BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031080
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80877|EF4L1_ARATH Protein ELF4-LIKE 1 OS=Arabidopsis thaliana GN=EFL1 PE=2 SV=1
Length = 125
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 60/78 (76%)
Query: 45 DAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVS 104
D E W+TLS FK+ Q LD NR LI+RVNENH+SRIPDN+S+NV LI EINGNIS+V+
Sbjct: 34 DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93
Query: 105 IYSDLSANFCNIVSQRRR 122
IYSDLS NF QRRR
Sbjct: 94 IYSDLSLNFAKKFDQRRR 111
>sp|O04211|ELF4_ARATH Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1
Length = 111
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 60/74 (81%)
Query: 41 EEEYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNIS 100
E+ D W L ++F+QVQ+VLD NRSLI++VN+NH SR+ DNMSKNV LI+E+NGNIS
Sbjct: 18 EQGEDPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNIS 77
Query: 101 KVVSIYSDLSANFC 114
KVV++YSDL+ +F
Sbjct: 78 KVVNMYSDLNTSFS 91
>sp|Q8S8F5|EF4L3_ARATH Protein ELF4-LIKE 3 OS=Arabidopsis thaliana GN=EFL3 PE=3 SV=1
Length = 109
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 50/72 (69%)
Query: 43 EYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKV 102
+ D + T KSF QVQ +LD+NR LI +N+NH S+IPDN+ +NV LIRE+N N+ +V
Sbjct: 15 QMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRV 74
Query: 103 VSIYSDLSANFC 114
+Y DLS NF
Sbjct: 75 AHLYVDLSNNFS 86
>sp|Q570U6|EF4L4_ARATH Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1
Length = 114
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%)
Query: 39 SDEEEYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGN 98
D D + + KSF VQ +LD NR LI +N+NH S+ PDN+ +NV LI+E+N N
Sbjct: 10 GDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNN 69
Query: 99 ISKVVSIYSDLSANFCNIV 117
I +V S+Y DLS +F V
Sbjct: 70 IRRVASLYGDLSHSFARSV 88
>sp|Q94BS8|EF4L2_ARATH Protein ELF4-LIKE 2 OS=Arabidopsis thaliana GN=EFL2 PE=2 SV=1
Length = 119
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 47/75 (62%)
Query: 43 EYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKV 102
+ D + KSF QVQ +LD NR LI +N+NH S+ D++ +NV LIRE+N NI V
Sbjct: 18 QMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRELNNNIRTV 77
Query: 103 VSIYSDLSANFCNIV 117
S+Y DLS +F V
Sbjct: 78 ASLYGDLSHSFARSV 92
>sp|Q98262|ETF1_MCV1 Early transcription factor 70 kDa subunit OS=Molluscum contagiosum
virus subtype 1 GN=VETFS PE=3 SV=1
Length = 635
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 99 ISKVVSIYSDLSANFCNIVSQRRRRMRMRMNNGHRRRAQRIRREKMAFGEL 149
+S ++SI SD NF +I+ Q ++ ++ +N +RI R+K+++ EL
Sbjct: 175 LSNIISIMSDEGINFSDIIIQGKKVFQILLNENGVSVLKRILRDKISYYEL 225
>sp|Q6CJT2|ETT1_KLULA Enhancer of translation termination 1 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=ETT1 PE=3 SV=1
Length = 427
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 8/56 (14%)
Query: 64 DNNRSLIERV-NENH-LSRIPDNMSKNVELIREINGNISKVVSIYSDLSANFCNIV 117
D L+E V +ENH L++I NM++N E ++E ++++++D+S++FCN V
Sbjct: 237 DEGEELVEVVLHENHPLTKIKKNMNQNYEWLKE------NLLNLFNDISSSFCNKV 286
>sp|P0A374|CR1BA_BACTE Pesticidal crystal protein cry1Ba OS=Bacillus thuringiensis subsp.
entomocidus GN=cry1Ba PE=3 SV=1
Length = 1228
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 69 LIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIY 106
L+ R+ E +LS +P N E+ E+ G+I +S+Y
Sbjct: 981 LVHRIREAYLSELPVIPGVNAEIFEELEGHIITAISLY 1018
>sp|P0A373|CR1BA_BACTK Pesticidal crystal protein cry1Ba OS=Bacillus thuringiensis subsp.
kurstaki GN=cry1Ba PE=2 SV=1
Length = 1228
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 69 LIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIY 106
L+ R+ E +LS +P N E+ E+ G+I +S+Y
Sbjct: 981 LVHRIREAYLSELPVIPGVNAEIFEELEGHIITAISLY 1018
>sp|Q45739|CR1BB_BACTU Pesticidal crystal protein cry1Bb OS=Bacillus thuringiensis GN=cry1Bb
PE=2 SV=1
Length = 1229
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 69 LIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIY 106
L+ R+ E +LS +P N E+ E+ G+I +S+Y
Sbjct: 986 LVHRIREAYLSELPVIPGVNAEIFEELEGHIITAMSLY 1023
>sp|O83640|SYW_TREPA Tryptophan--tRNA ligase OS=Treponema pallidum (strain Nichols)
GN=trpS PE=3 SV=1
Length = 337
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 20 NTNERSKVNNKKGGGRDDDSDEEEYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLS 79
NT+E + + GR D++ ++ A A NT + + + L+ + + RV E +
Sbjct: 250 NTDEVAHFKERYRAGRVGDTEVKDALARALNTFLEPIRARRAQLEQQPAYLARVLEEGCA 309
Query: 80 RIPDNMSKNVELIREING 97
R+ K ++ ++E G
Sbjct: 310 RMRAEARKTMQRVKEAMG 327
>sp|A7MLX9|MLTC_CROS8 Membrane-bound lytic murein transglycosylase C OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=mltC PE=3 SV=2
Length = 360
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 49 WNTLSKSFK-QVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIYS 107
W T S+S+ Q+ +D + + +N +L I + S+ +I NG V+ ++S
Sbjct: 253 WGTPSRSYLFDPQSNIDTGTAYLAMLNNVYLGGITNPTSRRYAVITAYNGGAGSVLRVFS 312
Query: 108 DLSANFCNIVSQ 119
NI++Q
Sbjct: 313 SDKDQAVNIINQ 324
>sp|Q10030|YQ91_CAEEL Uncharacterized protein C27D6.1 OS=Caenorhabditis elegans
GN=C27D6.1 PE=4 SV=1
Length = 782
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 73 VNENHLSRIPDNMSKNVELIREINGNISKVVSIYSD 108
VN+NH+S + D++ N E REI G K ++I D
Sbjct: 390 VNQNHVSTLMDHLEINKEQSREIQGICKKEIAIRQD 425
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,781,233
Number of Sequences: 539616
Number of extensions: 2301239
Number of successful extensions: 15015
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 147
Number of HSP's that attempted gapping in prelim test: 14298
Number of HSP's gapped (non-prelim): 743
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)