Query 031079
Match_columns 166
No_of_seqs 126 out of 581
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:55:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07419 1,4-dihydroxy-2-napht 100.0 3.9E-31 8.4E-36 226.6 15.7 134 21-155 169-302 (304)
2 TIGR02235 menA_cyano-plnt 1,4- 100.0 1.8E-30 4E-35 220.5 14.3 128 22-150 157-284 (285)
3 PLN02922 prenyltransferase 100.0 5.2E-29 1.1E-33 214.3 15.4 130 23-152 185-314 (315)
4 COG1575 MenA 1,4-dihydroxy-2-n 100.0 9.6E-29 2.1E-33 211.0 15.1 135 18-154 168-302 (303)
5 TIGR00751 menA 1,4-dihydroxy-2 100.0 5.8E-29 1.3E-33 211.2 13.2 126 21-148 159-284 (284)
6 PRK13387 1,4-dihydroxy-2-napht 100.0 2.1E-28 4.5E-33 210.6 15.1 124 30-154 193-316 (317)
7 PRK06080 1,4-dihydroxy-2-napht 99.9 1.3E-23 2.9E-28 177.4 15.0 129 22-152 164-292 (293)
8 PRK05951 ubiA prenyltransferas 99.9 1.9E-23 4.1E-28 177.9 14.0 126 22-154 167-292 (296)
9 PRK13105 ubiA prenyltransferas 99.8 1.6E-20 3.4E-25 159.7 14.2 121 23-150 157-278 (282)
10 TIGR01476 chlor_syn_BchG bacte 99.8 1.6E-19 3.4E-24 152.3 14.0 120 23-145 158-277 (283)
11 TIGR02056 ChlG chlorophyll syn 99.8 2E-19 4.3E-24 154.0 12.7 118 21-142 178-296 (306)
12 PLN00012 chlorophyll synthetas 99.7 5.7E-16 1.2E-20 136.4 15.1 122 21-146 247-369 (375)
13 PRK07566 bacteriochlorophyll/c 99.7 7.5E-16 1.6E-20 132.3 12.5 124 23-151 186-309 (314)
14 PRK12872 ubiA prenyltransferas 99.6 1.1E-13 2.4E-18 116.1 14.4 97 23-120 158-254 (285)
15 KOG4581 Predicted membrane pro 99.5 1.7E-14 3.8E-19 120.4 7.6 132 24-162 227-358 (359)
16 PRK13591 ubiA prenyltransferas 99.5 1.3E-13 2.8E-18 118.7 9.3 89 29-118 178-270 (307)
17 PRK12847 ubiA 4-hydroxybenzoat 99.4 1.5E-12 3.2E-17 110.1 13.0 124 22-152 161-284 (285)
18 PRK12887 ubiA tocopherol phyty 99.4 1.9E-12 4.1E-17 111.3 10.7 76 23-98 179-254 (308)
19 PRK12888 ubiA prenyltransferas 99.4 1.5E-11 3.2E-16 104.7 14.4 127 23-155 156-283 (284)
20 PRK12884 ubiA prenyltransferas 99.4 1.8E-11 3.9E-16 102.7 13.9 115 26-147 155-270 (279)
21 TIGR01475 ubiA_other putative 99.3 1.6E-11 3.4E-16 103.7 12.9 124 26-154 158-281 (282)
22 PRK12392 bacteriochlorophyll c 99.3 1.1E-11 2.4E-16 107.6 11.7 65 22-86 176-240 (331)
23 PRK12875 ubiA prenyltransferas 99.2 1.1E-10 2.4E-15 99.5 12.7 60 23-84 164-223 (282)
24 TIGR01474 ubiA_proteo 4-hydrox 99.2 1.8E-10 4E-15 97.5 13.0 124 23-153 157-280 (281)
25 PRK12878 ubiA 4-hydroxybenzoat 99.2 2.2E-10 4.7E-15 98.8 13.5 125 22-153 188-312 (314)
26 PRK12848 ubiA 4-hydroxybenzoat 99.2 3.1E-10 6.6E-15 96.1 13.0 124 22-152 158-281 (282)
27 PRK12883 ubiA prenyltransferas 99.2 3.3E-10 7.1E-15 95.4 12.8 56 23-79 152-207 (277)
28 PF01040 UbiA: UbiA prenyltran 99.2 1.5E-10 3.2E-15 94.2 10.4 50 24-73 144-193 (257)
29 PRK12871 ubiA prenyltransferas 99.2 4.8E-10 1E-14 96.1 13.6 66 22-87 171-236 (297)
30 PRK12886 ubiA prenyltransferas 99.2 9.3E-10 2E-14 93.9 14.5 72 23-94 159-230 (291)
31 PRK12870 ubiA 4-hydroxybenzoat 99.2 6.1E-10 1.3E-14 94.9 13.0 129 21-154 161-289 (290)
32 PRK12869 ubiA protoheme IX far 99.1 1.6E-09 3.6E-14 91.6 13.3 63 22-84 155-217 (279)
33 PRK12874 ubiA prenyltransferas 99.1 2.9E-09 6.3E-14 90.9 14.5 126 23-155 164-290 (291)
34 PLN02878 homogentisate phytylt 99.0 5.2E-09 1.1E-13 89.3 13.6 65 24-88 154-218 (280)
35 PRK09573 (S)-2,3-di-O-geranylg 99.0 7.7E-09 1.7E-13 87.2 13.0 92 27-118 155-247 (279)
36 PRK12882 ubiA prenyltransferas 99.0 1.4E-08 3.1E-13 85.4 12.9 62 26-87 157-218 (276)
37 PRK13106 ubiA prenyltransferas 98.9 1.7E-08 3.8E-13 86.7 11.9 117 29-155 174-297 (300)
38 TIGR01473 cyoE_ctaB protoheme 98.9 4.7E-08 1E-12 82.5 13.0 59 22-80 154-212 (280)
39 PRK04375 protoheme IX farnesyl 98.8 7.7E-08 1.7E-12 82.1 13.5 127 22-154 163-290 (296)
40 COG0382 UbiA 4-hydroxybenzoate 98.4 7.4E-06 1.6E-10 69.4 13.0 72 24-95 165-236 (289)
41 PLN02809 4-hydroxybenzoate non 98.4 7.1E-06 1.5E-10 70.2 12.4 104 42-155 184-288 (289)
42 PRK12895 ubiA prenyltransferas 98.4 8.9E-06 1.9E-10 69.6 13.0 124 26-155 159-282 (286)
43 PRK12876 ubiA prenyltransferas 98.2 5E-05 1.1E-09 65.6 13.4 35 47-81 193-227 (300)
44 PRK13595 ubiA prenyltransferas 98.1 6E-05 1.3E-09 64.9 12.2 105 36-150 179-283 (292)
45 PRK13362 protoheme IX farnesyl 98.0 0.00017 3.8E-09 62.1 13.8 53 22-74 166-218 (306)
46 PRK12873 ubiA prenyltransferas 97.6 0.0014 3.1E-08 56.4 12.1 41 33-74 177-217 (294)
47 PRK13592 ubiA prenyltransferas 96.6 0.071 1.5E-06 46.2 13.2 41 44-86 193-233 (299)
48 COG0382 UbiA 4-hydroxybenzoate 95.6 0.49 1.1E-05 40.0 13.1 39 26-64 47-88 (289)
49 PLN02776 prenyltransferase 94.9 1 2.3E-05 39.7 13.5 56 22-77 147-204 (341)
50 PRK12884 ubiA prenyltransferas 94.7 1.4 3E-05 36.9 13.4 43 26-69 37-79 (279)
51 TIGR02056 ChlG chlorophyll syn 94.5 0.2 4.4E-06 43.0 8.0 50 33-83 61-113 (306)
52 PRK12324 phosphoribose diphosp 94.2 0.39 8.5E-06 41.4 9.0 55 28-82 48-106 (295)
53 PRK12873 ubiA prenyltransferas 94.1 1.6 3.5E-05 37.6 12.7 43 27-69 45-88 (294)
54 PRK12847 ubiA 4-hydroxybenzoat 94.0 1.2 2.5E-05 37.7 11.6 45 28-72 47-92 (285)
55 PRK08238 hypothetical protein; 93.3 1.3 2.8E-05 40.7 11.3 56 27-82 227-286 (479)
56 TIGR01475 ubiA_other putative 93.0 2.8 6.2E-05 35.3 12.2 31 27-57 37-67 (282)
57 PRK09573 (S)-2,3-di-O-geranylg 92.9 4.1 8.8E-05 34.2 13.0 56 28-83 39-96 (279)
58 PRK12872 ubiA prenyltransferas 92.5 3.4 7.3E-05 34.5 11.9 32 28-59 38-69 (285)
59 PLN02809 4-hydroxybenzoate non 92.3 5.3 0.00011 34.2 13.0 48 28-75 47-95 (289)
60 PRK12882 ubiA prenyltransferas 92.0 2.1 4.5E-05 35.9 10.1 54 28-82 40-96 (276)
61 TIGR01474 ubiA_proteo 4-hydrox 91.8 5 0.00011 33.9 12.2 32 28-59 42-73 (281)
62 PRK12895 ubiA prenyltransferas 91.8 2.9 6.2E-05 35.9 10.8 31 27-57 38-68 (286)
63 PRK07566 bacteriochlorophyll/c 91.4 1.1 2.4E-05 38.6 8.1 46 38-83 77-124 (314)
64 PF01040 UbiA: UbiA prenyltran 91.3 3.8 8.2E-05 33.0 10.6 35 23-57 19-54 (257)
65 PRK12887 ubiA tocopherol phyty 91.2 2.4 5.2E-05 36.6 9.8 25 43-68 70-94 (308)
66 PRK12848 ubiA 4-hydroxybenzoat 90.0 11 0.00023 31.9 13.0 29 30-58 46-74 (282)
67 PLN02776 prenyltransferase 89.9 9.3 0.0002 33.8 12.4 33 27-59 30-62 (341)
68 PRK12886 ubiA prenyltransferas 89.5 11 0.00024 32.2 12.4 32 27-58 43-74 (291)
69 PRK12869 ubiA protoheme IX far 89.2 6.5 0.00014 33.2 10.7 47 28-74 38-88 (279)
70 PRK12883 ubiA prenyltransferas 88.9 3.9 8.4E-05 34.3 9.0 47 33-80 44-93 (277)
71 TIGR01473 cyoE_ctaB protoheme 88.8 13 0.00028 31.2 12.3 54 28-81 37-94 (280)
72 PRK12878 ubiA 4-hydroxybenzoat 88.1 15 0.00033 31.7 12.4 32 26-57 72-103 (314)
73 TIGR01476 chlor_syn_BchG bacte 87.7 3.5 7.7E-05 34.6 8.1 47 36-82 48-96 (283)
74 PRK12875 ubiA prenyltransferas 87.5 4.2 9.2E-05 34.7 8.5 19 44-62 63-81 (282)
75 PRK13106 ubiA prenyltransferas 87.2 19 0.0004 31.1 12.4 30 28-57 51-80 (300)
76 PRK12392 bacteriochlorophyll c 87.1 4.1 8.8E-05 35.7 8.4 46 39-85 63-111 (331)
77 PRK12876 ubiA prenyltransferas 87.1 18 0.00039 31.4 12.2 42 28-69 49-91 (300)
78 PRK12874 ubiA prenyltransferas 86.5 19 0.00042 30.7 12.9 35 24-58 44-79 (291)
79 PLN00012 chlorophyll synthetas 86.3 6.1 0.00013 35.2 9.1 29 30-58 126-155 (375)
80 PRK12870 ubiA 4-hydroxybenzoat 85.0 12 0.00027 31.8 10.2 31 28-58 48-78 (290)
81 PRK04375 protoheme IX farnesyl 84.9 23 0.0005 30.1 12.0 55 28-82 46-104 (296)
82 PRK13595 ubiA prenyltransferas 84.7 8.7 0.00019 33.3 9.1 30 32-61 53-82 (292)
83 PRK13592 ubiA prenyltransferas 84.6 11 0.00024 32.8 9.7 64 21-84 41-106 (299)
84 PRK13362 protoheme IX farnesyl 83.7 28 0.0006 30.0 13.3 36 24-59 44-80 (306)
85 PRK12871 ubiA prenyltransferas 80.2 9.8 0.00021 32.7 7.7 34 23-56 37-71 (297)
86 PRK05951 ubiA prenyltransferas 79.7 11 0.00024 32.1 7.8 39 23-61 36-75 (296)
87 PRK12888 ubiA prenyltransferas 77.9 42 0.00092 28.5 12.7 31 28-58 41-71 (284)
88 PRK13591 ubiA prenyltransferas 75.2 18 0.00038 31.6 7.9 27 31-57 63-89 (307)
89 TIGR01943 rnfA electron transp 72.5 51 0.0011 26.8 10.2 95 63-163 63-165 (190)
90 PRK07419 1,4-dihydroxy-2-napht 71.5 24 0.00051 30.5 7.8 34 23-56 44-80 (304)
91 TIGR02235 menA_cyano-plnt 1,4- 71.2 33 0.00072 29.3 8.6 33 23-55 31-66 (285)
92 PRK13387 1,4-dihydroxy-2-napht 70.4 71 0.0015 27.6 11.5 35 23-57 35-70 (317)
93 KOG1381 Para-hydroxybenzoate-p 69.3 16 0.00035 32.0 6.2 97 49-155 247-346 (353)
94 COG0109 CyoE Polyprenyltransfe 69.1 80 0.0017 27.7 12.3 101 19-119 168-269 (304)
95 PRK13105 ubiA prenyltransferas 68.5 36 0.00079 29.1 8.2 39 25-63 32-71 (282)
96 PRK05151 electron transport co 67.7 67 0.0014 26.2 10.4 92 66-163 67-166 (193)
97 PRK06080 1,4-dihydroxy-2-napht 66.8 43 0.00094 28.1 8.3 31 23-53 34-65 (293)
98 PRK15060 L-dehydroascorbate tr 62.3 1.2E+02 0.0027 27.5 11.9 40 124-163 261-300 (425)
99 COG5477 Predicted small integr 58.5 18 0.00038 26.1 3.7 50 51-100 33-83 (97)
100 TIGR00771 DcuC c4-dicarboxylat 58.4 99 0.0021 27.5 9.4 38 125-162 244-281 (388)
101 TIGR00751 menA 1,4-dihydroxy-2 56.5 82 0.0018 26.8 8.3 31 23-53 24-55 (284)
102 cd00867 Trans_IPPS Trans-Isopr 51.8 4.3 9.3E-05 32.5 -0.3 27 41-67 161-197 (236)
103 COG3389 Uncharacterized protei 51.7 1.2E+02 0.0026 25.9 8.2 59 102-160 91-160 (277)
104 COG1575 MenA 1,4-dihydroxy-2-n 46.4 1.5E+02 0.0032 26.0 8.3 57 23-79 40-103 (303)
105 PF13755 Sensor_TM1: Sensor N- 39.4 13 0.00028 26.2 0.6 24 33-56 24-47 (79)
106 PF06808 DctM: DctM-like trans 39.0 2.9E+02 0.0062 24.7 11.7 39 124-162 261-299 (416)
107 PF03596 Cad: Cadmium resistan 37.4 83 0.0018 25.5 5.1 16 103-118 60-76 (191)
108 PLN02922 prenyltransferase 36.9 2.7E+02 0.006 24.0 8.6 31 23-53 47-78 (315)
109 PRK12456 Na(+)-translocating N 36.4 2.4E+02 0.0052 23.1 10.5 82 76-163 84-173 (199)
110 PF05571 DUF766: Protein of un 36.2 1E+02 0.0023 26.9 5.7 77 21-111 205-285 (296)
111 cd00683 Trans_IPPS_HH Trans-Is 35.4 14 0.00031 30.5 0.4 26 40-65 153-178 (265)
112 TIGR03464 HpnC squalene syntha 34.1 19 0.00041 30.1 0.9 28 38-65 143-170 (266)
113 PF10003 DUF2244: Integral mem 33.9 1.8E+02 0.0039 22.0 6.3 31 67-97 8-38 (140)
114 cd00385 Isoprenoid_Biosyn_C1 I 33.4 10 0.00022 29.0 -0.8 33 37-69 151-185 (243)
115 TIGR03465 HpnD squalene syntha 30.6 22 0.00048 29.5 0.7 26 39-64 143-168 (266)
116 PLN02878 homogentisate phytylt 30.5 2.4E+02 0.0053 24.3 7.1 25 43-68 40-64 (280)
117 COG0109 CyoE Polyprenyltransfe 30.3 3.8E+02 0.0082 23.5 8.9 37 22-58 47-84 (304)
118 COG3097 Uncharacterized protei 30.1 26 0.00055 25.8 0.9 17 50-66 11-27 (106)
119 PF05957 DUF883: Bacterial pro 30.1 65 0.0014 22.5 3.0 19 25-43 73-91 (94)
120 COG5488 Integral membrane prot 24.4 1.7E+02 0.0038 23.3 4.7 47 65-112 25-73 (164)
121 PRK01061 Na(+)-translocating N 24.1 4.5E+02 0.0098 22.3 9.1 91 67-163 87-185 (244)
122 KOG2792 Putative cytochrome C 23.9 99 0.0022 26.7 3.5 38 7-47 58-95 (280)
123 PRK04980 hypothetical protein; 23.6 47 0.001 24.5 1.3 20 50-69 10-29 (102)
124 PF02683 DsbD: Cytochrome C bi 23.3 2.7E+02 0.0059 22.0 5.9 13 49-61 27-39 (211)
125 cd06399 PB1_P40 The PB1 domain 23.3 24 0.00051 25.6 -0.3 10 46-55 48-57 (92)
126 MTH00155 COX3 cytochrome c oxi 23.3 4.5E+02 0.0097 22.0 11.3 47 33-79 41-88 (255)
127 PF02402 Lysis_col: Lysis prot 23.0 25 0.00054 22.3 -0.2 12 44-55 20-31 (46)
128 PRK12768 CysZ-like protein; Re 23.0 2.7E+02 0.0058 23.3 5.9 39 34-72 153-191 (240)
129 PRK09395 actP acetate permease 22.7 6.1E+02 0.013 23.4 8.8 41 28-74 106-150 (551)
130 PF00494 SQS_PSY: Squalene/phy 22.1 34 0.00073 28.0 0.3 28 39-66 151-179 (267)
131 COG4300 CadD Predicted permeas 21.9 4.6E+02 0.0099 21.6 7.1 71 55-132 30-101 (205)
132 TIGR00916 2A0604s01 protein-ex 21.8 4.1E+02 0.0089 21.0 9.8 19 50-68 7-25 (192)
133 PRK10581 geranyltranstransfera 21.6 31 0.00067 29.6 0.0 21 53-73 241-261 (299)
134 PRK11376 hlyE hemolysin E; Pro 21.3 1.8E+02 0.0038 24.9 4.4 43 16-63 256-298 (303)
135 PLN02632 phytoene synthase 21.3 35 0.00076 29.7 0.3 26 39-64 204-229 (334)
136 PF09933 DUF2165: Predicted sm 20.2 4.4E+02 0.0096 20.8 10.2 34 31-65 10-43 (160)
No 1
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.97 E-value=3.9e-31 Score=226.55 Aligned_cols=134 Identities=43% Similarity=0.662 Sum_probs=127.0
Q ss_pred eeeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Q 031079 21 CLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCI 100 (166)
Q Consensus 21 ~~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l 100 (166)
..+++++.+++|+|+|+++++||++||+||+|+||++||||++||+|+++|+++|.++...+|++++.++..|..|+|++
T Consensus 169 t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~~~L 248 (304)
T PRK07419 169 TPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWTTL 248 (304)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031079 101 FLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL 155 (166)
Q Consensus 101 ~l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~~ 155 (166)
++++++|++++.+|.++++.++++++++.++.|++.+++||+++++|++++..+
T Consensus 249 -l~ll~lPl~~~~~~~~~~~~~~~~~l~~~l~~t~~~~~l~g~l~~l~~~l~~~~ 302 (304)
T PRK07419 249 -LSLLSLPFAIKLIRLVRENHDQPEKVSNSKFIAVRFHFWSGLLLSLGLILAYLL 302 (304)
T ss_pred -HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999987766788999999999999999999999999997764
No 2
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.97 E-value=1.8e-30 Score=220.48 Aligned_cols=128 Identities=41% Similarity=0.661 Sum_probs=122.3
Q ss_pred eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 031079 22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIF 101 (166)
Q Consensus 22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~ 101 (166)
.+++++++++|+|+|+++++||++||+||+|+||++||||++||+|+++|+++|..+...+|++++.++..|..|++++
T Consensus 157 ~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~l- 235 (285)
T TIGR02235 157 QSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPWTTL- 235 (285)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079 102 LCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLI 150 (166)
Q Consensus 102 l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lgll 150 (166)
+.++++|++++.+|.++++.++++++++.++.|++.+++||+++++|++
T Consensus 236 l~ll~lPl~~~~~~~~~~~~~~~~~l~~~l~~t~~~~~~~g~l~~~g~~ 284 (285)
T TIGR02235 236 LALASIPWAVKLIRLVRQNHNNPEQISNCKFIAVRFHFLSGILLTLGLL 284 (285)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999877667889999999999999999999999986
No 3
>PLN02922 prenyltransferase
Probab=99.96 E-value=5.2e-29 Score=214.29 Aligned_cols=130 Identities=74% Similarity=1.236 Sum_probs=120.7
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 031079 23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL 102 (166)
Q Consensus 23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l 102 (166)
+++++.+++|+|+|+++++||++||+||+|+||++||||++||+|+++|+++|.+++..+|++++.++..+..|+|++++
T Consensus 185 ~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~~l~ 264 (315)
T PLN02922 185 PLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPLPCALL 264 (315)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999899886437
Q ss_pred HHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079 103 CAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA 152 (166)
Q Consensus 103 ~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~ 152 (166)
.++++|++.+..+.++++.++++++.+.++.|++.+++||+++++|++++
T Consensus 265 ~ll~lpl~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~g~ll~~g~~l~ 314 (315)
T PLN02922 265 CFLTLPLGKLVVDFVEKNHKDNAKIFMAKYYCVRLHALFGAALALGLVLA 314 (315)
T ss_pred HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88889999999998877666688999999999999999999999999875
No 4
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.96 E-value=9.6e-29 Score=211.02 Aligned_cols=135 Identities=19% Similarity=0.267 Sum_probs=125.3
Q ss_pred ccceeeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 031079 18 ENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPL 97 (166)
Q Consensus 18 ~~~~~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~ 97 (166)
+.--..++|..+++|+|+|+++++||++||+||+|+|+++||||||||+|+++|+++|.+++..+|+++++++..+..++
T Consensus 168 yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~ 247 (303)
T COG1575 168 YIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPV 247 (303)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 33356789999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079 98 SCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 154 (166)
Q Consensus 98 ~~l~l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~ 154 (166)
|.+ +.++++|+++|..|.+++++. |.++.+.++.+++...++++++.+|++++.+
T Consensus 248 ~~l-l~ll~~Pl~ir~~r~v~~~~~-~~~~~p~l~~~~~~~~~~~~l~~~~i~~~~l 302 (303)
T COG1575 248 WGL-LFLLALPLAIRAARPVRQNQV-PATLVPMLKNTVKANLLWNLLLAVGILLSQL 302 (303)
T ss_pred HHH-HHHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 887 999999999999999988754 5689999999999999999999999998754
No 5
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.96 E-value=5.8e-29 Score=211.22 Aligned_cols=126 Identities=15% Similarity=0.180 Sum_probs=118.0
Q ss_pred eeeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Q 031079 21 CLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCI 100 (166)
Q Consensus 21 ~~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l 100 (166)
..+++++.++.|+|+|+++++||++||+||+|+|+++||||++||+|+++|+++|.+++..+|++++.++..+..|+|++
T Consensus 159 ~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~~~l 238 (284)
T TIGR00751 159 AHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWWCV 238 (284)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999988888888899998
Q ss_pred HHHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 031079 101 FLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAG 148 (166)
Q Consensus 101 ~l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lg 148 (166)
+.++++|++++.+|.++++ ++++++++.++.|++.+++|++++++|
T Consensus 239 -l~ll~lPl~~~~~~~~~~~-~~~~~l~~~l~~t~~~~~l~~~l~~ig 284 (284)
T TIGR00751 239 -LFLLAAPLLLKAAGPVRSG-RGPRELRPVLRDTGLAMLLWNLLFALG 284 (284)
T ss_pred -HHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999774 457899999999999999999999875
No 6
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.96 E-value=2.1e-28 Score=210.57 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhhHHh
Q 031079 30 SASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPI 109 (166)
Q Consensus 30 l~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~ll~lPl 109 (166)
++|+|+|+++++||++||+||+|+||++||||+|||+|+|+|+++|.++...+|++++..+..|..|++++ ++++++|+
T Consensus 193 l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~lp~~~l-l~ll~lP~ 271 (317)
T PRK13387 193 VISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMGYISPWAL-LSFLTLRK 271 (317)
T ss_pred HHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079 110 GKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 154 (166)
Q Consensus 110 a~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~ 154 (166)
+++.+|.++++.++++++++.+++|++.++.+++++++|++++.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~ll~~~ 316 (317)
T PRK13387 272 PISNLQSFQKEAKDPKYFVIAIRNTVLTNTTFGFLLSASLLIQYL 316 (317)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999998776778899999999999999999999999998653
No 7
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.91 E-value=1.3e-23 Score=177.43 Aligned_cols=129 Identities=19% Similarity=0.268 Sum_probs=120.4
Q ss_pred eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 031079 22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIF 101 (166)
Q Consensus 22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~ 101 (166)
..+++++++.++|.++++++++++||+||+|+||++||||+|||+|+++++++|..+..++|++.+..+..|..|++.+
T Consensus 164 ~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~l- 242 (293)
T PRK06080 164 GTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASPWGL- 242 (293)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999898999998
Q ss_pred HHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079 102 LCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA 152 (166)
Q Consensus 102 l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~ 152 (166)
+.++++|.+.+..+.+++++ ++++..+..+.+++.+..+++++++|++++
T Consensus 243 l~ll~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (293)
T PRK06080 243 LFLLSLPLAVKAARPVLRKQ-KPETLIPALKATGKTNLLFGLLFAIGLLLS 292 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999887664 567888999999999999999999999874
No 8
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.91 E-value=1.9e-23 Score=177.88 Aligned_cols=126 Identities=16% Similarity=0.263 Sum_probs=112.1
Q ss_pred eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 031079 22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIF 101 (166)
Q Consensus 22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~ 101 (166)
.++++++++.|+|+|++++++|++||+||+|+||++||||+|||+|++++ ++|..+...+|++++.++..|..|++++
T Consensus 167 ~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l- 244 (296)
T PRK05951 167 GNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISL- 244 (296)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHH-
Confidence 35788999999999999999999999999999999999999999999999 8999999999999999999999999998
Q ss_pred HHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079 102 LCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 154 (166)
Q Consensus 102 l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~ 154 (166)
+.++++|++.+..+...+..+ .++ ...|++.++++|+++++|++++..
T Consensus 245 ~~ll~lp~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~g~l~~~~~~l~~~ 292 (296)
T PRK05951 245 WALLSLLVAYALCLWQLRKFP-PDP----DEATVQLFMLFGYLYILATLLSAL 292 (296)
T ss_pred HHHHHHHHHHHHHHHHHhhCc-ccc----cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999988887765432 222 347999999999999999998754
No 9
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.85 E-value=1.6e-20 Score=159.73 Aligned_cols=121 Identities=16% Similarity=0.048 Sum_probs=105.9
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 031079 23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL 102 (166)
Q Consensus 23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l 102 (166)
.+++..++.+.++|+++++++.+||+||+|+||++||||+|||+|+++|.+++..+..+++++.+. .+. +. .+ +
T Consensus 157 ~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~---~~~-~~-~~-l 230 (282)
T PRK13105 157 PFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA---LPW-PG-WL-A 230 (282)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH---HHh-HH-HH-H
Confidence 467788999999999999999999999999999999999999999999999999999999877762 232 22 44 7
Q ss_pred HHhhHHhHHHHHHHHH-hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079 103 CAMTSPIGKLVVSYVE-ENHKDKGKIFMAKYYCVRFHALFGAALVAGLI 150 (166)
Q Consensus 103 ~ll~lPla~~~~~~~~-~~~~~~~~l~~~l~~t~~~~ll~glLl~lgll 150 (166)
.++++|++++..|.+. ++ ++|+++++.++.|++.++++|++++++.+
T Consensus 231 ~ll~~p~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~l~~~~~~ 278 (282)
T PRK13105 231 AVLALPYVVNTARFWSVTD-ADCERANRGWRRFLWLNYVSGFLVTMLLI 278 (282)
T ss_pred HHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998886 44 46889999999999999999999999554
No 10
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.82 E-value=1.6e-19 Score=152.29 Aligned_cols=120 Identities=17% Similarity=0.210 Sum_probs=101.1
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 031079 23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL 102 (166)
Q Consensus 23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l 102 (166)
.++++.++.++++|+++.+++.+||+||+|+||++||||+||++|+++++++|..++..+|++.+........|++..++
T Consensus 158 ~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 237 (283)
T TIGR01476 158 PLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPWVATIV 237 (283)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 47888999999999999999999999999999999999999999999999999999988887776544444456553326
Q ss_pred HHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHH
Q 031079 103 CAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAAL 145 (166)
Q Consensus 103 ~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl 145 (166)
.++..|..++..+.+++ ++++.++.++.|++.++.+|.+.
T Consensus 238 ~ll~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 277 (283)
T TIGR01476 238 FLLLVAQIYNQIKLFLR---DPQQNYVRYNATANPFYVLGMLA 277 (283)
T ss_pred HHHHHHHHHHHHHHHHh---ChHHhhHHhhhhcHHHHHHHHHH
Confidence 67777888888887754 35678889999999999999776
No 11
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.81 E-value=2e-19 Score=153.97 Aligned_cols=118 Identities=21% Similarity=0.198 Sum_probs=100.4
Q ss_pred eeeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHh-cchhHHH
Q 031079 21 CLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLS-RALPLSC 99 (166)
Q Consensus 21 ~~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~-g~~p~~~ 99 (166)
+.+++++.++.++++++++.+++++||+||+|+|+++||||+||++|++++++++..++..+|.+.+.+... +..|++.
T Consensus 178 ~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 257 (306)
T TIGR02056 178 FGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLYAA 257 (306)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 357889999999999999999999999999999999999999999999999999999988888776665544 4455555
Q ss_pred HHHHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHH
Q 031079 100 IFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFG 142 (166)
Q Consensus 100 l~l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~g 142 (166)
+ +.++++|...+..|.+++ ++++.++.++.|++.....|
T Consensus 258 l-l~ll~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 296 (306)
T TIGR02056 258 A-LVALIIPQITFQDKYFLK---DPLKNDVKYQASAQPFLVLG 296 (306)
T ss_pred H-HHHHHHHHHHHHHHHHHh---ChHhhCcchhhhhhHHHHHH
Confidence 6 889999999999998865 46778888889888655555
No 12
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.69 E-value=5.7e-16 Score=136.42 Aligned_cols=122 Identities=20% Similarity=0.160 Sum_probs=97.0
Q ss_pred eeeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHh-cchhHHH
Q 031079 21 CLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLS-RALPLSC 99 (166)
Q Consensus 21 ~~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~-g~~p~~~ 99 (166)
+..++++.++.+++.++++.+++++||+||+|+|+++||||+||++|++++++++..++.+.+.+.+..... +..++..
T Consensus 247 ~g~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~~~~~~~y~~ 326 (375)
T PLN00012 247 FGTLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLLAIGKPYYAL 326 (375)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 357888999999999999999999999999999999999999999999999999876666665544433322 2233334
Q ss_pred HHHHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHH
Q 031079 100 IFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALV 146 (166)
Q Consensus 100 l~l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~ 146 (166)
+ +.++.+|......+.+.+ +|.+.++.+..|++..+++|++..
T Consensus 327 ~-~~~l~l~~l~~~~~~~~~---~p~~~~~~~~~~a~~~~~~~~l~~ 369 (375)
T PLN00012 327 A-LLGLIIPQIFFQFKYFLP---DPVKNDVKYQASAQPFLVFGLLVT 369 (375)
T ss_pred H-HHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 566777888777776653 688899999999999999997654
No 13
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.67 E-value=7.5e-16 Score=132.32 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=92.3
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 031079 23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL 102 (166)
Q Consensus 23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l 102 (166)
..++..++.+++.++.+.+++.+||+||+|+||++||||+||++|++++++++..++..+|++++.+......+++..+.
T Consensus 186 ~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 265 (314)
T PRK07566 186 LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIALLLAWGQPLYAAIV 265 (314)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999988765443332233333215
Q ss_pred HHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079 103 CAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLIT 151 (166)
Q Consensus 103 ~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll 151 (166)
.++..|+.....+..+ ++++.+.....+.+...+++++ ..|+++
T Consensus 266 ~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ll-~~~~~~ 309 (314)
T PRK07566 266 GLLLIPQITLQDRLLR----DPLERDVWYNASAQPFYVLGML-VTALAI 309 (314)
T ss_pred HHHHHHHHHHHHHHhh----ChhhcChhhhhhhhHHHHHHHH-HHHHHh
Confidence 5667777766655532 2334556667777776666544 344444
No 14
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.56 E-value=1.1e-13 Score=116.14 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=83.2
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 031079 23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL 102 (166)
Q Consensus 23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l 102 (166)
.++++.++.++...+++.+....||+||+|+||++|+||+|+++|++++++++..+..+++++.+..+..|..|++.+ +
T Consensus 158 ~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 236 (285)
T PRK12872 158 TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLLL-V 236 (285)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH-H
Confidence 357788899999999999999999999999999999999999999999999999999999999988888888888877 6
Q ss_pred HHhhHHhHHHHHHHHHhh
Q 031079 103 CAMTSPIGKLVVSYVEEN 120 (166)
Q Consensus 103 ~ll~lPla~~~~~~~~~~ 120 (166)
.++..|..+...+.+.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~ 254 (285)
T PRK12872 237 LLLLLAYVLYYIIKLFAA 254 (285)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 666666666555555444
No 15
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.53 E-value=1.7e-14 Score=120.39 Aligned_cols=132 Identities=18% Similarity=0.268 Sum_probs=107.9
Q ss_pred ehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 031079 24 ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLC 103 (166)
Q Consensus 24 ~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~ 103 (166)
+.|..+.-++|..+-+-+||+.||.||.|+||++|.-|+++.+|+..+-.+|..++.++|.+..++..- -..|-. +.
T Consensus 227 l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~--~si~~~-lp 303 (359)
T KOG4581|consen 227 LAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALH--CSISFA-LP 303 (359)
T ss_pred eeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-hH
Confidence 344445567889999999999999999999999999999999999999999999999999876655432 345555 78
Q ss_pred HhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 031079 104 AMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPK 162 (166)
Q Consensus 104 ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~~~~~~~~~ 162 (166)
++++|.+.+.-|.++.+ +.++.+-.+|+|+.+.+|++...+.+.+.-+-+-..||
T Consensus 304 lltip~afqiek~frne----qa~~~lp~qtakln~~~gi~yv~~~~~ahqlpa~~l~k 358 (359)
T KOG4581|consen 304 LLTIPMAFQIEKQFRNE----QAFHKLPQQTAKLNFFFGIFYVFACCCAHQLPAFGLPK 358 (359)
T ss_pred HhhchhHHhHHHHhhhH----hhhhhcchhhhhHHHHHHHHHHHHHHHhccCCcCCCCC
Confidence 99999999988888643 35777788999999999999999998875444444444
No 16
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.48 E-value=1.3e-13 Score=118.70 Aligned_cols=89 Identities=17% Similarity=0.124 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHH----HhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 031079 29 LSASLLVGLTTSLIL----FCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCA 104 (166)
Q Consensus 29 ll~sl~~Gll~~aIL----~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~l 104 (166)
+..++++++.+..++ .+||+||+|+||++||||+||++|+++|++++..+.+++|+++++++..|..|+... +.+
T Consensus 178 ~~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~-~~~ 256 (307)
T PRK13591 178 LIPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPI-ILL 256 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch-hhH
Confidence 455667778876666 899999999999999999999999999999999999999999999999898876554 444
Q ss_pred hhHHhHHHHHHHHH
Q 031079 105 MTSPIGKLVVSYVE 118 (166)
Q Consensus 105 l~lPla~~~~~~~~ 118 (166)
-+++.-+-.++...
T Consensus 257 ~s~~~~l~~~~~~~ 270 (307)
T PRK13591 257 YSFVCGLICIQVYS 270 (307)
T ss_pred HHHHHHHHHHHHHc
Confidence 45555444444443
No 17
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.45 E-value=1.5e-12 Score=110.14 Aligned_cols=124 Identities=10% Similarity=0.060 Sum_probs=89.8
Q ss_pred eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 031079 22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIF 101 (166)
Q Consensus 22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~ 101 (166)
.++++++++.++++.+++.+...+|+++|+|+|+++|+||+||++|++++.+.+.......+.+.+..+..|..+++.+
T Consensus 161 g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~- 239 (285)
T PRK12847 161 NQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFYL- 239 (285)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH-
Confidence 3578899999999999999999999999999999999999999999999999998888888888877777776555543
Q ss_pred HHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079 102 LCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA 152 (166)
Q Consensus 102 l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~ 152 (166)
...+..-......... ..+++++..+.. +....++.++.+|++++
T Consensus 240 ~~~~~~~~l~~~~~~~--~~~~~~~~~~~f----~~~~~~~~l~~~~~~~~ 284 (285)
T PRK12847 240 AILAAAGIFYYQYKLL--DFDNPANCMYAF----KANHYVGLLLFLGAVLG 284 (285)
T ss_pred HHHHHHHHHHHHHHHh--CCCCHHHHHHHH----HHhHHHHHHHHHHHHhC
Confidence 2222221111122222 223344444333 33467788887777764
No 18
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=99.40 E-value=1.9e-12 Score=111.30 Aligned_cols=76 Identities=25% Similarity=0.293 Sum_probs=68.3
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 031079 23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLS 98 (166)
Q Consensus 23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~ 98 (166)
.++.++++.++++.+++.++...||++|+|+||+.||||+||++|++++.+++..++..+|+..+.....+..++.
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~ 254 (308)
T PRK12887 179 LIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVN 254 (308)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 5678889999999999999999999999999999999999999999999999999999999988877665544433
No 19
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.38 E-value=1.5e-11 Score=104.69 Aligned_cols=127 Identities=17% Similarity=0.150 Sum_probs=84.1
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 031079 23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL 102 (166)
Q Consensus 23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l 102 (166)
+++++.++.++++++++.....+|+++|+|.|+++|+||+|+++|++++++.+..+...++++.......+...++-+ +
T Consensus 156 ~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~-~ 234 (284)
T PRK12888 156 TWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWW-I 234 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH-H
Confidence 568899999999999999999999999999999999999999999999998777666666555444333332222222 2
Q ss_pred H-HhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031079 103 C-AMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL 155 (166)
Q Consensus 103 ~-ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~~ 155 (166)
+ .++.... .++...-..+++++.+..-. +.+...|+++.+|++++.++
T Consensus 235 ~~~~~~~~l--~~~~~~~~~~~~~~~~~~ff---~~n~~ig~~~~~~~~~~~~~ 283 (284)
T PRK12888 235 GLAITAGAF--AYEHAIVSPTDLSRVNRAFF---TANGFVGIALFGFALLDLLV 283 (284)
T ss_pred HHHHHHHHH--HHHHHHcCccCHHHHHHHHH---HHhhHHHHHHHHHHHHHHHh
Confidence 2 1222222 22222112234555553321 22345788888888887654
No 20
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.36 E-value=1.8e-11 Score=102.75 Aligned_cols=115 Identities=17% Similarity=0.075 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHh
Q 031079 26 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAM 105 (166)
Q Consensus 26 ~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~ll 105 (166)
+.+++.+..+.+++.....+||+||+|+||++|+||+||++|++++++.+..+...++++.......|..+++-+...++
T Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 234 (279)
T PRK12884 155 EAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNILYLAPVLV 234 (279)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 36778888888888888999999999999999999999999999999999888888887666655555444443313334
Q ss_pred hHHhHHHH-HHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 031079 106 TSPIGKLV-VSYVEENHKDKGKIFMAKYYCVRFHALFGAALVA 147 (166)
Q Consensus 106 ~lPla~~~-~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~l 147 (166)
+.+..+.. ++..+ . +++++... .+....++.++++
T Consensus 235 ~~~~~l~~~~~~~~-~-~~~~~~~~-----~~~~~~~~~~~~~ 270 (279)
T PRK12884 235 ADLIFLYSAYSLLR-S-QDRETIRK-----VRKITLTAMLLAL 270 (279)
T ss_pred HHHHHHHHHHHHhc-C-CCHHHHHH-----HHHHHHHHHHHHH
Confidence 44444433 34443 2 22333222 2444555555553
No 21
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.35 E-value=1.6e-11 Score=103.70 Aligned_cols=124 Identities=16% Similarity=0.150 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHh
Q 031079 26 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAM 105 (166)
Q Consensus 26 ~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~ll 105 (166)
+..++.++++.+++.+...+|++||+|+|+++|+||+||++|++++++.+..+..+++++.......+...++.+....+
T Consensus 158 ~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~~~~~ 237 (282)
T TIGR01475 158 LVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIALLALIL 237 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999998887777776655444333222222201222
Q ss_pred hHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079 106 TSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 154 (166)
Q Consensus 106 ~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~ 154 (166)
.........+..+ . +++++... .--..+...++++.+|++++++
T Consensus 238 ~~~~l~~~~~~~~-~-~~~~~~~~---~ff~~~~~l~~~~~~g~~~~~~ 281 (282)
T TIGR01475 238 IGLILAYEHYIVD-P-GDQSKIQR---AFFYANGFLSITFLIGVIIDVL 281 (282)
T ss_pred HHHHHHHHHHHcC-C-CCHHHHHH---HHHHHhHHHHHHHHHHHHHHHh
Confidence 2233333344332 1 22332222 1122345677888888887654
No 22
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.34 E-value=1.1e-11 Score=107.64 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=55.0
Q ss_pred eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHH
Q 031079 22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLL 86 (166)
Q Consensus 22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~ 86 (166)
.++++++++.+++.++++.+...+||++|+|+|++.|+||+||++|++++.++-......+.++.
T Consensus 176 g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~ 240 (331)
T PRK12392 176 SDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVF 240 (331)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHH
Confidence 35778889999999999999999999999999999999999999999999876555543444433
No 23
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.25 E-value=1.1e-10 Score=99.46 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=49.1
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHH
Q 031079 23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYS 84 (166)
Q Consensus 23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~ 84 (166)
++++..+.++ .+++++++...||+||+|+|+++||||+||++|+++++++...+..++.+
T Consensus 164 ~~~~~~l~~a--~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~ 223 (282)
T PRK12875 164 SLPPLLAVAG--GWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAA 223 (282)
T ss_pred CCcHHHHHHH--HHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHH
Confidence 3455554444 57999999999999999999999999999999999999877766555543
No 24
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.23 E-value=1.8e-10 Score=97.51 Aligned_cols=124 Identities=15% Similarity=0.091 Sum_probs=78.3
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 031079 23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL 102 (166)
Q Consensus 23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l 102 (166)
++++..++..+...+++..-..+|+++|+|+|+++|+||+||++|+++++..........+.+.+.....+..+++.. .
T Consensus 157 ~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~ 235 (281)
T TIGR01474 157 DLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGLGPVYYL-G 235 (281)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH-H
Confidence 577888888888999999999999999999999999999999999998876655444444444444333333333322 2
Q ss_pred HHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079 103 CAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 153 (166)
Q Consensus 103 ~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~ 153 (166)
..+...........++ .+++++.+ +.-+....++.++.+|++++.
T Consensus 236 ~~~~~~~~~~~~~~~~--~~~~~~~~----~~F~~~~~~~~~l~~~~~~~~ 280 (281)
T TIGR01474 236 LAAAALLLIRQIATLD--IRDPENCL----KLFKANNYVGLLLFAGIALGW 280 (281)
T ss_pred HHHHHHHHHHHHHHhC--CCCHHHHH----HHHHHhhHHHHHHHHHHHHHh
Confidence 2222222222233332 12333322 333445677777777777653
No 25
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.23 E-value=2.2e-10 Score=98.83 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=82.9
Q ss_pred eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 031079 22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIF 101 (166)
Q Consensus 22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~ 101 (166)
.+++++.++..+..-++...--.++|+||+|+|+++|+||+||++|++++++.+.......+.+.+.....+ .+++.+
T Consensus 188 g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~- 265 (314)
T PRK12878 188 GSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMGLAFWLAG-VPLLAL- 265 (314)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHHHHHHHhc-CcHHHH-
Confidence 356777777777676777777777899999999999999999999999999988666666655555444445 355555
Q ss_pred HHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079 102 LCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 153 (166)
Q Consensus 102 l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~ 153 (166)
++.+..+.. ..++..+-..++++. -++.-+.+..++.++.+|++++.
T Consensus 266 ~~~~~~~~~-l~~~~~~~~~~~~~~----~~~~F~~n~~~~~ll~~~l~~~~ 312 (314)
T PRK12878 266 LGLLAAAAH-LAWQIARLDIDDPDQ----CLRLFKSNRDAGLLIFLGLVVGG 312 (314)
T ss_pred HHHHHHHHH-HHHHHHHcccCChHH----HHHHHHHhHHHHHHHHHHHHHHh
Confidence 555554443 223322211222222 12444556788888888888764
No 26
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.20 E-value=3.1e-10 Score=96.10 Aligned_cols=124 Identities=15% Similarity=0.011 Sum_probs=78.4
Q ss_pred eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 031079 22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIF 101 (166)
Q Consensus 22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~ 101 (166)
.++++++++.+++..+++.....+|++||+|+|+++|+||+||++|++++...........+.+.......+..+++..
T Consensus 158 ~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~- 236 (282)
T PRK12848 158 GSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGLGWAYYW- 236 (282)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH-
Confidence 3577889999999999999999999999999999999999999999998877654433333333333334443333322
Q ss_pred HHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079 102 LCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA 152 (166)
Q Consensus 102 l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~ 152 (166)
...+.........+..+ .+++++.....+. +...|.++.+|++++
T Consensus 237 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~F~~----n~~~g~~l~~~~~~~ 281 (282)
T PRK12848 237 GLLVAAALFVYQQKLIR--DREREACFKAFLN----NNWVGLVLFAGIAAS 281 (282)
T ss_pred HHHHHHHHHHHHHHHcC--CCCHHHHHHHHHh----CcHHHHHHHHHHHHh
Confidence 22222222222233221 1234444433333 345777777777654
No 27
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.20 E-value=3.3e-10 Score=95.35 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=44.9
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHH
Q 031079 23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAV 79 (166)
Q Consensus 23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll 79 (166)
.+++..+++.. ..++..++..+||+||+|+||++|+||+||++|++++++......
T Consensus 152 ~~~~~~~~~~~-~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~ 207 (277)
T PRK12883 152 RIGLAGYLAIC-AFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFG 207 (277)
T ss_pred cccHHHHHHHH-HHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHH
Confidence 34555555443 566667888999999999999999999999999999998775543
No 28
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.19 E-value=1.5e-10 Score=94.20 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=47.7
Q ss_pred ehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHH
Q 031079 24 ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSV 73 (166)
Q Consensus 24 ~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ 73 (166)
.+...++.+...++++.++...||+||+|+|+++||||+++++|+++++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 144 PPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999987
No 29
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.19 E-value=4.8e-10 Score=96.06 Aligned_cols=66 Identities=20% Similarity=0.027 Sum_probs=57.1
Q ss_pred eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHH
Q 031079 22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 87 (166)
Q Consensus 22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~ 87 (166)
.++++.+++.+++.++++.+...+||+||+|+|+++|+||+||++|++++++....+..+.+...+
T Consensus 171 g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~ 236 (297)
T PRK12871 171 GQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI 236 (297)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999999999999999999999999999777666555554433
No 30
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.17 E-value=9.3e-10 Score=93.89 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=60.6
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcc
Q 031079 23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA 94 (166)
Q Consensus 23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~ 94 (166)
+++++.++.++++++++..--..|+++|+|+|+++|+||+||++|++++++.........+.+.+.....+.
T Consensus 159 ~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (291)
T PRK12886 159 TIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAG 230 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567889999999999999987889999999999999999999999999998887776666665555554443
No 31
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.16 E-value=6.1e-10 Score=94.92 Aligned_cols=129 Identities=12% Similarity=-0.043 Sum_probs=80.9
Q ss_pred eeeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Q 031079 21 CLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCI 100 (166)
Q Consensus 21 ~~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l 100 (166)
..++++++++.++++.+++.+--.+|+++|+|.|+++|.||+|+++|++.+..+..........+.......|..+++..
T Consensus 161 ~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~ 240 (290)
T PRK12870 161 TGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLELHLPFWI 240 (290)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34677888999999999999999999999999999999999999999998886655333333333333344443333322
Q ss_pred HHHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079 101 FLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 154 (166)
Q Consensus 101 ~l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~ 154 (166)
...+...........+++..++ ++... ..-+.+..+|.++.+|++++.+
T Consensus 241 -~~~~~~~~l~~~~~~~~~~~~~-~~~~~---~~F~~n~~~g~~~~~~~~~~~~ 289 (290)
T PRK12870 241 -GLAIAAVLWARQYRRLRQANLP-PLAYG---QLFLQNVWIGFLLLAGMILGSL 289 (290)
T ss_pred -HHHHHHHHHHHHHHHhcccCCC-hHHHH---HHHHHhhHHHHHHHHHHHHHhh
Confidence 2222222222222333222122 22222 2223456788888888887654
No 32
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.11 E-value=1.6e-09 Score=91.60 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=55.4
Q ss_pred eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHH
Q 031079 22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYS 84 (166)
Q Consensus 22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~ 84 (166)
.+++++.++.++++++++.+.+++|+++|+|+|+++|+||+||+.|++++++....+..+...
T Consensus 155 g~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~ 217 (279)
T PRK12869 155 GSLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIP 217 (279)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999999999999999999999877655544333
No 33
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.10 E-value=2.9e-09 Score=90.93 Aligned_cols=126 Identities=13% Similarity=0.062 Sum_probs=77.7
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 031079 23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL 102 (166)
Q Consensus 23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l 102 (166)
.++++.++.++++.+++.....+|++||+|.|+++|+||+||++|++++++........+.++...........++.+ +
T Consensus 164 ~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 242 (291)
T PRK12874 164 EIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGLFAY-L 242 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-H
Confidence 567778888999999999999999999999999999999999999999987654444433333222221111222222 2
Q ss_pred H-HhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031079 103 C-AMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL 155 (166)
Q Consensus 103 ~-ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~~ 155 (166)
+ .+.........+..+ .++++ ...... ......|+++.++++++.++
T Consensus 243 ~~~~~~~~l~~~~~~~~--~~~~~-~~~~ff---~sn~~l~~l~~~~~~~~~~~ 290 (291)
T PRK12874 243 GVIVSALILLYEHYLVR--KDFKK-IDKAFF---TLNGYLGIVFFIFIVLDVLF 290 (291)
T ss_pred HHHHHHHHHHHHHHHhc--CCChH-HHHHHH---HHHHHHHHHHHHHHHHHHhh
Confidence 2 222222333333332 12222 222222 22455778888888877654
No 34
>PLN02878 homogentisate phytyltransferase
Probab=99.04 E-value=5.2e-09 Score=89.26 Aligned_cols=65 Identities=25% Similarity=0.281 Sum_probs=56.1
Q ss_pred ehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHH
Q 031079 24 ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFA 88 (166)
Q Consensus 24 ~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~ 88 (166)
.+...+.+.+-+.+...++..+|++||+|+||+.|+||+|||+|++++.++...++..+|+..+.
T Consensus 154 ~~~~~~~~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~ 218 (280)
T PLN02878 154 FTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAIL 218 (280)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHH
Confidence 44555666656777888999999999999999999999999999999999999999999985443
No 35
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.00 E-value=7.7e-09 Score=87.20 Aligned_cols=92 Identities=9% Similarity=0.051 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHH-HHHHh
Q 031079 27 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCI-FLCAM 105 (166)
Q Consensus 27 ~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l-~l~ll 105 (166)
..++..+..-+++.+...+|+++|+|+|+++|+||+||++|++++++..........++.......+...++-+ ....+
T Consensus 155 ~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 234 (279)
T PRK09573 155 RIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIIC 234 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666788889999999999999999999999999998887666665555444443332222221 02233
Q ss_pred hHHhHHHHHHHHH
Q 031079 106 TSPIGKLVVSYVE 118 (166)
Q Consensus 106 ~lPla~~~~~~~~ 118 (166)
..+......+..+
T Consensus 235 ~~~~l~~~~~~~~ 247 (279)
T PRK09573 235 DILFIIAMLILLK 247 (279)
T ss_pred hHHHHHHHHHHHc
Confidence 4455555555554
No 36
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=98.96 E-value=1.4e-08 Score=85.40 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHH
Q 031079 26 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 87 (166)
Q Consensus 26 ~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~ 87 (166)
...++.++...+.+.+...+||+||+|+|+++|+||+||++|+++++++.........++..
T Consensus 157 ~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~ 218 (276)
T PRK12882 157 LALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASP 218 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34566667677777788899999999999999999999999999999877666555544443
No 37
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=98.91 E-value=1.7e-08 Score=86.68 Aligned_cols=117 Identities=18% Similarity=0.102 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHh------cCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHH
Q 031079 29 LSASLLVGLTTSLILFC------SHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLS-RALPLSCIF 101 (166)
Q Consensus 29 ll~sl~~Gll~~aIL~v------NN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~-g~~p~~~l~ 101 (166)
.+.+.|..+..++++.+ |+++|+|.|+++|.||+|+++| +++++....+..++.++....... +..+++...
T Consensus 174 ~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~~y~~~ 252 (300)
T PRK13106 174 VLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGPIAIAA 252 (300)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 33445566666667744 9999999999999999999999 889887766666655544433322 222222110
Q ss_pred HHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031079 102 LCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL 155 (166)
Q Consensus 102 l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~~ 155 (166)
+.....-+..+ .+.+. .+ ++.+... +.+...|+++.+|++++.++
T Consensus 253 ~~~~~~~l~~~-~~~~~---~~-~~~~~~F----~~n~~ig~~~~~~~~~~~~~ 297 (300)
T PRK13106 253 TILHGLIMAYA-YYLAS---KK-GDFGRAF----YYNIYSSIVLGLGIIIDVLL 297 (300)
T ss_pred HHHHHHHHHHH-HHHhC---Cc-hHHHHHH----HHccHHHHHHHHHHHHHHHH
Confidence 11111112211 12221 11 3333332 44567888888888887764
No 38
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=98.87 E-value=4.7e-08 Score=82.49 Aligned_cols=59 Identities=12% Similarity=-0.045 Sum_probs=48.6
Q ss_pred eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHH
Q 031079 22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVM 80 (166)
Q Consensus 22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~ 80 (166)
.+++++.++.++++.++...-.....++|+|+||++|+||+|+++|+++++..-....+
T Consensus 154 g~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~ 212 (280)
T TIGR01473 154 GSISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTA 212 (280)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHH
Confidence 46778888889988888888776777899999999999999999999988765443333
No 39
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=98.85 E-value=7.7e-08 Score=82.09 Aligned_cols=127 Identities=12% Similarity=0.020 Sum_probs=76.3
Q ss_pred eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 031079 22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIF 101 (166)
Q Consensus 22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~ 101 (166)
..+++++++.+++..++...-..+++++|+|+|+++|.||+|+++|++++++.-...........++....|...++-+.
T Consensus 163 g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 242 (296)
T PRK04375 163 GSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGLLYLV 242 (296)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 35788899999999999999999999999999999999999999999988765443333333333333343432333220
Q ss_pred HH-HhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079 102 LC-AMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 154 (166)
Q Consensus 102 l~-ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~ 154 (166)
.. .+.........+..++ ++++...... +....++.++.++++++.+
T Consensus 243 ~~~~~~~~~l~~~~~~~~~--~~~~~~~~~F----~~s~~~~~~i~~~~~~~~~ 290 (296)
T PRK04375 243 VALLLGAWFLYYAWRLYRK--DDRKWARKLF----RYSINYLTLLFVALLVDHL 290 (296)
T ss_pred HHHHHHHHHHHHHHHHhcC--cCHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 11 1222222333344432 2233333222 3334555555566666544
No 40
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=98.40 E-value=7.4e-06 Score=69.44 Aligned_cols=72 Identities=19% Similarity=0.098 Sum_probs=57.9
Q ss_pred ehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcch
Q 031079 24 ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRAL 95 (166)
Q Consensus 24 ~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~ 95 (166)
.+...++..+...+.+.+.=..+.+.|+|.||+.|.||+|+++|++++..+-......+.+...+....+..
T Consensus 165 ~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 236 (289)
T COG0382 165 LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLL 236 (289)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 578888899999999999999999999999999999999999999999987766664443344444444433
No 41
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=98.37 E-value=7.1e-06 Score=70.17 Aligned_cols=104 Identities=16% Similarity=0.115 Sum_probs=55.5
Q ss_pred HHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHhhHHhHHHHHHHHHhh
Q 031079 42 ILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIG-LSRALPLSCIFLCAMTSPIGKLVVSYVEEN 120 (166)
Q Consensus 42 IL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v-~~g~~p~~~l~l~ll~lPla~~~~~~~~~~ 120 (166)
+.+++ .|+|.||++|.||+|+++|++.+..+ ..+....+.+..... ..+..+++.......+. ....-.+.+ .
T Consensus 184 ~~ya~--~D~e~D~~~Gi~sl~v~~G~~~~~~i-~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-~l~~~~~~v--~ 257 (289)
T PLN02809 184 TIYAH--QDKEDDLKVGVKSTALRFGDDTKLWL-TGFGAASIGGLALSGYNAGLGWPYYAGLAAAAG-HLAWQIQTV--D 257 (289)
T ss_pred HHHHH--hchhhHHhCCCcccchhhcHHHHHHH-HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHHHHHHc--C
Confidence 44444 59999999999999999999844433 345555555443322 22322222110111111 111112222 1
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031079 121 HKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL 155 (166)
Q Consensus 121 ~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~~ 155 (166)
.+++++.+.. -+.+...|+++.+|+++++.+
T Consensus 258 ~~~~~~~~~~----F~~n~~~g~~~~~~~~~~~~~ 288 (289)
T PLN02809 258 LSSRADCNRK----FVSNKWFGAIVFAGIVLGKLF 288 (289)
T ss_pred CCCHHHHHHH----HHhCCHHHHHHHHHHHHHHhh
Confidence 2334544433 233456888888888887654
No 42
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=98.37 E-value=8.9e-06 Score=69.62 Aligned_cols=124 Identities=10% Similarity=0.058 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHh
Q 031079 26 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAM 105 (166)
Q Consensus 26 ~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~ll 105 (166)
+.+++..+.+.+++..==.+..+.|+|.|++.|-||+|+++|++.+.++-..+..++.++..........+++ + ++++
T Consensus 159 ~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~y-~-~~~~ 236 (286)
T PRK12895 159 LLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIRTLWY-L-AALI 236 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHhhHHH-H-HHHH
Confidence 3445667777777777677889999999999999999999999988755433433333322222221112211 1 2211
Q ss_pred hHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031079 106 TSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL 155 (166)
Q Consensus 106 ~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~~ 155 (166)
.....-.++...-..+++++.+.... +.+...|+++.+|.+++..+
T Consensus 237 -~~~~~l~~q~~~~~~~~~~~~~~~~F---~~N~~ig~~~~~~~~~~~~~ 282 (286)
T PRK12895 237 -IIYTLVIYQHLIIDPRNPINKRMSFF---NANSFIGFVFLIGIILSLRF 282 (286)
T ss_pred -HHHHHHHHHHHHhcCCCHHHHHHHHH---HHcCHHHHHHHHHHHHHhcc
Confidence 11111112211111233444433222 23456788888888887654
No 43
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=98.18 E-value=5e-05 Score=65.59 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=27.9
Q ss_pred CCCCchhhHhcCCcccceecCcccHHHHHHHHHHH
Q 031079 47 HFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMI 81 (166)
Q Consensus 47 N~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ 81 (166)
-..|+|.||+.|.||+|+++|++.+...-..+..+
T Consensus 193 a~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l 227 (300)
T PRK12876 193 AIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIA 227 (300)
T ss_pred HHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHH
Confidence 39999999999999999999999885444333333
No 44
>PRK13595 ubiA prenyltransferase; Provisional
Probab=98.10 E-value=6e-05 Score=64.91 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhhHHhHHHHHH
Q 031079 36 GLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVS 115 (166)
Q Consensus 36 Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~ll~lPla~~~~~ 115 (166)
.+.+.+-=..-.+.|+|.||+.|.||+|+++|++++.++-..+.+++-++. ... ++... +. +.+|......+
T Consensus 179 ~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~---~~~---~~~~~-~~-~~~~~~~~~~~ 250 (292)
T PRK13595 179 MAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALL---WPV---SRLTA-LA-LWLICGGMALA 250 (292)
T ss_pred HHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHH---HHh---cchHH-HH-HHHHHHHHHHH
Confidence 344455555677899999999999999999999999877555444442221 221 22222 22 44454544445
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079 116 YVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLI 150 (166)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lgll 150 (166)
+++ .+++|+-+...+.-.-+..+.|.+.+.-++
T Consensus 251 -~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 283 (292)
T PRK13595 251 -LWR-RPTPETAHRLYPLSIVTPWIVGTVAGVLLV 283 (292)
T ss_pred -Hhc-CCCHHHHhccchHHHHHhHHHHHHHHHHHH
Confidence 443 345677777666655556666655444333
No 45
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=98.03 E-value=0.00017 Score=62.14 Aligned_cols=53 Identities=13% Similarity=0.030 Sum_probs=45.8
Q ss_pred eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHH
Q 031079 22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVV 74 (166)
Q Consensus 22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~l 74 (166)
.++++..++....+.++...=..+-.+.|+|+|+++|.||+||+.|++++++.
T Consensus 166 g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~ 218 (306)
T PRK13362 166 GQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLH 218 (306)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHH
Confidence 35678888888888888888777778889999999999999999999988864
No 46
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=97.58 E-value=0.0014 Score=56.38 Aligned_cols=41 Identities=20% Similarity=0.075 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHH
Q 031079 33 LLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVV 74 (166)
Q Consensus 33 l~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~l 74 (166)
+.+-+++..==.+=-+.|+|.|+++|-|++|++.|+ ++...
T Consensus 177 ~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~ 217 (294)
T PRK12873 177 LATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS-NALKT 217 (294)
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh-hhHHH
Confidence 444444433212334559999999999999999997 44443
No 47
>PRK13592 ubiA prenyltransferase; Provisional
Probab=96.61 E-value=0.071 Score=46.24 Aligned_cols=41 Identities=7% Similarity=0.128 Sum_probs=32.3
Q ss_pred HhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHH
Q 031079 44 FCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLL 86 (166)
Q Consensus 44 ~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~ 86 (166)
.+-.+|| |+|++ |-+|+|+++|.++|.++-..+.+++.+..
T Consensus 193 I~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s 233 (299)
T PRK13592 193 VCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILTN 233 (299)
T ss_pred HHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHHh
Confidence 4678999 87775 68999999999999988777766665543
No 48
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=95.55 E-value=0.49 Score=40.03 Aligned_cols=39 Identities=21% Similarity=-0.012 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC---cccce
Q 031079 26 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPLV 64 (166)
Q Consensus 26 ~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK---rTLaV 64 (166)
+..++..+...+..++....|++.|+|-||+.-+ |-+|-
T Consensus 47 ~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~s 88 (289)
T COG0382 47 KLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPS 88 (289)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCC
Confidence 4677778888888999999999999999998766 44544
No 49
>PLN02776 prenyltransferase
Probab=94.88 E-value=1 Score=39.70 Aligned_cols=56 Identities=7% Similarity=-0.042 Sum_probs=36.8
Q ss_pred eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCccccee--cCcccHHHHHHH
Q 031079 22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVR--LGTERGSVVVKW 77 (166)
Q Consensus 22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVr--LG~~~A~~ly~~ 77 (166)
.++++++++....+-++...==+.==+.|.|+|+++|.+.++|- .|++.++.....
T Consensus 147 g~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~ 204 (341)
T PLN02776 147 GQLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRN 204 (341)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHH
Confidence 46677788777777777652111112457779999999999884 456666655433
No 50
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=94.75 E-value=1.4 Score=36.92 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcc
Q 031079 26 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTE 69 (166)
Q Consensus 26 ~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~ 69 (166)
+..++..+..-+..++....||+=|+|.|++. |+.=|.-=|+-
T Consensus 37 ~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~i 79 (279)
T PRK12884 37 DEALLGFLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRI 79 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCC
Confidence 44555666666777888899999999999988 66666656653
No 51
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=94.50 E-value=0.2 Score=43.02 Aligned_cols=50 Identities=10% Similarity=-0.091 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCc---ccHHHHHHHHHHHHH
Q 031079 33 LLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGT---ERGSVVVKWAVMILY 83 (166)
Q Consensus 33 l~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~---~~A~~ly~~ll~~ay 83 (166)
+...+..++.-..||+-|.|.|++.+++ =++.=|+ +.+......+..++.
T Consensus 61 l~~~l~~~~~n~~NDy~D~d~D~~~~~~-Rpi~~G~is~~~a~~~~~~l~~~~~ 113 (306)
T TIGR02056 61 LSGPCLTGYTQTINDFYDRDIDAINEPY-RPIPSGAISEPEVITQIVLLFIAGI 113 (306)
T ss_pred HHHHHHHHHHHHHHhHhhhhhhccCCCC-CCCCCCccCHHHHHHHHHHHHHHHH
Confidence 3445666778899999999999987643 3333344 444433333333333
No 52
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=94.16 E-value=0.39 Score=41.41 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHhc-CC--cccc-eecCcccHHHHHHHHHHHH
Q 031079 28 VLSASLLVGLTTSLILFCSHFHQVEGDRNV-GK--MSPL-VRLGTERGSVVVKWAVMIL 82 (166)
Q Consensus 28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~a-GK--rTLa-VrLG~~~A~~ly~~ll~~a 82 (166)
.+++-+...+.+++.-..||+-|+|.||+. .| |-+| =++..+.|..+...+..++
T Consensus 48 ~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~ 106 (295)
T PRK12324 48 VLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVAS 106 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHH
Confidence 445555556667889999999999999995 22 3332 2344444444433333333
No 53
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=94.10 E-value=1.6 Score=37.62 Aligned_cols=43 Identities=14% Similarity=-0.007 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC-cccceecCcc
Q 031079 27 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTE 69 (166)
Q Consensus 27 ~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK-rTLaVrLG~~ 69 (166)
..++..+...+..++-...||+-|+|-|++.-| |.=|.-=|+-
T Consensus 45 ~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~i 88 (294)
T PRK12873 45 LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKI 88 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCC
Confidence 355677777888899999999999999998776 4555544543
No 54
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=94.05 E-value=1.2 Score=37.71 Aligned_cols=45 Identities=11% Similarity=-0.005 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC-cccceecCcccHH
Q 031079 28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTERGS 72 (166)
Q Consensus 28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK-rTLaVrLG~~~A~ 72 (166)
.++..+...+..++....||+-|+|-|++..| ++=|+-=|+-..+
T Consensus 47 ~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~ 92 (285)
T PRK12847 47 LVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVK 92 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHH
Confidence 45566666778889999999999999987443 2233333543333
No 55
>PRK08238 hypothetical protein; Validated
Probab=93.30 E-value=1.3 Score=40.65 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhhHhcC-Cccccee---cCcccHHHHHHHHHHHH
Q 031079 27 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVG-KMSPLVR---LGTERGSVVVKWAVMIL 82 (166)
Q Consensus 27 ~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aG-KrTLaVr---LG~~~A~~ly~~ll~~a 82 (166)
..+++.+..++.++++-..||+-|+|.||+.- ||.=|.- +..+.|..+...++.++
T Consensus 227 ~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~ 286 (479)
T PRK08238 227 AALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAG 286 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 45566777888999999999999999999973 3333433 34444444434444444
No 56
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=92.97 E-value=2.8 Score=35.25 Aligned_cols=31 Identities=6% Similarity=-0.052 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhhHhc
Q 031079 27 TVLSASLLVGLTTSLILFCSHFHQVEGDRNV 57 (166)
Q Consensus 27 ~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~a 57 (166)
..++..+...+..++.-..||+-|+|.|++.
T Consensus 37 ~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~ 67 (282)
T TIGR01475 37 TLILILIAAVSARTAAMAFNRIIDRAIDARN 67 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 4567777788888999999999999999987
No 57
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=92.90 E-value=4.1 Score=34.24 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC-cccce-ecCcccHHHHHHHHHHHHH
Q 031079 28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLV-RLGTERGSVVVKWAVMILY 83 (166)
Q Consensus 28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK-rTLaV-rLG~~~A~~ly~~ll~~ay 83 (166)
.++..+...+..++....||+-|+|.|++..+ |.+|- ++-++.|..+...+..++.
T Consensus 39 ~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~ 96 (279)
T PRK09573 39 IILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGL 96 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHH
Confidence 55666777788899999999999999997543 33322 4445555544444444443
No 58
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=92.50 E-value=3.4 Score=34.55 Aligned_cols=32 Identities=13% Similarity=0.033 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC
Q 031079 28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK 59 (166)
Q Consensus 28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK 59 (166)
.+...+..-+..++.-..||+-|+|.|+...+
T Consensus 38 ~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~ 69 (285)
T PRK12872 38 SWLLLLITFLIAAAVYIINYLTDLEEDIINKP 69 (285)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence 45566667788888999999999999987544
No 59
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=92.29 E-value=5.3 Score=34.21 Aligned_cols=48 Identities=10% Similarity=-0.116 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC-cccceecCcccHHHHH
Q 031079 28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTERGSVVV 75 (166)
Q Consensus 28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK-rTLaVrLG~~~A~~ly 75 (166)
.++..+..-+..++-...||+=|+|-|++.-| ++-|.-=|+-..+...
T Consensus 47 l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~ 95 (289)
T PLN02809 47 LALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGV 95 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHH
Confidence 44566666678889999999999999998765 4556656765444333
No 60
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=91.96 E-value=2.1 Score=35.90 Aligned_cols=54 Identities=15% Similarity=-0.115 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecC---cccHHHHHHHHHHHH
Q 031079 28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLG---TERGSVVVKWAVMIL 82 (166)
Q Consensus 28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG---~~~A~~ly~~ll~~a 82 (166)
.++.-+...+..++....||+=|+|.|+... ++=|.-=| ++.|..+...+.+++
T Consensus 40 ~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g 96 (276)
T PRK12882 40 TGLAFAAVFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAG 96 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence 4566666777788899999999999999643 44444444 344443333333333
No 61
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=91.80 E-value=5 Score=33.93 Aligned_cols=32 Identities=9% Similarity=-0.095 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC
Q 031079 28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK 59 (166)
Q Consensus 28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK 59 (166)
.++..+..-+..++-...||+-|+|-|++..|
T Consensus 42 ~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~R 73 (281)
T TIGR01474 42 LGLFTVGAILMRGAGCVINDIWDRDFDPQVER 73 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhcccccCCc
Confidence 44455555667788889999999999986543
No 62
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=91.78 E-value=2.9 Score=35.91 Aligned_cols=31 Identities=6% Similarity=-0.056 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhhHhc
Q 031079 27 TVLSASLLVGLTTSLILFCSHFHQVEGDRNV 57 (166)
Q Consensus 27 ~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~a 57 (166)
..++..+...+..++-...||+=|+|-|++.
T Consensus 38 ~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~ 68 (286)
T PRK12895 38 KILLILIAAVSARTSAMSINRIEGLRYDMIN 68 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhcccCCC
Confidence 3445555666778889999999999999887
No 63
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=91.45 E-value=1.1 Score=38.55 Aligned_cols=46 Identities=7% Similarity=-0.075 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCCchhhHhcCCccc-c-eecCcccHHHHHHHHHHHHH
Q 031079 38 TTSLILFCSHFHQVEGDRNVGKMSP-L-VRLGTERGSVVVKWAVMILY 83 (166)
Q Consensus 38 l~~aIL~vNN~RDie~Dr~aGKrTL-a-VrLG~~~A~~ly~~ll~~ay 83 (166)
..++.-..||+-|.|.|++.+++-. + =++.++.+..+...+..++.
T Consensus 77 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~ 124 (314)
T PRK07566 77 LCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGL 124 (314)
T ss_pred HHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHH
Confidence 4577889999999999997654322 2 14455555555544444443
No 64
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=91.30 E-value=3.8 Score=32.95 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=24.0
Q ss_pred eehHHHH-HHHHHHHHHHHHHHHhcCCCCchhhHhc
Q 031079 23 SITATVL-SASLLVGLTTSLILFCSHFHQVEGDRNV 57 (166)
Q Consensus 23 ~~~~~~l-l~sl~~Gll~~aIL~vNN~RDie~Dr~a 57 (166)
..++..+ ...+.+-+...++-..|++-|.|.|+..
T Consensus 19 ~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~ 54 (257)
T PF01040_consen 19 PFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIH 54 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCccc
Confidence 3444333 3333334667788888999999999995
No 65
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=91.18 E-value=2.4 Score=36.57 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=17.9
Q ss_pred HHhcCCCCchhhHhcCCcccceecCc
Q 031079 43 LFCSHFHQVEGDRNVGKMSPLVRLGT 68 (166)
Q Consensus 43 L~vNN~RDie~Dr~aGKrTLaVrLG~ 68 (166)
.-.||+-|+|.|+.. |++.|+-=|+
T Consensus 70 ~~iNd~~D~~iD~in-kp~rPiasG~ 94 (308)
T PRK12887 70 VGLNQLTDIEIDRIN-KPHLPLAAGE 94 (308)
T ss_pred HHHhhhhhHHHHhcC-CCCCCcCCcc
Confidence 448999999999964 5666653343
No 66
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=89.99 E-value=11 Score=31.87 Aligned_cols=29 Identities=17% Similarity=-0.011 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhhHhcC
Q 031079 30 SASLLVGLTTSLILFCSHFHQVEGDRNVG 58 (166)
Q Consensus 30 l~sl~~Gll~~aIL~vNN~RDie~Dr~aG 58 (166)
+..+..-+..++-...||+-|+|-|++..
T Consensus 46 l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~ 74 (282)
T PRK12848 46 VFVLGVFLMRAAGCVINDYADRDFDGHVK 74 (282)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhccCCCCC
Confidence 33344446678889999999999998544
No 67
>PLN02776 prenyltransferase
Probab=89.87 E-value=9.3 Score=33.78 Aligned_cols=33 Identities=9% Similarity=-0.023 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC
Q 031079 27 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK 59 (166)
Q Consensus 27 ~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK 59 (166)
..++..+...+..++=...||+-|+|-|++.-|
T Consensus 30 ~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~R 62 (341)
T PLN02776 30 GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKR 62 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCC
Confidence 355667778888899999999999999987543
No 68
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=89.54 E-value=11 Score=32.19 Aligned_cols=32 Identities=6% Similarity=-0.145 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhhHhcC
Q 031079 27 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVG 58 (166)
Q Consensus 27 ~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aG 58 (166)
..++..+..-+..++-...||+-|+|-|++.-
T Consensus 43 ~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~ 74 (291)
T PRK12886 43 QLDWILMAMVGARTAAMGFNRLIDAEIDARNP 74 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCC
Confidence 35566677777778888899999999998764
No 69
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=89.20 E-value=6.5 Score=33.21 Aligned_cols=47 Identities=11% Similarity=0.018 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC---cccce-ecCcccHHHH
Q 031079 28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPLV-RLGTERGSVV 74 (166)
Q Consensus 28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK---rTLaV-rLG~~~A~~l 74 (166)
.++..+...+..++-...||+-|+|-|++.-| |.+|- |+.++.|..+
T Consensus 38 ~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~ 88 (279)
T PRK12869 38 LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAV 88 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHH
Confidence 44556666677889999999999999998543 44432 3344444433
No 70
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=88.85 E-value=3.9 Score=34.30 Aligned_cols=47 Identities=13% Similarity=-0.057 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHhcCCccccee---cCcccHHHHHHHHHH
Q 031079 33 LLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVR---LGTERGSVVVKWAVM 80 (166)
Q Consensus 33 l~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVr---LG~~~A~~ly~~ll~ 80 (166)
+..-+..++.-..||+-|+|.|+... ++=|+- +-++.|......+..
T Consensus 44 ~~~~~~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~ 93 (277)
T PRK12883 44 LVVYLGCSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLFA 93 (277)
T ss_pred HHHHHHHHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHHH
Confidence 33334447788999999999999754 333333 444455444433333
No 71
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=88.80 E-value=13 Score=31.19 Aligned_cols=54 Identities=9% Similarity=0.043 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHhcC---Ccccce-ecCcccHHHHHHHHHHH
Q 031079 28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG---KMSPLV-RLGTERGSVVVKWAVMI 81 (166)
Q Consensus 28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aG---KrTLaV-rLG~~~A~~ly~~ll~~ 81 (166)
.++..+..-+..++....||+-|+|-|++.- +|.+|- ++-++.|..+...+..+
T Consensus 37 ~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~ 94 (280)
T TIGR01473 37 LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVL 94 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 4556666667789999999999999999743 243332 33444444443333333
No 72
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=88.05 E-value=15 Score=31.72 Aligned_cols=32 Identities=6% Similarity=-0.206 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhhHhc
Q 031079 26 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNV 57 (166)
Q Consensus 26 ~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~a 57 (166)
+..++..+..-+..++-...||+-|+|-|++.
T Consensus 72 ~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~ 103 (314)
T PRK12878 72 WHLFLFFVGAIAMRGAGCTYNDIVDRDIDAKV 103 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 34556666666778888999999999999864
No 73
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=87.71 E-value=3.5 Score=34.64 Aligned_cols=47 Identities=9% Similarity=-0.079 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCCCchhhHhcCCcccce--ecCcccHHHHHHHHHHHH
Q 031079 36 GLTTSLILFCSHFHQVEGDRNVGKMSPLV--RLGTERGSVVVKWAVMIL 82 (166)
Q Consensus 36 Gll~~aIL~vNN~RDie~Dr~aGKrTLaV--rLG~~~A~~ly~~ll~~a 82 (166)
-+..++.-.+||+-|.|.|++.+++-... ++-++.++.+...+..++
T Consensus 48 ~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~ 96 (283)
T TIGR01476 48 PLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAG 96 (283)
T ss_pred HHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 34556677899999999999876433222 233444444444433333
No 74
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=87.48 E-value=4.2 Score=34.72 Aligned_cols=19 Identities=11% Similarity=-0.025 Sum_probs=15.8
Q ss_pred HhcCCCCchhhHhcCCccc
Q 031079 44 FCSHFHQVEGDRNVGKMSP 62 (166)
Q Consensus 44 ~vNN~RDie~Dr~aGKrTL 62 (166)
.+||+-|+|.||+.-||..
T Consensus 63 ~iND~~D~D~Dr~~prk~~ 81 (282)
T PRK12875 63 GVNDVFDADTDELNPKKDR 81 (282)
T ss_pred cchhhhhhhccccCCCccC
Confidence 3799999999998777753
No 75
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=87.17 E-value=19 Score=31.09 Aligned_cols=30 Identities=10% Similarity=0.011 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHhc
Q 031079 28 VLSASLLVGLTTSLILFCSHFHQVEGDRNV 57 (166)
Q Consensus 28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~a 57 (166)
.++..+...+..++-...||+=|+|-|++.
T Consensus 51 l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~ 80 (300)
T PRK13106 51 LILIFLALFFLRTAGMTNDNLADLEIDAKN 80 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhccccCC
Confidence 456667777888888999999999999876
No 76
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=87.13 E-value=4.1 Score=35.67 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCCchhhHhcCCcccce---ecCcccHHHHHHHHHHHHHHH
Q 031079 39 TSLILFCSHFHQVEGDRNVGKMSPLV---RLGTERGSVVVKWAVMILYSL 85 (166)
Q Consensus 39 ~~aIL~vNN~RDie~Dr~aGKrTLaV---rLG~~~A~~ly~~ll~~ay~~ 85 (166)
+++--.+||+=|+|.|+..+ ||=|+ ++-++.+..++..+..++.++
T Consensus 63 ~~a~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~~l 111 (331)
T PRK12392 63 TGFSQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAIGL 111 (331)
T ss_pred HHHHhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHHHH
Confidence 34556799999999998754 44433 334555555555555555433
No 77
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=87.10 E-value=18 Score=31.39 Aligned_cols=42 Identities=5% Similarity=-0.049 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC-cccceecCcc
Q 031079 28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTE 69 (166)
Q Consensus 28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK-rTLaVrLG~~ 69 (166)
.++..+.+-+.-++=...||+-|+|-|++.-| +.=|.-=|+=
T Consensus 49 ~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~i 91 (300)
T PRK12876 49 ISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLL 91 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCC
Confidence 45777777777888899999999999988764 2333333553
No 78
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=86.53 E-value=19 Score=30.69 Aligned_cols=35 Identities=6% Similarity=0.031 Sum_probs=24.9
Q ss_pred ehHH-HHHHHHHHHHHHHHHHHhcCCCCchhhHhcC
Q 031079 24 ITAT-VLSASLLVGLTTSLILFCSHFHQVEGDRNVG 58 (166)
Q Consensus 24 ~~~~-~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aG 58 (166)
.++. .++..+...+..++-...||+=|+|-|++.-
T Consensus 44 ~~~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~ 79 (291)
T PRK12874 44 FGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNP 79 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Confidence 3444 3444555556667778899999999998874
No 79
>PLN00012 chlorophyll synthetase; Provisional
Probab=86.25 E-value=6.1 Score=35.22 Aligned_cols=29 Identities=14% Similarity=-0.031 Sum_probs=21.1
Q ss_pred HHHHH-HHHHHHHHHHhcCCCCchhhHhcC
Q 031079 30 SASLL-VGLTTSLILFCSHFHQVEGDRNVG 58 (166)
Q Consensus 30 l~sl~-~Gll~~aIL~vNN~RDie~Dr~aG 58 (166)
++.+. ..++.++.-.+||+-|.|.|++.+
T Consensus 126 l~~ll~~~L~~~~an~iNDy~D~~iD~~~~ 155 (375)
T PLN00012 126 VCMLMSGPFLTGYTQTINDWYDREIDAINE 155 (375)
T ss_pred HHHHHHHHHHHHHHHHHHCeecHhhhccCC
Confidence 33443 445556688899999999998875
No 80
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=85.04 E-value=12 Score=31.79 Aligned_cols=31 Identities=16% Similarity=-0.068 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHhcC
Q 031079 28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG 58 (166)
Q Consensus 28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aG 58 (166)
.++..+..-+..++-...||+-|+|-|++..
T Consensus 48 ~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~ 78 (290)
T PRK12870 48 VGIIILGALATSAAGCVVNDLWDRDIDPQVE 78 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhccCCCCC
Confidence 3444555556788889999999999997643
No 81
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=84.88 E-value=23 Score=30.09 Aligned_cols=55 Identities=9% Similarity=0.012 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHhcC---Ccccc-eecCcccHHHHHHHHHHHH
Q 031079 28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG---KMSPL-VRLGTERGSVVVKWAVMIL 82 (166)
Q Consensus 28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aG---KrTLa-VrLG~~~A~~ly~~ll~~a 82 (166)
.++..+..-+..++-...||+-|+|-|++.- .|.+| =|+.++.|..+...+..++
T Consensus 46 ~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g 104 (296)
T PRK04375 46 LLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLG 104 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 4455566667788889999999999999753 23332 2344455544444444333
No 82
>PRK13595 ubiA prenyltransferase; Provisional
Probab=84.68 E-value=8.7 Score=33.25 Aligned_cols=30 Identities=17% Similarity=-0.003 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhHhcCCcc
Q 031079 32 SLLVGLTTSLILFCSHFHQVEGDRNVGKMS 61 (166)
Q Consensus 32 sl~~Gll~~aIL~vNN~RDie~Dr~aGKrT 61 (166)
..-.+.+...+--+|++-|+|.|++.-|+-
T Consensus 53 ~~~~~p~n~~~~giND~fD~eiDa~Npr~~ 82 (292)
T PRK13595 53 LYLTLPFNLLIYGLNDLADRETDAASPRKG 82 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCCCCC
Confidence 334444455677899999999998776664
No 83
>PRK13592 ubiA prenyltransferase; Provisional
Probab=84.57 E-value=11 Score=32.78 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=40.2
Q ss_pred eeeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCccc--ceecCcccHHHHHHHHHHHHHH
Q 031079 21 CLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSP--LVRLGTERGSVVVKWAVMILYS 84 (166)
Q Consensus 21 ~~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTL--aVrLG~~~A~~ly~~ll~~ay~ 84 (166)
.+....+.+++.+.+-+.+++-..+|++-|+|-||..--.-. .=|+-++.|+.+-..+.+.+..
T Consensus 41 ~~~~~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~ 106 (299)
T PRK13592 41 SFRIGIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVL 106 (299)
T ss_pred CCCCchHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 344555566767766677788899999999999986543222 1244555565444455444444
No 84
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=83.70 E-value=28 Score=30.03 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=26.1
Q ss_pred ehHH-HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC
Q 031079 24 ITAT-VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK 59 (166)
Q Consensus 24 ~~~~-~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK 59 (166)
.++. .++..+...+..++....||+-|+|-|++.-|
T Consensus 44 ~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~R 80 (306)
T PRK13362 44 VDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQR 80 (306)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCC
Confidence 4443 33444566677889999999999999987543
No 85
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=80.19 E-value=9.8 Score=32.69 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=20.6
Q ss_pred eehHHHHH-HHHHHHHHHHHHHHhcCCCCchhhHh
Q 031079 23 SITATVLS-ASLLVGLTTSLILFCSHFHQVEGDRN 56 (166)
Q Consensus 23 ~~~~~~ll-~sl~~Gll~~aIL~vNN~RDie~Dr~ 56 (166)
..++..++ +.+...+..++--..||+-|+|.|+.
T Consensus 37 ~~~~~~~~l~~l~~~l~~~ag~~iND~~D~~~D~~ 71 (297)
T PRK12871 37 GFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDRL 71 (297)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcc
Confidence 34554333 23333333444458999999999975
No 86
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=79.71 E-value=11 Score=32.14 Aligned_cols=39 Identities=10% Similarity=-0.033 Sum_probs=26.2
Q ss_pred eehHHHHHHH-HHHHHHHHHHHHhcCCCCchhhHhcCCcc
Q 031079 23 SITATVLSAS-LLVGLTTSLILFCSHFHQVEGDRNVGKMS 61 (166)
Q Consensus 23 ~~~~~~ll~s-l~~Gll~~aIL~vNN~RDie~Dr~aGKrT 61 (166)
++++...+.. +..-++-++.-..||+=|+|.|+...+||
T Consensus 36 ~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt 75 (296)
T PRK05951 36 SFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETT 75 (296)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccc
Confidence 5676655444 45556668889999999966665554443
No 87
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=77.93 E-value=42 Score=28.51 Aligned_cols=31 Identities=10% Similarity=0.033 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHhcC
Q 031079 28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG 58 (166)
Q Consensus 28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aG 58 (166)
.++..+..-+..++-...||+=|+|-|++.-
T Consensus 41 ~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~ 71 (284)
T PRK12888 41 LLLVTVAMVGARTFAMAANRIIDREIDARNP 71 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCC
Confidence 4456667777788999999999999998874
No 88
>PRK13591 ubiA prenyltransferase; Provisional
Probab=75.24 E-value=18 Score=31.64 Aligned_cols=27 Identities=15% Similarity=0.041 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhHhc
Q 031079 31 ASLLVGLTTSLILFCSHFHQVEGDRNV 57 (166)
Q Consensus 31 ~sl~~Gll~~aIL~vNN~RDie~Dr~a 57 (166)
..+..++.+.+.-..|++=|+|.|+-.
T Consensus 63 ~~~~~~L~~~s~~~iNd~~D~eiD~IN 89 (307)
T PRK13591 63 TCIAGGLIIYSVYTLDRALDSEEDAVN 89 (307)
T ss_pred HHHHHHHHHHHHHHHhhhccchhhhcc
Confidence 466678888999999999999999774
No 89
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=72.52 E-value=51 Score=26.84 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=47.9
Q ss_pred ceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHH
Q 031079 63 LVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFG 142 (166)
Q Consensus 63 aVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~g 142 (166)
+..++.+.-|..-..+++++++..+-+++....|...- -.-.-+|+....+--+.+. +.+...+.+..-.+.+|
T Consensus 63 l~p~~l~~lr~~~filvIA~~V~~ve~~l~~~~p~ly~-~LGiflpLI~tNCaVLG~a-----~~~~~~~~~~~~s~~~g 136 (190)
T TIGR01943 63 LDPLNLEFLRTIVFILVIAALVQFVEMVVRKTSPDLYR-ALGIFLPLITTNCAVLGVA-----LLNIQLDYNLLQSIVYA 136 (190)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH-HHhhhhhHHHHHHHHHHHH-----HHHHHccCCHHHHHHHH
Confidence 33356666665555666666665555555554554322 2224456665555444221 11111112222235666
Q ss_pred HHHHHHHHHHH--------HhccCCCCCc
Q 031079 143 AALVAGLITAR--------ILVTKHIPKL 163 (166)
Q Consensus 143 lLl~lglll~~--------~~~~~~~~~~ 163 (166)
+..++|+.+.- .++..++||-
T Consensus 137 lg~GlGf~lal~l~a~iRE~l~~~~vP~~ 165 (190)
T TIGR01943 137 VGAGLGFTLAMVIFAGIRERLDLSDVPKA 165 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCcc
Confidence 66666665442 3788889974
No 90
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=71.54 E-value=24 Score=30.53 Aligned_cols=34 Identities=12% Similarity=0.124 Sum_probs=24.4
Q ss_pred eehHHHHHHHHHHHHH-HHHHHHhcCCCCch--hhHh
Q 031079 23 SITATVLSASLLVGLT-TSLILFCSHFHQVE--GDRN 56 (166)
Q Consensus 23 ~~~~~~ll~sl~~Gll-~~aIL~vNN~RDie--~Dr~ 56 (166)
+++|...+..+..+++ -.++-..||+-|.+ .|++
T Consensus 44 ~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~ 80 (304)
T PRK07419 44 VFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKN 80 (304)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 6777776666544444 47788899999999 5764
No 91
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=71.23 E-value=33 Score=29.25 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=24.4
Q ss_pred eehHHHHHHHHHHHHH-HHHHHHhcCCCCchh--hH
Q 031079 23 SITATVLSASLLVGLT-TSLILFCSHFHQVEG--DR 55 (166)
Q Consensus 23 ~~~~~~ll~sl~~Gll-~~aIL~vNN~RDie~--Dr 55 (166)
++++..++..+...++ =.++-+.||+-|.+. |+
T Consensus 31 ~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~ 66 (285)
T TIGR02235 31 VFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDR 66 (285)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCc
Confidence 6777777666544444 478889999999988 76
No 92
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=70.44 E-value=71 Score=27.63 Aligned_cols=35 Identities=6% Similarity=-0.026 Sum_probs=25.1
Q ss_pred eehHHHHHHHHHHHH-HHHHHHHhcCCCCchhhHhc
Q 031079 23 SITATVLSASLLVGL-TTSLILFCSHFHQVEGDRNV 57 (166)
Q Consensus 23 ~~~~~~ll~sl~~Gl-l~~aIL~vNN~RDie~Dr~a 57 (166)
++++...++.+...+ +-++.-..||+-|.+.|+-.
T Consensus 35 ~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~ 70 (317)
T PRK13387 35 IFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDT 70 (317)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCc
Confidence 677766655554444 66888999999998876554
No 93
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=69.35 E-value=16 Score=31.99 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=50.6
Q ss_pred CCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHH-hcc-hhHHHHHHHHhhHHhHHHHHHHHHh-hcCCch
Q 031079 49 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL-SRA-LPLSCIFLCAMTSPIGKLVVSYVEE-NHKDKG 125 (166)
Q Consensus 49 RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~-~g~-~p~~~l~l~ll~lPla~~~~~~~~~-~~~~~~ 125 (166)
.|-+.|.++|.|.-+.|+|++--. ....+-......+....+ .+. .|++.. ++.. +.+....+.+ .-|+|+
T Consensus 247 QDK~dDvk~gvkSTALrfG~nTK~-wl~gf~a~~ia~La~aG~~s~q~~pyy~~-lg~~----~~~L~~~i~~vdiDnp~ 320 (353)
T KOG1381|consen 247 QDKRDDVKIGVKSTALRFGDNTKP-WLSGFGAAQIASLAAAGIASDQTWPYYAA-LGAV----AARLGSQIYKVDIDNPS 320 (353)
T ss_pred ccchhhhHhcchhhhhhcCCCCch-HHhhhhHHHHHHHHHhhhccCCCchHHHH-HHHH----HHHHHhheeeeecCChH
Confidence 589999999999999999975444 333333332222222222 222 233333 2222 2333333322 123444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031079 126 KIFMAKYYCVRFHALFGAALVAGLITARIL 155 (166)
Q Consensus 126 ~l~~~l~~t~~~~ll~glLl~lglll~~~~ 155 (166)
+-.+-... ..-.|+.+..|+.+++++
T Consensus 321 dC~k~f~s----N~ntGli~~~~i~~d~ll 346 (353)
T KOG1381|consen 321 DCWKKFKS----NSNTGLILFSGIVLDTLL 346 (353)
T ss_pred HHHHHHHh----cCcchHHHHHHHHHHHHH
Confidence 33322222 346778888888887764
No 94
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=69.10 E-value=80 Score=27.67 Aligned_cols=101 Identities=12% Similarity=0.024 Sum_probs=53.8
Q ss_pred cceeeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchh-H
Q 031079 19 NLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALP-L 97 (166)
Q Consensus 19 ~~~~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p-~ 97 (166)
+...++++++++....+-++.--=-++=-++-.|+=+++|-=-+|+.-|++..++.-..-.+.-..+.+.+...|... .
T Consensus 168 Avtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g~~g~~ 247 (304)
T COG0109 168 AVTGSISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGYL 247 (304)
T ss_pred eeeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 334456666666555555544222222223445666889999999999999888653222222222233333344332 2
Q ss_pred HHHHHHHhhHHhHHHHHHHHHh
Q 031079 98 SCIFLCAMTSPIGKLVVSYVEE 119 (166)
Q Consensus 98 ~~l~l~ll~lPla~~~~~~~~~ 119 (166)
+....+.+........++..++
T Consensus 248 Y~v~a~~l~~~~l~~a~~~~~~ 269 (304)
T COG0109 248 YLVVATLLGAWFLALAWKLYRK 269 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 2221344555666666666654
No 95
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=68.52 E-value=36 Score=29.12 Aligned_cols=39 Identities=5% Similarity=0.006 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHH-HHHHhcCCCCchhhHhcCCcccc
Q 031079 25 TATVLSASLLVGLTTS-LILFCSHFHQVEGDRNVGKMSPL 63 (166)
Q Consensus 25 ~~~~ll~sl~~Gll~~-aIL~vNN~RDie~Dr~aGKrTLa 63 (166)
+|..++..+.+-...+ ++--.|++=|.|.|+..-||.=+
T Consensus 32 ~~~~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~ 71 (282)
T PRK13105 32 DWLFVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV 71 (282)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC
Confidence 3444444544333332 22366999999999988776443
No 96
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=67.70 E-value=67 Score=26.25 Aligned_cols=92 Identities=12% Similarity=0.043 Sum_probs=46.1
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHH
Q 031079 66 LGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAAL 145 (166)
Q Consensus 66 LG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl 145 (166)
++.+.=|..-..+++++++..+-+++....|...- ..-.-+|+....+--+.+. +.+...+.+..-.+.+|+..
T Consensus 67 ~~l~~lr~~~fIlvIA~~V~~ve~~l~~~~p~Ly~-~LGiflpLI~tNCaVLG~a-----l~~~~~~~~~~~s~~~glg~ 140 (193)
T PRK05151 67 LDLIYLRTLAFILVIAVVVQFTEMVVRKTSPTLYR-LLGIFLPLITTNCAVLGVA-----LLNINLGHNFLQSALYGFGA 140 (193)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHhhhhhHHHHHHHHHHHH-----HHHHHccCCHHHHHHHHHHH
Confidence 55555555555556666655555555554444322 2224456666555544221 11111112222235666666
Q ss_pred HHHHHHHH--------HhccCCCCCc
Q 031079 146 VAGLITAR--------ILVTKHIPKL 163 (166)
Q Consensus 146 ~lglll~~--------~~~~~~~~~~ 163 (166)
++|+.+.- .++.+.+||-
T Consensus 141 GlGf~lal~lla~iRErl~~~~vP~~ 166 (193)
T PRK05151 141 AVGFSLVLVLFAAIRERLAVADVPAP 166 (193)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 66665542 3788889974
No 97
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=66.81 E-value=43 Score=28.09 Aligned_cols=31 Identities=16% Similarity=0.036 Sum_probs=21.4
Q ss_pred eehHH-HHHHHHHHHHHHHHHHHhcCCCCchh
Q 031079 23 SITAT-VLSASLLVGLTTSLILFCSHFHQVEG 53 (166)
Q Consensus 23 ~~~~~-~ll~sl~~Gll~~aIL~vNN~RDie~ 53 (166)
.+++. .++..+.+-+.-++....||+-|+|.
T Consensus 34 ~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~ 65 (293)
T PRK06080 34 SFHPLLALLALLAALLLQIATNLANDYGDYVK 65 (293)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 34544 34444566677788999999999953
No 98
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=62.34 E-value=1.2e+02 Score=27.49 Aligned_cols=40 Identities=5% Similarity=0.174 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc
Q 031079 124 KGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKL 163 (166)
Q Consensus 124 ~~~l~~~l~~t~~~~ll~glLl~lglll~~~~~~~~~~~~ 163 (166)
.+++.+.+.+|++.+-...+..+.+..+++.+....+|..
T Consensus 261 ~~~l~~~l~~t~~~t~~i~~ii~~a~~f~~~lt~~gvp~~ 300 (425)
T PRK15060 261 FSTLYHVLINAAKTTSVVMFLVASAQVSAWLITIAELPMM 300 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH
Confidence 4678888888988888888888888888888888777764
No 99
>COG5477 Predicted small integral membrane protein [Function unknown]
Probab=58.45 E-value=18 Score=26.08 Aligned_cols=50 Identities=22% Similarity=0.143 Sum_probs=41.2
Q ss_pred chhhHhcCC-cccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Q 031079 51 VEGDRNVGK-MSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCI 100 (166)
Q Consensus 51 ie~Dr~aGK-rTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l 100 (166)
.|.-|..|. |-=-.|+-..++-++|..++..+|+-+..+.+.|..-||.+
T Consensus 33 WE~arPggnpR~G~LrfeTTRGDRLFisLLgsAyIhLAWlGLvg~nlWwa~ 83 (97)
T COG5477 33 WEYARPGGNPRVGILRFETTRGDRLFISLLGSAYIHLAWLGLVGENLWWAL 83 (97)
T ss_pred HHHhCCCCCCceeeEEeeecccceehHHHHHHHHHHHHHHHhccccHHHHH
Confidence 456666665 55567888899999999999999999999999998877776
No 100
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=58.44 E-value=99 Score=27.53 Aligned_cols=38 Identities=16% Similarity=-0.239 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 031079 125 GKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPK 162 (166)
Q Consensus 125 ~~l~~~l~~t~~~~ll~glLl~lglll~~~~~~~~~~~ 162 (166)
++.....+.+++.......+...+-.++..++.-.+|+
T Consensus 244 ~~~~~~~~~~a~~~~~v~~iI~aA~vF~~~L~~~Gi~~ 281 (388)
T TIGR00771 244 KITEEFFNGMGNSFANVVGLIVAASVFAAGLKTIGAVD 281 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 34556566666666545555555555566666555553
No 101
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=56.52 E-value=82 Score=26.82 Aligned_cols=31 Identities=13% Similarity=0.056 Sum_probs=22.8
Q ss_pred eehHHHHHHHHHHH-HHHHHHHHhcCCCCchh
Q 031079 23 SITATVLSASLLVG-LTTSLILFCSHFHQVEG 53 (166)
Q Consensus 23 ~~~~~~ll~sl~~G-ll~~aIL~vNN~RDie~ 53 (166)
.++|...+..+... ++-+++-..||+-|.+.
T Consensus 24 ~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~ 55 (284)
T TIGR00751 24 AFVWLVALLALATAVLLQILSNYANDYGDGIK 55 (284)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 67887665555444 55588899999999944
No 102
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=51.80 E-value=4.3 Score=32.52 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=22.7
Q ss_pred HHHHhcCCCCchhhH----------hcCCcccceecC
Q 031079 41 LILFCSHFHQVEGDR----------NVGKMSPLVRLG 67 (166)
Q Consensus 41 aIL~vNN~RDie~Dr----------~aGKrTLaVrLG 67 (166)
+--..|.+||+.+|. +.||.|+|+..+
T Consensus 161 a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~ 197 (236)
T cd00867 161 AFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILA 197 (236)
T ss_pred HHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHH
Confidence 455789999998887 899999998766
No 103
>COG3389 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.74 E-value=1.2e+02 Score=25.93 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=33.4
Q ss_pred HHHhhHHhHHHHHHHHHhhcC----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhccCCC
Q 031079 102 LCAMTSPIGKLVVSYVEENHK----DKGKIFMAKYYCVRFHALFGAALVAGLITAR-------ILVTKHI 160 (166)
Q Consensus 102 l~ll~lPla~~~~~~~~~~~~----~~~~l~~~l~~t~~~~ll~glLl~lglll~~-------~~~~~~~ 160 (166)
+..+++++++...-.+..+.+ |-...--..+-++.+..-+|++=++.++... .++|||.
T Consensus 91 i~~~si~~aI~~~~lL~~~peWyVid~ag~~la~Giaai~GIsfgv~pavvlL~~lavYDaIsVYkT~HM 160 (277)
T COG3389 91 INIASIGLAIGLVYLLYKYPEWYVIDLAGFFLAVGIAAIFGISFGVLPAVVLLIALAVYDAISVYKTRHM 160 (277)
T ss_pred HHHHHHHHHHHHHHhhhhccceEEeehHHHHHHhhHHHhheeecchHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456677777777666644321 2222333345566666666666666665432 3788884
No 104
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=46.38 E-value=1.5e+02 Score=26.00 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=37.3
Q ss_pred eehHHHHHHHH-HHHHHHHHHHHhcCCCCchh--h----HhcCCcccceecCcccHHHHHHHHH
Q 031079 23 SITATVLSASL-LVGLTTSLILFCSHFHQVEG--D----RNVGKMSPLVRLGTERGSVVVKWAV 79 (166)
Q Consensus 23 ~~~~~~ll~sl-~~Gll~~aIL~vNN~RDie~--D----r~aGKrTLaVrLG~~~A~~ly~~ll 79 (166)
++++...++.+ .+.++-..+-..|||-|.+. | -+.+...+.++=+.+.+..+-..+.
T Consensus 40 ~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~ 103 (303)
T COG1575 40 SFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALF 103 (303)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHH
Confidence 46666555544 45566688899999999863 4 3566667777777776665544333
No 105
>PF13755 Sensor_TM1: Sensor N-terminal transmembrane domain
Probab=39.41 E-value=13 Score=26.23 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHh
Q 031079 33 LLVGLTTSLILFCSHFHQVEGDRN 56 (166)
Q Consensus 33 l~~Gll~~aIL~vNN~RDie~Dr~ 56 (166)
++..++++.+|+.|++||-=-|.+
T Consensus 24 ~aL~vLv~G~LyLn~~R~~Li~ar 47 (79)
T PF13755_consen 24 LALAVLVGGILYLNQYRDGLIDAR 47 (79)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 456788999999999999766654
No 106
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=38.98 E-value=2.9e+02 Score=24.72 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 031079 124 KGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPK 162 (166)
Q Consensus 124 ~~~l~~~l~~t~~~~ll~glLl~lglll~~~~~~~~~~~ 162 (166)
.+++.+.+.++++.......+++.+-.++..+....+|.
T Consensus 261 ~~~l~~~l~~~~~~~~~i~~iia~a~~~~~~l~~~g~~~ 299 (416)
T PF06808_consen 261 WKDLWRALVETARTTGMILFIIAAAGIFSWVLTLTGVPQ 299 (416)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccH
Confidence 456778888888888777777777777777766666664
No 107
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=37.38 E-value=83 Score=25.55 Aligned_cols=16 Identities=13% Similarity=0.009 Sum_probs=8.5
Q ss_pred HHhhH-HhHHHHHHHHH
Q 031079 103 CAMTS-PIGKLVVSYVE 118 (166)
Q Consensus 103 ~ll~l-Pla~~~~~~~~ 118 (166)
+++.+ |+.+.....++
T Consensus 60 GlLGliPI~lGi~~l~~ 76 (191)
T PF03596_consen 60 GLLGLIPIYLGIKALFS 76 (191)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 55444 66665554444
No 108
>PLN02922 prenyltransferase
Probab=36.86 E-value=2.7e+02 Score=24.05 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=22.7
Q ss_pred eehHHHHHHHHHHHHHH-HHHHHhcCCCCchh
Q 031079 23 SITATVLSASLLVGLTT-SLILFCSHFHQVEG 53 (166)
Q Consensus 23 ~~~~~~ll~sl~~Gll~-~aIL~vNN~RDie~ 53 (166)
+++|...++.+...++. .++-..||+-|.+.
T Consensus 47 ~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~ 78 (315)
T PLN02922 47 LFDARRYGTLLLSSVLVITWLNLSNDAYDADT 78 (315)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhHhcc
Confidence 67887766655444444 77888999999887
No 109
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=36.44 E-value=2.4e+02 Score=23.13 Aligned_cols=82 Identities=16% Similarity=0.158 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 031079 76 KWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR-- 153 (166)
Q Consensus 76 ~~ll~~ay~~~~~~v~~g~~p~~~l~l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~-- 153 (166)
..+++++++..+-+++....|...- ..-.-+|+....+-.+-+. +.+.....+..-...+|+..++|+.+.-
T Consensus 84 fIlvIA~~V~~ve~~l~a~~p~Ly~-~LGiflpLI~tNCaVLG~a-----l~~~~~~~~~~~s~~~glg~GlGftlal~l 157 (199)
T PRK12456 84 FIGVLAALVQILEMVLERFLPSLHH-TLGAFLPLLTIHCAIFGAT-----IFMVQREYTFTESFVYGTGCGLGWMLAIIS 157 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHhHHHHHHHHHHHH-----HHHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444444322 2234456666555544221 1111111222234566777777766543
Q ss_pred ------HhccCCCCCc
Q 031079 154 ------ILVTKHIPKL 163 (166)
Q Consensus 154 ------~~~~~~~~~~ 163 (166)
.++.+.+||-
T Consensus 158 ~a~iRE~l~~~~iP~~ 173 (199)
T PRK12456 158 MAGLREKMKYSNIPKG 173 (199)
T ss_pred HHHHHHHHccCCCCcc
Confidence 2677788864
No 110
>PF05571 DUF766: Protein of unknown function (DUF766); InterPro: IPR008485 This family consists of several eukaryotic proteins of unknown function.
Probab=36.20 E-value=1e+02 Score=26.87 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=37.3
Q ss_pred eeeehHHHHHHHHHHHHHHHHHHHhcCC----CCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchh
Q 031079 21 CLSITATVLSASLLVGLTTSLILFCSHF----HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALP 96 (166)
Q Consensus 21 ~~~~~~~~ll~sl~~Gll~~aIL~vNN~----RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p 96 (166)
|++++.-++..|+. +.++-++-+. +|+=.+.-..+|.+.+ +..-+++.+|..+.+.-.....-
T Consensus 205 YYsFPYi~li~Sl~----s~a~h~a~~~~q~~~~l~~~~~~~~~~~~i---------l~~hwll~a~giisit~~~~~~~ 271 (296)
T PF05571_consen 205 YYSFPYIVLILSLI----SNAVHFALKIDQSMKALIVSSVTDPRNLVI---------LFGHWLLHAYGIISITRLSDPTY 271 (296)
T ss_pred eecchHHHHHHHHH----HHHHHHHhccCcCHHHHHHHhccccceehh---------HHHHHHHHHHHHHHHhcccccch
Confidence 66777777666653 3344343322 2222222223444444 44455667777665433322222
Q ss_pred HHHHHHHHhhHHhHH
Q 031079 97 LSCIFLCAMTSPIGK 111 (166)
Q Consensus 97 ~~~l~l~ll~lPla~ 111 (166)
-+.+ +.++.+|...
T Consensus 272 ~~~~-L~lvP~P~lF 285 (296)
T PF05571_consen 272 HWSL-LALVPLPALF 285 (296)
T ss_pred HhHH-HHHhhhHHHH
Confidence 2344 6667767544
No 111
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=35.44 E-value=14 Score=30.48 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=21.7
Q ss_pred HHHHHhcCCCCchhhHhcCCccccee
Q 031079 40 SLILFCSHFHQVEGDRNVGKMSPLVR 65 (166)
Q Consensus 40 ~aIL~vNN~RDie~Dr~aGKrTLaVr 65 (166)
.+.=++|-+||+.+|.+.|+-.+|.-
T Consensus 153 ~AlqltnilRdv~eD~~~gR~YlP~d 178 (265)
T cd00683 153 LALQLTNILRDVGEDARRGRIYLPRE 178 (265)
T ss_pred HHHHHHHHHHHHHHHHccCCCcCCHH
Confidence 45667888999999999999988853
No 112
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=34.13 E-value=19 Score=30.05 Aligned_cols=28 Identities=11% Similarity=0.129 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCCCchhhHhcCCccccee
Q 031079 38 TTSLILFCSHFHQVEGDRNVGKMSPLVR 65 (166)
Q Consensus 38 l~~aIL~vNN~RDie~Dr~aGKrTLaVr 65 (166)
+-.+.-++|-+||+.+|.+.|+--+|.-
T Consensus 143 lG~AlQltniLRDl~eD~~~gR~YLP~~ 170 (266)
T TIGR03464 143 ICTALQLINFWQDVGVDYRKGRVYLPRD 170 (266)
T ss_pred HHHHHHHHHHHHhhHHHHhcCCccCCHH
Confidence 3356677889999999999999988743
No 113
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=33.91 E-value=1.8e+02 Score=21.99 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=19.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 031079 67 GTERGSVVVKWAVMILYSLLFAIGLSRALPL 97 (166)
Q Consensus 67 G~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~ 97 (166)
..+....++..+..++.+..+.+...|..|.
T Consensus 8 s~~g~~~~~~~~~~~~~~~a~~f~~~GaW~V 38 (140)
T PF10003_consen 8 SPRGFLIFIAILAAVSLIIAIAFLLMGAWPV 38 (140)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 4455566666666666666666666665443
No 114
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=33.38 E-value=10 Score=28.95 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCCchhhHhc--CCcccceecCcc
Q 031079 37 LTTSLILFCSHFHQVEGDRNV--GKMSPLVRLGTE 69 (166)
Q Consensus 37 ll~~aIL~vNN~RDie~Dr~a--GKrTLaVrLG~~ 69 (166)
.+..+.-+.|+++|++.|.+. ||.|+|..+-++
T Consensus 151 ~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~ 185 (243)
T cd00385 151 ALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALE 185 (243)
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHH
Confidence 344567789999999999998 788888765444
No 115
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=30.62 E-value=22 Score=29.53 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=21.9
Q ss_pred HHHHHHhcCCCCchhhHhcCCcccce
Q 031079 39 TSLILFCSHFHQVEGDRNVGKMSPLV 64 (166)
Q Consensus 39 ~~aIL~vNN~RDie~Dr~aGKrTLaV 64 (166)
-.+.=++|-+||+.+|.+.||-.+|-
T Consensus 143 G~AlqltnilRdv~eD~~~gR~ylP~ 168 (266)
T TIGR03465 143 GRALQLTNILRDVGEDARRGRIYLPA 168 (266)
T ss_pred HHHHHHHHHHHHhHHHHhCCCeecCH
Confidence 45566788899999999999988885
No 116
>PLN02878 homogentisate phytyltransferase
Probab=30.51 E-value=2.4e+02 Score=24.35 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=20.0
Q ss_pred HHhcCCCCchhhHhcCCcccceecCc
Q 031079 43 LFCSHFHQVEGDRNVGKMSPLVRLGT 68 (166)
Q Consensus 43 L~vNN~RDie~Dr~aGKrTLaVrLG~ 68 (166)
-=.|++-|+|-|| .+|-.+|+-=|+
T Consensus 40 vglNd~~D~EIDk-INkP~rPIpSG~ 64 (280)
T PLN02878 40 VGLNQLYDIEIDK-VNKPYLPLASGE 64 (280)
T ss_pred echhhhhhhcccc-cCCCCCCCCCCC
Confidence 3469999999995 778888886675
No 117
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=30.35 E-value=3.8e+02 Score=23.53 Aligned_cols=37 Identities=19% Similarity=0.031 Sum_probs=24.3
Q ss_pred eeehHHHHHHHHH-HHHHHHHHHHhcCCCCchhhHhcC
Q 031079 22 LSITATVLSASLL-VGLTTSLILFCSHFHQVEGDRNVG 58 (166)
Q Consensus 22 ~~~~~~~ll~sl~-~Gll~~aIL~vNN~RDie~Dr~aG 58 (166)
.+.++..++..+. ..+-+++---.||+.|+|=|++=.
T Consensus 47 ~~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~ 84 (304)
T COG0109 47 GSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALME 84 (304)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhh
Confidence 4566665554443 344446666789999999997643
No 118
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.13 E-value=26 Score=25.81 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.4
Q ss_pred CchhhHhcCCcccceec
Q 031079 50 QVEGDRNVGKMSPLVRL 66 (166)
Q Consensus 50 Die~Dr~aGKrTLaVrL 66 (166)
-.|.|..+|+||+.+|=
T Consensus 11 rfe~dilagrKTITIRD 27 (106)
T COG3097 11 RFEADILAGRKTITIRD 27 (106)
T ss_pred hccHHHhCCCceEEEec
Confidence 46899999999999873
No 119
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=30.06 E-value=65 Score=22.55 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 031079 25 TATVLSASLLVGLTTSLIL 43 (166)
Q Consensus 25 ~~~~ll~sl~~Gll~~aIL 43 (166)
||.++.+++.+|++...++
T Consensus 73 P~~svgiAagvG~llG~Ll 91 (94)
T PF05957_consen 73 PWQSVGIAAGVGFLLGLLL 91 (94)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6888999999999998876
No 120
>COG5488 Integral membrane protein [Function unknown]
Probab=24.44 E-value=1.7e+02 Score=23.27 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=30.6
Q ss_pred ecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH--HhhHHhHHH
Q 031079 65 RLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLC--AMTSPIGKL 112 (166)
Q Consensus 65 rLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~--ll~lPla~~ 112 (166)
-+|++....++..+.+..++..+.+...|..|.... .+ .+++-++.+
T Consensus 25 Slg~rgf~~lm~~~~~~~~~v~~ff~~igAwpV~~F-fGLDvlal~~Afr 73 (164)
T COG5488 25 SLGPRGFGVLMLALGILSLVVAIFFLVIGAWPVLPF-FGLDVLALYLAFR 73 (164)
T ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHhccCceecc-chHHHHHHHHHHH
Confidence 478888888888888877777777777776665443 33 244444444
No 121
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=24.07 E-value=4.5e+02 Score=22.34 Aligned_cols=91 Identities=11% Similarity=0.080 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHH
Q 031079 67 GTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALV 146 (166)
Q Consensus 67 G~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~ 146 (166)
+.+.=|..-..+++.+++.++-+++....|...- ..-.-+|+..-.+-.+-+. +.+...+.+..-.+.+|+..+
T Consensus 87 ~l~~Lr~ivfIlvIA~~Vq~vem~L~a~~p~Ly~-aLGifLPLIttNCaVLG~a-----l~~~~~~~~~~~S~~~Glg~G 160 (244)
T PRK01061 87 NLSFLELIIFIVVIAAFTQILELLLEKVSRNLYL-SLGIFLPLIAVNCAILGGV-----LFGITRNYPFIPMMIFSLGAG 160 (244)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHhcchhHHHHHHHHHHHH-----HHHHHccCCHHHHHHHHHHHH
Confidence 4444444444555666665555555554544322 2234556666555544221 112122222223456777777
Q ss_pred HHHHHHH--------HhccCCCCCc
Q 031079 147 AGLITAR--------ILVTKHIPKL 163 (166)
Q Consensus 147 lglll~~--------~~~~~~~~~~ 163 (166)
+|+.+.. .++...+|+-
T Consensus 161 lGftLALvl~a~iRErL~~~~iP~~ 185 (244)
T PRK01061 161 CGWWLAIVLFATIREKLAYSDVPKN 185 (244)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcc
Confidence 7776543 2666777763
No 122
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=23.92 E-value=99 Score=26.74 Aligned_cols=38 Identities=21% Similarity=0.126 Sum_probs=27.0
Q ss_pred CCCCCCCCcccccceeeehHHHHHHHHHHHHHHHHHHHhcC
Q 031079 7 CHNIDSDGFDRENLCLSITATVLSASLLVGLTTSLILFCSH 47 (166)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ll~sl~~Gll~~aIL~vNN 47 (166)
+|-|+|..+...+ +++|..+++-.++|+...+-+..+.
T Consensus 58 ~~~~~~~~~~r~g---p~~w~~~~~t~Alg~~~~g~~~Y~~ 95 (280)
T KOG2792|consen 58 GGPIESGKPGRPG---PFSWRSLLATFALGLGLGGALAYLK 95 (280)
T ss_pred CCccccCCCCCCC---cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777776665 8899988887777776665555554
No 123
>PRK04980 hypothetical protein; Provisional
Probab=23.60 E-value=47 Score=24.46 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=17.3
Q ss_pred CchhhHhcCCcccceecCcc
Q 031079 50 QVEGDRNVGKMSPLVRLGTE 69 (166)
Q Consensus 50 Die~Dr~aGKrTLaVrLG~~ 69 (166)
-++.|..+||||.-+|-|.+
T Consensus 10 r~~~~ILsGkKTiTiRd~se 29 (102)
T PRK04980 10 RFEADILAGRKTITIRDESE 29 (102)
T ss_pred HHHHHHHcCCceEEeeCCcc
Confidence 46889999999999999864
No 124
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=23.32 E-value=2.7e+02 Score=22.04 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=6.8
Q ss_pred CCchhhHhcCCcc
Q 031079 49 HQVEGDRNVGKMS 61 (166)
Q Consensus 49 RDie~Dr~aGKrT 61 (166)
.+-++|++.+||.
T Consensus 27 ~~~~~~~~~~~~~ 39 (211)
T PF02683_consen 27 GSGASSRRKGKRV 39 (211)
T ss_pred CCCcccchhhhHH
Confidence 3344566666554
No 125
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=23.31 E-value=24 Score=25.61 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=8.4
Q ss_pred cCCCCchhhH
Q 031079 46 SHFHQVEGDR 55 (166)
Q Consensus 46 NN~RDie~Dr 55 (166)
=||||.|+|.
T Consensus 48 LNYrD~EGDL 57 (92)
T cd06399 48 LNYRDAEGDL 57 (92)
T ss_pred eeeecCCCCE
Confidence 4899999994
No 126
>MTH00155 COX3 cytochrome c oxidase subunit III; Provisional
Probab=23.28 E-value=4.5e+02 Score=22.03 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHh-cCCcccceecCcccHHHHHHHHH
Q 031079 33 LLVGLTTSLILFCSHFHQVEGDRN-VGKMSPLVRLGTERGSVVVKWAV 79 (166)
Q Consensus 33 l~~Gll~~aIL~vNN~RDie~Dr~-aGKrTLaVrLG~~~A~~ly~~ll 79 (166)
+.+|+.........=.||+-.|.. .|++|..|+-|.+.+-.++...=
T Consensus 41 ~~~~~~~~~~~~~~W~~dv~~E~~~~G~ht~~v~~~~~~G~~lFI~SE 88 (255)
T MTH00155 41 LILGLIITLLTMFQWWRDVIREGTFQGLHTKKVTKGLRWGMILFIVSE 88 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCChhhccCchHhHHHHHHHH
Confidence 335555566666677999988886 99999999999999998886443
No 127
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=23.05 E-value=25 Score=22.29 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=9.0
Q ss_pred HhcCCCCchhhH
Q 031079 44 FCSHFHQVEGDR 55 (166)
Q Consensus 44 ~vNN~RDie~Dr 55 (166)
-+||+||..+-.
T Consensus 20 QaN~iRDvqGGt 31 (46)
T PF02402_consen 20 QANYIRDVQGGT 31 (46)
T ss_pred hhcceecCCCce
Confidence 379999987543
No 128
>PRK12768 CysZ-like protein; Reviewed
Probab=22.96 E-value=2.7e+02 Score=23.34 Aligned_cols=39 Identities=8% Similarity=-0.013 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHH
Q 031079 34 LVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGS 72 (166)
Q Consensus 34 ~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~ 72 (166)
..+++.++=|+..+|.|+..|+..+|+----.+.+++.+
T Consensus 153 vl~~l~~awLl~~ey~d~a~~r~~~~~e~r~~l~~~r~~ 191 (240)
T PRK12768 153 IAFFVINGYLLGREFFEFAAMRFRSEAEAKAFRRKHATT 191 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccH
Confidence 456677788899999999999976655544445555543
No 129
>PRK09395 actP acetate permease; Provisional
Probab=22.74 E-value=6.1e+02 Score=23.38 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccc----eecCcccHHHH
Q 031079 28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPL----VRLGTERGSVV 74 (166)
Q Consensus 28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLa----VrLG~~~A~~l 74 (166)
....+.++|......++..-+| +.|+.|.+ -|.|.+..|.+
T Consensus 106 ~~~~~~~~g~~~~~~~~~~~~r------~~g~~T~~d~l~~Rygs~~~r~l 150 (551)
T PRK09395 106 IYSIGFLVGWPIILFLIAERLR------NLGKYTFADVASYRLKQGPIRTL 150 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh------hCCCccHHHHHHHHcCCchHHHH
Confidence 4456667777777777776554 66889988 68887666655
No 130
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=22.13 E-value=34 Score=28.03 Aligned_cols=28 Identities=7% Similarity=0.095 Sum_probs=18.7
Q ss_pred HHHHHHhcCCCCchhh-HhcCCcccceec
Q 031079 39 TSLILFCSHFHQVEGD-RNVGKMSPLVRL 66 (166)
Q Consensus 39 ~~aIL~vNN~RDie~D-r~aGKrTLaVrL 66 (166)
..+.=++|-+||+..| .+.||.-+|--.
T Consensus 151 G~alql~nilRd~~~D~~~~gR~ylP~d~ 179 (267)
T PF00494_consen 151 GRALQLTNILRDIPEDALRRGRIYLPLDD 179 (267)
T ss_dssp HHHHHHHHHHHTHHHH-HHTT---S-HHH
T ss_pred HHHHHHHHHHHHhHHHHHhcccccCCchh
Confidence 3455567888999999 899999988654
No 131
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=21.94 E-value=4.6e+02 Score=21.65 Aligned_cols=71 Identities=15% Similarity=0.065 Sum_probs=32.5
Q ss_pred HhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhhH-HhHHHHHHHHHhhcCCchHHHHHHH
Q 031079 55 RNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTS-PIGKLVVSYVEENHKDKGKIFMAKY 132 (166)
Q Consensus 55 r~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~ll~l-Pla~~~~~~~~~~~~~~~~l~~~l~ 132 (166)
++..|+++-+-.|.- ...+.+--+++.........|--.. .+++.+ |+.+.....+....|+.++.++.+.
T Consensus 30 ~~~~k~~~~I~~GQy------LGs~~lilaSL~~a~v~~fvp~e~I-~glLGLIPi~LGik~l~~~d~d~e~~~~e~L~ 101 (205)
T COG4300 30 RKSRKDILHIYLGQY------LGSVILILASLLFAFVLNFVPEEWI-LGLLGLIPIYLGIKVLILGDDDGEEEAKEELA 101 (205)
T ss_pred hcccCcEEEEeHHHH------HhHHHHHHHHHHHHHHHhhCcHHHH-HHHHhHHHHHHhhHHhhcccCcCchhhhHHHH
Confidence 334778888888853 2222222222222222222333222 345544 6666655555443333345555554
No 132
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=21.75 E-value=4.1e+02 Score=21.04 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=12.3
Q ss_pred CchhhHhcCCcccceecCc
Q 031079 50 QVEGDRNVGKMSPLVRLGT 68 (166)
Q Consensus 50 Die~Dr~aGKrTLaVrLG~ 68 (166)
|.-+|.+++-++.+++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (192)
T TIGR00916 7 KIFADFAANIGKPAIVLDN 25 (192)
T ss_pred HHHHHhhccCCceEEEeCC
Confidence 3445677777777776665
No 133
>PRK10581 geranyltranstransferase; Provisional
Probab=21.63 E-value=31 Score=29.62 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=17.1
Q ss_pred hhHhcCCcccceecCcccHHH
Q 031079 53 GDRNVGKMSPLVRLGTERGSV 73 (166)
Q Consensus 53 ~Dr~aGKrTLaVrLG~~~A~~ 73 (166)
+|.+.||.|+|+..|.+.|+.
T Consensus 241 ~Dl~~gk~T~p~l~~~e~a~~ 261 (299)
T PRK10581 241 ADQQLGKSTYPALLGLEQARK 261 (299)
T ss_pred hhhhcCCCCHHHHHHHHHHHH
Confidence 567789999999998877664
No 134
>PRK11376 hlyE hemolysin E; Provisional
Probab=21.35 E-value=1.8e+02 Score=24.87 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=37.7
Q ss_pred ccccceeeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccc
Q 031079 16 DRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPL 63 (166)
Q Consensus 16 ~~~~~~~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLa 63 (166)
-+|+.-+.++.+-+.++..-+.-.-.|+-||++ .++.||+|+-
T Consensus 256 etettrf~vdyddlml~~l~~~a~k~i~~cney-----q~rhgkktl~ 298 (303)
T PRK11376 256 ETETTRFYVDYDDLMLSLLKEAAKKMINTCNEY-----QKRHGKKTLF 298 (303)
T ss_pred cceeeeEEeehHHHHHHHHHHHHHHHHHHHHHH-----HHhhCcceee
Confidence 478888999999999999999999999999965 5778999973
No 135
>PLN02632 phytoene synthase
Probab=21.29 E-value=35 Score=29.70 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=21.8
Q ss_pred HHHHHHhcCCCCchhhHhcCCcccce
Q 031079 39 TSLILFCSHFHQVEGDRNVGKMSPLV 64 (166)
Q Consensus 39 ~~aIL~vNN~RDie~Dr~aGKrTLaV 64 (166)
-.+.-++|-+||+.+|.+.|+--||-
T Consensus 204 G~AlQltNILRDv~eD~~~GRvYLP~ 229 (334)
T PLN02632 204 GIANQLTNILRDVGEDARRGRVYLPQ 229 (334)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeCCH
Confidence 44666788889999999999988874
No 136
>PF09933 DUF2165: Predicted small integral membrane protein (DUF2165); InterPro: IPR018681 This family of various hypothetical prokaryotic proteins has no known function.
Probab=20.24 E-value=4.4e+02 Score=20.81 Aligned_cols=34 Identities=6% Similarity=0.042 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhHhcCCccccee
Q 031079 31 ASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVR 65 (166)
Q Consensus 31 ~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVr 65 (166)
..+.+++..+-+- .||+-|+++..+-=++++..-
T Consensus 10 l~~~~Al~~~Lva-~~NitDy~sN~~fV~hVlsMd 43 (160)
T PF09933_consen 10 LVAAIALFATLVA-FNNITDYGSNFQFVRHVLSMD 43 (160)
T ss_pred HHHHHHHHHHHHH-HhcccCcHHHHHHHHHHHHHH
Confidence 3444555555444 799999999887766666543
Done!