BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031079
         (166 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q0WUA3|MENA_ARATH 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic
           OS=Arabidopsis thaliana GN=ABC4 PE=1 SV=2
          Length = 382

 Score =  166 bits (421), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 78/123 (63%), Positives = 96/123 (78%)

Query: 14  GFDRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSV 73
           G   E   L ++  VLS+S+LVG TTSLILFCSHFHQV+GD  VGK SPLVRLGTE+G+ 
Sbjct: 243 GSSSEMRHLPLSGRVLSSSVLVGFTTSLILFCSHFHQVDGDLAVGKYSPLVRLGTEKGAF 302

Query: 74  VVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYY 133
           VV+W + +LYS+L  +GL+R LPL C  +C +T P+G LV SYVE++HKD GKIFMAKYY
Sbjct: 303 VVRWTIRLLYSMLLVLGLTRILPLPCTLMCFLTLPVGNLVSSYVEKHHKDNGKIFMAKYY 362

Query: 134 CVR 136
           CVR
Sbjct: 363 CVR 365


>sp|P73962|MENA_SYNY3 Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase
           OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=menA
           PE=3 SV=1
          Length = 307

 Score = 80.9 bits (198), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 74/127 (58%), Gaps = 3/127 (2%)

Query: 23  SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMIL 82
           S +  +L+ S+ VG++T++ILFCSHFHQVE D   GK SP+VRLGT+ GS V+  +V+ L
Sbjct: 176 SFSWNLLTPSVFVGISTAIILFCSHFHQVEDDLAAGKKSPIVRLGTKLGSQVLTLSVVSL 235

Query: 83  YSLLFAIG-LSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALF 141
           Y L+ AIG L    P   + + A + P    ++ +V + H    ++   K+  V  H   
Sbjct: 236 Y-LITAIGVLCHQAPWQTLLIIA-SLPWAVQLIRHVGQYHDQPEQVSNCKFIAVNLHFFS 293

Query: 142 GAALVAG 148
           G  + AG
Sbjct: 294 GMLMAAG 300


>sp|Q9NR09|BIRC6_HUMAN Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens
           GN=BIRC6 PE=1 SV=2
          Length = 4857

 Score = 30.0 bits (66), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 16  DRENLCL-SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMS 61
           + ENLC+ SIT       LLVGL T  +   S  +QVE   N+ K++
Sbjct: 727 EEENLCIDSITPCADGIHLLVGLRTCPVESLSAINQVEALNNLNKLN 773


>sp|P44739|MENA_HAEIN 1,4-dihydroxy-2-naphthoate octaprenyltransferase OS=Haemophilus
           influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
           GN=menA PE=3 SV=1
          Length = 308

 Score = 30.0 bits (66), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 23  SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSV 73
           SI + ++  ++  GL  S +L  ++   +E D   GK +  VRLG  +G V
Sbjct: 181 SIDSHIILPAIGSGLLASAVLNINNLRDIEQDAKAGKNTLAVRLGAYKGRV 231


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.330    0.142    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,223,526
Number of Sequences: 539616
Number of extensions: 2002249
Number of successful extensions: 5241
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5235
Number of HSP's gapped (non-prelim): 9
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (26.2 bits)