Query 031080
Match_columns 166
No_of_seqs 53 out of 55
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 14:04:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031080.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031080hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gcla1 b.55.1.10 (A:237-474) 60.7 1.1 8.1E-05 33.9 0.7 16 145-160 155-170 (238)
2 d2di4a1 a.269.1.1 (A:406-607) 18.5 44 0.0032 22.8 3.2 32 42-73 140-171 (202)
3 d3ebta1 d.17.4.9 (A:1-131) Unc 16.6 25 0.0018 21.3 1.2 24 85-108 1-29 (131)
4 d2daha1 a.5.2.1 (A:8-48) Ubiqu 16.3 46 0.0034 19.3 2.4 21 85-105 17-37 (41)
5 d2ce7a1 a.269.1.1 (A:411-603) 15.5 58 0.0043 22.1 3.2 31 43-73 142-172 (193)
6 d1q3ea_ b.82.3.2 (A:) HCN pace 15.2 1E+02 0.0075 20.0 4.3 40 79-120 51-90 (193)
7 d1o3xa_ a.7.8.1 (A:) ADP-ribos 14.8 1.4E+02 0.01 19.5 5.0 57 43-111 52-108 (112)
8 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 14.7 46 0.0033 21.4 2.3 20 92-111 171-190 (196)
9 d2bbha1 d.328.1.1 (A:13-244) M 14.2 50 0.0037 22.6 2.5 59 91-156 161-220 (232)
10 d1sj7a1 a.215.1.1 (A:488-654) 13.9 57 0.0041 24.2 2.9 37 84-120 99-139 (167)
No 1
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=60.70 E-value=1.1 Score=33.91 Aligned_cols=16 Identities=38% Similarity=0.837 Sum_probs=13.5
Q ss_pred hccccccCcceeeeee
Q 031080 145 AFGELWPLRDCFIYIT 160 (166)
Q Consensus 145 ~~~~~~~~~~~~~~~~ 160 (166)
.=|-||||.+||+|+.
T Consensus 155 ~~G~L~pl~~~llf~~ 170 (238)
T d2gcla1 155 NEGYLYPLDNAFFFLT 170 (238)
T ss_dssp EEEEEEECSSEEEEES
T ss_pred ccEEEEEccCeEEEec
Confidence 3488999999999964
No 2
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=18.51 E-value=44 Score=22.81 Aligned_cols=32 Identities=13% Similarity=0.398 Sum_probs=28.3
Q ss_pred cccCHHHHHHHHHhHHHHHHHhhhhHHHHHHH
Q 031080 42 EEYDAEAWNTLSKSFKQVQTVLDNNRSLIERV 73 (166)
Q Consensus 42 e~~D~kvw~tfqksF~QVQ~ILDqNRlLInEI 73 (166)
..+|.++=.-+++.+.++..||.+|+.++..|
T Consensus 140 ~~id~ev~~ll~~a~~~a~~iL~~~~~~l~~l 171 (202)
T d2di4a1 140 REIDEEVKRIITEQYEKAKAIVEEYKEPLKAV 171 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 35788888899999999999999999998876
No 3
>d3ebta1 d.17.4.9 (A:1-131) Uncharacterized protein BPSS0132 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=16.58 E-value=25 Score=21.28 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=16.1
Q ss_pred chhhHHHHHHHh-----hhHHHHHHHhhh
Q 031080 85 MSKNVELIREIN-----GNISKVVSIYSD 108 (166)
Q Consensus 85 LsRNV~LIRELN-----~NIskVV~LYsD 108 (166)
|+.|..+|+++. +++..+.++|++
T Consensus 1 M~~n~~~v~~~~~a~~~~D~~~~~~~~a~ 29 (131)
T d3ebta1 1 MSNNMQTVRESYEAFHRRDLPGVLAALAP 29 (131)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHTTEEE
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHhCc
Confidence 456777777764 367777776665
No 4
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.33 E-value=46 Score=19.31 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=18.3
Q ss_pred chhhHHHHHHHhhhHHHHHHH
Q 031080 85 MSKNVELIREINGNISKVVSI 105 (166)
Q Consensus 85 LsRNV~LIRELN~NIskVV~L 105 (166)
=.+|+.-.++.||||.+.|+.
T Consensus 17 ~~~Ni~AL~~t~Gdv~~Aie~ 37 (41)
T d2daha1 17 REANLQALIATGGDVDAAVEK 37 (41)
T ss_dssp HHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 358999999999999998875
No 5
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=15.47 E-value=58 Score=22.06 Aligned_cols=31 Identities=10% Similarity=0.391 Sum_probs=27.3
Q ss_pred ccCHHHHHHHHHhHHHHHHHhhhhHHHHHHH
Q 031080 43 EYDAEAWNTLSKSFKQVQTVLDNNRSLIERV 73 (166)
Q Consensus 43 ~~D~kvw~tfqksF~QVQ~ILDqNRlLInEI 73 (166)
..|.++=..+.+.+..+..+|..|+.++..|
T Consensus 142 ~id~ev~~ll~~a~~~a~~iL~~~~~~l~~l 172 (193)
T d2ce7a1 142 KIDEEVKKIVTNCYERAKEIIRKYRKQLDNI 172 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4677788888999999999999999998876
No 6
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.16 E-value=1e+02 Score=19.99 Aligned_cols=40 Identities=5% Similarity=0.252 Sum_probs=26.8
Q ss_pred cCCCCcchhhHHHHHHHhhhHHHHHHHhhhhhhhHHHHHhhh
Q 031080 79 SRIPDNMSKNVELIREINGNISKVVSIYSDLSANFCNIVSQR 120 (166)
Q Consensus 79 SriPDnLsRNV~LIRELN~NIskVV~LYsDLS~sFs~~v~qr 120 (166)
+.+|..|.+. ++.++++.+=+=+.+.+.++.+|...+...
T Consensus 51 ~~lp~~l~~~--i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~ 90 (193)
T d1q3ea_ 51 GELNGPLREE--IVNFNCRKLVASMPLFANADPNFVTAMLTK 90 (193)
T ss_dssp HHSCHHHHHH--HHHHHTHHHHHHCHHHHTSCHHHHHHHHTT
T ss_pred HHCCcchhHH--HHHHHHHHHHhcchHHHhhhHHHHHHHHHH
Confidence 4456665543 446677776666778888888888777543
No 7
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.77 E-value=1.4e+02 Score=19.55 Aligned_cols=57 Identities=18% Similarity=0.327 Sum_probs=37.7
Q ss_pred ccCHHHHHHHHHhHHHHHHHhhhhHHHHHHHhhhcccCCCCcchhhHHHHHHHhhhHHHHHHHhhhhhh
Q 031080 43 EYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSDLSA 111 (166)
Q Consensus 43 ~~D~kvw~tfqksF~QVQ~ILDqNRlLInEINqNHeSriPDnLsRNV~LIRELN~NIskVV~LYsDLS~ 111 (166)
+.+.++.+-|-.+-.+.|-.+-+ ||.+..+|- .=++=|=++|..|.+|+.-|..+..
T Consensus 52 ~~~~ell~eL~~~c~~~qp~i~~---li~~~~dde---------e~l~elL~~ND~L~~vl~rY~~~~~ 108 (112)
T d1o3xa_ 52 GSSEDLMKELYQRCERMRPTLFR---LASDTEDND---------EALAEILQANDNLTQVINLYKQLVR 108 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHTTCTTCH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH---HHhhcCCcH---------HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556777777777777766543 444332222 2256677899999999999987643
No 8
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.68 E-value=46 Score=21.44 Aligned_cols=20 Identities=5% Similarity=0.478 Sum_probs=16.2
Q ss_pred HHHHhhhHHHHHHHhhhhhh
Q 031080 92 IREINGNISKVVSIYSDLSA 111 (166)
Q Consensus 92 IRELN~NIskVV~LYsDLS~ 111 (166)
|++|-..|.-|-+||.||+.
T Consensus 171 I~~Ie~sI~eL~~iF~dLa~ 190 (196)
T d1fioa_ 171 LLKLEKSMAELTQLFNDMEE 190 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 66788888888888888874
No 9
>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}
Probab=14.23 E-value=50 Score=22.55 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=29.6
Q ss_pred HHHHHhhhHHHHHHHhhhhhhhHHHHHhhhhhccccccccchhhhHHHHHHhhhhc-cccccCccee
Q 031080 91 LIREINGNISKVVSIYSDLSANFCNIVSQRRRRMRMRMNNGHRRRAQRIRREKMAF-GELWPLRDCF 156 (166)
Q Consensus 91 LIRELN~NIskVV~LYsDLS~sFs~~v~qrr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 156 (166)
|+..+..+...+++.+.+--..+...+ -...++.+.++..++||+-+.| --+||+|+-+
T Consensus 161 lld~ivd~y~~~l~~l~~~id~lE~~v-------~~~~~~~~l~~i~~lrr~l~~lrr~l~p~revl 220 (232)
T d2bbha1 161 LIDALVDDYFVLLEKIDDEIDVLEEEV-------LERPEKETVQRTHQLKRNLVELRKTIWPLREVL 220 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444433333222 2234455666777777777666 3578887743
No 10
>d1sj7a1 a.215.1.1 (A:488-654) A middle domain of Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.91 E-value=57 Score=24.18 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=32.3
Q ss_pred cchhhHHHHHHH----hhhHHHHHHHhhhhhhhHHHHHhhh
Q 031080 84 NMSKNVELIREI----NGNISKVVSIYSDLSANFCNIVSQR 120 (166)
Q Consensus 84 nLsRNV~LIREL----N~NIskVV~LYsDLS~sFs~~v~qr 120 (166)
.|+|+|.||--| ++|=.++++.=..|.+-|+..+..-
T Consensus 99 emsk~vrl~aAL~dd~~~~g~~Ll~AAr~L~~AfsdLLkaa 139 (167)
T d1sj7a1 99 EMSRGVKLLAALLEDEGGNGRPLLQAAKGLAGAVSELLRSA 139 (167)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHhc
Confidence 388999999998 5678899999999999999998763
Done!