Query 031080
Match_columns 166
No_of_seqs 53 out of 55
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 14:04:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wr6_A ADP-ribosylation factor 45.5 37 0.0013 24.7 4.9 57 42-110 33-89 (111)
2 2wh0_Q Pkcev3, protein kinase 39.4 13 0.00044 22.8 1.4 14 91-104 14-27 (31)
3 4afl_A P29ING4, inhibitor of g 34.9 13 0.00045 25.6 1.1 19 81-99 16-34 (104)
4 2cp8_A NEXT to BRCA1 gene 1 pr 27.6 20 0.0007 23.8 1.0 20 86-105 25-44 (54)
5 1oxz_A ADP-ribosylation factor 25.4 1.7E+02 0.0058 23.0 6.1 55 45-111 105-159 (186)
6 3kv9_A JMJC domain-containing 22.6 1.8E+02 0.006 25.3 6.2 33 71-104 354-386 (397)
7 1wrd_A TOM1, target of MYB pro 22.3 1.9E+02 0.0064 20.3 5.3 58 41-111 37-94 (103)
8 3lm2_A Putative kinase; struct 20.6 37 0.0013 26.4 1.4 19 143-163 103-121 (226)
9 2fup_A Hypothetical protein PA 19.6 63 0.0022 22.6 2.3 27 46-72 92-118 (157)
10 1o3x_A ADP-ribosylation factor 18.6 1.7E+02 0.0058 21.9 4.6 54 45-110 80-133 (140)
No 1
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=45.53 E-value=37 Score=24.68 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=44.9
Q ss_pred cccCHHHHHHHHHhHHHHHHHhhhhHHHHHHHhhhcccCCCCcchhhHHHHHHHhhhHHHHHHHhhhhh
Q 031080 42 EEYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSDLS 110 (166)
Q Consensus 42 e~~D~kvw~tfqksF~QVQ~ILDqNRlLInEINqNHeSriPDnLsRNV~LIRELN~NIskVV~LYsDLS 110 (166)
.+.|.++.+-|-.+-++.|-.|-+ ||.+...|.+. ++=|=++|..|..|+.-|..+.
T Consensus 33 ~~~d~ell~ELy~~ck~~qp~i~k---L~~e~~ddde~---------l~elL~~ND~ln~vi~rY~~~~ 89 (111)
T 1wr6_A 33 SDGDRELMKELFDQCENKRRTLFK---LASETEDNDNS---------LGDILQASDNLSRVINSYKTII 89 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH---HHHTCCTTCSS---------HHHHHHHHHHHHHHHTHHHHTT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHH---HHHHhccCHHH---------HHHHHHHhHHHHHHHHHHHHHh
Confidence 455678888888888888887765 88887766654 4667789999999999998774
No 2
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=39.39 E-value=13 Score=22.78 Aligned_cols=14 Identities=43% Similarity=0.631 Sum_probs=11.9
Q ss_pred HHHHHhhhHHHHHH
Q 031080 91 LIREINGNISKVVS 104 (166)
Q Consensus 91 LIRELN~NIskVV~ 104 (166)
-|+||-+||+|..+
T Consensus 14 eikelennirkals 27 (31)
T 2wh0_Q 14 EIKELENNIRKALS 27 (31)
T ss_pred HHHHHHHHHHHHhc
Confidence 48999999999764
No 3
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=34.86 E-value=13 Score=25.64 Aligned_cols=19 Identities=21% Similarity=0.627 Sum_probs=13.9
Q ss_pred CCCcchhhHHHHHHHhhhH
Q 031080 81 IPDNMSKNVELIREINGNI 99 (166)
Q Consensus 81 iPDnLsRNV~LIRELN~NI 99 (166)
+|.-|.|+..+||||=.-.
T Consensus 16 LP~El~r~~~~irelD~~~ 34 (104)
T 4afl_A 16 LPFELQRNFQLMRDLDQRT 34 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 5777888888888876433
No 4
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.59 E-value=20 Score=23.76 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=17.7
Q ss_pred hhhHHHHHHHhhhHHHHHHH
Q 031080 86 SKNVELIREINGNISKVVSI 105 (166)
Q Consensus 86 sRNV~LIRELN~NIskVV~L 105 (166)
.+|+.+.+..|+|+.++|+.
T Consensus 25 ~~N~~aL~~~~gnv~~aI~~ 44 (54)
T 2cp8_A 25 QLNLRLLKKHNYNILQVVTE 44 (54)
T ss_dssp HHHHHHHTTTTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 57999999999999999864
No 5
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=25.37 E-value=1.7e+02 Score=23.00 Aligned_cols=55 Identities=18% Similarity=0.340 Sum_probs=41.7
Q ss_pred CHHHHHHHHHhHHHHHHHhhhhHHHHHHHhhhcccCCCCcchhhHHHHHHHhhhHHHHHHHhhhhhh
Q 031080 45 DAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSDLSA 111 (166)
Q Consensus 45 D~kvw~tfqksF~QVQ~ILDqNRlLInEINqNHeSriPDnLsRNV~LIRELN~NIskVV~LYsDLS~ 111 (166)
|.++.+.|-.+-++.|-.|-+ ||.+...|.+. ++=|=++|..|.+|+.-|..+..
T Consensus 105 d~Ell~eL~~~Ck~~qp~i~~---Li~e~~ddee~---------L~elL~~ND~Ln~vl~kY~~~~~ 159 (186)
T 1oxz_A 105 SEDLMKELYQRCERMRPTLFR---LASDTEDNDEA---------LAEILQANDNLTQVINLYKQLVR 159 (186)
T ss_dssp THHHHHHHHHHHHHHHHHHHH---HHHHCCSCHHH---------HHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHHccCCHHH---------HHHHHHhhHHHHHHHHHHHHHhc
Confidence 678888888888888877754 77776555443 35567899999999999988744
No 6
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=22.61 E-value=1.8e+02 Score=25.35 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=27.5
Q ss_pred HHHhhhcccCCCCcchhhHHHHHHHhhhHHHHHH
Q 031080 71 ERVNENHLSRIPDNMSKNVELIREINGNISKVVS 104 (166)
Q Consensus 71 nEINqNHeSriPDnLsRNV~LIRELN~NIskVV~ 104 (166)
.+...-|++.||+++ +=+.||+||..-|+-|-+
T Consensus 354 ~~~~~~~~~~~p~~~-~~~~~~~~l~~~~~~~~~ 386 (397)
T 3kv9_A 354 KELVSEHAFEIPDNV-RPGHLIKELSKVIRAIEE 386 (397)
T ss_dssp TTTGGGTGGGSCTTC-CHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCcC-CHHHHHHHHHHHHHHHHh
Confidence 355667999999999 599999999988877654
No 7
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=22.25 E-value=1.9e+02 Score=20.32 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=39.2
Q ss_pred CcccCHHHHHHHHHhHHHHHHHhhhhHHHHHHHhhhcccCCCCcchhhHHHHHHHhhhHHHHHHHhhhhhh
Q 031080 41 EEEYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSDLSA 111 (166)
Q Consensus 41 ~e~~D~kvw~tfqksF~QVQ~ILDqNRlLInEINqNHeSriPDnLsRNV~LIRELN~NIskVV~LYsDLS~ 111 (166)
..+.|.++.+-|-.+-++.|-.+-+ ||.+. .|.+ =++=+=++|..|.+|+.-|..+..
T Consensus 37 ~~~~~~el~~eL~~~c~~~qp~i~~---li~~~-~dee---------~l~~lL~~ND~L~~vl~ry~~~~~ 94 (103)
T 1wrd_A 37 AEPADLELLQELNRTCRAMQQRVLE---LIPQI-ANEQ---------LTEELLIVNDNLNNVFLRHERFER 94 (103)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH---HHHHC-CCHH---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHH---HHhcc-CCHH---------HHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3345667777777777777766643 56543 3322 144567899999999999998754
No 8
>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Probab=20.64 E-value=37 Score=26.42 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=15.7
Q ss_pred hhhccccccCcceeeeeeecc
Q 031080 143 KMAFGELWPLRDCFIYITLST 163 (166)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~ 163 (166)
-+|+||.|. +.|+|+++.|
T Consensus 103 aaalge~~~--~~~~~l~~Gt 121 (226)
T 3lm2_A 103 MQAIGSYNG--GRMLFLGLGT 121 (226)
T ss_dssp HHHHHHCCS--SEEEEEEESS
T ss_pred HHHHHHhhc--CcEEEEEeCC
Confidence 357899887 7899999987
No 9
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=19.59 E-value=63 Score=22.58 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=22.1
Q ss_pred HHHHHHHHHhHHHHHHHhhhhHHHHHH
Q 031080 46 AEAWNTLSKSFKQVQTVLDNNRSLIER 72 (166)
Q Consensus 46 ~kvw~tfqksF~QVQ~ILDqNRlLInE 72 (166)
.+.|+.+.....+++.+=+.|..||++
T Consensus 92 ~~~~~~l~~l~~~~~~~N~~Ng~Li~~ 118 (157)
T 2fup_A 92 LARGDELGELLERCQQANLRNGRIIRA 118 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999998863
No 10
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=18.65 E-value=1.7e+02 Score=21.86 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=37.7
Q ss_pred CHHHHHHHHHhHHHHHHHhhhhHHHHHHHhhhcccCCCCcchhhHHHHHHHhhhHHHHHHHhhhhh
Q 031080 45 DAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSDLS 110 (166)
Q Consensus 45 D~kvw~tfqksF~QVQ~ILDqNRlLInEINqNHeSriPDnLsRNV~LIRELN~NIskVV~LYsDLS 110 (166)
|.++.+.|-.+-++.|-.|-+ ||.+...|.+. ++=|=++|..|.+|+.-|..+.
T Consensus 80 d~Ell~eL~~~ck~~qp~i~~---li~e~~ddee~---------l~elL~~ND~ln~vl~kY~~~~ 133 (140)
T 1o3x_A 80 SEDLMKELYQRCERMRPTLFR---LASDTEDNDEA---------LAEILQANDNLTQVINLYKQLV 133 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHTTCTTCHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHHccCCHHH---------HHHHHHhhHHHHHHHHHHHHHh
Confidence 567777777777777766644 66555444332 3446789999999999998764
Done!