SSLSPS 164 (166)
Q Consensus 159 Tll~~d 164 (166)
+.+++|
T Consensus 145 ~t~vid 150 (185)
T PRK15412 145 ETFLID 150 (185)
T ss_pred eEEEEC
Confidence 888876
No 86
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.22 E-value=3.5e-11 Score=106.18 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=53.2
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEEC----------------------------CCcchHHHH
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDI----------------------------DQKGLESTL 149 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDi----------------------------d~~~~~~l~ 149 (166)
++|++||+|||+||++|+.+.|.+++++++++ ++.++.|.. |.+ ..++
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~--~~la 132 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG--GTLA 132 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc--HHHH
Confidence 57899999999999999999999999999886 577766543 222 5788
Q ss_pred HhCCCCcceEEEEcC
Q 031078 150 SKLNISAVVSSLSPS 164 (166)
Q Consensus 150 ~~~~V~~vPTll~~d 164 (166)
+.|+|.++||++++|
T Consensus 133 k~fgV~giPTt~IID 147 (521)
T PRK14018 133 QSLNISVYPSWAIIG 147 (521)
T ss_pred HHcCCCCcCeEEEEc
Confidence 999999999998875
No 87
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.19 E-value=3.9e-11 Score=84.74 Aligned_cols=65 Identities=14% Similarity=0.254 Sum_probs=47.0
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEE-CCCcch-----------------HHHHHhCCCCcceEE
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKID-IDQKGL-----------------ESTLSKLNISAVVSS 160 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vD-id~~~~-----------------~~l~~~~~V~~vPTl 160 (166)
++++++|+||++||++|+.+.|.++++.+++.+ +.++.+. .+.+.. .++.++|++.++|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 368999999999999999999999999888754 6666552 121111 345556667777777
Q ss_pred EEcC
Q 031078 161 LSPS 164 (166)
Q Consensus 161 l~~d 164 (166)
+++|
T Consensus 100 ~vid 103 (114)
T cd02967 100 VLLD 103 (114)
T ss_pred EEEC
Confidence 6665
No 88
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.8e-11 Score=101.77 Aligned_cols=64 Identities=25% Similarity=0.369 Sum_probs=60.1
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceEEEEcCC
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVSSLSPSF 165 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d~ 165 (166)
.++.++|.||++||++|+.+.|.+.++++.+.+ +.+..||++++ .+++++|+|.++||+.++..
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~--~~~~~~y~i~gfPtl~~f~~ 110 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH--KDLCEKYGIQGFPTLKVFRP 110 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh--HHHHHhcCCccCcEEEEEcC
Confidence 678999999999999999999999999999987 99999999998 99999999999999998764
No 89
>smart00594 UAS UAS domain.
Probab=99.18 E-value=1e-10 Score=84.70 Aligned_cols=78 Identities=4% Similarity=0.012 Sum_probs=64.6
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHH---HHHHHhCC-CcEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHP-HVTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 87 ~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l---~~la~~~~-~v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
..+|++++..+++++|.++|+|+++||+.|+.+...+ +++.+... ++.++.+|++..+..+++..|++.++|++++
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAI 92 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence 3578888888888999999999999999999998654 44444333 4888899998876688999999999999999
Q ss_pred cC
Q 031078 163 PS 164 (166)
Q Consensus 163 ~d 164 (166)
++
T Consensus 93 l~ 94 (122)
T smart00594 93 VD 94 (122)
T ss_pred Ee
Confidence 86
No 90
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.18 E-value=1.2e-10 Score=80.46 Aligned_cols=65 Identities=15% Similarity=0.340 Sum_probs=57.2
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhC--CCcEEEEEECCCc---------------------chHHHHHhCCCCc
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKH--PHVTTYKIDIDQK---------------------GLESTLSKLNISA 156 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~--~~v~~~~vDid~~---------------------~~~~l~~~~~V~~ 156 (166)
.+++++|+||++||++|+...+.+.++.+++ +++.++.|++|.+ ....+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 3689999999999999999999999999998 4699999999873 0156889999999
Q ss_pred ceEEEEcC
Q 031078 157 VVSSLSPS 164 (166)
Q Consensus 157 vPTll~~d 164 (166)
+|+++++|
T Consensus 98 ~P~~~l~d 105 (116)
T cd02966 98 LPTTFLID 105 (116)
T ss_pred cceEEEEC
Confidence 99999987
No 91
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.14 E-value=2.4e-10 Score=82.68 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=53.0
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC--cEEEEEECCC-----c--------------------chHHHHHhC
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQ-----K--------------------GLESTLSKL 152 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~~~~vDid~-----~--------------------~~~~l~~~~ 152 (166)
.++++||+||++||++|+...|.++++.++|++ +.++.|+.++ . ....+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 468999999999999999999999999999974 7888775421 0 013567788
Q ss_pred CCCcceEEEEcC
Q 031078 153 NISAVVSSLSPS 164 (166)
Q Consensus 153 ~V~~vPTll~~d 164 (166)
++.++|+++++|
T Consensus 102 ~v~~~P~~~vid 113 (126)
T cd03012 102 GNQYWPALYLID 113 (126)
T ss_pred CCCcCCeEEEEC
Confidence 999999999987
No 92
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=2.3e-11 Score=106.60 Aligned_cols=81 Identities=14% Similarity=0.250 Sum_probs=68.7
Q ss_pred CeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC---C-cEEEEEECCCcchHHHHHhCCCC
Q 031078 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP---H-VTTYKIDIDQKGLESTLSKLNIS 155 (166)
Q Consensus 80 ~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~---~-v~~~~vDid~~~~~~l~~~~~V~ 155 (166)
..+...+.++|+..+.. +.+-.+|.||++|||+|++++|.++++++... . +.++.||+-++.|..+|++|+|.
T Consensus 39 D~ii~Ld~~tf~~~v~~---~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~ 115 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFG---SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS 115 (606)
T ss_pred CCeEEeehhhhHHHhcc---cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence 33444557999999763 44688999999999999999999999998764 3 89999999888789999999999
Q ss_pred cceEEEEc
Q 031078 156 AVVSSLSP 163 (166)
Q Consensus 156 ~vPTll~~ 163 (166)
++|++-.+
T Consensus 116 ~~Ptlryf 123 (606)
T KOG1731|consen 116 GYPTLRYF 123 (606)
T ss_pred CCceeeec
Confidence 99998765
No 93
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.10 E-value=2.8e-10 Score=86.91 Aligned_cols=63 Identities=17% Similarity=0.376 Sum_probs=50.1
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc---------------------hHHHHHhCCCCcce
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG---------------------LESTLSKLNISAVV 158 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~---------------------~~~l~~~~~V~~vP 158 (166)
.+++++|+||++||++|+.+.|.++++.++ ++.++.|+.++.. ...++++|++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 568999999999999999999999999764 4777777764320 13466788999999
Q ss_pred EEEEcC
Q 031078 159 SSLSPS 164 (166)
Q Consensus 159 Tll~~d 164 (166)
+.+++|
T Consensus 140 ~~~~id 145 (173)
T TIGR00385 140 ETFLVD 145 (173)
T ss_pred eEEEEc
Confidence 887776
No 94
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.10 E-value=3.1e-10 Score=81.09 Aligned_cols=62 Identities=24% Similarity=0.534 Sum_probs=48.7
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEEC---------------------CCcchHHHHHhCCCCcce
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDI---------------------DQKGLESTLSKLNISAVV 158 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDi---------------------d~~~~~~l~~~~~V~~vP 158 (166)
.+++++|+||++||++|+.+.|.+.++.+++. +..+.+|- |.+ ..++++|+|.++|
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~i~~~P 95 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPD--GVISARWGVSVTP 95 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCC--cHHHHhCCCCccc
Confidence 45899999999999999999999999988753 22222221 122 5789999999999
Q ss_pred EEEEcC
Q 031078 159 SSLSPS 164 (166)
Q Consensus 159 Tll~~d 164 (166)
+++++|
T Consensus 96 ~~~vid 101 (123)
T cd03011 96 AIVIVD 101 (123)
T ss_pred EEEEEc
Confidence 999987
No 95
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.10 E-value=3.3e-10 Score=99.98 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=69.2
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHH---HHHHHhCCCcEEEEEECCCcc--hHHHHHhCCCCc
Q 031078 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHPHVTTYKIDIDQKG--LESTLSKLNISA 156 (166)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l---~~la~~~~~v~~~~vDid~~~--~~~l~~~~~V~~ 156 (166)
..+.+.+++++.+.+ +.+|+|+++|||+||-.||.+++.. .+...+.+|++..++|+.+++ ..++.++|++-+
T Consensus 457 q~~s~~~~L~~~la~--~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELDQALAE--AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHHHHHHh--CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 567777799999875 3447999999999999999999876 455667789999999999874 456789999999
Q ss_pred ceEEEEcCC
Q 031078 157 VVSSLSPSF 165 (166)
Q Consensus 157 vPTll~~d~ 165 (166)
+|++++++.
T Consensus 535 ~P~~~ff~~ 543 (569)
T COG4232 535 VPTYLFFGP 543 (569)
T ss_pred CCEEEEECC
Confidence 999999984
No 96
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.08 E-value=4.3e-10 Score=84.91 Aligned_cols=65 Identities=17% Similarity=0.398 Sum_probs=55.8
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC--cEEEEEECCCcc--------------------hHHHHHhCCCCcc
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQKG--------------------LESTLSKLNISAV 157 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~~~~vDid~~~--------------------~~~l~~~~~V~~v 157 (166)
.+++++|+||++||++|+...+.+.++.+++++ +.++.|+.|... ...++++|+|.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 467899999999999999999999999999864 889999886431 2567899999999
Q ss_pred eEEEEcC
Q 031078 158 VSSLSPS 164 (166)
Q Consensus 158 PTll~~d 164 (166)
|+++++|
T Consensus 140 P~~~lid 146 (173)
T PRK03147 140 PTTFLID 146 (173)
T ss_pred CeEEEEC
Confidence 9998886
No 97
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.06 E-value=3.6e-10 Score=92.94 Aligned_cols=71 Identities=24% Similarity=0.371 Sum_probs=61.2
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHH----hCCC--cEEEEEECCCcchHHHHHhCCCCcceEE
Q 031078 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSA----KHPH--VTTYKIDIDQKGLESTLSKLNISAVVSS 160 (166)
Q Consensus 87 ~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~----~~~~--v~~~~vDid~~~~~~l~~~~~V~~vPTl 160 (166)
.++++.++. ....++|.|||+||+..+.+.|++++.++ ++|+ +.+.+||+|++ ..++++|.|..+||+
T Consensus 3 ~~N~~~il~----s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e--~~ia~ky~I~KyPTl 76 (375)
T KOG0912|consen 3 SENIDSILD----SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE--DDIADKYHINKYPTL 76 (375)
T ss_pred cccHHHhhc----cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh--hHHhhhhccccCcee
Confidence 456777765 46799999999999999999999988775 4664 99999999998 899999999999998
Q ss_pred EEc
Q 031078 161 LSP 163 (166)
Q Consensus 161 l~~ 163 (166)
-++
T Consensus 77 Kvf 79 (375)
T KOG0912|consen 77 KVF 79 (375)
T ss_pred eee
Confidence 764
No 98
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.05 E-value=4.4e-10 Score=106.63 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=53.8
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC--cEEEEEEC---CCc----------------------chHHHHHhC
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDI---DQK----------------------GLESTLSKL 152 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~~~~vDi---d~~----------------------~~~~l~~~~ 152 (166)
.+|++||+|||+||++|+.+.|.|+++.++|++ +.++.|.. |.+ ....+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 478999999999999999999999999999975 77777742 221 124677899
Q ss_pred CCCcceEEEEcC
Q 031078 153 NISAVVSSLSPS 164 (166)
Q Consensus 153 ~V~~vPTll~~d 164 (166)
+|.++|+++++|
T Consensus 499 ~V~~iPt~ilid 510 (1057)
T PLN02919 499 GVSSWPTFAVVS 510 (1057)
T ss_pred CCCccceEEEEC
Confidence 999999999996
No 99
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.05 E-value=6.6e-10 Score=85.93 Aligned_cols=60 Identities=15% Similarity=0.300 Sum_probs=49.1
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc-----------hHHHHHhCCC--CcceEEEEcCC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-----------LESTLSKLNI--SAVVSSLSPSF 165 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~-----------~~~l~~~~~V--~~vPTll~~d~ 165 (166)
+|+||++||++|+.+.|.+++++++| ++.++.|++|... ...+.+.|++ .++|+.+++|.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~ 145 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNV 145 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeC
Confidence 77899999999999999999999998 5777778777441 1236678995 69999999874
No 100
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.00 E-value=8.9e-10 Score=81.17 Aligned_cols=65 Identities=22% Similarity=0.430 Sum_probs=53.7
Q ss_pred CCCcEEEEEEcC-CChhHHhHhHHHHHHHHhCC--CcEEEEEECCCcc-------------------hHHHHHhCCCC--
Q 031078 100 DSLPAIFYFTAA-WCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-------------------LESTLSKLNIS-- 155 (166)
Q Consensus 100 ~~k~vvV~F~a~-WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~~-------------------~~~l~~~~~V~-- 155 (166)
.+|++||+||++ ||++|+...|.++++.++|. ++.++.|..+.+. ...+.++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 678999999999 99999999999999988754 4888888766541 14678888988
Q ss_pred -------cceEEEEcC
Q 031078 156 -------AVVSSLSPS 164 (166)
Q Consensus 156 -------~vPTll~~d 164 (166)
++|+++++|
T Consensus 107 ~~~~~~~~~P~~~lId 122 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLID 122 (146)
T ss_dssp CCTTTTSSSSEEEEEE
T ss_pred cccccCCeecEEEEEE
Confidence 999988876
No 101
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.96 E-value=2.7e-09 Score=82.80 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=49.3
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc------------------chHHHHHhCCCCcceEEE
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK------------------GLESTLSKLNISAVVSSL 161 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~------------------~~~~l~~~~~V~~vPTll 161 (166)
.+++++|+||++||++|+.+.|.+.++.+++ ++.++.|..+.. ...++++.|++.++|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 5689999999999999999999999998775 344444442211 014677899999999988
Q ss_pred EcC
Q 031078 162 SPS 164 (166)
Q Consensus 162 ~~d 164 (166)
++|
T Consensus 152 lID 154 (189)
T TIGR02661 152 LLD 154 (189)
T ss_pred EEC
Confidence 877
No 102
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.96 E-value=2.8e-09 Score=72.57 Aligned_cols=62 Identities=21% Similarity=0.475 Sum_probs=55.1
Q ss_pred CCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECC-CcchHHHHHhCC--CCcceEEEEcC
Q 031078 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDID-QKGLESTLSKLN--ISAVVSSLSPS 164 (166)
Q Consensus 101 ~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid-~~~~~~l~~~~~--V~~vPTll~~d 164 (166)
++++++.||++||++|+.+.|.+.++.+++.+ +.++.+|+. .. .++...|+ +..+|++++.+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~p~~~~~~ 97 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDEN--PDLAAEFGVAVRSIPTLLLFK 97 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCC--hHHHHHHhhhhccCCeEEEEe
Confidence 67999999999999999999999999999985 999999996 55 78899999 89999987543
No 103
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.92 E-value=7.4e-09 Score=75.02 Aligned_cols=83 Identities=16% Similarity=0.356 Sum_probs=57.6
Q ss_pred ecCHHHHHHHHhhhhcCCCcEEEEEEcC-------CChhHHhHhHHHHHHHHhCC-CcEEEEEECCCcc-----hHHHHH
Q 031078 84 IESGEEFNSSLGKVKDDSLPAIFYFTAA-------WCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQKG-----LESTLS 150 (166)
Q Consensus 84 i~s~~~f~~~l~~~~~~~k~vvV~F~a~-------WC~~Ck~~~p~l~~la~~~~-~v~~~~vDid~~~-----~~~l~~ 150 (166)
+...++|.+.++...+++++++|+|+++ ||+.|+...|.+++..+..+ +..++.+.+.... +-...+
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 5678899999987677888999999865 99999999999999888776 4888888885431 012223
Q ss_pred --hCCCCcceEEEEcCCC
Q 031078 151 --KLNISAVVSSLSPSFP 166 (166)
Q Consensus 151 --~~~V~~vPTll~~d~~ 166 (166)
++++.++||++-++++
T Consensus 82 ~p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWETG 99 (119)
T ss_dssp --CC---SSSEEEECTSS
T ss_pred cceeeeeecceEEEECCC
Confidence 5999999999988754
No 104
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.4e-09 Score=84.39 Aligned_cols=85 Identities=22% Similarity=0.273 Sum_probs=73.9
Q ss_pred CCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCCcchHHHHHhCCC
Q 031078 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKGLESTLSKLNI 154 (166)
Q Consensus 77 ~~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~~~~~l~~~~~V 154 (166)
++..+...++.+.+++.+. ++..+.++|.|||.|.+.|+...|++.+|+.+|. +++|.+||+... ++.+++|+|
T Consensus 122 gpe~ikyf~~~q~~deel~--rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf--pd~a~kfri 197 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELD--RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF--PDVAAKFRI 197 (265)
T ss_pred CchheeeecchhhHHHHhc--cCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC--cChHHheee
Confidence 5556777778888888886 4677899999999999999999999999999996 499999999998 899999988
Q ss_pred ------CcceEEEEcCC
Q 031078 155 ------SAVVSSLSPSF 165 (166)
Q Consensus 155 ------~~vPTll~~d~ 165 (166)
+.+||++++.+
T Consensus 198 s~s~~srQLPT~ilFq~ 214 (265)
T KOG0914|consen 198 SLSPGSRQLPTYILFQK 214 (265)
T ss_pred ccCcccccCCeEEEEcc
Confidence 47899888754
No 105
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.88 E-value=1.1e-08 Score=62.36 Aligned_cols=58 Identities=22% Similarity=0.460 Sum_probs=49.0
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHH---HhCCCCcceEEEEcC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTL---SKLNISAVVSSLSPS 164 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~---~~~~V~~vPTll~~d 164 (166)
++.||+.||++|+.+.+.++++....+++.+..+|++.. .... ..+++..+|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDED--PALEKELKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCC--hHHhhHHHhCCCccccEEEEEe
Confidence 578999999999999999999954555699999999987 3333 489999999999886
No 106
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=5.7e-09 Score=89.01 Aligned_cols=78 Identities=23% Similarity=0.379 Sum_probs=65.1
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC---CcEEEEEECCCcchHHHHHhCCCCcc
Q 031078 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP---HVTTYKIDIDQKGLESTLSKLNISAV 157 (166)
Q Consensus 81 v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~---~v~~~~vDid~~~~~~l~~~~~V~~v 157 (166)
+... +.++|+..+. +.+..++|.||++||++|+.+.|.++++++.+. .+.+..+|++.. ..++++++|+++
T Consensus 146 v~~l-~~~~~~~~~~---~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~--~~~~~~~~v~~~ 219 (383)
T KOG0191|consen 146 VFEL-TKDNFDETVK---DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVH--KSLASRLEVRGY 219 (383)
T ss_pred eEEc-cccchhhhhh---ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchH--HHHhhhhcccCC
Confidence 4444 4577777654 366789999999999999999999999998774 399999999965 899999999999
Q ss_pred eEEEEcC
Q 031078 158 VSSLSPS 164 (166)
Q Consensus 158 PTll~~d 164 (166)
||++++.
T Consensus 220 Pt~~~f~ 226 (383)
T KOG0191|consen 220 PTLKLFP 226 (383)
T ss_pred ceEEEec
Confidence 9997764
No 107
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.82 E-value=1.5e-08 Score=66.43 Aligned_cols=53 Identities=19% Similarity=0.383 Sum_probs=40.6
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHh-----CCCCcceEEEEcC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSK-----LNISAVVSSLSPS 164 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~-----~~V~~vPTll~~d 164 (166)
++.||++||++|+.+.+.++++. +.+..+|++++ ....+. +++.++|++++-+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-----~~~~~idi~~~--~~~~~~~~~~~~~~~~vP~i~~~~ 59 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-----AAYEWVDIEED--EGAADRVVSVNNGNMTVPTVKFAD 59 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CceEEEeCcCC--HhHHHHHHHHhCCCceeCEEEECC
Confidence 67899999999999999987763 45567888876 444333 4899999987644
No 108
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.81 E-value=2.1e-08 Score=64.56 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=44.3
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc--hHHHHHhCCCCcceEEEEcC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~--~~~l~~~~~V~~vPTll~~d 164 (166)
+..|+++||++|+.+.+.+++ .++.+..+|++++. ..++.+.+++.++|++++.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~ 58 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGH 58 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECC
Confidence 567999999999999988876 35888899998762 13356789999999998753
No 109
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.79 E-value=2.4e-08 Score=75.74 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=54.0
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCCc------c---------------------hHHHHH
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQK------G---------------------LESTLS 150 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~------~---------------------~~~l~~ 150 (166)
.++++||+||++||+.|....+.+.++.++++ ++.|+.|..|.. . ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 45799999999999999999999999999987 489999987641 0 135667
Q ss_pred hCCCCcceEEEEcC
Q 031078 151 KLNISAVVSSLSPS 164 (166)
Q Consensus 151 ~~~V~~vPTll~~d 164 (166)
.|+|..+|+++++|
T Consensus 104 ~~~v~~~P~~~lid 117 (171)
T cd02969 104 AYGAACTPDFFLFD 117 (171)
T ss_pred HcCCCcCCcEEEEC
Confidence 88888899888876
No 110
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.78 E-value=1.5e-08 Score=79.40 Aligned_cols=60 Identities=15% Similarity=0.060 Sum_probs=47.9
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCC---------cchHHHHHhCCCCcceEE
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ---------KGLESTLSKLNISAVVSS 160 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~---------~~~~~l~~~~~V~~vPTl 160 (166)
.++++||+|||+||++|+...|.++++.++|. ++.++.|++++ +...+.++++++. +|.+
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~-fpvl 108 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK-YNFF 108 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCC-ceee
Confidence 46899999999999999999999999999986 48999998642 1245667777773 5654
No 111
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=3.1e-08 Score=71.25 Aligned_cols=81 Identities=22% Similarity=0.362 Sum_probs=63.4
Q ss_pred EecCHHHHHHHHhhhhcCCCcEEEEEEcC--------CChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcc-----hHHH
Q 031078 83 VIESGEEFNSSLGKVKDDSLPAIFYFTAA--------WCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKG-----LEST 148 (166)
Q Consensus 83 ~i~s~~~f~~~l~~~~~~~k~vvV~F~a~--------WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~-----~~~l 148 (166)
...-.++|++.++...++.+ ++|+|+++ ||+.|.+..|++.+..+..++ +.|+.+++..-. .-.+
T Consensus 8 ~~~g~e~~~~~~~~~~n~~~-ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~F 86 (128)
T KOG3425|consen 8 LLPGYESFEETLKNVENGKT-IFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPF 86 (128)
T ss_pred ccchHHHHHHHHHHHhCCce-EEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcc
Confidence 34567899999987655544 99999864 999999999999999888775 999999986531 1234
Q ss_pred HHhCCC-CcceEEEEcC
Q 031078 149 LSKLNI-SAVVSSLSPS 164 (166)
Q Consensus 149 ~~~~~V-~~vPTll~~d 164 (166)
..+.++ .++||++-++
T Consensus 87 R~d~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 87 RKDPGILTAVPTLLRWK 103 (128)
T ss_pred ccCCCceeecceeeEEc
Confidence 456666 9999999887
No 112
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.76 E-value=2.6e-08 Score=74.39 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=46.1
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCC---------cchHHHHHh-CCCCcceEEE
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ---------KGLESTLSK-LNISAVVSSL 161 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~---------~~~~~l~~~-~~V~~vPTll 161 (166)
.+|++||+||++||+ |+...|.++++.++|. ++.++.|.++. +...+++++ +++. +|.+.
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~-fp~~~ 92 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVT-FPMFA 92 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCC-ceeee
Confidence 468999999999999 9999999999999996 48888887642 123455654 6653 66553
No 113
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.74 E-value=2.4e-08 Score=81.57 Aligned_cols=85 Identities=19% Similarity=0.170 Sum_probs=66.2
Q ss_pred CCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCc
Q 031078 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISA 156 (166)
Q Consensus 77 ~~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~ 156 (166)
.-+.+.+|.+.++|.+.+.+. ..+..|||+||-+.++.|+.|...|..|+++|+.++|++|..+.. . +..+|.+..
T Consensus 123 ~fG~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~--~-~~~~f~~~~ 198 (265)
T PF02114_consen 123 RFGEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKC--P-ASENFPDKN 198 (265)
T ss_dssp ---SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGC--C-TTTTS-TTC
T ss_pred cCceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhcc--C-cccCCcccC
Confidence 356788999999999998753 345689999999999999999999999999999999999999875 3 568999999
Q ss_pred ceEEEEcCC
Q 031078 157 VVSSLSPSF 165 (166)
Q Consensus 157 vPTll~~d~ 165 (166)
+||+++++.
T Consensus 199 LPtllvYk~ 207 (265)
T PF02114_consen 199 LPTLLVYKN 207 (265)
T ss_dssp -SEEEEEET
T ss_pred CCEEEEEEC
Confidence 999999863
No 114
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.71 E-value=2.8e-08 Score=77.11 Aligned_cols=63 Identities=10% Similarity=0.023 Sum_probs=47.6
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEE------EEEECCCcc---------------------------hH
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTT------YKIDIDQKG---------------------------LE 146 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~------~~vDid~~~---------------------------~~ 146 (166)
.||..+|.|||+||++|+...|.++++.++ ++.+ +-||.|+.. ..
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g 135 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG 135 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence 589999999999999999999999999653 2344 556665420 02
Q ss_pred HHHHhCCCCcceEE-EEcC
Q 031078 147 STLSKLNISAVVSS-LSPS 164 (166)
Q Consensus 147 ~l~~~~~V~~vPTl-l~~d 164 (166)
.++.+|++.++|+. +++|
T Consensus 136 ~v~~~~gv~~~P~T~fVID 154 (184)
T TIGR01626 136 AVKNAWQLNSEDSAIIVLD 154 (184)
T ss_pred hHHHhcCCCCCCceEEEEC
Confidence 45678899999777 6766
No 115
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.69 E-value=5.4e-08 Score=69.23 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=54.7
Q ss_pred CCCcEEEEEEcC-CChhHHhHhHHHHHHHHhCC--CcEEEEEECCCcc-------------------hHHHHHhCCCC--
Q 031078 100 DSLPAIFYFTAA-WCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-------------------LESTLSKLNIS-- 155 (166)
Q Consensus 100 ~~k~vvV~F~a~-WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~~-------------------~~~l~~~~~V~-- 155 (166)
.++++||+||+. ||+.|+...+.+.++.++++ ++.++.|..|..+ ...+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 458999999999 99999999999999998876 6999999887641 14677888888
Q ss_pred ----cceEEEEcC
Q 031078 156 ----AVVSSLSPS 164 (166)
Q Consensus 156 ----~vPTll~~d 164 (166)
.+|+++++|
T Consensus 104 ~~~~~~p~~~lid 116 (124)
T PF00578_consen 104 KDTLALPAVFLID 116 (124)
T ss_dssp TTSEESEEEEEEE
T ss_pred cCCceEeEEEEEC
Confidence 888888876
No 116
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.68 E-value=4.8e-08 Score=71.71 Aligned_cols=64 Identities=17% Similarity=0.339 Sum_probs=44.4
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHh---CCCCcceEEEEcCC
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSK---LNISAVVSSLSPSF 165 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~---~~V~~vPTll~~d~ 165 (166)
.++..++.|..+|||.|+...|.+.++++..|++.+--+..|++ .++.++ .|...+|+++++|.
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~--~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDEN--KELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHH--HHHTTTTTT-SS--SSEEEEE-T
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCC--hhHHHHHHhCCCeecCEEEEEcC
Confidence 44578888999999999999999999999998877766777765 566554 47899999999973
No 117
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.65 E-value=4.5e-08 Score=73.79 Aligned_cols=65 Identities=15% Similarity=0.391 Sum_probs=51.0
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhC----CCcEEEEEECCCcc-----------------------hHHHHHhC
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKH----PHVTTYKIDIDQKG-----------------------LESTLSKL 152 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~----~~v~~~~vDid~~~-----------------------~~~l~~~~ 152 (166)
.||.+.++|-|.||++||.+-|.+.++.++. +.+.++.|+-|.+. ..++.++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 5689999999999999999999988887654 33555656555431 25778899
Q ss_pred CCCcceEEEEcC
Q 031078 153 NISAVVSSLSPS 164 (166)
Q Consensus 153 ~V~~vPTll~~d 164 (166)
+|.++|++.+++
T Consensus 112 ~v~~iP~l~i~~ 123 (157)
T KOG2501|consen 112 EVKGIPALVILK 123 (157)
T ss_pred ccCcCceeEEec
Confidence 999999999875
No 118
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.64 E-value=8.9e-08 Score=63.77 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=44.4
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc---hHHHHHhCCCCcceEEEEc
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG---LESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~---~~~l~~~~~V~~vPTll~~ 163 (166)
|+.|+++||++|+.+.+.++++.-. +.+.++.+|.+.++ ...+.+.+++..+|++++-
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~ 61 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFIN 61 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEEC
Confidence 5789999999999999999998622 23778888877542 1236677899999998763
No 119
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.63 E-value=6.6e-08 Score=77.80 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=38.2
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECC
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDID 141 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid 141 (166)
.++++||+||++||++|+...|.+.++.++|. |+.++.|+++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 46899999999999999999999999999986 4899999874
No 120
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.63 E-value=2.5e-07 Score=73.42 Aligned_cols=76 Identities=12% Similarity=0.249 Sum_probs=60.7
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc---------chHHHHHhCCCCcce
Q 031078 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK---------GLESTLSKLNISAVV 158 (166)
Q Consensus 88 ~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~---------~~~~l~~~~~V~~vP 158 (166)
++-++.|... .++..+++||.+.|+.|+.+.|++..++++| |+.++.|++|.. ....++++++|..+|
T Consensus 109 ~~~~~~l~~l--a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~P 185 (215)
T PF13728_consen 109 QKRDKALKQL--AQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTP 185 (215)
T ss_pred HHHHHHHHHH--hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCC
Confidence 3334455543 3568899999999999999999999999999 678888888732 127789999999999
Q ss_pred EEEEcCCC
Q 031078 159 SSLSPSFP 166 (166)
Q Consensus 159 Tll~~d~~ 166 (166)
++++++.+
T Consensus 186 al~Lv~~~ 193 (215)
T PF13728_consen 186 ALFLVNPN 193 (215)
T ss_pred EEEEEECC
Confidence 99998753
No 121
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.61 E-value=1.1e-07 Score=73.68 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=77.0
Q ss_pred CCCCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCC
Q 031078 75 PDGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNI 154 (166)
Q Consensus 75 ~~~~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V 154 (166)
..+-+.+.+|.+..+|-+... ....+|+.||-+.-..|+-|...++.|++.|.+.+|++||++.. +-++.+++|
T Consensus 62 ~~GhG~y~ev~~Ekdf~~~~~----kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~--PFlv~kL~I 135 (211)
T KOG1672|consen 62 SKGHGEYEEVASEKDFFEEVK----KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKA--PFLVTKLNI 135 (211)
T ss_pred HcCCceEEEeccHHHHHHHhh----cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccC--ceeeeeeee
Confidence 356788999999999999875 45689999999999999999999999999999999999999998 999999999
Q ss_pred CcceEEEEcC
Q 031078 155 SAVVSSLSPS 164 (166)
Q Consensus 155 ~~vPTll~~d 164 (166)
.-+|++++++
T Consensus 136 kVLP~v~l~k 145 (211)
T KOG1672|consen 136 KVLPTVALFK 145 (211)
T ss_pred eEeeeEEEEE
Confidence 9999998764
No 122
>PLN02412 probable glutathione peroxidase
Probab=98.58 E-value=1.7e-07 Score=71.27 Aligned_cols=61 Identities=10% Similarity=0.049 Sum_probs=46.6
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC--cEEEEEECCC------cch----HHHHHhCCCCcceEEE
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQ------KGL----ESTLSKLNISAVVSSL 161 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~~~~vDid~------~~~----~~l~~~~~V~~vPTll 161 (166)
.+|++||+||++||++|+...|.+.++.++|.+ +.++.|..|. ... ..+++++++. +|.+.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~-fpvl~ 100 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAE-FPIFD 100 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCC-CceEe
Confidence 458999999999999999999999999999974 8999998752 111 2224666764 66653
No 123
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.57 E-value=3.5e-07 Score=67.41 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=57.9
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcC--CChhHHhHhHHHHHHHHhCC-C-cEEEEEECCCcchHHHHHhCCCCcceEEEEc
Q 031078 88 EEFNSSLGKVKDDSLPAIFYFTAA--WCGPCKFIWPVIGELSAKHP-H-VTTYKIDIDQKGLESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 88 ~~f~~~l~~~~~~~k~vvV~F~a~--WC~~Ck~~~p~l~~la~~~~-~-v~~~~vDid~~~~~~l~~~~~V~~vPTll~~ 163 (166)
+++++.+. .++..+++|-.+ -++.+-...-++++++++|+ + ++|++||+|++ ++++.+|||.++||++++
T Consensus 25 ~~~~~~~~----~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~--~~LA~~fgV~siPTLl~F 98 (132)
T PRK11509 25 SRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS--EAIGDRFGVFRFPATLVF 98 (132)
T ss_pred ccHHHHHh----CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC--HHHHHHcCCccCCEEEEE
Confidence 55555553 334555555433 57889999999999999998 4 99999999998 999999999999999998
Q ss_pred CC
Q 031078 164 SF 165 (166)
Q Consensus 164 d~ 165 (166)
+.
T Consensus 99 kd 100 (132)
T PRK11509 99 TG 100 (132)
T ss_pred EC
Confidence 63
No 124
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.57 E-value=1.1e-07 Score=70.90 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=46.1
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECC--------C-cchHHHHHh-CCCCcceEEE
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDID--------Q-KGLESTLSK-LNISAVVSSL 161 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid--------~-~~~~~l~~~-~~V~~vPTll 161 (166)
.||++||+||++||++|+...|.+.++.++|+ ++.++.|+++ . +...+.+++ +++. +|.+.
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~-fp~~~ 93 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVT-FPMFS 93 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCC-CCccc
Confidence 46789999999999999999999999999986 4899988852 1 113445554 6663 66543
No 125
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.55 E-value=1.2e-07 Score=72.26 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=44.9
Q ss_pred HHHhhhhcCCCcEEEEEEcCCChhHHhHhHH-H--HHHHHhCC-CcEEEEEECCCcchHHHHHhC--------CCCcceE
Q 031078 92 SSLGKVKDDSLPAIFYFTAAWCGPCKFIWPV-I--GELSAKHP-HVTTYKIDIDQKGLESTLSKL--------NISAVVS 159 (166)
Q Consensus 92 ~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~-l--~~la~~~~-~v~~~~vDid~~~~~~l~~~~--------~V~~vPT 159 (166)
+.++++++.+|+++|.++.+||+.|+.|... | .++++.+. ++.-++||.++. +++...| +..|+|+
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~--Pdid~~y~~~~~~~~~~gGwPl 105 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREER--PDIDKIYMNAVQAMSGSGGWPL 105 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT---HHHHHHHHHHHHHHHS---SSE
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccC--ccHHHHHHHHHHHhcCCCCCCc
Confidence 3444456688999999999999999999852 2 33343332 267788898887 8887777 7899999
Q ss_pred EEEcC
Q 031078 160 SLSPS 164 (166)
Q Consensus 160 ll~~d 164 (166)
.++++
T Consensus 106 ~vflt 110 (163)
T PF03190_consen 106 TVFLT 110 (163)
T ss_dssp EEEE-
T ss_pred eEEEC
Confidence 99875
No 126
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.55 E-value=2.9e-07 Score=67.55 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=39.0
Q ss_pred CCCcEEEEEEcCC-ChhHHhHhHHHHHHHHhCCCcEEEEEECCC
Q 031078 100 DSLPAIFYFTAAW-CGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142 (166)
Q Consensus 100 ~~k~vvV~F~a~W-C~~Ck~~~p~l~~la~~~~~v~~~~vDid~ 142 (166)
.+|++||+||+.| |++|+...+.++++.++++++.++.|++|.
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~ 68 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADL 68 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCC
Confidence 4679999999999 699999999999999999889999999874
No 127
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.54 E-value=4e-07 Score=65.65 Aligned_cols=74 Identities=9% Similarity=0.047 Sum_probs=62.0
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcC----CChhHHhHh--HHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEE
Q 031078 88 EEFNSSLGKVKDDSLPAIFYFTAA----WCGPCKFIW--PVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSL 161 (166)
Q Consensus 88 ~~f~~~l~~~~~~~k~vvV~F~a~----WC~~Ck~~~--p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll 161 (166)
..|++++..++++.|.++|++|++ ||..|+... |.+.++..+ ++.++..|++..+..+++..+++.++|++.
T Consensus 4 gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~ 81 (116)
T cd02991 4 GTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLA 81 (116)
T ss_pred CcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEE
Confidence 467888888889999999999999 999998774 555555543 488999999987668899999999999999
Q ss_pred Ec
Q 031078 162 SP 163 (166)
Q Consensus 162 ~~ 163 (166)
++
T Consensus 82 ~l 83 (116)
T cd02991 82 MI 83 (116)
T ss_pred EE
Confidence 87
No 128
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.54 E-value=4.2e-07 Score=66.52 Aligned_cols=42 Identities=10% Similarity=0.199 Sum_probs=34.0
Q ss_pred CcEEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCCc
Q 031078 102 LPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQK 143 (166)
Q Consensus 102 k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~ 143 (166)
+.+|++|++.||++|+...+.+.++.+++. ++.++.|..|..
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 344454569999999999999999998884 588998887754
No 129
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.52 E-value=4.7e-07 Score=61.23 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=47.6
Q ss_pred EEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc--hHHHHHhCC--CCcceEEEE
Q 031078 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLN--ISAVVSSLS 162 (166)
Q Consensus 104 vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~--~~~l~~~~~--V~~vPTll~ 162 (166)
-|+.|+.+||++|++....++++..++.++.+..+|++.++ ..++....+ +..+|++++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi 64 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV 64 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE
Confidence 47889999999999999999999988878999999998752 134444444 589999875
No 130
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.50 E-value=4.4e-07 Score=69.02 Aligned_cols=56 Identities=9% Similarity=0.021 Sum_probs=44.0
Q ss_pred CCCcEEEEEEcCC-ChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc-hHHHHHhCCCC
Q 031078 100 DSLPAIFYFTAAW-CGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-LESTLSKLNIS 155 (166)
Q Consensus 100 ~~k~vvV~F~a~W-C~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~-~~~l~~~~~V~ 155 (166)
.+|++||+||+.| |++|+...+.+.++.+++.++.++.|..|... ..++++++++.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~ 100 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLE 100 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCC
Confidence 4679999999999 99999999999999999878999999887531 23344444443
No 131
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.41 E-value=8e-07 Score=64.61 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=49.1
Q ss_pred CCCcEEEEEE-cCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCCcc-------------------hHHHHHhCCCCcc
Q 031078 100 DSLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-------------------LESTLSKLNISAV 157 (166)
Q Consensus 100 ~~k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~~-------------------~~~l~~~~~V~~v 157 (166)
.+++++|+|| +.||+.|....+.+.++.+++. ++.++.|..|..+ ...+++.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 3679999999 5899999999999999988775 4888888776431 1356666777766
Q ss_pred ---------eEEEEcC
Q 031078 158 ---------VSSLSPS 164 (166)
Q Consensus 158 ---------PTll~~d 164 (166)
|+.+++|
T Consensus 102 ~~~~~~~~~p~~~lid 117 (140)
T cd03017 102 KKKKYMGIERSTFLID 117 (140)
T ss_pred cccccCCcceeEEEEC
Confidence 6766665
No 132
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.40 E-value=6.5e-07 Score=69.04 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=34.9
Q ss_pred CCCcE-EEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECC
Q 031078 100 DSLPA-IFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDID 141 (166)
Q Consensus 100 ~~k~v-vV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid 141 (166)
.+|++ |+.+||+||++|+...|.++++.++|. ++.++.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 35654 456699999999999999999999986 4899999864
No 133
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.36 E-value=1e-06 Score=68.41 Aligned_cols=59 Identities=7% Similarity=0.091 Sum_probs=46.4
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCC---------cchHHHHH-hCCCCcceEE
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ---------KGLESTLS-KLNISAVVSS 160 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~---------~~~~~l~~-~~~V~~vPTl 160 (166)
.||++||.|||+||+.|+ ..+.|+++.++|. ++.++.+.+++ ++..+.++ +|++. +|.+
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~ 94 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMF 94 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeE
Confidence 468999999999999997 5889999999986 48999998753 11345565 68874 7877
No 134
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.35 E-value=1.5e-06 Score=59.13 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=47.2
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc--hHHHHHhCC--CCcceEEEEc
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLN--ISAVVSSLSP 163 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~--~~~l~~~~~--V~~vPTll~~ 163 (166)
|+.|..+||++|+.+...++++..+++++.+..+|++.++ ...+.+.++ +..+|++++-
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~ 64 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVD 64 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEEC
Confidence 6789999999999999999999877778888889998642 234556666 3799999763
No 135
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.35 E-value=2.2e-06 Score=54.94 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=39.7
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHH----HhCCCCcceEEEEcC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTL----SKLNISAVVSSLSPS 164 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~----~~~~V~~vPTll~~d 164 (166)
++.|+.+||++|+.+...+++. ++.+..+|++.+ .... +..++.++|++++-+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~--~~~~~~~~~~~~~~~vP~i~~~~ 58 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDED--PEALEELKKLNGYRSVPVVVIGD 58 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCC--HHHHHHHHHHcCCcccCEEEECC
Confidence 5779999999999998888763 567777888765 3333 333789999998743
No 136
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.33 E-value=1.4e-06 Score=67.36 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=49.8
Q ss_pred CCCcEEEEEE-cCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCCcc-----------------------hHHHHHhCC
Q 031078 100 DSLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-----------------------LESTLSKLN 153 (166)
Q Consensus 100 ~~k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~~-----------------------~~~l~~~~~ 153 (166)
.++++||+|| +.||+.|....+.+.++.+++. ++.++.|.+|... ...+++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 4679999999 9999999999999999988874 5778888766420 135667778
Q ss_pred CC------cceEEEEcC
Q 031078 154 IS------AVVSSLSPS 164 (166)
Q Consensus 154 V~------~vPTll~~d 164 (166)
|. ..|+.+++|
T Consensus 110 v~~~~~g~~~p~tfiID 126 (187)
T TIGR03137 110 VLIEEAGLADRGTFVID 126 (187)
T ss_pred CcccCCCceeeEEEEEC
Confidence 75 357777765
No 137
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.32 E-value=3.1e-06 Score=68.86 Aligned_cols=72 Identities=11% Similarity=0.169 Sum_probs=57.9
Q ss_pred HHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcch---------HHHHHhCCCCcceEEE
Q 031078 91 NSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGL---------ESTLSKLNISAVVSSL 161 (166)
Q Consensus 91 ~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~---------~~l~~~~~V~~vPTll 161 (166)
++.++.+ .++..+++||..-|+.|+.+.|++..++++|+ +.++.|++|.... ...++++||..+|+++
T Consensus 142 ~~~i~~l--a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~ 218 (256)
T TIGR02739 142 EKAIQQL--SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALY 218 (256)
T ss_pred HHHHHHH--HhceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEE
Confidence 3444443 23488999999999999999999999999995 7777777776522 4578999999999999
Q ss_pred EcCC
Q 031078 162 SPSF 165 (166)
Q Consensus 162 ~~d~ 165 (166)
+++.
T Consensus 219 Lv~~ 222 (256)
T TIGR02739 219 LVNP 222 (256)
T ss_pred EEEC
Confidence 8864
No 138
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.29 E-value=1.9e-06 Score=65.56 Aligned_cols=43 Identities=7% Similarity=0.111 Sum_probs=37.0
Q ss_pred CCCcEEEEEE-cCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCC
Q 031078 100 DSLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ 142 (166)
Q Consensus 100 ~~k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~ 142 (166)
.+|.+||+|| +.||+.|....+.+.++.+++. ++.++.|.+|.
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 3579999999 8999999999999999998885 48888887765
No 139
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=6.2e-07 Score=71.02 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=67.2
Q ss_pred CeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceE
Q 031078 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVS 159 (166)
Q Consensus 80 ~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPT 159 (166)
.++.+...++| +.. .++..+++||+.||..|+.+..+++.+++..+++.+++++.++. +.++..+.|.++|.
T Consensus 2 ~v~~i~~~~~f---~~~---~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~--~eis~~~~v~~vp~ 73 (227)
T KOG0911|consen 2 TVQFIVFQEQF---LDQ---KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEF--PEISNLIAVEAVPY 73 (227)
T ss_pred CceeehhHHHH---HHh---ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhh--hHHHHHHHHhcCce
Confidence 45677777888 221 67899999999999999999999999999988899999999997 99999999999999
Q ss_pred EEEc
Q 031078 160 SLSP 163 (166)
Q Consensus 160 ll~~ 163 (166)
+.+.
T Consensus 74 ~~~~ 77 (227)
T KOG0911|consen 74 FVFF 77 (227)
T ss_pred eeee
Confidence 8876
No 140
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.24 E-value=2.5e-06 Score=62.10 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=37.2
Q ss_pred CCCcEEEEEEcCCChh-HHhHhHHHHHHHHhCCC-----cEEEEEECCC
Q 031078 100 DSLPAIFYFTAAWCGP-CKFIWPVIGELSAKHPH-----VTTYKIDIDQ 142 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~-Ck~~~p~l~~la~~~~~-----v~~~~vDid~ 142 (166)
.++++||+||++||++ |....+.+.++.+++.+ +.++.|..|.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4679999999999998 99999999999888752 8888888764
No 141
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.22 E-value=4.4e-06 Score=60.56 Aligned_cols=43 Identities=9% Similarity=0.216 Sum_probs=37.0
Q ss_pred CCCcEEEEEE-cCCChhHHhHhHHHHHHHHhC--CCcEEEEEECCC
Q 031078 100 DSLPAIFYFT-AAWCGPCKFIWPVIGELSAKH--PHVTTYKIDIDQ 142 (166)
Q Consensus 100 ~~k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~--~~v~~~~vDid~ 142 (166)
.+++++|+|| +.||+.|....+.+.++.+++ .++.++.|..|.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4679999999 789999999999999999886 358888888764
No 142
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.21 E-value=5.4e-06 Score=54.91 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=42.7
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc---hHHHHHhCCCCcceEEEE
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG---LESTLSKLNISAVVSSLS 162 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~---~~~l~~~~~V~~vPTll~ 162 (166)
|+.|+++||+.|+.+...++++... +.++.+|.+.++ ...+.+..++.++|++++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~ 59 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK---PAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI 59 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC---cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 5789999999999999999998653 577777877542 123556678999999865
No 143
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.21 E-value=9e-06 Score=53.96 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=42.5
Q ss_pred EEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 107 ~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
.+++++|+.|..+...++++.++++ +.+-.+|+... +++ .+|||.++|++++
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~--~~~-~~ygv~~vPalvI 55 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDF--EEI-EKYGVMSVPALVI 55 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTH--HHH-HHTT-SSSSEEEE
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCH--HHH-HHcCCCCCCEEEE
Confidence 3478889999999999999999984 77777777443 666 9999999999966
No 144
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.19 E-value=8.7e-06 Score=65.98 Aligned_cols=72 Identities=8% Similarity=0.073 Sum_probs=55.4
Q ss_pred HHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcch---------HHHHHhCCCCcceEEE
Q 031078 91 NSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGL---------ESTLSKLNISAVVSSL 161 (166)
Q Consensus 91 ~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~---------~~l~~~~~V~~vPTll 161 (166)
++.|+.+. ++..+++||.+-|+.|+.+.|++..++++|+ +.++.|.+|..+. ...+++++|..+|+++
T Consensus 135 ~~~i~~la--~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~ 211 (248)
T PRK13703 135 RQAIAKLA--EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALM 211 (248)
T ss_pred HHHHHHHH--hcceEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEE
Confidence 34454433 3488999999999999999999999999994 6666666664221 3466899999999999
Q ss_pred EcCC
Q 031078 162 SPSF 165 (166)
Q Consensus 162 ~~d~ 165 (166)
+++.
T Consensus 212 Lv~~ 215 (248)
T PRK13703 212 LVDP 215 (248)
T ss_pred EEEC
Confidence 8764
No 145
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=1.1e-05 Score=58.64 Aligned_cols=77 Identities=13% Similarity=0.245 Sum_probs=68.0
Q ss_pred EecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceEEE
Q 031078 83 VIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVSSL 161 (166)
Q Consensus 83 ~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPTll 161 (166)
.+.+.++.++++.. ...+.+||-|.-.|-+.|..|...+.+++++..+ +.++-+|+|+- +++.+-|++...||++
T Consensus 7 ~L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV--~~~~~~~~l~~p~tvm 82 (142)
T KOG3414|consen 7 TLHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEV--PDFVKMYELYDPPTVM 82 (142)
T ss_pred ccccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchh--hhhhhhhcccCCceEE
Confidence 45678888888763 4678999999999999999999999999999888 88999999976 8999999999999977
Q ss_pred Ec
Q 031078 162 SP 163 (166)
Q Consensus 162 ~~ 163 (166)
++
T Consensus 83 fF 84 (142)
T KOG3414|consen 83 FF 84 (142)
T ss_pred EE
Confidence 64
No 146
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.16 E-value=5.7e-06 Score=61.47 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=36.2
Q ss_pred CCCcEEEEEEcC-CChhHHhHhHHHHHHHHhCC--CcEEEEEECCCc
Q 031078 100 DSLPAIFYFTAA-WCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQK 143 (166)
Q Consensus 100 ~~k~vvV~F~a~-WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~ 143 (166)
.+|++||+||+. ||+.|....+.+.++.+++. ++.++.|..|..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~ 75 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKP 75 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 457999999986 68889999999999988874 488888887653
No 147
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.10 E-value=6e-06 Score=60.64 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=35.6
Q ss_pred CcEEEEEE-cCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCC
Q 031078 102 LPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ 142 (166)
Q Consensus 102 k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~ 142 (166)
++++|.|| ++||+.|....+.++++.+++. ++.++.|..|.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 67888887 9999999999999999998885 48888888765
No 148
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.08 E-value=1.4e-05 Score=62.19 Aligned_cols=65 Identities=11% Similarity=0.167 Sum_probs=50.5
Q ss_pred CCCcEEEEEE-cCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCCcc-----------------------hHHHHHhCC
Q 031078 100 DSLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-----------------------LESTLSKLN 153 (166)
Q Consensus 100 ~~k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~~-----------------------~~~l~~~~~ 153 (166)
.+|++|++|| +.||+.|....+.+.++.+++. ++.++.|..|... ...++++|+
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 4578999999 9999999999999999999885 4888888876531 145677777
Q ss_pred C----Ccc--eEEEEcC
Q 031078 154 I----SAV--VSSLSPS 164 (166)
Q Consensus 154 V----~~v--PTll~~d 164 (166)
+ .++ |+.+++|
T Consensus 110 v~~~~~g~~~r~tfIID 126 (187)
T PRK10382 110 NMREDEGLADRATFVVD 126 (187)
T ss_pred CCcccCCceeeEEEEEC
Confidence 7 345 7777776
No 149
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.07 E-value=1.8e-05 Score=49.84 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=41.3
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc--chHHHHHhCCCCcceEEEEc
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK--GLESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~--~~~~l~~~~~V~~vPTll~~ 163 (166)
|+.|+.+||++|+.....|++. ++.+..+|++.. ....+.+..+..++|++++-
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~ 56 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFID 56 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEET
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEEC
Confidence 5789999999999999988543 477888888876 12334444599999999973
No 150
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2.7e-05 Score=58.79 Aligned_cols=70 Identities=11% Similarity=0.172 Sum_probs=54.8
Q ss_pred hhhcCCCcEEEEEEcCCChhHHhHhHHH---HHHHHhCCC-cEEEEEECCCc--------------chHHHHHhCCCCcc
Q 031078 96 KVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHPH-VTTYKIDIDQK--------------GLESTLSKLNISAV 157 (166)
Q Consensus 96 ~~~~~~k~vvV~F~a~WC~~Ck~~~p~l---~~la~~~~~-v~~~~vDid~~--------------~~~~l~~~~~V~~v 157 (166)
.+..+++..+++|-...|..|..+...+ +++.+-+.+ +.++.+|+... ...+++++|+|++.
T Consensus 37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 3566889999999999999999998766 444444443 77887777532 12589999999999
Q ss_pred eEEEEcCC
Q 031078 158 VSSLSPSF 165 (166)
Q Consensus 158 PTll~~d~ 165 (166)
||++++|.
T Consensus 117 PtfvFfdk 124 (182)
T COG2143 117 PTFVFFDK 124 (182)
T ss_pred ceEEEEcC
Confidence 99999984
No 151
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.04 E-value=2e-05 Score=50.07 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=41.1
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc--hHHHHHhCCCCcceEEEE
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVVSSLS 162 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~--~~~l~~~~~V~~vPTll~ 162 (166)
|+.|+++||++|+.+...+++.. +.+..+|++.+. ...+.+..+...+|++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 56799999999999999998774 667788888762 133455568889999875
No 152
>PHA03050 glutaredoxin; Provisional
Probab=98.03 E-value=1.6e-05 Score=56.54 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=41.6
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc--c---hHHHHHhCCCCcceEEEEcC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK--G---LESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~--~---~~~l~~~~~V~~vPTll~~d 164 (166)
|+.|..+|||+|++....|++..-+++++.. +|+++. + ...+.+..|.+.+|++++-+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~--i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g 77 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEI--VDIKEFKPENELRDYFEQITGGRTVPRIFFGK 77 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEE--EECCCCCCCHHHHHHHHHHcCCCCcCEEEECC
Confidence 6779999999999999999888655444444 455541 1 13455667889999997744
No 153
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.00 E-value=6.8e-05 Score=54.99 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=62.3
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcceEE
Q 031078 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVVSS 160 (166)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~vPTl 160 (166)
..+.+..+.++++.. ..++.++|-|.-.|-+.|..+...+.+++++.++ ..++.+|+++- +++.+.|++. .|..
T Consensus 3 ~~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~V--pdfn~~yel~-dP~t 77 (133)
T PF02966_consen 3 PHLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEV--PDFNQMYELY-DPCT 77 (133)
T ss_dssp EEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTT--HCCHHHTTS--SSEE
T ss_pred cccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccc--hhhhcccccC-CCeE
Confidence 356788899998863 5778999999999999999999999999999888 89999999986 8999999998 7763
Q ss_pred E
Q 031078 161 L 161 (166)
Q Consensus 161 l 161 (166)
+
T Consensus 78 v 78 (133)
T PF02966_consen 78 V 78 (133)
T ss_dssp E
T ss_pred E
Confidence 3
No 154
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.00 E-value=2.9e-05 Score=51.75 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=43.3
Q ss_pred CCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc-hHHHHHhCCCCcceEEEEc
Q 031078 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-LESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 101 ~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~-~~~l~~~~~V~~vPTll~~ 163 (166)
.+.-|+.|+.+||++|++....|++. ++.+..+|++++. ...+.+..+...+|.+++-
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~ 64 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFIG 64 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEEC
Confidence 34557789999999999999999753 4666677877652 2345556789999999763
No 155
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.00 E-value=2.7e-05 Score=68.98 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=55.6
Q ss_pred CcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 102 LPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 102 k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
..-+-.|++++|++|......+++++...+++.+-.+|.... ++++++|+|.++|++++-+
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~--~~~~~~~~v~~VP~~~i~~ 177 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALF--QDEVEARNIMAVPTVFLNG 177 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhC--HhHHHhcCCcccCEEEECC
Confidence 355888999999999999999999999999999999999887 9999999999999998743
No 156
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.99 E-value=2.9e-05 Score=69.45 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=54.8
Q ss_pred CcE-EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 102 LPA-IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 102 k~v-vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
+++ +-.|.++||+.|......+++++.+.|++..-.+|+... ++++++|+|.++|++++-+
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~--~~~~~~~~v~~vP~~~i~~ 537 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF--PDLKDEYGIMSVPAIVVDD 537 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc--HHHHHhCCceecCEEEECC
Confidence 454 556689999999999999999999999999999999998 9999999999999998754
No 157
>PRK15000 peroxidase; Provisional
Probab=97.96 E-value=2.3e-05 Score=61.46 Aligned_cols=43 Identities=9% Similarity=0.166 Sum_probs=37.6
Q ss_pred CCCcEEEEEEcC-CChhHHhHhHHHHHHHHhCC--CcEEEEEECCC
Q 031078 100 DSLPAIFYFTAA-WCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ 142 (166)
Q Consensus 100 ~~k~vvV~F~a~-WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~ 142 (166)
.++.+|++||+. ||+.|....+.+.++.+++. ++.++.|.+|.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~ 78 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDS 78 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 467999999995 99999999999999999886 48888888874
No 158
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.93 E-value=1.5e-06 Score=69.30 Aligned_cols=75 Identities=17% Similarity=0.295 Sum_probs=63.8
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCCcchHHHHHhCCCCcce
Q 031078 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKGLESTLSKLNISAVV 158 (166)
Q Consensus 81 v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~~~~~l~~~~~V~~vP 158 (166)
-+...+.++|...+. .-++|.|+++||+.|+...+.++.++.--. ++++.+||+..+ +.+.-+|-|...|
T Consensus 25 ~~~~~~eenw~~~l~------gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n--pgLsGRF~vtaLp 96 (248)
T KOG0913|consen 25 KLTRIDEENWKELLT------GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN--PGLSGRFLVTALP 96 (248)
T ss_pred eeEEecccchhhhhc------hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec--cccceeeEEEecc
Confidence 455566799999875 378999999999999999999999976443 499999999998 8999999999999
Q ss_pred EEEEc
Q 031078 159 SSLSP 163 (166)
Q Consensus 159 Tll~~ 163 (166)
|+.-.
T Consensus 97 tIYHv 101 (248)
T KOG0913|consen 97 TIYHV 101 (248)
T ss_pred eEEEe
Confidence 98753
No 159
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.91 E-value=4.4e-05 Score=49.89 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=39.6
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc-hHHHHHhCCCCcceEEEE
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-LESTLSKLNISAVVSSLS 162 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~-~~~l~~~~~V~~vPTll~ 162 (166)
|..|..+||+.|+.....|++. ++.+..+|++++. ..+...+.|...+|++++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 3568899999999999999763 5777788888761 122234458889999877
No 160
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.90 E-value=3.4e-05 Score=60.47 Aligned_cols=42 Identities=10% Similarity=0.106 Sum_probs=34.4
Q ss_pred CCcEEE-EEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCC
Q 031078 101 SLPAIF-YFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ 142 (166)
Q Consensus 101 ~k~vvV-~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~ 142 (166)
++.+|+ .||++||+.|....+.+.++.+++. ++.++.|.+|.
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~ 71 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDS 71 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 455554 6899999999999999999988875 48888887774
No 161
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.86 E-value=9e-05 Score=49.93 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=41.6
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc-hHHHHHhCCCCcceEEEEcC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-LESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~-~~~l~~~~~V~~vPTll~~d 164 (166)
|+.|..+||++|+.....|++ .++.|..+|++++. ..+..+..+...+|++++-+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~ 58 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGD 58 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECC
Confidence 677899999999999998865 36888889998762 12223456788999998744
No 162
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.79 E-value=7.8e-05 Score=60.92 Aligned_cols=43 Identities=12% Similarity=0.097 Sum_probs=35.9
Q ss_pred CCCcEEEEEE-cCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCC
Q 031078 100 DSLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ 142 (166)
Q Consensus 100 ~~k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~ 142 (166)
.++.+|++|| +.||+.|....+.|.++.+++. |+.++.|.+|.
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3467777777 8999999999999999998885 58888888775
No 163
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.79 E-value=0.00014 Score=48.42 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=45.2
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcc------------------------------hHHHHHhCC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKG------------------------------LESTLSKLN 153 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~------------------------------~~~l~~~~~ 153 (166)
|+.|+..+|++|..+.+.++++.+.+++ +.+....+.-.+ ....+.++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999765554 666655442211 134678899
Q ss_pred CCcceEEEEcC
Q 031078 154 ISAVVSSLSPS 164 (166)
Q Consensus 154 V~~vPTll~~d 164 (166)
+.++||+++.+
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999876
No 164
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.73 E-value=0.00017 Score=46.89 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=39.6
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc--hHHHHHhCCCC-cceEEEEc
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNIS-AVVSSLSP 163 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~--~~~l~~~~~V~-~vPTll~~ 163 (166)
|+.|+.+||+.|+.....|++. ++.+..+|++.+. ...+.+..+.. .+|++++-
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC
Confidence 5678999999999999999763 4667777887651 12334456766 89998764
No 165
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.71 E-value=0.00017 Score=46.87 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=40.5
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc-hHHHHHhCCCCcceEEEEc
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-LESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~-~~~l~~~~~V~~vPTll~~ 163 (166)
|+.|..+||+.|++....|++. ++.+..+|++++. ...+.+..+...+|.+++-
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~ 57 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQVFID 57 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeEEEC
Confidence 6779999999999999888853 5667777887653 1234445688999998653
No 166
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.71 E-value=0.0002 Score=46.72 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=41.8
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc--hHHHHHhCCCCcceEEEEcC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~--~~~l~~~~~V~~vPTll~~d 164 (166)
|+.|+.+||+.|++....|++. ++.+..+|+++.. ...+.+..+...+|++++-+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~ 59 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQIFFNE 59 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECC
Confidence 5678999999999999999873 4677778887752 13455666778999997643
No 167
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.70 E-value=0.00026 Score=50.16 Aligned_cols=81 Identities=9% Similarity=0.204 Sum_probs=57.4
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcc--hHHHHHhCCC-Ccc
Q 031078 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKG--LESTLSKLNI-SAV 157 (166)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~--~~~l~~~~~V-~~v 157 (166)
..+++.++|+++++. ...++++|+=++++|+-..+....|++.....++ +.++.+|+-+.. ...++.+||| +.-
T Consensus 2 ~~L~t~eql~~i~~~--S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEE--SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred CccCCHHHHHHHHHh--cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 468899999999875 3567888877999999999999999999988887 999999998761 1357899999 578
Q ss_pred eEEEEcC
Q 031078 158 VSSLSPS 164 (166)
Q Consensus 158 PTll~~d 164 (166)
|.+++++
T Consensus 80 PQ~ili~ 86 (105)
T PF11009_consen 80 PQVILIK 86 (105)
T ss_dssp SEEEEEE
T ss_pred CcEEEEE
Confidence 9888775
No 168
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.70 E-value=0.00016 Score=64.06 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=55.4
Q ss_pred CcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 102 LPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 102 k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
..-+-.|+.+.|++|......+++++.+.|++..-.+|.... ++++++|+|.++|++++-+
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~--~~~~~~~~v~~VP~~~i~~ 178 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALF--QDEVEALGIQGVPAVFLNG 178 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhC--HHHHHhcCCcccCEEEECC
Confidence 456888999999999999999999999999999888888887 9999999999999998743
No 169
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.70 E-value=6.3e-05 Score=49.75 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=39.0
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc--chHHHHHhCCCCcceEEEEc
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK--GLESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~--~~~~l~~~~~V~~vPTll~~ 163 (166)
|+.|+.+||+.|+.....+++. ++.+..+|++.+ ....+.+..+...+|++++-
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~ 56 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIG 56 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEEC
Confidence 4678999999999999999864 355556666654 12344555688899998653
No 170
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.69 E-value=0.00012 Score=57.35 Aligned_cols=40 Identities=15% Similarity=0.279 Sum_probs=34.5
Q ss_pred cEEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCC
Q 031078 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ 142 (166)
Q Consensus 103 ~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~ 142 (166)
.+++.||++||+.|....+.+.++.+++. ++.++.|.+|.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 45668999999999999999999998885 48888888775
No 171
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.69 E-value=0.00024 Score=56.96 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=47.5
Q ss_pred cCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCC------------------------------------
Q 031078 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ------------------------------------ 142 (166)
Q Consensus 99 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~------------------------------------ 142 (166)
.+++.+|+.|..+.||+|+++.+.++++.+. ++++..+....
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 4677889999999999999999999888542 33333221100
Q ss_pred ------cchHHHHHhCCCCcceEEEEcCC
Q 031078 143 ------KGLESTLSKLNISAVVSSLSPSF 165 (166)
Q Consensus 143 ------~~~~~l~~~~~V~~vPTll~~d~ 165 (166)
+.+.++++++||.++||+++.|+
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv~~~G 211 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIVLSNG 211 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEEEcCC
Confidence 01367899999999999998664
No 172
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.68 E-value=9.3e-05 Score=58.73 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=35.9
Q ss_pred CCc-EEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCC
Q 031078 101 SLP-AIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ 142 (166)
Q Consensus 101 ~k~-vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~ 142 (166)
++. +++.|+++||+.|....+.+.++.+++. ++.++.|.+|.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~ 72 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ 72 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 445 4678999999999999999999999884 58888888876
No 173
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.67 E-value=0.00013 Score=51.05 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=37.1
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc-hH----HHHHhCCCCcceEEEEc
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-LE----STLSKLNISAVVSSLSP 163 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~-~~----~l~~~~~V~~vPTll~~ 163 (166)
|+.|..+||++|+++...|++.. +.+..+|+|+.. .. .+.+..+...+|.+++-
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~ 68 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG-----VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVG 68 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEEC
Confidence 66799999999999999888763 334455665431 12 23344578899998653
No 174
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.65 E-value=0.00021 Score=56.61 Aligned_cols=86 Identities=15% Similarity=0.164 Sum_probs=74.1
Q ss_pred CCCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCC
Q 031078 76 DGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNIS 155 (166)
Q Consensus 76 ~~~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~ 155 (166)
+.-..|.++.+.++|-+.+.+.. ....++|..|-+.-..|..+...+.-|+.+||.++|+++-...- ...++|...
T Consensus 135 p~~~~V~El~~gkqfld~idke~-ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~---gas~~F~~n 210 (273)
T KOG3171|consen 135 PRYGFVYELETGKQFLDTIDKEL-KSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNT---GASDRFSLN 210 (273)
T ss_pred CccceEEEeccchhHHHHHhccc-ceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccc---cchhhhccc
Confidence 34568999999999999987532 34577889999999999999999999999999999999987763 567899999
Q ss_pred cceEEEEcCC
Q 031078 156 AVVSSLSPSF 165 (166)
Q Consensus 156 ~vPTll~~d~ 165 (166)
++||++++++
T Consensus 211 ~lP~LliYkg 220 (273)
T KOG3171|consen 211 VLPTLLIYKG 220 (273)
T ss_pred CCceEEEeeC
Confidence 9999999875
No 175
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.63 E-value=0.00016 Score=57.41 Aligned_cols=43 Identities=7% Similarity=0.114 Sum_probs=35.9
Q ss_pred CCcEE-EEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCCc
Q 031078 101 SLPAI-FYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQK 143 (166)
Q Consensus 101 ~k~vv-V~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~ 143 (166)
+|.+| +.|+++||+.|....+.|.++++++. ++.++.|.+|..
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~ 78 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSN 78 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 45555 58899999999999999999999885 588988888754
No 176
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.60 E-value=0.00011 Score=57.07 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=24.1
Q ss_pred cCCCcEEEEEEcCCChhHHhHhHHHHH
Q 031078 99 DDSLPAIFYFTAAWCGPCKFIWPVIGE 125 (166)
Q Consensus 99 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~ 125 (166)
.+++..|+.|+.++|++|+.+.+.+.+
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 356899999999999999999999876
No 177
>PRK13189 peroxiredoxin; Provisional
Probab=97.59 E-value=0.00017 Score=57.45 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=34.6
Q ss_pred CCc-EEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCC
Q 031078 101 SLP-AIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ 142 (166)
Q Consensus 101 ~k~-vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~ 142 (166)
++. +|+.||++||+.|....+.+.++++++. ++.++.|.+|.
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~ 79 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ 79 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 454 4557789999999999999999998885 58888888775
No 178
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.58 E-value=0.00021 Score=52.12 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=35.0
Q ss_pred cCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEEC
Q 031078 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDI 140 (166)
Q Consensus 99 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDi 140 (166)
.+.+.+|+.|+..+|++|+.+.+.+.++.++++++.++..+.
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 356789999999999999999999999988888766665544
No 179
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.51 E-value=0.00091 Score=50.35 Aligned_cols=77 Identities=12% Similarity=0.157 Sum_probs=63.6
Q ss_pred eEEecCHHHHHHHHhhhhcCCCc-EEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCC--c
Q 031078 81 ILVIESGEEFNSSLGKVKDDSLP-AIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNIS--A 156 (166)
Q Consensus 81 v~~i~s~~~f~~~l~~~~~~~k~-vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~--~ 156 (166)
+.++ +.+++..+.. .+++ +++.|..........+...+.++++++.+ +.|+.+|++.. ..+++.+|+. .
T Consensus 79 v~~~-t~~n~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~--~~~~~~~~i~~~~ 151 (184)
T PF13848_consen 79 VPEL-TPENFEKLFS----SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDF--PRLLKYFGIDEDD 151 (184)
T ss_dssp CEEE-STTHHHHHHS----TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTT--HHHHHHTTTTTSS
T ss_pred cccc-chhhHHHHhc----CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHh--HHHHHHcCCCCcc
Confidence 3444 4567888764 4444 78888877888899999999999999987 99999999976 8899999998 9
Q ss_pred ceEEEEcC
Q 031078 157 VVSSLSPS 164 (166)
Q Consensus 157 vPTll~~d 164 (166)
+|++++++
T Consensus 152 ~P~~vi~~ 159 (184)
T PF13848_consen 152 LPALVIFD 159 (184)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999887
No 180
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.50 E-value=0.00037 Score=54.33 Aligned_cols=44 Identities=7% Similarity=0.126 Sum_probs=36.8
Q ss_pred CCCcEEEEEEc-CCChhHHhHhHHHHHHHHhCC--CcEEEEEECCCc
Q 031078 100 DSLPAIFYFTA-AWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQK 143 (166)
Q Consensus 100 ~~k~vvV~F~a-~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~ 143 (166)
.++.++|+||+ .||+.|....+.+.++.+++. ++.++.|.+|..
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 35789999995 889999999999999998886 588888888743
No 181
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.48 E-value=0.0009 Score=46.52 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=40.3
Q ss_pred CcEEEEEE----cCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc--hHHHHHhCCCCcceEEEEcC
Q 031078 102 LPAIFYFT----AAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 102 k~vvV~F~----a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~--~~~l~~~~~V~~vPTll~~d 164 (166)
..++|+-. .+||++|+.....|++. ++.+..+|++++. ...+.+..|...+|.+++-+
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g 75 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKG 75 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECC
Confidence 45666554 38999999999999875 3567778886541 12344556778999997643
No 182
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.43 E-value=0.00069 Score=45.40 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=48.1
Q ss_pred EEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 104 vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
.|+.|..+.|+-|..+...++++..+.+ +.+..||++++ +.+..+|+. .+|.+.+-+
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d--~~l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDED--PELFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTT--HHHHHHSCT-STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCC--HHHHHHhcC-CCCEEEEcC
Confidence 3788999999999999999999866654 89999999987 889999997 599988765
No 183
>PRK10638 glutaredoxin 3; Provisional
Probab=97.40 E-value=0.00069 Score=45.36 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=39.6
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc--hHHHHHhCCCCcceEEEE
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVVSSLS 162 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~--~~~l~~~~~V~~vPTll~ 162 (166)
|+.|..+||++|+.....+++. ++.+..+|++++. ...+.+..+...+|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5678899999999999999874 4556667887652 134456668889999865
No 184
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0009 Score=44.93 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=40.3
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc--h-HHHHHhC-CCCcceEEEEcC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--L-ESTLSKL-NISAVVSSLSPS 164 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~--~-~~l~~~~-~V~~vPTll~~d 164 (166)
++.|..+||++|++....|++. ++.+..+|++... . .+..++. |.+.+|++++-+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~ 61 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGG 61 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECC
Confidence 6778999999999999998843 4566666666543 1 2444555 789999999865
No 185
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.29 E-value=0.00086 Score=54.41 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=47.1
Q ss_pred cCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEEC------------------C------------------C
Q 031078 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDI------------------D------------------Q 142 (166)
Q Consensus 99 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDi------------------d------------------~ 142 (166)
.+++.+|+.|..+.|++|+++...+.++.+. .++++..+.+ | .
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~ 193 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP 193 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence 3567889999999999999999998887654 3344443321 0 0
Q ss_pred ----c--------chHHHHHhCCCCcceEEEEcC
Q 031078 143 ----K--------GLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 143 ----~--------~~~~l~~~~~V~~vPTll~~d 164 (166)
. .+.++++++||+++|++++.|
T Consensus 194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d 227 (251)
T PRK11657 194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYMD 227 (251)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 0 124578899999999999986
No 186
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.14 E-value=0.00088 Score=45.75 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=38.9
Q ss_pred CcEEEEEEc----CCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc--hHHHHHhCCCCcceEEEEc
Q 031078 102 LPAIFYFTA----AWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 102 k~vvV~F~a----~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~--~~~l~~~~~V~~vPTll~~ 163 (166)
++++|+-.. +||++|+.....|++.. +.|..+|++++. ...+.+..+...+|++++-
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-----i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~ 70 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLG-----VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVN 70 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcC-----CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 456665443 79999999999998863 556666776541 1234455688899998653
No 187
>PRK10824 glutaredoxin-4; Provisional
Probab=96.94 E-value=0.0026 Score=45.81 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=37.1
Q ss_pred CcEEEEEEc----CCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc-ch-HHHHHhCCCCcceEEEEc
Q 031078 102 LPAIFYFTA----AWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK-GL-ESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 102 k~vvV~F~a----~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~-~~-~~l~~~~~V~~vPTll~~ 163 (166)
.++||+-.. +||++|+.....|+++. +.+..+|++++ +. ..+.+.-+...+|.+++-
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~ 77 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACG-----ERFAYVDILQNPDIRAELPKYANWPTFPQLWVD 77 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcC-----CCceEEEecCCHHHHHHHHHHhCCCCCCeEEEC
Confidence 355655443 69999999999998873 33444566554 11 223344578899998874
No 188
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.81 E-value=0.002 Score=45.79 Aligned_cols=77 Identities=8% Similarity=0.084 Sum_probs=52.9
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCC--ChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCCcc
Q 031078 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAW--CGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAV 157 (166)
Q Consensus 81 v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~W--C~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~~v 157 (166)
...++ .+++++.+. .+...+++|..+. |+.|....-++.||.+.+++ +....++-+.+ ..+..+|++...
T Consensus 11 ~~~vd-~~~ld~~l~----~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e--~~L~~r~gv~~~ 83 (107)
T PF07449_consen 11 WPRVD-ADTLDAFLA----APGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAE--RALAARFGVRRW 83 (107)
T ss_dssp EEEE--CCCHHHHHH----CCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHH--HHHHHHHT-TSS
T ss_pred Ceeec-hhhHHHHHh----CCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhH--HHHHHHhCCccC
Confidence 34444 567777765 3445555444332 45555566689999999998 77777775555 899999999999
Q ss_pred eEEEEcC
Q 031078 158 VSSLSPS 164 (166)
Q Consensus 158 PTll~~d 164 (166)
|+++++.
T Consensus 84 PaLvf~R 90 (107)
T PF07449_consen 84 PALVFFR 90 (107)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 9999975
No 189
>PTZ00062 glutaredoxin; Provisional
Probab=96.79 E-value=0.008 Score=47.46 Aligned_cols=70 Identities=9% Similarity=0.086 Sum_probs=44.1
Q ss_pred HHHHHHhhhhcCCCcEEEEEE----cCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc-h-HHHHHhCCCCcceEEEE
Q 031078 89 EFNSSLGKVKDDSLPAIFYFT----AAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-L-ESTLSKLNISAVVSSLS 162 (166)
Q Consensus 89 ~f~~~l~~~~~~~k~vvV~F~----a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~-~-~~l~~~~~V~~vPTll~ 162 (166)
+..+.+.++-+. ++++|+-. .+||++|+.+...|++. ++.+..+|+++.. . ..+.+..+...+|.+++
T Consensus 101 ~~~~~v~~li~~-~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 101 DTVEKIERLIRN-HKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHHHHHHHHhc-CCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 344444444444 45555444 37999999999888865 4667778887651 1 22334457788999886
Q ss_pred cC
Q 031078 163 PS 164 (166)
Q Consensus 163 ~d 164 (166)
-+
T Consensus 175 ~G 176 (204)
T PTZ00062 175 NG 176 (204)
T ss_pred CC
Confidence 43
No 190
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.74 E-value=0.0096 Score=46.91 Aligned_cols=81 Identities=12% Similarity=0.166 Sum_probs=62.6
Q ss_pred CCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCc
Q 031078 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISA 156 (166)
Q Consensus 77 ~~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~ 156 (166)
.-+.|..|.. .+|...+.++ ..+-.|||..|...-+-|+-+...++.++.+||+++|+++-...+ ...|-=..
T Consensus 89 kfG~V~~ISg-~dyv~EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c-----IpNYPe~n 161 (240)
T KOG3170|consen 89 KFGEVFPISG-PDYVKEVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC-----IPNYPESN 161 (240)
T ss_pred cccceeeccc-hHHHHHHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc-----cCCCcccC
Confidence 3456777776 4555555443 356788999999999999999999999999999999999977765 23565667
Q ss_pred ceEEEEcC
Q 031078 157 VVSSLSPS 164 (166)
Q Consensus 157 vPTll~~d 164 (166)
+||++++-
T Consensus 162 lPTl~VY~ 169 (240)
T KOG3170|consen 162 LPTLLVYH 169 (240)
T ss_pred CCeEEEee
Confidence 89998863
No 191
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.74 E-value=0.0084 Score=53.72 Aligned_cols=79 Identities=8% Similarity=0.122 Sum_probs=62.3
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEE
Q 031078 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSL 161 (166)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll 161 (166)
+.-...+++.+.+.+. .+...++.|+.+-|..|..+...++++++.-+.+++...|.+++ .+++++|+|...|++.
T Consensus 349 l~~~~~~~l~~~~~~l--~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~--~~~~~~~~v~~~P~~~ 424 (555)
T TIGR03143 349 LDDSLRQQLVGIFGRL--ENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEE--PESETLPKITKLPTVA 424 (555)
T ss_pred cCHHHHHHHHHHHHhc--CCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccc--hhhHhhcCCCcCCEEE
Confidence 3334455666666642 33356778888899999999999999997766788888888877 7899999999999999
Q ss_pred EcC
Q 031078 162 SPS 164 (166)
Q Consensus 162 ~~d 164 (166)
+.+
T Consensus 425 i~~ 427 (555)
T TIGR03143 425 LLD 427 (555)
T ss_pred EEe
Confidence 874
No 192
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=96.71 E-value=0.024 Score=41.44 Aligned_cols=80 Identities=14% Similarity=0.186 Sum_probs=59.6
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcC--CCh-hH-HhHhHHHHHHHHhCCC--cEEEEEECCCcchHHHHHhC
Q 031078 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAA--WCG-PC-KFIWPVIGELSAKHPH--VTTYKIDIDQKGLESTLSKL 152 (166)
Q Consensus 79 ~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~--WC~-~C-k~~~p~l~~la~~~~~--v~~~~vDid~~~~~~l~~~~ 152 (166)
..++++++.+.+++.-.. ++..+|.|.-. -|. .+ ..+...+.+++++|.+ +.|+.+|.++. ..+.+.|
T Consensus 2 ~~~~~l~~~~~~~~~C~~----~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~--~~~~~~f 75 (130)
T cd02983 2 PEIIELTSEDVFEETCEE----KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ--LDLEEAL 75 (130)
T ss_pred CceEEecCHHHHHhhccC----CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc--HHHHHHc
Confidence 467889998888887642 34556656432 132 23 4567889999999975 89999999998 6799999
Q ss_pred CCC--cceEEEEcC
Q 031078 153 NIS--AVVSSLSPS 164 (166)
Q Consensus 153 ~V~--~vPTll~~d 164 (166)
||. ++|++++++
T Consensus 76 gl~~~~~P~v~i~~ 89 (130)
T cd02983 76 NIGGFGYPAMVAIN 89 (130)
T ss_pred CCCccCCCEEEEEe
Confidence 995 599998875
No 193
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.68 E-value=0.0049 Score=53.41 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=40.5
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcch-HHHHHh---------CCCCcceEEEEcC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGL-ESTLSK---------LNISAVVSSLSPS 164 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~-~~l~~~---------~~V~~vPTll~~d 164 (166)
|+.|..+||++|++....+++. |+.+..+|+|+... .++.++ .|.+.+|++++-+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~ 68 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGD 68 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECC
Confidence 7789999999999999888874 57777888886521 122122 4788999998754
No 194
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.013 Score=41.42 Aligned_cols=54 Identities=15% Similarity=0.253 Sum_probs=37.7
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHH----HHhCCCCcceEEEE
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLEST----LSKLNISAVVSSLS 162 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l----~~~~~V~~vPTll~ 162 (166)
||.|..+||+.|+.+...|.++ -.+.+++.+|-+.++ .++ .+.-+-+.+|.+++
T Consensus 16 VVifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g-~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDG-SEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred EEEEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCc-HHHHHHHHHhcCCCCCCEEEE
Confidence 5558999999999988888772 123677778777653 233 23335678999886
No 195
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.42 E-value=0.0064 Score=45.55 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=33.5
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEE
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKID 139 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vD 139 (166)
+++..|+.|+...|++|+.+.+.+.++.+++++ +.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcC
Confidence 467899999999999999999999999998875 5554333
No 196
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.023 Score=47.39 Aligned_cols=85 Identities=18% Similarity=0.260 Sum_probs=67.4
Q ss_pred CCCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcC----CChhHHhHhHHHHHHHHhC----C-----CcEEEEEECCC
Q 031078 76 DGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAA----WCGPCKFIWPVIGELSAKH----P-----HVTTYKIDIDQ 142 (166)
Q Consensus 76 ~~~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~----WC~~Ck~~~p~l~~la~~~----~-----~v~~~~vDid~ 142 (166)
..+.+++..++ +.|...+.. ...+--.+++|.|. -|.-|+....++.-++..+ + .+-|..||.|+
T Consensus 37 ts~~~VI~~n~-d~~~~~v~~-~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e 114 (331)
T KOG2603|consen 37 TSESGVIRMND-DKFSKFVRP-PPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE 114 (331)
T ss_pred cCCCCeEEecC-cchhhhccC-CCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc
Confidence 45667777775 889999873 33444577778775 5999999999999888754 2 26789999999
Q ss_pred cchHHHHHhCCCCcceEEEEcC
Q 031078 143 KGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 143 ~~~~~l~~~~~V~~vPTll~~d 164 (166)
. +++.+.+++..+|+++.+.
T Consensus 115 ~--p~~Fq~l~ln~~P~l~~f~ 134 (331)
T KOG2603|consen 115 S--PQVFQQLNLNNVPHLVLFS 134 (331)
T ss_pred c--HHHHHHhcccCCCeEEEeC
Confidence 7 9999999999999999874
No 197
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.16 E-value=0.015 Score=42.73 Aligned_cols=44 Identities=18% Similarity=0.149 Sum_probs=36.1
Q ss_pred cCCCcEEEEEEcCCChhHHhHhHHHHHHHHhC--CC-cEEEEEECCC
Q 031078 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH--PH-VTTYKIDIDQ 142 (166)
Q Consensus 99 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~--~~-v~~~~vDid~ 142 (166)
.+.+.+|+.|+..-|++|+.+.+.+.++.+++ ++ +.|+..++..
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPL 56 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence 35578899999999999999999999999887 44 8888887743
No 198
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.06 E-value=0.076 Score=35.82 Aligned_cols=69 Identities=12% Similarity=0.005 Sum_probs=50.8
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC-CcEEEEEECCCcchHHHHHhCCCCcceEE
Q 031078 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQKGLESTLSKLNISAVVSS 160 (166)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~-~v~~~~vDid~~~~~~l~~~~~V~~vPTl 160 (166)
..+.+.+++++.+. .++.+||-|+..+|+ .....+.++++.+. ++.|+.+. . .++++++++.. |++
T Consensus 2 ~~i~s~~~l~~~~~----~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~--~---~~~~~~~~~~~-~~i 68 (97)
T cd02981 2 KELTSKEELEKFLD----KDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS--D---KEVAKKLKVKP-GSV 68 (97)
T ss_pred eecCCHHHHHHHhc----cCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC--h---HHHHHHcCCCC-Cce
Confidence 46778888888654 567889999999998 46778888888886 48776555 2 46777788764 666
Q ss_pred EEc
Q 031078 161 LSP 163 (166)
Q Consensus 161 l~~ 163 (166)
+++
T Consensus 69 ~l~ 71 (97)
T cd02981 69 VLF 71 (97)
T ss_pred EEe
Confidence 665
No 199
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.04 E-value=0.051 Score=38.55 Aligned_cols=71 Identities=13% Similarity=0.054 Sum_probs=52.5
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHh---CCC-cEEEEEECCCcchHHHHHhCCCCc--ceE
Q 031078 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAK---HPH-VTTYKIDIDQKGLESTLSKLNISA--VVS 159 (166)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~---~~~-v~~~~vDid~~~~~~l~~~~~V~~--vPT 159 (166)
+.++.+.... .+.+..+.|+ .-..-..+...+.+++++ +.+ +.|+.+|.+.. ...++.||+.. +|.
T Consensus 5 t~e~~~~~~~----~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~--~~~~~~fgl~~~~~P~ 76 (111)
T cd03072 5 TFENAEELTE----EGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKF--RHPLLHLGKTPADLPV 76 (111)
T ss_pred ccccHHHHhc----CCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHh--hhHHHHcCCCHhHCCE
Confidence 3455555544 4455555666 222346788899999999 987 99999999997 45889999987 899
Q ss_pred EEEcC
Q 031078 160 SLSPS 164 (166)
Q Consensus 160 ll~~d 164 (166)
+.+.+
T Consensus 77 i~i~~ 81 (111)
T cd03072 77 IAIDS 81 (111)
T ss_pred EEEEc
Confidence 98865
No 200
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=95.62 E-value=0.053 Score=34.76 Aligned_cols=54 Identities=9% Similarity=0.028 Sum_probs=38.0
Q ss_pred EEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEc
Q 031078 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 106 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~ 163 (166)
+.|+..||+.|++..-.+++..-. +.++.+|.... ..++.+......+|++..-
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~---~e~~~v~~~~~-~~~~~~~np~~~vP~L~~~ 55 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT---VELREVELKNK-PAEMLAASPKGTVPVLVLG 55 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC---cEEEEeCCCCC-CHHHHHHCCCCCCCEEEEC
Confidence 457889999999998777766333 45666665432 1566666777899999765
No 201
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=95.47 E-value=0.074 Score=37.80 Aligned_cols=49 Identities=6% Similarity=0.047 Sum_probs=41.2
Q ss_pred hhHHhHhHHHHHHHHhCC-C-cEEEEEECCCcchHHHHHhCCCCc----ceEEEEcC
Q 031078 114 GPCKFIWPVIGELSAKHP-H-VTTYKIDIDQKGLESTLSKLNISA----VVSSLSPS 164 (166)
Q Consensus 114 ~~Ck~~~p~l~~la~~~~-~-v~~~~vDid~~~~~~l~~~~~V~~----vPTll~~d 164 (166)
..-..+...+.+++++++ + +.|+.+|.++. ...++.||+.. +|.+.+.+
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~--~~~l~~fgl~~~~~~~P~~~i~~ 85 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDF--SHELEEFGLDFSGGEKPVVAIRT 85 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHH--HHHHHHcCCCcccCCCCEEEEEe
Confidence 444678889999999998 5 99999999987 56889999984 99998875
No 202
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=95.43 E-value=0.025 Score=44.25 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=32.8
Q ss_pred CCcEEEEEEcCCChhHHhHhHHH---HHHHHhCCC-cEEEEEEC
Q 031078 101 SLPAIFYFTAAWCGPCKFIWPVI---GELSAKHPH-VTTYKIDI 140 (166)
Q Consensus 101 ~k~vvV~F~a~WC~~Ck~~~p~l---~~la~~~~~-v~~~~vDi 140 (166)
+++.||.|+.-.|++|+.+.+.+ +.+.+.+++ +.++++.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 45779999999999999999876 788888874 77776554
No 203
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.043 Score=50.12 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHH---HHHHHhCC-CcEEEEEECCCcchHHHHHhCC--------C
Q 031078 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHP-HVTTYKIDIDQKGLESTLSKLN--------I 154 (166)
Q Consensus 87 ~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l---~~la~~~~-~v~~~~vDid~~~~~~l~~~~~--------V 154 (166)
.+.|+++ +..+||+++-...+||.=|+.|...= +++++-.. ++.-+|||-++- +++-+.|. -
T Consensus 33 ~eAf~~A----~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREER--PDvD~~Ym~~~q~~tG~ 106 (667)
T COG1331 33 EEAFAKA----KEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREER--PDVDSLYMNASQAITGQ 106 (667)
T ss_pred HHHHHHH----HHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhc--cCHHHHHHHHHHHhccC
Confidence 4555554 55889999999999999999997422 33333332 367788888775 55444442 4
Q ss_pred CcceEEEEc
Q 031078 155 SAVVSSLSP 163 (166)
Q Consensus 155 ~~vPTll~~ 163 (166)
.+.|-.+|+
T Consensus 107 GGWPLtVfL 115 (667)
T COG1331 107 GGWPLTVFL 115 (667)
T ss_pred CCCceeEEE
Confidence 578876665
No 204
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.02 E-value=0.068 Score=40.05 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=38.6
Q ss_pred EEEEEcC------CChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc--hHHHHHhCCC----CcceEEEEcC
Q 031078 105 IFYFTAA------WCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNI----SAVVSSLSPS 164 (166)
Q Consensus 105 vV~F~a~------WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~--~~~l~~~~~V----~~vPTll~~d 164 (166)
|+.|+++ ||++|+.+...|+++ ++.|..+|++... ..++.+.++. ..+|.+++-+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G 68 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDG 68 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECC
Confidence 4556677 999999999998875 4677888887641 1334444454 6899988743
No 205
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.65 E-value=0.087 Score=39.40 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=37.8
Q ss_pred CcEEEEEEcCCChhHHhH-hHHHHHHHHhCC--Cc-EEEEEECCCcc-hHHHHHhCCC
Q 031078 102 LPAIFYFTAAWCGPCKFI-WPVIGELSAKHP--HV-TTYKIDIDQKG-LESTLSKLNI 154 (166)
Q Consensus 102 k~vvV~F~a~WC~~Ck~~-~p~l~~la~~~~--~v-~~~~vDid~~~-~~~l~~~~~V 154 (166)
..+|+.|.+.||+.|... .+.|.+..+++. |+ .++.|..|... ..++++++++
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 455555568899999998 999988888775 46 58888877642 2345566665
No 206
>PHA03075 glutaredoxin-like protein; Provisional
Probab=94.45 E-value=0.073 Score=38.34 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=29.7
Q ss_pred CcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEEC
Q 031078 102 LPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDI 140 (166)
Q Consensus 102 k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDi 140 (166)
|.++|.|.-+.|+-|+.....++++..+| .+.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY---~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY---DILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc---cEEEEEe
Confidence 57899999999999999999999998777 3444443
No 207
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=94.21 E-value=0.24 Score=42.18 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=51.9
Q ss_pred CCCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHH------HHHHHHh---CCCcEEEEEECCCcchH
Q 031078 76 DGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPV------IGELSAK---HPHVTTYKIDIDQKGLE 146 (166)
Q Consensus 76 ~~~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~------l~~la~~---~~~v~~~~vDid~~~~~ 146 (166)
++..+++.++ ..+|.+++++ ....+|+||.+-- .-+..... +-+|+.+ -.++.|+.||..++ .
T Consensus 31 DGkDRVi~Ln-eKNfk~~lKk----yd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd--~ 102 (383)
T PF01216_consen 31 DGKDRVIDLN-EKNFKRALKK----YDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD--A 102 (383)
T ss_dssp SSS--CEEE--TTTHHHHHHH-----SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT--H
T ss_pred CCccceEEcc-hhHHHHHHHh----hcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH--H
Confidence 3445566665 5999998873 4688888888863 23333222 2334332 24699999999998 8
Q ss_pred HHHHhCCCCcceEEEEcC
Q 031078 147 STLSKLNISAVVSSLSPS 164 (166)
Q Consensus 147 ~l~~~~~V~~vPTll~~d 164 (166)
.+++++|+...+++.+++
T Consensus 103 klAKKLgv~E~~SiyVfk 120 (383)
T PF01216_consen 103 KLAKKLGVEEEGSIYVFK 120 (383)
T ss_dssp HHHHHHT--STTEEEEEE
T ss_pred HHHHhcCccccCcEEEEE
Confidence 999999999999998875
No 208
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=94.15 E-value=0.019 Score=40.43 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=29.2
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc-----chHHHHHhCC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK-----GLESTLSKLN 153 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~-----~~~~l~~~~~ 153 (166)
+..|+.+||+.|++....+++- ++.|-.+|+.++ ....+.+++|
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 3578999999999998888765 445555565443 2344455554
No 209
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=94.09 E-value=0.011 Score=49.18 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=48.6
Q ss_pred CCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc-chHHHHHhCCCCcceEEEEcCC
Q 031078 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK-GLESTLSKLNISAVVSSLSPSF 165 (166)
Q Consensus 101 ~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~-~~~~l~~~~~V~~vPTll~~d~ 165 (166)
...+-+.||+.||+.-+..+|.++-....|+.+.... +++. ..+.+..+|++++.|+.++.++
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~--vee~~~lpsv~s~~~~~~~ps~~~~n~ 139 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFA--VEESQALPSVFSSYGIHSEPSNLMLNQ 139 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhcccccccc--HHHHhhcccchhccccccCCcceeecc
Confidence 4578889999999999999999998888887433333 2221 1267889999999999988753
No 210
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.19 Score=38.08 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=35.4
Q ss_pred CCCcEEEEEE-cCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCCc
Q 031078 100 DSLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQK 143 (166)
Q Consensus 100 ~~k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~ 143 (166)
.++.+|++|| ..|++.|-...-.|.+...++. ++.++.|..|..
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~ 75 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSP 75 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCH
Confidence 5668899998 6799999999999988887775 478888877754
No 211
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=93.68 E-value=0.32 Score=32.11 Aligned_cols=56 Identities=9% Similarity=0.003 Sum_probs=45.6
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCC-C-cEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHP-H-VTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~-~-v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
+..|-+...+-.+.....+.++.+++. + +.+-.||+.+. +.+++.++|-++||++-
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~--P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQ--PQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccC--HhHHhhCCEEEechhhh
Confidence 445556666888888888888887764 3 88889999998 99999999999999764
No 212
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=93.60 E-value=0.27 Score=31.00 Aligned_cols=56 Identities=11% Similarity=0.022 Sum_probs=37.3
Q ss_pred EEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCC--cchHHHHHhCCCCcceEEEEcC
Q 031078 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ--KGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 106 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~--~~~~~l~~~~~V~~vPTll~~d 164 (166)
..|+.+||+.|++..-.+++..-. +....+|... ....++.+......+|++.+-+
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~ 59 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDD 59 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCCCCCCEEEeCC
Confidence 357888999999999888776333 3455565432 1124566666777899997643
No 213
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=93.25 E-value=0.28 Score=29.85 Aligned_cols=55 Identities=9% Similarity=-0.055 Sum_probs=36.3
Q ss_pred EEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEc
Q 031078 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 106 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~ 163 (166)
..|+.++|+.|++..-.++...-. +....++.+......+.+...-..+|++..-
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~ 56 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLEDG 56 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEEC
Confidence 357889999999888888776332 4555555544321235556777889988754
No 214
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=92.71 E-value=0.89 Score=32.17 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=51.4
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCC
Q 031078 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNIS 155 (166)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~ 155 (166)
..|.+..+|..++. ..+.++|.|.. .-..-......+.+.++...| -++..||+...+...+|+++.|.
T Consensus 4 e~i~d~KdfKKLLR----Tr~NVLvLy~k-s~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~ 73 (112)
T cd03067 4 EDISDHKDFKKLLR----TRNNVLVLYSK-SAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVD 73 (112)
T ss_pred ccccchHHHHHHHh----hcCcEEEEEec-chhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccC
Confidence 35778899999986 33455665544 444445566688888888877 88999999886568999999997
No 215
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=92.45 E-value=0.076 Score=36.93 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=24.8
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~ 142 (166)
+..|+.++|+.|++....+++. ++.|..+|+.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-----CCCcEEEeecc
Confidence 3578999999999998888774 45556666654
No 216
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=92.33 E-value=1.6 Score=31.92 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEcCC-ChhHHhHhHHHHHHH----HhCCCcEEEEEECCCc---chHHHHHhCCC--Cc
Q 031078 87 GEEFNSSLGKVKDDSLPAIFYFTAAW-CGPCKFIWPVIGELS----AKHPHVTTYKIDIDQK---GLESTLSKLNI--SA 156 (166)
Q Consensus 87 ~~~f~~~l~~~~~~~k~vvV~F~a~W-C~~Ck~~~p~l~~la----~~~~~v~~~~vDid~~---~~~~l~~~~~V--~~ 156 (166)
.-+|+..+. .-+.++|.|=..+ -|. -...+.+++ +.-+++-+..|-+... +|.+++++|+| +.
T Consensus 11 ~~tFdKvi~----kf~~~LVKFD~ayPyGe---Khd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~ 83 (126)
T PF07912_consen 11 ELTFDKVIP----KFKYVLVKFDVAYPYGE---KHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKED 83 (126)
T ss_dssp TTHHHHHGG----GSSEEEEEEEESS--CH---HHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC
T ss_pred ceehhheec----cCceEEEEEeccCCCcc---hHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCccc
Confidence 468999987 3579999996554 233 334445555 3345688999987654 37999999999 67
Q ss_pred ceEEEEcC
Q 031078 157 VVSSLSPS 164 (166)
Q Consensus 157 vPTll~~d 164 (166)
+|.++++.
T Consensus 84 fPv~~LF~ 91 (126)
T PF07912_consen 84 FPVIYLFV 91 (126)
T ss_dssp -SEEEEEE
T ss_pred CCEEEEec
Confidence 89988764
No 217
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=92.23 E-value=0.25 Score=39.86 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=49.9
Q ss_pred CCCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCc
Q 031078 76 DGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQK 143 (166)
Q Consensus 76 ~~~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~ 143 (166)
..+..++.+.... ...+++ ..+.++|.|+.|.+-.|++-+.-...+++++++|.+ +.|+.|.+.+.
T Consensus 79 APns~vv~l~g~~-~~~ild-f~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EA 145 (237)
T PF00837_consen 79 APNSPVVTLDGQR-SCRILD-FAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEA 145 (237)
T ss_pred CCCCceEeeCCCc-ceeHHH-hccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhh
Confidence 3445566654433 233333 345789999999999999999999999999999998 78888888764
No 218
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=91.94 E-value=0.36 Score=34.33 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=26.2
Q ss_pred EEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc
Q 031078 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK 143 (166)
Q Consensus 106 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~ 143 (166)
..|+.++|+.|++....+++- ++.+..+|+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCC
Confidence 468999999999999888773 566777787654
No 219
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=91.92 E-value=0.39 Score=30.48 Aligned_cols=52 Identities=10% Similarity=0.119 Sum_probs=31.5
Q ss_pred EEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEc
Q 031078 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 107 ~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~ 163 (166)
.++..+|++|++.+-.+.+. |+.|-.++++........+..+-..+|++..-
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-----gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~ 54 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-----NIPVEQIILQNDDEATPIRMIGAKQVPILEKD 54 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-----CCCeEEEECCCCchHHHHHhcCCCccCEEEeC
Confidence 56788999999888777665 33333333433211223344555679998754
No 220
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=91.78 E-value=0.99 Score=28.97 Aligned_cols=53 Identities=8% Similarity=0.031 Sum_probs=33.9
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEc
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~ 163 (166)
+..|+.++|+.|++.+-.+.+. ++.+-.++++......+ +.-+...+|++..-
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----CCceEEEECCchhHHHH-HHhCCCccCEEEEC
Confidence 4567889999999998777665 33344445543211233 34556789999865
No 221
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=91.71 E-value=1 Score=32.07 Aligned_cols=71 Identities=20% Similarity=0.155 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEcCC
Q 031078 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSPSF 165 (166)
Q Consensus 87 ~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d~ 165 (166)
.+.+.+.+..+.+.+ +.+.|-.---+.=+.....+.++.++.+.. ..+.+| +.+.++|+|+.+|++++.+.
T Consensus 10 ~~~L~~l~~~a~~~~--~~~V~RG~~~g~~~~t~~~~~~l~~~~~~~--~~v~Id----P~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 10 DASLRNLLKQAERAG--VVVVFRGFPDGSFKPTAKAIQELLRKDDPC--PGVQID----PRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHHhCC--cEEEEECCCCCCHHHHHHHHHHHhhccCCC--cceeEC----hhHHhhCCceEcCEEEEEcC
Confidence 356666666655453 333343333333344444455555444322 334444 78899999999999998764
No 222
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=91.64 E-value=0.088 Score=37.27 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=25.5
Q ss_pred EEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc
Q 031078 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK 143 (166)
Q Consensus 106 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~ 143 (166)
..|+.++|+.|++....|++- ++.|..+|+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCC
Confidence 468999999999999888774 466666776554
No 223
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=91.60 E-value=0.57 Score=29.61 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=34.5
Q ss_pred EEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 106 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
..|+.++|+.|++..-.+++..-. +....+|.+.. .+.+.+......+|++..
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~-~~~~~~~~p~~~vP~l~~ 54 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNP-PEDLAELNPYGTVPTLVD 54 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCC-CHHHHhhCCCCCCCEEEE
Confidence 467889999999998877665333 34444554432 145555566778998754
No 224
>PRK09301 circadian clock protein KaiB; Provisional
Probab=91.56 E-value=0.67 Score=32.72 Aligned_cols=60 Identities=8% Similarity=-0.045 Sum_probs=49.9
Q ss_pred CCcEEEEEEcCCChhHHhHhHHHHHHHHhC-CC-cEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKH-PH-VTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 101 ~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~-~~-v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
++.++=.|.+.--+-.+.....+.++.+++ ++ +.+-.||+.+. +.+++.++|-++||++-
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~q--PelAE~~~IvATPTLIK 66 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKN--PQLAEEDKILATPTLAK 66 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC--HhHHhHCCeEEecHHhh
Confidence 356677788888888888888888887765 44 88888999998 99999999999999753
No 225
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=91.48 E-value=0.73 Score=31.56 Aligned_cols=59 Identities=8% Similarity=-0.044 Sum_probs=48.3
Q ss_pred CcEEEEEEcCCChhHHhHhHHHHHHHHhC-CC-cEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 102 LPAIFYFTAAWCGPCKFIWPVIGELSAKH-PH-VTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 102 k~vvV~F~a~WC~~Ck~~~p~l~~la~~~-~~-v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
+.++=.|.+.--+-.+.....+.++.+++ ++ +.+-.||+.+. +.+++.++|-++||++-
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~q--P~lAE~~~IvATPtLIK 63 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKN--PQLAEEDKILATPTLSK 63 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC--HhHHhHCCEEEecHHhh
Confidence 34556677888888888888888887765 44 88888999998 99999999999999763
No 226
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=91.45 E-value=0.44 Score=30.99 Aligned_cols=54 Identities=15% Similarity=0.157 Sum_probs=34.5
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc--hHHHHHhCCCCcceEEEEc
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~--~~~l~~~~~V~~vPTll~~ 163 (166)
+..|+.++|+.|++..-.+++. |+.+-.++++..+ ..++.+......+|+++.-
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~ 57 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDP 57 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeC
Confidence 3467778999999888777765 3444445555431 1344444466789998753
No 227
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=91.15 E-value=0.62 Score=37.93 Aligned_cols=58 Identities=9% Similarity=-0.011 Sum_probs=37.7
Q ss_pred cCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 99 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
.+||+.|++..+.||+.|...+=.+-..-.+|+++.+....-|.. -.--.+||++|..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~~--------d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDPY--------DNYPNTPTLIFNN 113 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCcc--------cCCCCCCeEEEec
Confidence 478999999999999999988755555556677652221111111 1123688888764
No 228
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=90.53 E-value=0.16 Score=37.14 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=25.4
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK 143 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~ 143 (166)
+..|+.+||+.|++....+++- |+.|..+|+.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCC
Confidence 5678999999999988777664 455666666544
No 229
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=89.81 E-value=1.1 Score=28.35 Aligned_cols=54 Identities=9% Similarity=0.070 Sum_probs=36.3
Q ss_pred EEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc--chHHHHHhCCCCcceEEEE
Q 031078 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK--GLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 106 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~--~~~~l~~~~~V~~vPTll~ 162 (166)
..|+.++|+.|++..-.+++..-. +....+|..+. ..+++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 468899999999888777776333 45555665332 1255666666778999864
No 230
>PRK12559 transcriptional regulator Spx; Provisional
Probab=89.36 E-value=0.3 Score=35.71 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=24.1
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~ 142 (166)
+..|+.++|+.|++....+++- ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeC
Confidence 5678999999999988777664 44455555544
No 231
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=88.13 E-value=2.4 Score=28.35 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=36.5
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEc
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~ 163 (166)
+..|+...|+.|++..-.+++..-. +.++.+|.+... ..+.+......+|++..-
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~---~~~~~v~~~~~~-~~~~~~np~~~vPvL~~~ 73 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP---HEVININLKDKP-DWFLEKNPQGKVPALEID 73 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCCc-HHHHhhCCCCCcCEEEEC
Confidence 4556788899999887777665322 455556654431 345566667789999864
No 232
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=88.02 E-value=0.27 Score=34.87 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=25.5
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK 143 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~ 143 (166)
+..|+.++|+.|++....+++. |+.+..+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence 4568899999999998888774 455666676543
No 233
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=88.00 E-value=3.5 Score=30.50 Aligned_cols=74 Identities=11% Similarity=0.159 Sum_probs=51.7
Q ss_pred HHHHHHHhhh----hcCCCcEEEEEEcCCC----hhHHhHh--HHHHHHHHhCCCcEEEEEECCCcch------------
Q 031078 88 EEFNSSLGKV----KDDSLPAIFYFTAAWC----GPCKFIW--PVIGELSAKHPHVTTYKIDIDQKGL------------ 145 (166)
Q Consensus 88 ~~f~~~l~~~----~~~~k~vvV~F~a~WC----~~Ck~~~--p~l~~la~~~~~v~~~~vDid~~~~------------ 145 (166)
+.|+++++.+ +++.|+.+||.+.+-. ..|+... +.+-++.++ ++.+...|+....+
T Consensus 4 Gs~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~--nfv~Wg~dvt~~~~~~~fl~~~~~~~ 81 (136)
T cd02990 4 GSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ--NFITWGWDMTKESNKARFLSSCTRHF 81 (136)
T ss_pred CcHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc--CEEEEeeeccchhhhhHHHHhhhhhh
Confidence 3566676666 7788999999999876 4566553 444444442 47888889877532
Q ss_pred ----HHHHHhCCCCcceEEEEc
Q 031078 146 ----ESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 146 ----~~l~~~~~V~~vPTll~~ 163 (166)
...++.++...+|.+.++
T Consensus 82 g~~a~~~~~~~~~~~fP~~avI 103 (136)
T cd02990 82 GSVAAQTIRNIKTDQLPAILII 103 (136)
T ss_pred hHHHHHHHHhcCcCCCCeEEEE
Confidence 335677889999998765
No 234
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.25 E-value=1.5 Score=29.33 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=35.4
Q ss_pred EEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc------------hH--HHHHhCCCCcceEEEEcCC
Q 031078 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG------------LE--STLSKLNISAVVSSLSPSF 165 (166)
Q Consensus 106 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~------------~~--~l~~~~~V~~vPTll~~d~ 165 (166)
+.|++..||.|......++++. +++-.|++.... .+ +-.+..|--|+|.++.-|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~-----v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~ 73 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN-----VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDG 73 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC-----CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCC
Confidence 6799999999987666666552 334445554320 01 2245667779999987664
No 235
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=87.18 E-value=1.8 Score=32.30 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=33.8
Q ss_pred cEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCC
Q 031078 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNIS 155 (166)
Q Consensus 103 ~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~ 155 (166)
.-++.|+.+.||-|......++. .++++-.++.|.- ..+.++|+|.
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~--~alK~~~gIp 71 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDF--LALKRRLGIP 71 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcH--HHHHHhcCCC
Confidence 45778999999999988877762 3566666666664 5677778774
No 236
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=86.39 E-value=3.3 Score=32.57 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=43.1
Q ss_pred CCCcEEEEEEcCCCh-hHHhHhHHHHHHHHhCC-----C--cEEEEEECCCcchHHHHHhCCC-CcceEEEEc
Q 031078 100 DSLPAIFYFTAAWCG-PCKFIWPVIGELSAKHP-----H--VTTYKIDIDQKGLESTLSKLNI-SAVVSSLSP 163 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~-~Ck~~~p~l~~la~~~~-----~--v~~~~vDid~~~~~~l~~~~~V-~~vPTll~~ 163 (166)
.+++++|+|.=+.|+ .|-.+...+.++.++.. + +.++.+|-+.+ .++..++|.. ...|-+..+
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerD-tp~~lk~Y~~~~~~~~~~~l 137 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERD-TPEVLKKYAELNFDPRWIGL 137 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCC-CHHHHHHHhcccCCCCeeee
Confidence 678999999888885 68888887777766553 3 44555555554 4778888877 555544433
No 237
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=86.34 E-value=3.4 Score=26.47 Aligned_cols=51 Identities=10% Similarity=-0.039 Sum_probs=36.4
Q ss_pred EEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEE
Q 031078 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSL 161 (166)
Q Consensus 107 ~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll 161 (166)
.++..||+.|++..=.++...-. +.+..++..+. -..+.+...-..+|++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~---~~~~~v~~~~~-~~~~~~~~p~~~vPvL~ 51 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIP---YELVPVDPEEK-RPEFLKLNPKGKVPVLV 51 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEE---EEEEEEBTTST-SHHHHHHSTTSBSSEEE
T ss_pred CCCcCCChHHHHHHHHHHHcCCe---EEEeccCcccc-hhHHHhhcccccceEEE
Confidence 36889999999998777665322 45666665543 25667777888999987
No 238
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=85.56 E-value=0.45 Score=34.85 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=24.6
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK 143 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~ 143 (166)
+..|+.++|+.|++....+++- ++.|..+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECCCC
Confidence 4578899999999988777653 455666666543
No 239
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=85.47 E-value=1.8 Score=33.04 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=23.5
Q ss_pred EEEcCCChhHHhHhHHHHHHHHhCCC-cEEE
Q 031078 107 YFTAAWCGPCKFIWPVIGELSAKHPH-VTTY 136 (166)
Q Consensus 107 ~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~ 136 (166)
+|..|+|+.|-...|.+.++..+|++ +.+-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~ 32 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFR 32 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEE
Confidence 69999999999999999999999986 4333
No 240
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=84.76 E-value=4.8 Score=29.52 Aligned_cols=69 Identities=14% Similarity=0.077 Sum_probs=40.6
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEcCC
Q 031078 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSPSF 165 (166)
Q Consensus 88 ~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d~ 165 (166)
+.+.+.+.++.+-+.++|+. .---+.=+.....+.++.++-.+ ..+.|| +.+.++|+|+.+|++++.+.
T Consensus 12 ~~Lk~l~~~a~~~g~~~VlR--G~~~~~~~~T~~~i~~L~~~~~~---~~v~Id----P~lF~~f~I~~VPa~V~~~~ 80 (130)
T TIGR02742 12 PLLKQLLDQAEALGAPLVIR--GLLDNGFKATATRIQSLIKDGGK---SGVQID----PQWFKQFDITAVPAFVVVKD 80 (130)
T ss_pred HHHHHHHHHHHHhCCeEEEe--CCCCCCHHHHHHHHHHHHhcCCC---CcEEEC----hHHHhhcCceEcCEEEEECC
Confidence 45566666555555443332 22222334455555555544332 334444 78999999999999998763
No 241
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.69 E-value=2.1 Score=33.79 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=29.6
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEE
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKI 138 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~v 138 (166)
.++.+++.|...-|++|+...+.+++.....++++++..
T Consensus 83 ~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~ 121 (244)
T COG1651 83 YAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLR 121 (244)
T ss_pred CCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEE
Confidence 336788899999999999999998887777666444433
No 242
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=84.60 E-value=3 Score=31.69 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=34.0
Q ss_pred CCCcEEEEEEcCCC-hhHHhHhHHHHHHHHhC----CCcEEEEEECCCc-chHHHHHh
Q 031078 100 DSLPAIFYFTAAWC-GPCKFIWPVIGELSAKH----PHVTTYKIDIDQK-GLESTLSK 151 (166)
Q Consensus 100 ~~k~vvV~F~a~WC-~~Ck~~~p~l~~la~~~----~~v~~~~vDid~~-~~~~l~~~ 151 (166)
.||+++|+|.-+.| ..|-.+...+.++.+++ .++.++.|-+|-+ +.++..++
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~ 108 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKK 108 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHH
Confidence 57899999999999 57887777776665432 3477777777743 33444333
No 243
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=84.03 E-value=0.43 Score=32.30 Aligned_cols=52 Identities=12% Similarity=0.032 Sum_probs=41.7
Q ss_pred EEcCCChhHHhHhHHHHHHHHhC-CC-cEEEEEECCCcchHHHHHhCCCCcceEEE
Q 031078 108 FTAAWCGPCKFIWPVIGELSAKH-PH-VTTYKIDIDQKGLESTLSKLNISAVVSSL 161 (166)
Q Consensus 108 F~a~WC~~Ck~~~p~l~~la~~~-~~-v~~~~vDid~~~~~~l~~~~~V~~vPTll 161 (166)
|-+.--+..+.+...+..+.+.+ ++ +.+-.||+.+. +++++.++|-++||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~--P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQ--PELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTS--HSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccC--HhHHhHCCeeecceEe
Confidence 34445566777888888887764 44 89999999998 9999999999999975
No 244
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=83.85 E-value=2.3 Score=31.95 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=29.5
Q ss_pred EEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEE
Q 031078 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKI 138 (166)
Q Consensus 104 vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~v 138 (166)
+|.+|+..-|+.|-...+.+.++.++++++++...
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~ 35 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWR 35 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEe
Confidence 47889999999999999999999999976554443
No 245
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=83.74 E-value=0.54 Score=33.51 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=28.6
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc-----chHHHHHhCCC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK-----GLESTLSKLNI 154 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~-----~~~~l~~~~~V 154 (166)
+..|+.+.|..|++....+++- ++.|-.+|+-++ ....+.+++|+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~~p~s~~eL~~~l~~~g~ 51 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLLTEPWTAETLRPFFGDLPV 51 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhcCCCCHHHHHHHHHHcCH
Confidence 4578999999999988777665 344444554332 23445555543
No 246
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=83.07 E-value=13 Score=25.60 Aligned_cols=49 Identities=6% Similarity=0.087 Sum_probs=31.9
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEE
Q 031078 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKID 139 (166)
Q Consensus 88 ~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vD 139 (166)
+++.+.+.+. .+...++.|.... ..|..+...++++++--+.+++...+
T Consensus 8 ~qL~~~f~~l--~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~ 56 (94)
T cd02974 8 QQLKAYLERL--ENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDN 56 (94)
T ss_pred HHHHHHHHhC--CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEec
Confidence 4555555532 2234455565555 99999999999999877666664433
No 247
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=78.32 E-value=5.6 Score=32.15 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=36.2
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHh-----CCCcEEEEEECCCc
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAK-----HPHVTTYKIDIDQK 143 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~-----~~~v~~~~vDid~~ 143 (166)
.|+.+||-+-..+|..|..-...|+.|..+ +++|.|+.|+--..
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 678999999999999999999999888744 56799999985543
No 248
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=78.19 E-value=7.7 Score=24.06 Aligned_cols=54 Identities=13% Similarity=0.024 Sum_probs=34.0
Q ss_pred EEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc--chHHHHHhCCCCcceEEEE
Q 031078 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK--GLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 106 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~--~~~~l~~~~~V~~vPTll~ 162 (166)
..|+.++|+.|++..-.+++..-. +....+|.... ....+.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 357788999999887777765333 45555664321 1134445555668999875
No 249
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=77.88 E-value=14 Score=29.30 Aligned_cols=20 Identities=15% Similarity=0.095 Sum_probs=17.6
Q ss_pred HHHHHhCCCCcceEEEEcCC
Q 031078 146 ESTLSKLNISAVVSSLSPSF 165 (166)
Q Consensus 146 ~~l~~~~~V~~vPTll~~d~ 165 (166)
+.+.++|+|..||+|++...
T Consensus 152 P~lF~~F~I~~VPafVv~C~ 171 (212)
T PRK13730 152 PTLFSQYGIRSVPALVVFCS 171 (212)
T ss_pred HHHHHhcCCccccEEEEEcC
Confidence 78999999999999998643
No 250
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=76.57 E-value=4.3 Score=28.16 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=27.8
Q ss_pred EEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCC
Q 031078 108 FTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNI 154 (166)
Q Consensus 108 F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V 154 (166)
||-.+|+.|......+.+... ...+.|+ |+.......+.+.+++
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~-~~~l~~~--~~~~~~~~~~~~~~~~ 45 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR-GGRLRFV--DIQSEPDQALLASYGI 45 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC-CCCEEEE--ECCChhhhhHHHhcCc
Confidence 789999999999999988832 2235654 5522211344455554
No 251
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=76.23 E-value=22 Score=24.37 Aligned_cols=69 Identities=10% Similarity=-0.016 Sum_probs=44.9
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhC-CCcEEEEEECCCcchHHHHHhCCCCcceE
Q 031078 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH-PHVTTYKIDIDQKGLESTLSKLNISAVVS 159 (166)
Q Consensus 81 v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~-~~v~~~~vDid~~~~~~l~~~~~V~~vPT 159 (166)
+..+.+.+++++.+. .++.+||-|+..--. .....+.+++..+ .++.|+...- ..++.++++ .|+
T Consensus 2 ~~~i~s~~~l~~f~~----~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~-----~~~~~~~~~--~~~ 67 (104)
T cd03069 2 SVELRTEAEFEKFLS----DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSD-----KQLLEKYGY--GEG 67 (104)
T ss_pred ccccCCHHHHHHHhc----cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEECh-----HHHHHhcCC--CCc
Confidence 356778888888765 455677767666444 4567777888877 4577743322 356778888 566
Q ss_pred EEEc
Q 031078 160 SLSP 163 (166)
Q Consensus 160 ll~~ 163 (166)
++++
T Consensus 68 ivl~ 71 (104)
T cd03069 68 VVLF 71 (104)
T ss_pred eEEE
Confidence 5555
No 252
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=74.60 E-value=4.5 Score=30.38 Aligned_cols=27 Identities=26% Similarity=0.612 Sum_probs=24.9
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHP 131 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~ 131 (166)
|.+|+...|+.|-...+.++++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 678999999999999999999999984
No 253
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=74.28 E-value=2 Score=30.47 Aligned_cols=44 Identities=11% Similarity=0.259 Sum_probs=30.1
Q ss_pred EEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc-----chHHHHHhCCC
Q 031078 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK-----GLESTLSKLNI 154 (166)
Q Consensus 106 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~-----~~~~l~~~~~V 154 (166)
..|+-+.|..|++....+++- ++.+..+|+-++ ....+.+..|+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~p~t~~el~~~l~~~g~ 50 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLKNPPTKSELEAIFAKLGL 50 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccCCCcCHHHHHHHHHHcCC
Confidence 468899999999998888774 445555665443 23556666654
No 254
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=74.16 E-value=3.3 Score=29.74 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=29.5
Q ss_pred EEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCC
Q 031078 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLN 153 (166)
Q Consensus 104 vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~ 153 (166)
.+..|+.+-|+.||.....+++-.-+|..+.+.+--.+.+...++.+..+
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 36678999999999999888776444322222222233333344555544
No 255
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=70.88 E-value=2.6 Score=29.75 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=28.1
Q ss_pred EEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc-----chHHHHHhCC
Q 031078 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK-----GLESTLSKLN 153 (166)
Q Consensus 106 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~-----~~~~l~~~~~ 153 (166)
..|+-+.|..|++....+++- ++.|..+|+-++ ....+.+..+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~~~t~~el~~~l~~~~ 49 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLKTPPTAAELRELLAKLG 49 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecccCCcCHHHHHHHHHHcC
Confidence 468899999999998777654 445555665433 2344555554
No 256
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=69.37 E-value=15 Score=22.95 Aligned_cols=56 Identities=9% Similarity=-0.050 Sum_probs=33.5
Q ss_pred EEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEcC
Q 031078 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 107 ~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d 164 (166)
.|+...|+.|.+..-.+++..... ++..+.+|.... ...+.+......+|++...|
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~~~ 58 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSD-DESLLAVNPLGKIPALVLDD 58 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccC-ChHHHHhCCCCCCCEEEECC
Confidence 467788999998877666521111 245555554322 14555555677899887543
No 257
>PRK10853 putative reductase; Provisional
Probab=69.32 E-value=2.4 Score=30.39 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=29.9
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc-----chHHHHHhCCC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK-----GLESTLSKLNI 154 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~-----~~~~l~~~~~V 154 (166)
+..|+-+.|..||+....+++- ++.+..+|+-++ ....+.+++|+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~~k~p~s~~eL~~~l~~~g~ 51 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDYRVDGLDSELLQGFIDELGW 51 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeehccCCcCHHHHHHHHHHcCH
Confidence 4578899999999999888764 444555555332 23455566654
No 258
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=68.57 E-value=2.5 Score=30.68 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=19.2
Q ss_pred EEEEEEcCCChhHHhHhHHHHHH
Q 031078 104 AIFYFTAAWCGPCKFIWPVIGEL 126 (166)
Q Consensus 104 vvV~F~a~WC~~Ck~~~p~l~~l 126 (166)
++..|+-+.|..||+....|++-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC
Confidence 45678889999999999888765
No 259
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=66.27 E-value=9.8 Score=27.23 Aligned_cols=53 Identities=9% Similarity=0.229 Sum_probs=35.5
Q ss_pred CChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCC--CCcceEEEEcCC
Q 031078 112 WCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLN--ISAVVSSLSPSF 165 (166)
Q Consensus 112 WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~--V~~vPTll~~d~ 165 (166)
.|++|..++-.+.-.-.--..+.+..||..+.. ..+....| -++.|++++-++
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR-~~vi~llGE~~QslPvLVL~~~ 77 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPR-QAVIALLGEANQSLPVLVLADG 77 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCch-HHHHHHhChhccCCCEEEeCCC
Confidence 499999988877654333334788889988763 33334443 468999887654
No 260
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=65.67 E-value=22 Score=22.62 Aligned_cols=54 Identities=9% Similarity=0.024 Sum_probs=34.9
Q ss_pred EEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc--hHHHHHhCCCCcceEEEE
Q 031078 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVVSSLS 162 (166)
Q Consensus 106 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~--~~~l~~~~~V~~vPTll~ 162 (166)
..|+.+.|+.|++..-.+++..-. +.+..+|....+ .+++.+--....+|++..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~---~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~ 57 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLR---CEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH 57 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCC---CEEEEecCCcCccCCHHHHHhCcCCCCCEEEE
Confidence 467888999998887666555332 566667664321 145666666778999864
No 261
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=65.67 E-value=19 Score=27.42 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=42.8
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC--cEEEEEECCCcc---------hHHHH-HhCCCCcceEEEE
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQKG---------LESTL-SKLNISAVVSSLS 162 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~~~~vDid~~~---------~~~l~-~~~~V~~vPTll~ 162 (166)
.+|.++|.=.|+-||.-- ...-++.|.++|.+ +.++.+-+++-. ..++| .+|||. +|.+--
T Consensus 24 ~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVt-Fp~f~K 96 (162)
T COG0386 24 KGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVT-FPMFSK 96 (162)
T ss_pred CCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCce-eeeeeE
Confidence 678999999999999765 45566777888864 778777776531 23444 478885 666543
No 262
>PRK10026 arsenate reductase; Provisional
Probab=65.59 E-value=5.8 Score=29.45 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=29.5
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCC-----cchHHHHHhCCC
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ-----KGLESTLSKLNI 154 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~-----~~~~~l~~~~~V 154 (166)
+..|+-+.|..||+....+++- ++.|..+|+-+ +....+.+++++
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~~~ppt~~eL~~~l~~~g~ 53 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYLETPPTRDELVKLIADMGI 53 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeeeCCCcCHHHHHHHHHhCCC
Confidence 5678999999999999888765 34444445432 234455555553
No 263
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=64.38 E-value=17 Score=25.64 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=37.2
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCCc
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQK 143 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~ 143 (166)
.||+++|.=.|+-|+.-. ....|++|.++|. ++.++.+-+++-
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqF 64 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQF 64 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTT
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHh
Confidence 678999999999999988 7789999999997 589999888764
No 264
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=63.88 E-value=40 Score=29.86 Aligned_cols=47 Identities=9% Similarity=0.022 Sum_probs=33.3
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEE
Q 031078 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYK 137 (166)
Q Consensus 88 ~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~ 137 (166)
+++.+.+++ -.+++-+.++.+-|..|..+...++++++--+.+++..
T Consensus 8 ~~l~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~ 54 (517)
T PRK15317 8 TQLKQYLEL---LERPIELVASLDDSEKSAELKELLEEIASLSDKITVEE 54 (517)
T ss_pred HHHHHHHHh---CCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEE
Confidence 455555553 33455555556689999999999999998877666644
No 265
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=62.75 E-value=45 Score=22.58 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=44.8
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhC-CCcEEEEEECCCcchHHHHHhCCCCcceE
Q 031078 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH-PHVTTYKIDIDQKGLESTLSKLNISAVVS 159 (166)
Q Consensus 81 v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~-~~v~~~~vDid~~~~~~l~~~~~V~~vPT 159 (166)
+..|.+.++++.++.. .+..+||-|+..--. .....+.+++..+ .++.|+... + .+++.++++. .|.
T Consensus 2 v~~i~~~~~~e~~~~~---~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~-~----~~~~~~~~~~-~~~ 69 (102)
T cd03066 2 VEIINSERELQAFENI---EDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF-D----SKVAKKLGLK-MNE 69 (102)
T ss_pred ceEcCCHHHHHHHhcc---cCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC-c----HHHHHHcCCC-CCc
Confidence 4678888999888741 244666666665444 3556677788777 457774222 2 3566777775 566
Q ss_pred EEEc
Q 031078 160 SLSP 163 (166)
Q Consensus 160 ll~~ 163 (166)
++++
T Consensus 70 i~l~ 73 (102)
T cd03066 70 VDFY 73 (102)
T ss_pred EEEe
Confidence 6665
No 266
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=62.61 E-value=16 Score=33.43 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=41.7
Q ss_pred HHhhhhcCCCcEEEEEEcCCChhHHhHhHH-H--HHHHHhCCCcEEEEEECCCcchHHH--------HHhCCCCcceEEE
Q 031078 93 SLGKVKDDSLPAIFYFTAAWCGPCKFIWPV-I--GELSAKHPHVTTYKIDIDQKGLEST--------LSKLNISAVVSSL 161 (166)
Q Consensus 93 ~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~-l--~~la~~~~~v~~~~vDid~~~~~~l--------~~~~~V~~vPTll 161 (166)
...++++++|++++-..=+.|.-|..|+.. | ++.++...+ .|++|++|.++-+++ ....|-.++|.-+
T Consensus 104 af~kar~enkpifLsvgystchwchvmekesfeneet~~ilne-nfv~ikVDREERPDVDK~YM~Fv~assg~GGWPmsV 182 (786)
T KOG2244|consen 104 AFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNE-NFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMSV 182 (786)
T ss_pred HHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhh-hhhhhccChhhcCchHHHHHHHHHhccCCCCCceeE
Confidence 334456688999999998999999988742 1 333333322 345555554421222 2345667788766
Q ss_pred Ec
Q 031078 162 SP 163 (166)
Q Consensus 162 ~~ 163 (166)
++
T Consensus 183 ~L 184 (786)
T KOG2244|consen 183 FL 184 (786)
T ss_pred Ee
Confidence 54
No 267
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=60.93 E-value=53 Score=22.74 Aligned_cols=71 Identities=6% Similarity=-0.098 Sum_probs=44.9
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhC-CCcEEEEEECCCcchHHHHHhCCCCcceE
Q 031078 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH-PHVTTYKIDIDQKGLESTLSKLNISAVVS 159 (166)
Q Consensus 81 v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~-~~v~~~~vDid~~~~~~l~~~~~V~~vPT 159 (166)
+..|.+.+++++.+.. .++.+||-|+..--+ .....+.+++..+ .++.|+.... ..+..++++.. |.
T Consensus 2 v~~i~s~~ele~f~~~---~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~-----~~~~~~~~~~~-~~ 69 (107)
T cd03068 2 SKQLQTLKQVQEFLRD---GDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFD-----SEIFKSLKVSP-GQ 69 (107)
T ss_pred ceEcCCHHHHHHHHhc---CCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEECh-----HHHHHhcCCCC-Cc
Confidence 4678889999988652 325666666665443 4566777888887 4577743322 35667888864 44
Q ss_pred EEEc
Q 031078 160 SLSP 163 (166)
Q Consensus 160 ll~~ 163 (166)
++++
T Consensus 70 vvl~ 73 (107)
T cd03068 70 LVVF 73 (107)
T ss_pred eEEE
Confidence 4443
No 268
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=60.84 E-value=34 Score=21.38 Aligned_cols=55 Identities=9% Similarity=0.083 Sum_probs=34.5
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc--chHHHHHhCCCCcceEEEE
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK--GLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~--~~~~l~~~~~V~~vPTll~ 162 (166)
+..|+.+.|+.|++..-.+++..-. ++...+|.... ....+.+......+|++..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~ 58 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALED 58 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEEE
Confidence 3455667799999988877776433 45555555321 1145556666778998764
No 269
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=60.50 E-value=7.5 Score=29.58 Aligned_cols=19 Identities=5% Similarity=0.079 Sum_probs=15.7
Q ss_pred HHHHHhCCCCcceEEEEcC
Q 031078 146 ESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 146 ~~l~~~~~V~~vPTll~~d 164 (166)
..++++++|++.||+++++
T Consensus 137 ~~la~~m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 137 QQLAREMGITGFPTLVIFN 155 (176)
T ss_dssp HHHHHHTT-SSSSEEEEE-
T ss_pred HHHHHHcCCCCCCEEEEEe
Confidence 5789999999999999987
No 270
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=60.18 E-value=60 Score=28.78 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEEC
Q 031078 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDI 140 (166)
Q Consensus 87 ~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDi 140 (166)
.+++.+.+.+ -.+++.+.++..-|..|..+...++++++.-+.+++...+.
T Consensus 7 ~~~l~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~ 57 (515)
T TIGR03140 7 LAQLKSYLAS---LENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTA 57 (515)
T ss_pred HHHHHHHHHh---cCCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecC
Confidence 3555666654 23355554554479999999999999998877776654443
No 271
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=59.36 E-value=39 Score=29.88 Aligned_cols=75 Identities=8% Similarity=-0.019 Sum_probs=48.5
Q ss_pred HHHHHhhhhcCCCcEEEEEEcCCChhHHhHh--HHHHHHHH-hCC-CcEEEEEECCCcchHHHHHhCCCCcceEEEEcCC
Q 031078 90 FNSSLGKVKDDSLPAIFYFTAAWCGPCKFIW--PVIGELSA-KHP-HVTTYKIDIDQKGLESTLSKLNISAVVSSLSPSF 165 (166)
Q Consensus 90 f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~--p~l~~la~-~~~-~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d~ 165 (166)
+-+++..++ .++.++|.|-+.-......+. -..+.... ..- .+..++|+....+-.++++-|-+-.+|+++++++
T Consensus 8 ipeAIa~aK-~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~ 86 (506)
T KOG2507|consen 8 IPEAIAEAK-GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGF 86 (506)
T ss_pred hHHHHHHhh-cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecC
Confidence 344555444 445666667777666666666 22233322 222 3677777777665578889999999999999875
No 272
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=59.09 E-value=8.6 Score=28.83 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=17.0
Q ss_pred HHHHHhCCCCcceEEEEcCC
Q 031078 146 ESTLSKLNISAVVSSLSPSF 165 (166)
Q Consensus 146 ~~l~~~~~V~~vPTll~~d~ 165 (166)
.+.+.++||.++||+++.|+
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~ 178 (193)
T cd03025 159 QKLARELGINGFPTLVLEDD 178 (193)
T ss_pred HHHHHHcCCCccCEEEEEeC
Confidence 46678999999999999874
No 273
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=57.09 E-value=18 Score=30.46 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=39.9
Q ss_pred cEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEE
Q 031078 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSS 160 (166)
Q Consensus 103 ~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTl 160 (166)
.+||.+ .||.|++....++.+.+....++++-||+.++.....++++.-..+|.+
T Consensus 78 ~~lIEL---GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l 132 (319)
T TIGR03439 78 SMLVEL---GSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHV 132 (319)
T ss_pred CEEEEE---CCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCe
Confidence 467765 5889999999999997655568999999998755555555553445543
No 274
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=54.52 E-value=41 Score=25.78 Aligned_cols=58 Identities=10% Similarity=0.046 Sum_probs=36.8
Q ss_pred CCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 101 ~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
+...+..|+.++|+.|+...=.+++..- ++.+..+|.+.. .+++.+..-...+|++..
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~-~~~~~~~nP~g~VPvL~~ 64 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNL-PQDLIDLNPYQSVPTLVD 64 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccC-CHHHHHhCCCCCCCEEEE
Confidence 3345566667789999999877776532 245666665432 145555555678999864
No 275
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=52.74 E-value=13 Score=25.15 Aligned_cols=35 Identities=34% Similarity=0.516 Sum_probs=24.0
Q ss_pred EEcCC---ChhH--HhHhHHHHHH---HHhCCC--cEEEEEECCC
Q 031078 108 FTAAW---CGPC--KFIWPVIGEL---SAKHPH--VTTYKIDIDQ 142 (166)
Q Consensus 108 F~a~W---C~~C--k~~~p~l~~l---a~~~~~--v~~~~vDid~ 142 (166)
||.-| |..| +....++.++ .++||+ |+++.+|-..
T Consensus 28 ywt~w~lp~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~~ 72 (84)
T cd00307 28 FRTSSWQSCGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPKA 72 (84)
T ss_pred cHhhhcCCCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCCc
Confidence 44445 7777 6666666555 578887 8888888653
No 276
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=51.69 E-value=59 Score=28.57 Aligned_cols=50 Identities=16% Similarity=0.310 Sum_probs=41.0
Q ss_pred EEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCC
Q 031078 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLN 153 (166)
Q Consensus 104 vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~ 153 (166)
-+|.|+|.--|.-+...|.++++.+.+|++.++.--+...+...+.+.|+
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~ 99 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG 99 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC
Confidence 58899999999999999999999999999777776666655455556666
No 277
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=51.57 E-value=1.2e+02 Score=24.26 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=34.3
Q ss_pred cEEEEEEcCC------ChhHHhHhHHHHHHHHhCC-CcEEEEEECCCc--chHHHHHhCCCCcceE
Q 031078 103 PAIFYFTAAW------CGPCKFIWPVIGELSAKHP-HVTTYKIDIDQK--GLESTLSKLNISAVVS 159 (166)
Q Consensus 103 ~vvV~F~a~W------C~~Ck~~~p~l~~la~~~~-~v~~~~vDid~~--~~~~l~~~~~V~~vPT 159 (166)
++-|.+|.+- -..=+.+...|++..+.-+ ++++-.+|.+.+ ...+.++++||..++.
T Consensus 26 pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~ 91 (271)
T PF09822_consen 26 PVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQI 91 (271)
T ss_pred CEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccce
Confidence 5555555443 4444555555666665556 599999998665 1234455699887554
No 278
>PRK10387 glutaredoxin 2; Provisional
Probab=50.98 E-value=33 Score=25.93 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=29.7
Q ss_pred EEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEc
Q 031078 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 107 ~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~ 163 (166)
.++...|++|.+..-.+++..-. ++...++..+. ....+......+|+++..
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~---y~~~~~~~~~~--~~~~~~~p~~~VPvL~~~ 54 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIP---VELIVLANDDE--ATPIRMIGQKQVPILQKD 54 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCC---eEEEEcCCCch--hhHHHhcCCcccceEEec
Confidence 45677899999887776655322 33433443332 222233345689998543
No 279
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=49.78 E-value=78 Score=23.13 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=22.9
Q ss_pred EEEEEcC--CChhHHhHhHHHHHHHHhCCCcEEEEEE
Q 031078 105 IFYFTAA--WCGPCKFIWPVIGELSAKHPHVTTYKID 139 (166)
Q Consensus 105 vV~F~a~--WC~~Ck~~~p~l~~la~~~~~v~~~~vD 139 (166)
-|..|+. -|..|.. +++++.++||++++..++
T Consensus 98 ~i~l~te~~pC~SC~~---vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 98 TIDLFTELPPCESCSN---VIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred eEEEEecCCcChhHHH---HHHHHHHHCCCcEEEEec
Confidence 3555555 4999985 778888889997776554
No 280
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.35 E-value=86 Score=27.47 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=49.2
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
++..-+=-|++-.|..|-..-..+.-++--.|++....||-.-. ++-.+.-+|-++||++.
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~F--q~Evear~IMaVPtvfl 175 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALF--QDEVEARNIMAVPTVFL 175 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhh--HhHHHhccceecceEEE
Confidence 34455666778889999999999988888889999999988765 55567789999999875
No 281
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.91 E-value=15 Score=29.44 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHhCCCCcceEEEE
Q 031078 146 ESTLSKLNISAVVSSLS 162 (166)
Q Consensus 146 ~~l~~~~~V~~vPTll~ 162 (166)
...++++||+++|||++
T Consensus 174 ~~~A~e~gI~gVP~fv~ 190 (225)
T COG2761 174 EAAAQEMGIRGVPTFVF 190 (225)
T ss_pred HHHHHHCCCccCceEEE
No 282
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=46.93 E-value=55 Score=22.30 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=30.9
Q ss_pred cCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 110 AAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 110 a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
-.+|+.|++.+=.+.+..- .+.+..+|.+... ..+.+..-...+|++..
T Consensus 19 ~g~cpf~~rvrl~L~eKgi---~ye~~~vd~~~~p-~~~~~~nP~g~vPvL~~ 67 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGV---VFNVTTVDMKRKP-EDLKDLAPGTQPPFLLY 67 (91)
T ss_pred CCCChhHHHHHHHHHHCCC---ceEEEEeCCCCCC-HHHHHhCCCCCCCEEEE
Confidence 3689999998877766511 2455566655542 44555555678998764
No 283
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=46.59 E-value=51 Score=26.02 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=33.3
Q ss_pred CcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEE--CCCcchHHHHHhCCC
Q 031078 102 LPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKID--IDQKGLESTLSKLNI 154 (166)
Q Consensus 102 k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vD--id~~~~~~l~~~~~V 154 (166)
.-.+.+|-..-|+.|......+.. ....+.++-|+ .|.+.+...+.+.+|
T Consensus 109 ~~rlalFvkd~C~~C~~~~~~l~a---~~~~~Diylvgs~~dD~~Ir~WA~~~~I 160 (200)
T TIGR03759 109 GGRLALFVKDDCVACDARVQRLLA---DNAPLDLYLVGSQGDDERIRQWANRHQI 160 (200)
T ss_pred CCeEEEEeCCCChHHHHHHHHHhc---CCCceeEEEecCCCCHHHHHHHHHHcCC
Confidence 345667777999999988776622 22348888888 555545556666655
No 284
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=45.93 E-value=72 Score=19.80 Aligned_cols=52 Identities=12% Similarity=-0.043 Sum_probs=31.1
Q ss_pred EEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCC-CcceEEEE
Q 031078 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNI-SAVVSSLS 162 (166)
Q Consensus 107 ~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V-~~vPTll~ 162 (166)
.|+...|+.|++..=.+++..-. +....+|.... ...+.+..-. ..+|++..
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~---~~~~~~~~~~~-~~~~~~~~p~~~~vP~l~~ 55 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP---YEYVEEDLGNK-SELLLASNPVHKKIPVLLH 55 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC---CEEEEeCcccC-CHHHHHhCCCCCCCCEEEE
Confidence 45677899999988877776333 34444554322 1333333332 68998864
No 285
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=45.62 E-value=17 Score=28.11 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=15.2
Q ss_pred HHHHHhCCCCcceEEEEc
Q 031078 146 ESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 146 ~~l~~~~~V~~vPTll~~ 163 (166)
...++++||+++||+++-
T Consensus 157 ~~~a~~~gI~gtPtfiIn 174 (207)
T PRK10954 157 EKAAADLQLRGVPAMFVN 174 (207)
T ss_pred HHHHHHcCCCCCCEEEEC
Confidence 456789999999999984
No 286
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=45.33 E-value=73 Score=19.95 Aligned_cols=54 Identities=11% Similarity=-0.021 Sum_probs=33.4
Q ss_pred EEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc-chHHHHHhCCCCcceEEEEc
Q 031078 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK-GLESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 107 ~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~-~~~~l~~~~~V~~vPTll~~ 163 (166)
.|+.+-|+.|.+..-.+++..- ++++..+|..++ ..+.+.+..-...+|++..-
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~ 57 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGL---DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGA 57 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCC---ceEEEecccccccCCHHHHHhCCCCCCCEEEcC
Confidence 4566778888887776665422 255566666421 12455555567789998754
No 287
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=41.01 E-value=24 Score=26.30 Aligned_cols=18 Identities=6% Similarity=-0.114 Sum_probs=0.0
Q ss_pred hHHHHHhCCCCcceEEEE
Q 031078 145 LESTLSKLNISAVVSSLS 162 (166)
Q Consensus 145 ~~~l~~~~~V~~vPTll~ 162 (166)
..+.+.++||.++||+++
T Consensus 156 ~~~~a~~~gi~gvPtfvv 173 (192)
T cd03022 156 NTEEAIARGVFGVPTFVV 173 (192)
T ss_pred HHHHHHHcCCCcCCeEEE
No 288
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=40.49 E-value=26 Score=26.03 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=15.9
Q ss_pred HHHHHhCCCCcceEEEEcC
Q 031078 146 ESTLSKLNISAVVSSLSPS 164 (166)
Q Consensus 146 ~~l~~~~~V~~vPTll~~d 164 (166)
.+.+.++||.++|++++-+
T Consensus 157 ~~~a~~~gv~GvP~~vv~g 175 (193)
T PF01323_consen 157 TAEARQLGVFGVPTFVVNG 175 (193)
T ss_dssp HHHHHHTTCSSSSEEEETT
T ss_pred HHHHHHcCCcccCEEEECC
Confidence 5667899999999999843
No 289
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=40.11 E-value=1e+02 Score=23.68 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=27.6
Q ss_pred EEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 108 FTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 108 F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
++...|++|++..=.+++.. +.+-.++++..+.....+......+|++..
T Consensus 3 y~~~~sp~~~kvr~~L~~~g-----l~~e~~~~~~~~~~~~~~~np~g~vP~l~~ 52 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKN-----IPVEKHVLLNDDEETPIRMIGAKQVPILQK 52 (209)
T ss_pred ecCCCCChHHHHHHHHHHcC-----CCeEEEECCCCcchhHHHhcCCCCcceEEe
Confidence 55677999988776665553 333334443321122233334567898763
No 290
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=39.55 E-value=19 Score=30.01 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=23.4
Q ss_pred EecCHHHHHHHHhhhhcCCCcEEEEE---EcCCChhHHhHhH
Q 031078 83 VIESGEEFNSSLGKVKDDSLPAIFYF---TAAWCGPCKFIWP 121 (166)
Q Consensus 83 ~i~s~~~f~~~l~~~~~~~k~vvV~F---~a~WC~~Ck~~~p 121 (166)
.......+.+.-.+. .....||-| |.-||..|+.+..
T Consensus 24 ~~~g~h~lrerarKi--~~gilvIRFEMPynIWC~gC~nhIg 63 (317)
T KOG2990|consen 24 KYHGTHALRERARKI--DQGILVIRFEMPYNIWCDGCKNHIG 63 (317)
T ss_pred ccccchhHHHHHHhh--ccceEEEEEecccchhhccHHHhhh
Confidence 334444454443332 335788888 6779999998864
No 291
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=38.81 E-value=91 Score=24.50 Aligned_cols=38 Identities=26% Similarity=0.456 Sum_probs=28.4
Q ss_pred EEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc
Q 031078 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK 143 (166)
Q Consensus 105 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~ 143 (166)
|=.|++..|..|=.....|.+|.++ ++|..+...+|.-
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYW 39 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYW 39 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcc
Confidence 3468889999999999999999988 5888888887754
No 292
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=37.49 E-value=1.2e+02 Score=21.76 Aligned_cols=43 Identities=14% Similarity=0.034 Sum_probs=37.3
Q ss_pred CCcEEEEEEcCCChhHHhHhHHHHHHHHhCC---CcEEEEEECCCc
Q 031078 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHP---HVTTYKIDIDQK 143 (166)
Q Consensus 101 ~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~---~v~~~~vDid~~ 143 (166)
.+..++.|--.--+.-..+.+.++++++++. ++-|+.||-|.-
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~F 65 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDF 65 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccC
Confidence 3567888888899999999999999999874 599999999986
No 293
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=37.25 E-value=1e+02 Score=20.94 Aligned_cols=33 Identities=6% Similarity=-0.004 Sum_probs=19.6
Q ss_pred CcEEEEEECCCcc-hH-HHHHhC----CCCcceEEEEcC
Q 031078 132 HVTTYKIDIDQKG-LE-STLSKL----NISAVVSSLSPS 164 (166)
Q Consensus 132 ~v~~~~vDid~~~-~~-~l~~~~----~V~~vPTll~~d 164 (166)
++.|-.+|++.+. .. .+.++- +-..+|.+++-+
T Consensus 30 ~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~ 68 (92)
T cd03030 30 KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGD 68 (92)
T ss_pred CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECC
Confidence 6889999997641 11 122222 346788887644
No 294
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=36.65 E-value=45 Score=26.00 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=21.2
Q ss_pred CChhHHhHhHHHHHHHHhCCCcEEEEEECCCc
Q 031078 112 WCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK 143 (166)
Q Consensus 112 WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~ 143 (166)
=||.|+.+...+.+ ..|+++++.+|-...
T Consensus 156 PCGaC~ewL~KIAe---~np~f~v~mFd~t~c 184 (193)
T PF14421_consen 156 PCGACKEWLRKIAE---ANPDFRVYMFDDTRC 184 (193)
T ss_pred cchHHHHHHHHHHH---hCCCeEEEEecCCCc
Confidence 39999887665554 577888888876654
No 295
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=36.23 E-value=1.1e+02 Score=18.93 Aligned_cols=42 Identities=2% Similarity=-0.163 Sum_probs=24.6
Q ss_pred cCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 110 AAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 110 a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
.+||+.|++..-.++.. ++.+-.++++.. . .-.-..+|++..
T Consensus 13 ~s~sp~~~~v~~~L~~~-----~i~~~~~~~~~~--~----~~p~g~vP~l~~ 54 (72)
T cd03054 13 PSLSPECLKVETYLRMA-----GIPYEVVFSSNP--W----RSPTGKLPFLEL 54 (72)
T ss_pred CCCCHHHHHHHHHHHhC-----CCceEEEecCCc--c----cCCCcccCEEEE
Confidence 36999999988777663 444444444432 1 112336777654
No 296
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=35.53 E-value=1.1e+02 Score=19.00 Aligned_cols=53 Identities=8% Similarity=0.060 Sum_probs=34.0
Q ss_pred EEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc--hHHHHHhCCCCcceEEEE
Q 031078 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVVSSLS 162 (166)
Q Consensus 107 ~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~--~~~l~~~~~V~~vPTll~ 162 (166)
.|+.+-++.|+...-.+++..-. +....+|..+.+ .+.+.+..-...+|++..
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~ 57 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKIP---FEECPIDLRKGEQLTPEFKKINPFGKVPAIVD 57 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCCC---cEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE
Confidence 56777899998887777666433 455556654321 135556666778998864
No 297
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=34.84 E-value=89 Score=21.48 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=25.4
Q ss_pred EEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc-----hHHHHHhCC
Q 031078 108 FTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-----LESTLSKLN 153 (166)
Q Consensus 108 F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~-----~~~l~~~~~ 153 (166)
|+-+.|..|+.....+++- |+.+-.+|+-+.. ...+.+.++
T Consensus 1 Y~~~~C~t~rka~~~L~~~-----gi~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN-----GIEYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT-----T--EEEEETTTS---HHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHHc-----CCCeEeehhhhCCCCHHHHHHHHHHhc
Confidence 5778999999999888763 5667778886642 344555555
No 298
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=34.60 E-value=59 Score=20.08 Aligned_cols=52 Identities=8% Similarity=-0.059 Sum_probs=28.7
Q ss_pred EEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 108 FTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 108 F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
+|...|+.|+...=.+++..-. +....+|..+.....+.+......+|++..
T Consensus 4 y~~~~~~~~~~v~~~l~~~gi~---~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~ 55 (72)
T cd03039 4 TYFNIRGRGEPIRLLLADAGVE---YEDVRITYEEWPELDLKPTLPFGQLPVLEI 55 (72)
T ss_pred EEEcCcchHHHHHHHHHHCCCC---cEEEEeCHHHhhhhhhccCCcCCCCCEEEE
Confidence 4557788998777666665333 344444543221122333344567888864
No 299
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=33.79 E-value=2e+02 Score=21.83 Aligned_cols=57 Identities=16% Similarity=0.054 Sum_probs=42.4
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc-chHHHHHhCCCCc
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK-GLESTLSKLNISA 156 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~-~~~~l~~~~~V~~ 156 (166)
.++.++..|=+-.-+.|-..-..|.+.+.++.++.++.|.+|-. ....+|...||+.
T Consensus 44 gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~DLPFAq~RfC~aeGi~n 101 (158)
T COG2077 44 GKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMDLPFAQKRFCGAEGIEN 101 (158)
T ss_pred CceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCCChhHHhhhhhhcCccc
Confidence 44556667777789999999999999999999987888877753 1134555566654
No 300
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.50 E-value=38 Score=26.56 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=19.7
Q ss_pred cEEEEEEcCCChhHHhHhHHHHHHHH
Q 031078 103 PAIFYFTAAWCGPCKFIWPVIGELSA 128 (166)
Q Consensus 103 ~vvV~F~a~WC~~Ck~~~p~l~~la~ 128 (166)
...+.|..++|++|+.....+....+
T Consensus 120 ~~~~~f~~~~~~~~~~a~~~~~~~~~ 145 (244)
T COG1651 120 LREFPFLDPACPYCRRAAQAARCAAD 145 (244)
T ss_pred EEEeecCCCCcHHHHHHHHHHHHhcc
Confidence 45567889999999998877755544
No 301
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=31.62 E-value=1.6e+02 Score=23.48 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=35.4
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECC
Q 031078 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141 (166)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid 141 (166)
+.+++++.++.+.+++--.|| . .-..+.+.+.+.+++||+.+|+-+|..
T Consensus 42 ~~~~~~~~i~~~~~~g~dlIi-~------~g~~~~~~~~~vA~~~p~~~F~~~d~~ 90 (258)
T cd06353 42 EGADAERVLRELAAQGYDLIF-G------TSFGFMDAALKVAKEYPDVKFEHCSGY 90 (258)
T ss_pred chHhHHHHHHHHHHcCCCEEE-E------CchhhhHHHHHHHHHCCCCEEEECCCC
Confidence 567788888776555533333 2 455778888999999999999888763
No 302
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=31.52 E-value=1.5e+02 Score=24.62 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=27.9
Q ss_pred CCCcEEEEEEcCCChh-HHhHh----HHHHHHHHhCCCc---EEEEEECCCc
Q 031078 100 DSLPAIFYFTAAWCGP-CKFIW----PVIGELSAKHPHV---TTYKIDIDQK 143 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~-Ck~~~----p~l~~la~~~~~v---~~~~vDid~~ 143 (166)
.||.+++||.-+.|+. |=... .+++++.++..-. .|+.+|-+.+
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD 189 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERD 189 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccC
Confidence 6789999999999974 54443 3444444333212 5778887554
No 303
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=31.52 E-value=1.6e+02 Score=21.04 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=28.3
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEE--cCCChhHHhHhHHHHHHHHhCCCcEEEE
Q 031078 86 SGEEFNSSLGKVKDDSLPAIFYFT--AAWCGPCKFIWPVIGELSAKHPHVTTYK 137 (166)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vvV~F~--a~WC~~Ck~~~p~l~~la~~~~~v~~~~ 137 (166)
..++++++++.+..+.+.+++--+ ..| -......+++++++++++.++-
T Consensus 65 ~~~nl~~ii~~~~~~~~ivlv~~~~~~~~---~~~~n~~~~~~a~~~~~v~~id 115 (150)
T cd01840 65 TKDQLDELLDALGPDRQVYLVNPHVPRPW---EPDVNAYLLDAAKKYKNVTIID 115 (150)
T ss_pred CHHHHHHHHHHcCCCCEEEEEECCCCcch---HHHHHHHHHHHHHHCCCcEEec
Confidence 568888888876432333332222 112 2345566788888888776653
No 304
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=31.43 E-value=87 Score=23.98 Aligned_cols=46 Identities=17% Similarity=0.303 Sum_probs=28.9
Q ss_pred EEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHH
Q 031078 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLS 150 (166)
Q Consensus 104 vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~ 150 (166)
-+|.|++.-=|......|.++++.+++|++.++---.+..+ .+.++
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg-~~~~~ 67 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTG-REMAR 67 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCH-HHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCch-HHHHH
Confidence 67889999999999999999999999998655544443332 44443
No 305
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=31.37 E-value=30 Score=27.69 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=36.8
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCC
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNI 154 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V 154 (166)
.+++++ -|.+.|..++.+...++++.++.+......++.++- ..+..+|||
T Consensus 220 ~g~pv~--~~~p~s~~a~~~~~la~ell~~~~~~~~~~~~~~~~--~~~~~~~~~ 270 (275)
T TIGR01287 220 RKMTVI--EYDPESEQANEYRELAKKIYENTEFVIPTPLTMDEL--EEILMKFGI 270 (275)
T ss_pred cCCceE--EeCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCHHHH--HHHHHHHHH
Confidence 445543 357889999999999999987655455666666664 778888876
No 306
>PRK11752 putative S-transferase; Provisional
Probab=31.22 E-value=2.1e+02 Score=22.90 Aligned_cols=56 Identities=11% Similarity=-0.013 Sum_probs=36.9
Q ss_pred EEcCCChhHHhHhHHHHHH-HHhCCC--cEEEEEECCCcc--hHHHHHhCCCCcceEEEEc
Q 031078 108 FTAAWCGPCKFIWPVIGEL-SAKHPH--VTTYKIDIDQKG--LESTLSKLNISAVVSSLSP 163 (166)
Q Consensus 108 F~a~WC~~Ck~~~p~l~~l-a~~~~~--v~~~~vDid~~~--~~~l~~~~~V~~vPTll~~ 163 (166)
+|..+|+.|++..=.++++ +...++ +.++.||....+ .+++.+..=...+|+++.-
T Consensus 47 Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~ 107 (264)
T PRK11752 47 LYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDR 107 (264)
T ss_pred EecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeC
Confidence 4445799999999888885 444443 566777764421 2455555556789999764
No 307
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=30.95 E-value=56 Score=21.00 Aligned_cols=48 Identities=8% Similarity=0.003 Sum_probs=28.2
Q ss_pred cCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHH---HhCCCCcceEEEE
Q 031078 110 AAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTL---SKLNISAVVSSLS 162 (166)
Q Consensus 110 a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~---~~~~V~~vPTll~ 162 (166)
-+||+.|++..-.+.+..-. +.+..+|.... .... +.-....+|++..
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~---~~~~~~~~~~~--~~~~~~~~~~p~~~vP~L~~ 63 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLE---YKTVPVEFPDI--PPILGELTSGGFYTVPVIVD 63 (84)
T ss_pred CCcCChhHHHHHHHHhCCCC---CeEEEecCCCc--ccccccccCCCCceeCeEEE
Confidence 36899999988877765333 34555554432 1111 1223568898865
No 308
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.91 E-value=1.6e+02 Score=20.75 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=28.3
Q ss_pred CcEEEEEE----cCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhC
Q 031078 102 LPAIFYFT----AAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKL 152 (166)
Q Consensus 102 k~vvV~F~----a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~ 152 (166)
.+++++.- .+-||........+.... .+.|..+|+=++ +++.+.+
T Consensus 15 n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g----~v~~~~vnVL~d--~eiR~~l 63 (105)
T COG0278 15 NPVVLFMKGTPEFPQCGFSAQAVQILSACG----VVDFAYVDVLQD--PEIRQGL 63 (105)
T ss_pred CceEEEecCCCCCCCCCccHHHHHHHHHcC----CcceeEEeeccC--HHHHhcc
Confidence 35555553 346777777666665542 278888998776 6665444
No 309
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=29.79 E-value=72 Score=24.53 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=37.7
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCCc
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQK 143 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~ 143 (166)
.|+.++|.=-|+.|+.-..-...+.+|.++|. ++.++..-+++-
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQF 78 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQF 78 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccc
Confidence 67888888899999999988889999999986 488888888654
No 310
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=29.76 E-value=1.4e+02 Score=22.28 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=32.3
Q ss_pred CCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC--cEEEEEEC
Q 031078 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDI 140 (166)
Q Consensus 101 ~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~~~~vDi 140 (166)
++-+.+.+++..++-|.-+.-.++.+++.+.+ +.+-.++.
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~ 168 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVEC 168 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 45678889999999999999999999999976 55544444
No 311
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=29.29 E-value=93 Score=24.44 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=31.3
Q ss_pred CCcEEEEEE-cCCChhHHhHhHHHHHHHHhCC--CcEEEEEECCCc
Q 031078 101 SLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQK 143 (166)
Q Consensus 101 ~k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~~~~vDid~~ 143 (166)
+|.+|++|| ++.-..|-.....+.+..+++. |+.++.+.+|..
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~ 78 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSV 78 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcH
Confidence 367777776 5566777777777777777765 488888888865
No 312
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=29.17 E-value=2.4e+02 Score=20.91 Aligned_cols=52 Identities=8% Similarity=0.101 Sum_probs=33.8
Q ss_pred CCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCC-cEEEEEECCCcchHHHHHhCCCC
Q 031078 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNIS 155 (166)
Q Consensus 100 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~~~~vDid~~~~~~l~~~~~V~ 155 (166)
.+++-.|.+|..-|+.|-.....+.+.- .++ +.|..+.-+.. ..+.+..++.
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D--~~~~i~f~~~q~e~g--~~~l~~~~l~ 57 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRD--QGGRIRFAALQSEPG--QALLEAAGLD 57 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhc--cCCcEEEEeccCchh--hhHHhhcCCC
Confidence 4567788899999999999666665542 222 66665554443 5555555553
No 313
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=29.06 E-value=1.4e+02 Score=24.42 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=38.6
Q ss_pred CcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcc----------------hHHHHHhCCCCcceE
Q 031078 102 LPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG----------------LESTLSKLNISAVVS 159 (166)
Q Consensus 102 k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~----------------~~~l~~~~~V~~vPT 159 (166)
+-||=.|++..|..|-.....+.+++++ +++.-....+|.-+ ....++.|+-++++|
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyT 114 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD-PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYT 114 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCC
Confidence 3456678888999999999999999876 55555555554321 134566777666655
No 314
>PHA02513 V1 structural protein V1; Reviewed
Probab=28.14 E-value=32 Score=24.74 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=30.5
Q ss_pred cCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCc
Q 031078 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHV 133 (166)
Q Consensus 85 ~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v 133 (166)
-+.|+..+..+ .||..|.|.-..-...+-|++++.|++
T Consensus 22 ft~eqi~ea~k-----------if~qtwdgnii~sa~~fveva~~npkl 59 (135)
T PHA02513 22 FTKEQIAEATK-----------IFYQTWDGNIISSARRFVEVAKANPKL 59 (135)
T ss_pred cCHHHHHHHHH-----------HHHHhcCchHHHHHHHHHHHHhcCCcc
Confidence 45566666654 499999999999999999999988753
No 315
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.80 E-value=48 Score=29.50 Aligned_cols=34 Identities=32% Similarity=0.608 Sum_probs=25.5
Q ss_pred CCCCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhH
Q 031078 75 PDGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPC 116 (166)
Q Consensus 75 ~~~~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~C 116 (166)
....+.++.+++.++|..+|++ |.+++ ++||+.-
T Consensus 461 ~~rds~~~~v~~~~eF~~aL~~-----k~iil---aPwcg~~ 494 (551)
T KOG4163|consen 461 EKRDSHIVKVNTWEEFVKALDQ-----KKIIL---APWCGEI 494 (551)
T ss_pred HHhhhheeeeeeHHHHHHHhcc-----CCEEE---ccccCcH
Confidence 3466788999999999999852 34444 8999853
No 316
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=27.75 E-value=22 Score=22.79 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=20.1
Q ss_pred HHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEE
Q 031078 125 ELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSL 161 (166)
Q Consensus 125 ~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll 161 (166)
++.++..|+ ++-+|.+. .++|++++|. .|--+
T Consensus 28 ~~te~W~G~-~iIidpe~---SeIAkrlgi~-~Pg~y 59 (64)
T COG2093 28 DLTEEWFGL-LIIIDPEK---SEIAKRLGIK-IPGKY 59 (64)
T ss_pred ccchhhccE-EEEEcCcH---HHHHHHhCCC-CCceE
Confidence 455555564 33366666 5899999996 55433
No 317
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=27.53 E-value=1.5e+02 Score=17.95 Aligned_cols=52 Identities=2% Similarity=-0.150 Sum_probs=28.2
Q ss_pred EEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc--chHHHHHhCCCCcceEEEE
Q 031078 108 FTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK--GLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 108 F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~--~~~~l~~~~~V~~vPTll~ 162 (166)
|+...|+.|....-.+++..- ++....+|.... ...++.+......+|++..
T Consensus 4 ~~~~~~~~~~~~~~~l~~~gi---~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03042 4 YSYFRSSASYRVRIALNLKGL---DYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVI 57 (73)
T ss_pred ecCCCCcchHHHHHHHHHcCC---CCeEEEecCccCCcCChHHHHhCCCCCCCEEEE
Confidence 344556666666544444322 255566665321 1145555556678998864
No 318
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=27.16 E-value=1.2e+02 Score=21.89 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=25.2
Q ss_pred CCCeEEecCHHHHHHHHhhhhcCCCcEEEEEE
Q 031078 78 PSNILVIESGEEFNSSLGKVKDDSLPAIFYFT 109 (166)
Q Consensus 78 ~~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~ 109 (166)
.-....+.+.+++++.++++.+.+++++|...
T Consensus 136 G~~~~~v~~~~~l~~a~~~a~~~~~p~~i~v~ 167 (168)
T cd00568 136 GAKGVRVEDPEDLEAALAEALAAGGPALIEVK 167 (168)
T ss_pred CCeEEEECCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 34567788899999999888777888888754
No 319
>PRK15113 glutathione S-transferase; Provisional
Probab=27.14 E-value=2.4e+02 Score=21.45 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=35.4
Q ss_pred CcEEEEEEcC--CChhHHhHhHHHHHHHHhCCCcEEEEEECCCc--chHHHHHhCCCCcceEEEE
Q 031078 102 LPAIFYFTAA--WCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK--GLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 102 k~vvV~F~a~--WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~--~~~~l~~~~~V~~vPTll~ 162 (166)
++.+..|+.+ .|+.|++..=.+++..-. +.++.+|.... ..+++.+..=...+|++..
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~---~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~ 64 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLP---FELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH 64 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCccccCHHHHhcCCCCCCCEEEE
Confidence 3455566654 599998877777666332 46666776432 1144555555578898864
No 320
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=26.36 E-value=1.4e+02 Score=22.41 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=21.7
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcC
Q 031078 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAA 111 (166)
Q Consensus 79 ~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~ 111 (166)
.....+.+.+++++.++++.+.+++++|.+..+
T Consensus 142 ~~~~~v~~~~el~~al~~a~~~~~p~liev~~~ 174 (186)
T cd02015 142 IKGLRVEKPEELEAALKEALASDGPVLLDVLVD 174 (186)
T ss_pred CceEEeCCHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 345566777777777776666666777766654
No 321
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=26.29 E-value=1.1e+02 Score=22.80 Aligned_cols=49 Identities=6% Similarity=0.160 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC------CcEEEEEECC
Q 031078 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP------HVTTYKIDID 141 (166)
Q Consensus 88 ~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~------~v~~~~vDid 141 (166)
+.+.+++. ..+|-+|.. +-|...|+.+...+.++.++.. .+.++.+|-+
T Consensus 53 ~~l~~~i~----~~kP~vI~v-~g~~~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~~~ 107 (150)
T PF14639_consen 53 ERLKKFIE----KHKPDVIAV-GGNSRESRKLYDDVRDIVEELDEDEQMPPIPVVIVDDE 107 (150)
T ss_dssp HHHHHHHH----HH--SEEEE---SSTHHHHHHHHHHHHHHHTTB-TTS-B--EEE---T
T ss_pred HHHHHHHH----HcCCeEEEE-cCCChhHHHHHHHHHHHHHHhhhcccCCCceEEEECcH
Confidence 44444554 345555555 4589999999999998887664 2555555544
No 322
>PF12532 DUF3732: Protein of unknown function (DUF3732); InterPro: IPR022205 This domain family is found in bacteria and eukaryotes, and is typically between 180 and 198 amino acids in length. There is a conserved DQP sequence motif.
Probab=25.58 E-value=50 Score=25.67 Aligned_cols=20 Identities=25% Similarity=0.095 Sum_probs=15.4
Q ss_pred HHHHhCCCCcceEEEEcCCC
Q 031078 147 STLSKLNISAVVSSLSPSFP 166 (166)
Q Consensus 147 ~l~~~~~V~~vPTll~~d~~ 166 (166)
....+.+-.-+|.|+++|||
T Consensus 90 ~~f~~~~~~~VP~fL~lDQP 109 (193)
T PF12532_consen 90 EFFAKNEKRPVPSFLFLDQP 109 (193)
T ss_pred HHHHhcCCCCCCCeeeecCC
Confidence 34445557789999999998
No 323
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=25.16 E-value=2e+02 Score=23.06 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=27.4
Q ss_pred CChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHh-CCCCcceEEE
Q 031078 112 WCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSK-LNISAVVSSL 161 (166)
Q Consensus 112 WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~-~~V~~vPTll 161 (166)
-|+.|+.+.-.+. .+-.-+++..||+... ++..++ ..-..+|-+.
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~k--p~~f~~~sp~~~~P~l~ 65 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRK--PEWFLDISPGGKPPVLK 65 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCC--cHHHHhhCCCCCCCeEE
Confidence 4777777666665 3333478888999876 555443 3444455443
No 324
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=25.11 E-value=1.2e+02 Score=23.13 Aligned_cols=28 Identities=4% Similarity=-0.079 Sum_probs=23.9
Q ss_pred EecCHHHHHHHHhhhhcCCCcEEEEEEc
Q 031078 83 VIESGEEFNSSLGKVKDDSLPAIFYFTA 110 (166)
Q Consensus 83 ~i~s~~~f~~~l~~~~~~~k~vvV~F~a 110 (166)
.+.+.+++++.++++.+.+++++|.++.
T Consensus 156 ~v~~~~el~~al~~al~~~gp~vIev~~ 183 (193)
T cd03375 156 FSGDIKQLKEIIKKAIQHKGFSFVEVLS 183 (193)
T ss_pred ecCCHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 5788999999998888788899999873
No 325
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=24.74 E-value=38 Score=29.34 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEcCC--ChhHHhHhHHHHHH--HHhCCCcEEEEEECCCc
Q 031078 87 GEEFNSSLGKVKDDSLPAIFYFTAAW--CGPCKFIWPVIGEL--SAKHPHVTTYKIDIDQK 143 (166)
Q Consensus 87 ~~~f~~~l~~~~~~~k~vvV~F~a~W--C~~Ck~~~p~l~~l--a~~~~~v~~~~vDid~~ 143 (166)
.++.-+.+ ++++..++|.||... |+.-..+..+.+-+ .++..|+.++.+-.|.+
T Consensus 287 PDdVL~ll---k~NgGvVMVnfy~~~isc~~~A~v~~v~~Hi~hIr~VaG~~hIGlGg~yD 344 (419)
T KOG4127|consen 287 PDDVLQLL---KENGGVVMVNFYPGFISCSDRATVSDVADHINHIRAVAGIDHIGLGGDYD 344 (419)
T ss_pred cHHHHHHH---hhcCCEEEEEeecccccCCCcccHHHHHHHHHHHHHhhccceeeccCCcC
Confidence 34555554 458899999999865 66655555555444 24445677776665544
No 326
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=24.71 E-value=1.1e+02 Score=21.98 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=24.6
Q ss_pred CCeEEecCH--HHHHHHHhhhhcCCCcEEEEE
Q 031078 79 SNILVIESG--EEFNSSLGKVKDDSLPAIFYF 108 (166)
Q Consensus 79 ~~v~~i~s~--~~f~~~l~~~~~~~k~vvV~F 108 (166)
.....+.+. +++++.++++.+.++++||..
T Consensus 122 ~~~~~v~~~~~~el~~al~~a~~~~gp~vIeV 153 (153)
T PF02775_consen 122 IKGARVTTPDPEELEEALREALESGGPAVIEV 153 (153)
T ss_dssp SEEEEESCHSHHHHHHHHHHHHHSSSEEEEEE
T ss_pred CcEEEEccCCHHHHHHHHHHHHhCCCcEEEEc
Confidence 345677777 999999999988889999863
No 327
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=24.23 E-value=1.5e+02 Score=21.88 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=23.3
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEE
Q 031078 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFT 109 (166)
Q Consensus 79 ~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~ 109 (166)
-....+.+.+++++.++++...+++++|.+.
T Consensus 140 ~~~~~v~~~~el~~al~~a~~~~~p~liev~ 170 (172)
T cd02004 140 GKGELVTTPEELKPALKRALASGKPALINVI 170 (172)
T ss_pred CeEEEECCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 4456777888888888877766778888764
No 328
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=24.10 E-value=1.7e+02 Score=21.05 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=34.7
Q ss_pred CCChhHHhHhHHHHHHHHh----CC--C--cEEEEEECCCcchHHHHHhCCCCcceEEEEcCCC
Q 031078 111 AWCGPCKFIWPVIGELSAK----HP--H--VTTYKIDIDQKGLESTLSKLNISAVVSSLSPSFP 166 (166)
Q Consensus 111 ~WC~~Ck~~~p~l~~la~~----~~--~--v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d~~ 166 (166)
..|..|......+++..++ +. | +++-++.++.. +++..+ -..|++.+-..|
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~---~~~~~~--~~S~~I~inG~p 71 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE---EFARQP--LESPTIRINGRP 71 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH---HHhhcc--cCCCeeeECCEe
Confidence 4799998877766555443 32 3 78888888884 677677 457777765443
No 329
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.06 E-value=1.3e+02 Score=26.87 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=19.2
Q ss_pred hHHHHHHHHhCCCcEEEEEECCCc
Q 031078 120 WPVIGELSAKHPHVTTYKIDIDQK 143 (166)
Q Consensus 120 ~p~l~~la~~~~~v~~~~vDid~~ 143 (166)
....+++.+.+|++++..+|.|..
T Consensus 272 e~~~e~l~~~fp~~~v~~~d~d~~ 295 (505)
T TIGR00595 272 EQVEEELAKLFPGARIARIDSDTT 295 (505)
T ss_pred HHHHHHHHhhCCCCcEEEEecccc
Confidence 556677888899999999998864
No 330
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=24.02 E-value=1.3e+02 Score=20.84 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=19.8
Q ss_pred CChhHHhH------hHHHH-HHHHhCCC--cEEEEEECCCc
Q 031078 112 WCGPCKFI------WPVIG-ELSAKHPH--VTTYKIDIDQK 143 (166)
Q Consensus 112 WC~~Ck~~------~p~l~-~la~~~~~--v~~~~vDid~~ 143 (166)
-|..|..+ ...|+ .|.++||+ +.|..||+...
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p 48 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENP 48 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT-
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCC
Confidence 48888665 33343 44688997 88999999865
No 331
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=23.79 E-value=3.1e+02 Score=20.57 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCC--CcEEEEE
Q 031078 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKI 138 (166)
Q Consensus 87 ~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~~~~v 138 (166)
.+.++++.++-...++-+.++.--+-|++|+ ..+..++++.. .++++..
T Consensus 85 ~~aiqqA~d~G~~~g~~~tm~Vdr~vC~~C~---~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 85 AGAIQQAYDAGKTVGRSMTMYVDRDVCGYCG---GDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred HHHHHHHHHhcCccCCeEEEEECcccchHHH---HHHHHHHHHcCCCeEEEEec
Confidence 3445555543222245566666788999999 66777777764 2555544
No 332
>PHA02096 hypothetical protein
Probab=23.52 E-value=1.5e+02 Score=20.11 Aligned_cols=30 Identities=7% Similarity=-0.052 Sum_probs=17.7
Q ss_pred cEEEEEEcCCChhHHhHhHHHHHHHHhCCC
Q 031078 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHPH 132 (166)
Q Consensus 103 ~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~ 132 (166)
.--|.|+.+|-..=..+...-+.+++-+++
T Consensus 26 ~~gv~fh~swe~a~~~~~~ak~~i~eylkg 55 (103)
T PHA02096 26 FGGVMFHDSWEEADVSLKNAKKSIEEYLKG 55 (103)
T ss_pred ccceEEeccHHHhhhHHHHHHHHHHHHhcc
Confidence 344778999976655555544444444433
No 333
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=23.51 E-value=1.4e+02 Score=22.35 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=24.2
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEEc
Q 031078 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTA 110 (166)
Q Consensus 79 ~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a 110 (166)
.....+.+.+++++.+.++.+.+++++|....
T Consensus 138 ~~~~~v~~~~el~~al~~a~~~~~p~liev~~ 169 (177)
T cd02010 138 AKGYRIESADDLLPVLERALAADGVHVIDCPV 169 (177)
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 34567888888888888777777888887654
No 334
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=23.25 E-value=3.5e+02 Score=24.17 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=25.5
Q ss_pred cCCCcEEEEEEcCC-ChhHHhHhHHHHHHHHhCCC--cEEEEEE
Q 031078 99 DDSLPAIFYFTAAW-CGPCKFIWPVIGELSAKHPH--VTTYKID 139 (166)
Q Consensus 99 ~~~k~vvV~F~a~W-C~~Ck~~~p~l~~la~~~~~--v~~~~vD 139 (166)
++-..+||+|+.+- ...=..+...++++.++|+. +.++.+.
T Consensus 279 ~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~ 322 (499)
T PF05679_consen 279 DNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVK 322 (499)
T ss_pred CceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEec
Confidence 34456788888743 33333456677888888876 5555554
No 335
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=23.11 E-value=1.4e+02 Score=22.37 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=24.0
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEE
Q 031078 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFT 109 (166)
Q Consensus 79 ~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~ 109 (166)
.....+.+.+++++.++++.+.+++++|...
T Consensus 143 ~~~~~v~~~~el~~al~~a~~~~~p~lIev~ 173 (175)
T cd02009 143 LEYRRVSSLDELEQALESALAQDGPHVIEVK 173 (175)
T ss_pred CCeeeCCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 3456788899999988888777788888753
No 336
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=23.07 E-value=2.4e+02 Score=19.01 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=33.0
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECC
Q 031078 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141 (166)
Q Consensus 88 ~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid 141 (166)
+++.+.+.+ . ++-+|-|...+......+....+.+.+..+++.++.--..
T Consensus 41 ~~l~~~~~~---~-~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 41 EELVEALRA---E-RPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHH---T-TCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHHHhc---C-CCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 566555542 2 4556777777888887887777777677788666655443
No 337
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=22.89 E-value=86 Score=24.30 Aligned_cols=29 Identities=31% Similarity=0.743 Sum_probs=20.6
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCCh--hHH
Q 031078 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCG--PCK 117 (166)
Q Consensus 81 v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~--~Ck 117 (166)
++.+.+.++|.+.+.+ ++. ..++||+ .|.
T Consensus 128 ~~~~~~~~e~~~~~~~----~~~----v~~~wcg~~~~e 158 (202)
T cd00862 128 TRIVDTWEEFKEALNE----KGI----VLAPWCGEEECE 158 (202)
T ss_pred eEeeCCHHHHHHHHhc----CCE----EEEEecCCHHHH
Confidence 7888899999998852 222 3479997 554
No 338
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=22.72 E-value=1.8e+02 Score=21.67 Aligned_cols=58 Identities=12% Similarity=0.164 Sum_probs=36.8
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCc
Q 031078 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK 143 (166)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~ 143 (166)
.+..|.+.+..+++.+.++-++.|+.-|..=+.....+-+..+.+++-.++.+|++..
T Consensus 36 ~D~~~~~~~~~a~~aGl~~G~Yhy~~~~~~a~~qa~~fi~~~~~~~~~~~~~lDvE~~ 93 (186)
T cd00599 36 VDPKFATNRARARAAGLLVGAYHFARPCANAEAQADNFVNTVPRDPGSLPLVLDVEDT 93 (186)
T ss_pred cChHHHHHHHHHHHCCCceEEEEEecCCCCHHHHHHHHHHHccCcCCCCCeEEEEecC
Confidence 3466777777777777777777776666555555555555555554445556777654
No 339
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=22.23 E-value=95 Score=21.96 Aligned_cols=41 Identities=10% Similarity=0.102 Sum_probs=28.3
Q ss_pred hHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEEcCC
Q 031078 120 WPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLSPSF 165 (166)
Q Consensus 120 ~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~~d~ 165 (166)
...++++.+-.+++.+.=++. .+++++++++.+|.++.-++
T Consensus 62 ~~~l~~Lr~lapgl~l~P~sg-----ddLa~rL~l~hYPvLit~tg 102 (105)
T TIGR03765 62 AAALQRLRALAPGLPLLPVSG-----DDLAERLGLRHYPVLITATG 102 (105)
T ss_pred HHHHHHHHHHcCCCcccCCCH-----HHHHHHhCCCcccEEEecCc
Confidence 345566666666666543333 47899999999999987553
No 340
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.21 E-value=2.8e+02 Score=19.34 Aligned_cols=38 Identities=24% Similarity=0.428 Sum_probs=24.1
Q ss_pred EEEEEcC-CChhHHhH------hHHHHH-HHHhCCC--cEEEEEECCC
Q 031078 105 IFYFTAA-WCGPCKFI------WPVIGE-LSAKHPH--VTTYKIDIDQ 142 (166)
Q Consensus 105 vV~F~a~-WC~~Ck~~------~p~l~~-la~~~~~--v~~~~vDid~ 142 (166)
++.|.|. -|..|..+ ...++. +.++||+ +++-.||+..
T Consensus 7 l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n 54 (106)
T COG4837 7 LVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITN 54 (106)
T ss_pred EEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCC
Confidence 4445554 48888665 344433 3567887 8888899843
No 341
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.03 E-value=2.6e+02 Score=24.60 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=34.0
Q ss_pred ecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHh--HHHHHHHHhC--CCcEEEEEECC
Q 031078 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIW--PVIGELSAKH--PHVTTYKIDID 141 (166)
Q Consensus 84 i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~--p~l~~la~~~--~~v~~~~vDid 141 (166)
+.+..++-+.+++-..+. -...+|-...||+||.-. ..+.++-++. .+|+++.+|.+
T Consensus 53 ~ltiG~lid~~~~g~~d~-~n~~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~e 113 (420)
T COG3581 53 ILTIGQLIDAIESGEYDI-ENDAVLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLNSE 113 (420)
T ss_pred hhhHHHHHHHHHhCCccc-cccEEEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEeecc
Confidence 345667777665422222 223334455999999753 5555555554 46999999943
No 342
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=21.72 E-value=1.8e+02 Score=18.00 Aligned_cols=52 Identities=10% Similarity=0.014 Sum_probs=28.8
Q ss_pred EEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEECCCcchHHHHHhCCCCcceEEEE
Q 031078 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVVSSLS 162 (166)
Q Consensus 107 ~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDid~~~~~~l~~~~~V~~vPTll~ 162 (166)
.+|.+-|+.|+...-.+++..-. +....+|.+.. ..++.+......+|++..
T Consensus 4 Ly~~~~~~~~~~v~~~L~~~~i~---~e~~~v~~~~~-~~~~~~~~p~~~vP~l~~ 55 (73)
T cd03076 4 LTYFPVRGRAEAIRLLLADQGIS---WEEERVTYEEW-QESLKPKMLFGQLPCFKD 55 (73)
T ss_pred EEEeCCcchHHHHHHHHHHcCCC---CEEEEecHHHh-hhhhhccCCCCCCCEEEE
Confidence 45556799998777777666333 34445554321 022222223456898864
No 343
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=21.48 E-value=1.7e+02 Score=21.53 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=24.0
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEE
Q 031078 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFT 109 (166)
Q Consensus 79 ~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~ 109 (166)
.....+.+.+++.+.++++.+.+++++|...
T Consensus 147 ~~~~~v~~~~el~~al~~a~~~~~p~vi~v~ 177 (178)
T cd02002 147 VEAERVETPEELDEALREALAEGGPALIEVV 177 (178)
T ss_pred CceEEeCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3456788899999888877777788888753
No 344
>PRK06163 hypothetical protein; Provisional
Probab=21.35 E-value=1.5e+02 Score=22.99 Aligned_cols=32 Identities=6% Similarity=0.003 Sum_probs=22.7
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCC
Q 031078 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAW 112 (166)
Q Consensus 81 v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a~W 112 (166)
...+.+.++++..++++.+.+++++|.+..+.
T Consensus 143 ~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~ 174 (202)
T PRK06163 143 SHWAADEAHFEALVDQALSGPGPSFIAVRIDD 174 (202)
T ss_pred EEEeCCHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 34677888888887777666777777776543
No 345
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=21.31 E-value=1.9e+02 Score=24.53 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=36.7
Q ss_pred ecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhHHhHhHHHHHHHHhCCCcEEEEEEC
Q 031078 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDI 140 (166)
Q Consensus 84 i~s~~~f~~~l~~~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~~~~vDi 140 (166)
..+.+++++.++...+++.-.|+ ++--.+...+++++.+||+++|+-+|-
T Consensus 80 ~~~~~~~~~~~~~~a~~g~~lI~-------~~gf~~~d~~~~va~~~Pd~~F~iid~ 129 (345)
T COG1744 80 SDSEADYERALRALAEDGYDLIF-------GTGFAFSDALEKVAAEYPDVKFVIIDG 129 (345)
T ss_pred CcchhHHHHHHHHHHhcCCCEEE-------EeccchhhHHHHHHHHCCCCEEEEecC
Confidence 34478888888876656653333 233366778899999999999999987
No 346
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=20.94 E-value=1.4e+02 Score=28.30 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCcEEEEEECCCcc
Q 031078 121 PVIGELSAKHPHVTTYKIDIDQKG 144 (166)
Q Consensus 121 p~l~~la~~~~~v~~~~vDid~~~ 144 (166)
.+-+++.+.+|+..++++|.|...
T Consensus 495 rieeeL~~~FP~~rv~r~d~Dtt~ 518 (730)
T COG1198 495 RIEEELKRLFPGARIIRIDSDTTR 518 (730)
T ss_pred HHHHHHHHHCCCCcEEEEcccccc
Confidence 444677778999999999999763
No 347
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=20.64 E-value=1.5e+02 Score=22.76 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=23.3
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEEc
Q 031078 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTA 110 (166)
Q Consensus 79 ~~v~~i~s~~~f~~~l~~~~~~~k~vvV~F~a 110 (166)
.....+.+.++++++++++.+.+++++|..-.
T Consensus 152 ~~~~~v~~~~el~~al~~a~~~~gp~lIeV~v 183 (205)
T cd02003 152 ARVEKVKTIEELKAALAKAKASDRTTVIVIKT 183 (205)
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 34567788888888887777667787776654
Done!