Query 031079
Match_columns 166
No_of_seqs 126 out of 581
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 14:02:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 30.3 12 0.00039 31.0 0.2 36 44-79 214-260 (297)
2 3lom_A Geranyltranstransferase 29.8 11 0.00038 31.4 -0.0 28 52-79 247-274 (313)
3 3lsn_A Geranyltranstransferase 29.6 10 0.00036 31.4 -0.2 27 53-79 241-267 (304)
4 3ts7_A Geranyltranstransferase 29.0 11 0.00039 31.6 -0.1 23 52-74 246-268 (324)
5 4hd1_A Squalene synthase HPNC; 28.6 15 0.00053 29.9 0.7 25 40-64 163-187 (294)
6 3p8l_A Geranyltranstransferase 28.5 11 0.00038 31.2 -0.2 26 52-77 243-268 (302)
7 4f62_A Geranyltranstransferase 27.8 11 0.00037 31.6 -0.4 25 52-76 239-263 (317)
8 3p8r_A Geranyltranstransferase 27.2 11 0.00037 31.3 -0.5 24 52-75 246-269 (302)
9 3uca_A Geranyltranstransferase 26.6 12 0.00042 31.4 -0.3 25 52-76 268-292 (324)
10 3acx_A Dehydrosqualene synthas 25.5 19 0.00066 29.1 0.7 25 40-64 168-192 (293)
11 1rqj_A Geranyltranstransferase 24.8 18 0.0006 29.7 0.3 22 53-74 241-262 (299)
12 3pde_A Farnesyl-diphosphate sy 24.7 32 0.0011 28.5 2.0 32 52-83 242-273 (309)
13 2h8o_A Geranyltranstransferase 23.6 16 0.00056 30.7 -0.1 22 53-74 280-301 (335)
14 1rtr_A Geranyltranstransferase 20.4 17 0.00057 30.0 -0.7 23 53-75 236-258 (301)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=30.30 E-value=12 Score=31.03 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=20.8
Q ss_pred HhcCCCCchh-----------hHhcCCcccceecCcccHHHHHHHHH
Q 031079 44 FCSHFHQVEG-----------DRNVGKMSPLVRLGTERGSVVVKWAV 79 (166)
Q Consensus 44 ~vNN~RDie~-----------Dr~aGKrTLaVrLG~~~A~~ly~~ll 79 (166)
..+++-|+.+ |.+.||.|+|+.+|.++|+..-.-+.
T Consensus 214 I~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~ 260 (297)
T 3m0g_A 214 IADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLV 260 (297)
T ss_dssp HHTTCC---------------------CCHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 4678888754 67789999999999999987654443
No 2
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=29.80 E-value=11 Score=31.40 Aligned_cols=28 Identities=7% Similarity=-0.044 Sum_probs=17.0
Q ss_pred hhhHhcCCcccceecCcccHHHHHHHHH
Q 031079 52 EGDRNVGKMSPLVRLGTERGSVVVKWAV 79 (166)
Q Consensus 52 e~Dr~aGKrTLaVrLG~~~A~~ly~~ll 79 (166)
-+|.+.||.|+|+.+|.+.|+..-.-..
T Consensus 247 g~Dl~~gK~T~p~l~~l~~a~~~a~~~~ 274 (313)
T 3lom_A 247 SSDQANQKTTFATLFNKQQLEEEIAVHY 274 (313)
T ss_dssp -------CCCHHHHSCHHHHHHHHHHHH
T ss_pred cchhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999986654443
No 3
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=29.61 E-value=10 Score=31.40 Aligned_cols=27 Identities=15% Similarity=-0.093 Sum_probs=16.0
Q ss_pred hhHhcCCcccceecCcccHHHHHHHHH
Q 031079 53 GDRNVGKMSPLVRLGTERGSVVVKWAV 79 (166)
Q Consensus 53 ~Dr~aGKrTLaVrLG~~~A~~ly~~ll 79 (166)
+|.+.||.|+|+.+|.+.|+..-.-..
T Consensus 241 ~Dl~egK~T~p~l~~l~~a~~~a~~~~ 267 (304)
T 3lsn_A 241 ADIARDKPTYPALLGLAAAKEYALELR 267 (304)
T ss_dssp -------CCHHHHHCHHHHHHHHHHHH
T ss_pred cHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999986654433
No 4
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=29.00 E-value=11 Score=31.56 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=13.5
Q ss_pred hhhHhcCCcccceecCcccHHHH
Q 031079 52 EGDRNVGKMSPLVRLGTERGSVV 74 (166)
Q Consensus 52 e~Dr~aGKrTLaVrLG~~~A~~l 74 (166)
-+|.+.||.|+|+.+|.+.|+..
T Consensus 246 g~Dl~egK~T~p~l~gle~a~~~ 268 (324)
T 3ts7_A 246 GKDRDHNKPNYPALLGLSGAKEK 268 (324)
T ss_dssp -------CCCHHHHHCHHHHHHH
T ss_pred cchhhcCCccHHHHHHHHHHHHH
Confidence 35788899999999998877644
No 5
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=28.57 E-value=15 Score=29.85 Aligned_cols=25 Identities=12% Similarity=0.339 Sum_probs=21.9
Q ss_pred HHHHHhcCCCCchhhHhcCCcccce
Q 031079 40 SLILFCSHFHQVEGDRNVGKMSPLV 64 (166)
Q Consensus 40 ~aIL~vNN~RDie~Dr~aGKrTLaV 64 (166)
.+.=++|-+||+.+|.+.||.-+|.
T Consensus 163 ~AlQltNilRDv~eD~~~gR~YlP~ 187 (294)
T 4hd1_A 163 TALQVANHMQDIDRDLALGRIYVPR 187 (294)
T ss_dssp HHHHHHHHHHTHHHHHHTTCBCSCH
T ss_pred HHHHHHHHHHhchhhhccCceeCCH
Confidence 4667889999999999999999885
No 6
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=28.47 E-value=11 Score=31.21 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=15.2
Q ss_pred hhhHhcCCcccceecCcccHHHHHHH
Q 031079 52 EGDRNVGKMSPLVRLGTERGSVVVKW 77 (166)
Q Consensus 52 e~Dr~aGKrTLaVrLG~~~A~~ly~~ 77 (166)
-+|.+.||.|+|+..|.++|+..-.-
T Consensus 243 g~Dl~egK~T~p~l~~l~~a~~~~~~ 268 (302)
T 3p8l_A 243 GRDEALNKSTYPALLGIAGAKDALTH 268 (302)
T ss_dssp --------CCHHHHHCHHHHHHHHHH
T ss_pred hhHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 46888899999999999999866543
No 7
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=27.85 E-value=11 Score=31.58 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=16.1
Q ss_pred hhhHhcCCcccceecCcccHHHHHH
Q 031079 52 EGDRNVGKMSPLVRLGTERGSVVVK 76 (166)
Q Consensus 52 e~Dr~aGKrTLaVrLG~~~A~~ly~ 76 (166)
-+|.+.||.|+|+.+|.+.|+..-.
T Consensus 239 g~Dl~egK~T~p~l~gle~a~~~a~ 263 (317)
T 4f62_A 239 FSDAEANKATYPKLLGLDGAKALVV 263 (317)
T ss_dssp ------CCCCHHHHHHHHHHHHHHH
T ss_pred chHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3577889999999999988876543
No 8
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=27.16 E-value=11 Score=31.26 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=13.9
Q ss_pred hhhHhcCCcccceecCcccHHHHH
Q 031079 52 EGDRNVGKMSPLVRLGTERGSVVV 75 (166)
Q Consensus 52 e~Dr~aGKrTLaVrLG~~~A~~ly 75 (166)
-+|.+.||.|+|+..|.+.|+..-
T Consensus 246 g~Dl~egK~T~p~l~~l~~a~~~a 269 (302)
T 3p8r_A 246 GSDQELNKSTYPALLGLEGAQQKA 269 (302)
T ss_dssp -------CCCHHHHHHHHHHHHHH
T ss_pred chHHhcCCchHHHHHHHHHHHHHH
Confidence 457788999999999888777543
No 9
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=26.59 E-value=12 Score=31.35 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=13.2
Q ss_pred hhhHhcCCcccceecCcccHHHHHH
Q 031079 52 EGDRNVGKMSPLVRLGTERGSVVVK 76 (166)
Q Consensus 52 e~Dr~aGKrTLaVrLG~~~A~~ly~ 76 (166)
-+|.+.||.|+|+..|.++|+..-.
T Consensus 268 g~Dl~egK~T~p~l~al~~a~~~a~ 292 (324)
T 3uca_A 268 HKDQESNKNNYITIFGLEECKKKCV 292 (324)
T ss_dssp ---------CHHHHHCHHHHHHHHH
T ss_pred chHhhcCCccHHHHHHHHHHHHHHH
Confidence 4688889999999999988876543
No 10
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=25.52 E-value=19 Score=29.12 Aligned_cols=25 Identities=8% Similarity=-0.007 Sum_probs=20.9
Q ss_pred HHHHHhcCCCCchhhHhcCCcccce
Q 031079 40 SLILFCSHFHQVEGDRNVGKMSPLV 64 (166)
Q Consensus 40 ~aIL~vNN~RDie~Dr~aGKrTLaV 64 (166)
.+.=++|-+||+.+|.+.||.-+|.
T Consensus 168 ~AlQltNilRDv~eD~~~gR~YLP~ 192 (293)
T 3acx_A 168 ESLQLINILRDVGEDFENERIYFSK 192 (293)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCSCH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEeCH
Confidence 3455677789999999999999987
No 11
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=24.76 E-value=18 Score=29.73 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=17.9
Q ss_pred hhHhcCCcccceecCcccHHHH
Q 031079 53 GDRNVGKMSPLVRLGTERGSVV 74 (166)
Q Consensus 53 ~Dr~aGKrTLaVrLG~~~A~~l 74 (166)
+|.+.||.|+|+.+|.+.++..
T Consensus 241 ~Dl~~gK~T~p~l~~l~~a~~~ 262 (299)
T 1rqj_A 241 ADQQLGKSTYPALLGLEQARKK 262 (299)
T ss_dssp HHHHHTCCCHHHHHCHHHHHHH
T ss_pred hHHHcCCCcHHHHHHHHHHHHH
Confidence 6778899999999998776543
No 12
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=24.71 E-value=32 Score=28.53 Aligned_cols=32 Identities=13% Similarity=-0.033 Sum_probs=23.0
Q ss_pred hhhHhcCCcccceecCcccHHHHHHHHHHHHH
Q 031079 52 EGDRNVGKMSPLVRLGTERGSVVVKWAVMILY 83 (166)
Q Consensus 52 e~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay 83 (166)
-+|.+.||.|+|+..|.++|+..-.-++--+.
T Consensus 242 g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~ 273 (309)
T 3pde_A 242 QKDADEAKNTYPGKLGLIGANQALIDTIHSGQ 273 (309)
T ss_dssp ---CTTTSSSHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCccHHHHHHHHHhHHHHHHHHHHHH
Confidence 36888999999999999999876655544443
No 13
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=23.61 E-value=16 Score=30.66 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=13.1
Q ss_pred hhHhcCCcccceecCcccHHHH
Q 031079 53 GDRNVGKMSPLVRLGTERGSVV 74 (166)
Q Consensus 53 ~Dr~aGKrTLaVrLG~~~A~~l 74 (166)
+|.+.||.|+|+.+|.+.++..
T Consensus 280 ~Dl~egK~T~p~l~~le~a~~~ 301 (335)
T 2h8o_A 280 KDAARGKGTLVALRGEAWAREK 301 (335)
T ss_dssp ------CCCHHHHHCHHHHHHH
T ss_pred hHHhcCCccHHHHHHHHHHHHH
Confidence 5778899999999997766644
No 14
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=20.35 E-value=17 Score=29.98 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=12.4
Q ss_pred hhHhcCCcccceecCcccHHHHH
Q 031079 53 GDRNVGKMSPLVRLGTERGSVVV 75 (166)
Q Consensus 53 ~Dr~aGKrTLaVrLG~~~A~~ly 75 (166)
+|.+.||.|+|+.+|.+.++..-
T Consensus 236 ~Dl~~gK~T~p~l~al~~a~~~a 258 (301)
T 1rtr_A 236 SDLENNKSTYVSLLGKDGAEDKL 258 (301)
T ss_dssp -------CCHHHHHHHHHHHHHH
T ss_pred hHHHcCCCcHHHHHHHHHHHHHH
Confidence 56777999999999877766443
Done!