Query 031079
Match_columns 166
No_of_seqs 126 out of 581
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 14:02:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031079.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031079hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1te7a_ b.122.1.7 (A:) Hypothe 40.9 4.7 0.00035 27.0 1.3 15 51-65 12-26 (103)
2 d1ezfa_ a.128.1.2 (A:) Squalen 29.3 6.4 0.00047 30.8 0.5 24 41-64 173-196 (333)
3 d1rtra_ a.128.1.1 (A:) Farnesy 25.7 5 0.00036 30.7 -0.8 24 50-73 232-255 (290)
4 d1rqja_ a.128.1.1 (A:) Farnesy 23.2 9.3 0.00068 29.2 0.3 22 53-74 241-262 (299)
5 d1rqja_ a.128.1.1 (A:) Farnesy 18.7 59 0.0043 24.3 4.3 58 26-83 64-122 (299)
6 d2a1jb1 a.60.2.5 (B:219-296) D 13.3 25 0.0018 21.4 0.6 40 39-78 30-71 (78)
7 d1oeyj_ d.15.2.2 (J:) Neutroph 13.0 12 0.00084 25.1 -1.2 10 46-55 51-60 (105)
8 d1uspa_ d.227.1.1 (A:) Organic 11.9 66 0.0048 20.6 2.6 47 7-53 23-71 (137)
9 d2onfa1 d.227.1.1 (A:1-139) Hy 8.4 70 0.0051 20.6 1.6 42 5-46 20-62 (139)
10 d1lqla_ d.227.1.1 (A:) Hypothe 8.4 1.3E+02 0.0092 19.5 3.0 38 7-45 23-60 (141)
No 1
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=40.90 E-value=4.7 Score=27.03 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=13.5
Q ss_pred chhhHhcCCccccee
Q 031079 51 VEGDRNVGKMSPLVR 65 (166)
Q Consensus 51 ie~Dr~aGKrTLaVr 65 (166)
.|.|..+||||.-+|
T Consensus 12 fe~dIlsGkKTITIR 26 (103)
T d1te7a_ 12 FQDDILAGRKTITIR 26 (103)
T ss_dssp HHHHHHTCCCEEEEE
T ss_pred hhHHHhcCCceEEec
Confidence 589999999999887
No 2
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.34 E-value=6.4 Score=30.85 Aligned_cols=24 Identities=8% Similarity=-0.064 Sum_probs=20.6
Q ss_pred HHHHhcCCCCchhhHhcCCcccce
Q 031079 41 LILFCSHFHQVEGDRNVGKMSPLV 64 (166)
Q Consensus 41 aIL~vNN~RDie~Dr~aGKrTLaV 64 (166)
+.=++|-+||+.+|.+.||.-+|.
T Consensus 173 AlQltNIlRDi~eD~~~gR~YlP~ 196 (333)
T d1ezfa_ 173 FLQKTNIIRDYLEDQQGGREFWPQ 196 (333)
T ss_dssp HHHHHHHHHTHHHHHHHTCCCSCH
T ss_pred HHHHHHHHHhhHHHHhCCcEECCH
Confidence 455678889999999999999985
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=25.74 E-value=5 Score=30.71 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=0.0
Q ss_pred CchhhHhcCCcccceecCcccHHH
Q 031079 50 QVEGDRNVGKMSPLVRLGTERGSV 73 (166)
Q Consensus 50 Die~Dr~aGKrTLaVrLG~~~A~~ 73 (166)
+.-+|.+.||.|+|+.+|.+.|..
T Consensus 232 ~~g~Di~~gK~T~p~i~a~~~a~~ 255 (290)
T d1rtra_ 232 KVGSDLENNKSTYVSLLGKDGAED 255 (290)
T ss_dssp ----------CCHHHHHHHHHHHH
T ss_pred CcccHhhcCCccHHHHHHHHHHHH
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=23.17 E-value=9.3 Score=29.18 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=18.6
Q ss_pred hhHhcCCcccceecCcccHHHH
Q 031079 53 GDRNVGKMSPLVRLGTERGSVV 74 (166)
Q Consensus 53 ~Dr~aGKrTLaVrLG~~~A~~l 74 (166)
+|.+.||.|+|+.+|.+.++..
T Consensus 241 ~Dl~egK~Tlp~i~~le~a~~~ 262 (299)
T d1rqja_ 241 ADQQLGKSTYPALLGLEQARKK 262 (299)
T ss_dssp HHHHHTCCCHHHHHCHHHHHHH
T ss_pred hHHHCCChhHHHHHHHHHHHHH
Confidence 5888899999999999887654
No 5
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=18.65 E-value=59 Score=24.27 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchh-hHhcCCcccceecCcccHHHHHHHHHHHHH
Q 031079 26 ATVLSASLLVGLTTSLILFCSHFHQVEG-DRNVGKMSPLVRLGTERGSVVVKWAVMILY 83 (166)
Q Consensus 26 ~~~ll~sl~~Gll~~aIL~vNN~RDie~-Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay 83 (166)
-.+.-++.++=++=++-|.--++.|.+. |.+-|+.|.-.+.|...|...=-.++..+|
T Consensus 64 ~~~~~~A~aiEllH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~ 122 (299)
T d1rqja_ 64 NTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAF 122 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHH
Confidence 3456678889999999999999999997 589999999999998877533333333333
No 6
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.33 E-value=25 Score=21.36 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=32.7
Q ss_pred HHHHHHhcCCCCchhhHhcCCccccee--cCcccHHHHHHHH
Q 031079 39 TSLILFCSHFHQVEGDRNVGKMSPLVR--LGTERGSVVVKWA 78 (166)
Q Consensus 39 ~~aIL~vNN~RDie~Dr~aGKrTLaVr--LG~~~A~~ly~~l 78 (166)
.++-.++++|.+++.=+.+....|.-. +|.+.|+.++.++
T Consensus 30 ~~a~~L~~~F~s~~~i~~A~~eeL~~i~GiG~~~A~~i~~~f 71 (78)
T d2a1jb1 30 TDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVL 71 (78)
T ss_dssp HHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHhhhHHHHHHhhhhhHHHHHHHHHHH
Confidence 355667788999999888888888877 9999999888654
No 7
>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.01 E-value=12 Score=25.07 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=7.9
Q ss_pred cCCCCchhhH
Q 031079 46 SHFHQVEGDR 55 (166)
Q Consensus 46 NN~RDie~Dr 55 (166)
=|+||.|+|.
T Consensus 51 LNYrD~eGDL 60 (105)
T d1oeyj_ 51 LNYRDAEGDL 60 (105)
T ss_dssp EEEECTTSCE
T ss_pred eeeecCCCCE
Confidence 3889999883
No 8
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=11.87 E-value=66 Score=20.59 Aligned_cols=47 Identities=11% Similarity=-0.098 Sum_probs=33.1
Q ss_pred CCCCCCCCcccccce--eeehHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 031079 7 CHNIDSDGFDRENLC--LSITATVLSASLLVGLTTSLILFCSHFHQVEG 53 (166)
Q Consensus 7 ~~~~~~~~~~~~~~~--~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~ 53 (166)
+|.++.+.|...++. -..++.-++++...+|+...+..+-+-+.++-
T Consensus 23 ~~~~~~~~p~~~gG~~~~g~~P~elllaAlasC~~~t~~~~a~~~gi~~ 71 (137)
T d1uspa_ 23 RLNLDLSVPAEMGGDGGPGTNPEQLFAAGYAACFQGALGVVSRRQKIDV 71 (137)
T ss_dssp SCEEEBCCCGGGTSCCCSCBCHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ceeeecccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 355666666655443 46788878888889999988888877666654
No 9
>d2onfa1 d.227.1.1 (A:1-139) Hypothetical protein Ta0195 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=8.44 E-value=70 Score=20.59 Aligned_cols=42 Identities=17% Similarity=0.025 Sum_probs=29.2
Q ss_pred ccCCCCCCCCcccc-cceeeehHHHHHHHHHHHHHHHHHHHhc
Q 031079 5 FPCHNIDSDGFDRE-NLCLSITATVLSASLLVGLTTSLILFCS 46 (166)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~~~~~~~~ll~sl~~Gll~~aIL~vN 46 (166)
...|.|..|.|... |..-..++.-++++...||+...+..+-
T Consensus 20 ~~~~~i~~D~p~~~GG~~~g~~P~elllaala~C~~~~~~~~a 62 (139)
T d2onfa1 20 VGDHRIEVDSPPEFGGPEGQLYPETLFPSVLASCLLTTFLEFK 62 (139)
T ss_dssp ETTEEEEEECCGGGTCCSSSBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCcEEEeecCcccCCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888888744 3355677777777777888887766543
No 10
>d1lqla_ d.227.1.1 (A:) Hypothetical protein MPN625 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=8.41 E-value=1.3e+02 Score=19.48 Aligned_cols=38 Identities=11% Similarity=-0.063 Sum_probs=25.3
Q ss_pred CCCCCCCCcccccceeeehHHHHHHHHHHHHHHHHHHHh
Q 031079 7 CHNIDSDGFDRENLCLSITATVLSASLLVGLTTSLILFC 45 (166)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ll~sl~~Gll~~aIL~v 45 (166)
.|.|..+.++..+.. ..++.-++++...||+...+...
T Consensus 23 ~~~i~~d~~~~~~~~-G~~P~elllaaLa~C~~~~~~~~ 60 (141)
T d1lqla_ 23 QFQITLDARPKHTAK-GFGPLAALLSGLAACELATANLM 60 (141)
T ss_dssp TEEEEECCSCTTTCS-SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEecCCCCCCCC-CcCHHHHHHHHHHHHHHHHHHHH
Confidence 577888877755544 46777666666677777666544
Done!