BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031081
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|19HC|A Chain A, Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans
Atcc 27774
pdb|19HC|B Chain B, Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans
Atcc 27774
Length = 292
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 92 ENEAVPAVCGIRAIWVTPSNRRKGIASLLLDAVRRSFCGEIVLEKSQLAFSQPSSAG--- 148
++EA A C +TPS +KGIA LL + E VL ++ +A P A
Sbjct: 122 DDEAWCATCHDITPSMTPSEMQKGIAGTLLPGDNEALAAETVLAEATVAPVSPMLAPYKV 181
Query: 149 --KALASNY 155
ALA Y
Sbjct: 182 VIDALADKY 190
>pdb|2QG9|B Chain B, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
pdb|2QG9|D Chain D, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
Length = 153
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 20 GCLVAE-PIKEGFKLLSCFGDERTDGRILKKCRSHSATLQFGEISLQREVIKRASSVHSS 78
G ++A P + GFKLLS F TD RI + L GE+ ++++IK ++ S
Sbjct: 15 GTVIAHIPAQIGFKLLSLFKLTETDQRI-----TIGLNLPSGEMG-RKDLIKIENTFLSE 68
Query: 79 NAVDE 83
+ VD+
Sbjct: 69 DQVDQ 73
>pdb|2QGF|B Chain B, Structure Of Regulatory Chain Mutant H20a Of Asparate
Transcarbamoylase From E. Coli
pdb|2QGF|D Chain D, Structure Of Regulatory Chain Mutant H20a Of Asparate
Transcarbamoylase From E. Coli
Length = 153
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 24 AEPIKEGFKLLSCFGDERTDGRILKKCRSHSATLQFGEISLQREVIKRASSVHSSNAVDE 83
A P + GFKLLS F TD RI + L GE+ ++++IK ++ S + VD+
Sbjct: 20 AIPAQIGFKLLSLFKLTETDQRI-----TIGLNLPSGEMG-RKDLIKIENTFLSEDQVDQ 73
>pdb|9ATC|B Chain B, Atcase Y165f Mutant
Length = 146
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 26 PIKEGFKLLSCFGDERTDGRILKKCRSHSATLQFGEISLQREVIKRASSVHSSNAVDE 83
P + GFKLLS F TD RI + L GE+ ++++IK ++ S + VD+
Sbjct: 15 PAQIGFKLLSLFKLTETDQRI-----TIGLNLPSGEMG-RKDLIKIENTFLSEDQVDQ 66
>pdb|1NBE|B Chain B, Aspartate Transcarbamoylase Regulatory Chain Mutant
(T82a)
pdb|1NBE|D Chain D, Aspartate Transcarbamoylase Regulatory Chain Mutant
(T82a)
Length = 153
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 26 PIKEGFKLLSCFGDERTDGRILKKCRSHSATLQFGEISLQREVIKRASSVHSSNAVDE 83
P + GFKLLS F TD RI + L GE+ ++++IK ++ S + VD+
Sbjct: 22 PAQIGFKLLSLFKLTETDQRI-----TIGLNLPSGEMG-RKDLIKIENTFLSEDQVDQ 73
>pdb|1ACM|B Chain B, Arginine 54 In The Active Site Of Escherichia Coli
Aspartate Transcarbamoylase Is Critical For Catalysis:
A Site-Specific Mutagenesis, Nmr And X-Ray
Crystallography Study
pdb|1ACM|D Chain D, Arginine 54 In The Active Site Of Escherichia Coli
Aspartate Transcarbamoylase Is Critical For Catalysis:
A Site-Specific Mutagenesis, Nmr And X-Ray
Crystallography Study
pdb|5AT1|B Chain B, Structural Consequences Of Effector Binding To The T
State Of Aspartate Carbamoyltransferase. Crystal
Structures Of The Unligated And Atp-, And Ctp-Complexed
Enzymes At 2.6-Angstroms Resolution
pdb|5AT1|D Chain D, Structural Consequences Of Effector Binding To The T
State Of Aspartate Carbamoyltransferase. Crystal
Structures Of The Unligated And Atp-, And Ctp-Complexed
Enzymes At 2.6-Angstroms Resolution
pdb|8AT1|B Chain B, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-Angstroms Resolution And Neutral PH
pdb|8AT1|D Chain D, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-Angstroms Resolution And Neutral PH
pdb|1AT1|B Chain B, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral PH
pdb|1AT1|D Chain D, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral PH
pdb|8ATC|B Chain B, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|8ATC|D Chain D, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|2AT1|B Chain B, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|2AT1|D Chain D, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|3AT1|B Chain B, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|3AT1|D Chain D, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|4AT1|B Chain B, Structural Consequences Of Effector Binding To The T
State Of Aspartate Carbamoyltransferase. Crystal
Structures Of The Unligated And Atp-, And Ctp-Complexed
Enzymes At 2.6-Angstroms Resolution
pdb|4AT1|D Chain D, Structural Consequences Of Effector Binding To The T
State Of Aspartate Carbamoyltransferase. Crystal
Structures Of The Unligated And Atp-, And Ctp-Complexed
Enzymes At 2.6-Angstroms Resolution
pdb|6AT1|B Chain B, Structural Consequences Of Effector Binding To The T
State Of Aspartate Carbamoyltransferase. Crystal
Structures Of The Unligated And Atp-, And Ctp-Complexed
Enzymes At 2.6-Angstroms Resolution
pdb|6AT1|D Chain D, Structural Consequences Of Effector Binding To The T
State Of Aspartate Carbamoyltransferase. Crystal
Structures Of The Unligated And Atp-, And Ctp-Complexed
Enzymes At 2.6-Angstroms Resolution
pdb|7AT1|B Chain B, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-angstroms Resolution And Neutral P*h
pdb|7AT1|D Chain D, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-angstroms Resolution And Neutral P*h
Length = 153
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 26 PIKEGFKLLSCFGDERTDGRILKKCRSHSATLQFGEISLQREVIKRASSVHSSNAVDE 83
P + GFKLLS F TD RI + L GE+ ++++IK ++ S + VD+
Sbjct: 22 PAQIGFKLLSLFKLTETDQRI-----TIGLNLPSGEMG-RKDLIKIENTFLSEDQVDQ 73
>pdb|1D09|B Chain B, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl-L- Aspartate (Pala)
pdb|1D09|D Chain D, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl-L- Aspartate (Pala)
pdb|1EZZ|B Chain B, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1EZZ|D Chain D, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1F1B|B Chain B, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-state In The Presence Of
N-phosphonacetyl-l-aspartate
pdb|1F1B|D Chain D, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-state In The Presence Of
N-phosphonacetyl-l-aspartate
pdb|1I5O|B Chain B, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1I5O|D Chain D, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1SKU|B Chain B, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
pdb|1SKU|D Chain D, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
pdb|1Q95|G Chain G, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli:
A New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|H Chain H, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli:
A New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|I Chain I, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli:
A New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|J Chain J, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli:
A New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|K Chain K, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli:
A New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|L Chain L, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli:
A New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|G Chain G, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli:
A New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|H Chain H, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli:
A New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|I Chain I, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli:
A New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|J Chain J, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli:
A New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|K Chain K, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli:
A New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|L Chain L, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli:
A New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0C|B Chain B, Products In The T State Of Aspartate Transcarbamylase:
Crystal Structure Of The Phosphate And
N-Carbamyl-L-Aspartate Ligated Enzyme
pdb|1R0C|H Chain H, Products In The T State Of Aspartate Transcarbamylase:
Crystal Structure Of The Phosphate And
N-Carbamyl-L-Aspartate Ligated Enzyme
pdb|1TTH|B Chain B, Aspartate Transcarbamoylase Catalytic Chain Mutant
Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate)
(Pala)
pdb|1TTH|D Chain D, Aspartate Transcarbamoylase Catalytic Chain Mutant
Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate)
(Pala)
pdb|1TU0|B Chain B, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide
pdb|1TU0|D Chain D, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide
pdb|1TUG|B Chain B, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide, Malonate, And
Cytidine-5- Prime-Triphosphate (Ctp)
pdb|1TUG|D Chain D, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide, Malonate, And
Cytidine-5- Prime-Triphosphate (Ctp)
pdb|1XJW|B Chain B, The Structure Of E. Coli Aspartate Transcarbamoylase
Q137a Mutant In The R-State
pdb|1XJW|D Chain D, The Structure Of E. Coli Aspartate Transcarbamoylase
Q137a Mutant In The R-State
pdb|1ZA1|B Chain B, Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In The Presence Of Ctp At 2.20 A
Resolution
pdb|1ZA1|D Chain D, Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In The Presence Of Ctp At 2.20 A
Resolution
pdb|1ZA2|B Chain B, Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In The Presence Of Ctp, Carbamoyl
Phosphate At 2.50 A Resolution
pdb|1ZA2|D Chain D, Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In The Presence Of Ctp, Carbamoyl
Phosphate At 2.50 A Resolution
pdb|2A0F|B Chain B, Structure Of D236a Mutant E. Coli Aspartate
Transcarbamoylase In Presence Of Phosphonoacetamide At
2.90 A Resolution
pdb|2A0F|D Chain D, Structure Of D236a Mutant E. Coli Aspartate
Transcarbamoylase In Presence Of Phosphonoacetamide At
2.90 A Resolution
pdb|2AIR|B Chain B, T-State Active Site Of Aspartate
Transcarbamylase:crystal Structure Of The Carbamyl
Phosphate And L-Alanosine Ligated Enzyme
pdb|2AIR|H Chain H, T-State Active Site Of Aspartate
Transcarbamylase:crystal Structure Of The Carbamyl
Phosphate And L-Alanosine Ligated Enzyme
pdb|2FZC|B Chain B, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.10 Resolution
pdb|2FZC|D Chain D, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.10 Resolution
pdb|2FZG|B Chain B, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.25 Resolution
pdb|2FZG|D Chain D, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.25 Resolution
pdb|2FZK|B Chain B, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.50 Resolution
pdb|2FZK|D Chain D, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.50 Resolution
pdb|2H3E|B Chain B, Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In The Presence Of
N-Phosphonacetyl-L-Isoasparagine At 2.3a Resolution
pdb|2H3E|D Chain D, Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In The Presence Of
N-Phosphonacetyl-L-Isoasparagine At 2.3a Resolution
pdb|2HSE|B Chain B, Structure Of D236a E. Coli Aspartate Transcarbamoylase
In The Presence Of Phosphonoacetamide And L-Aspartate
At 2.60 A Resolution
pdb|2HSE|D Chain D, Structure Of D236a E. Coli Aspartate Transcarbamoylase
In The Presence Of Phosphonoacetamide And L-Aspartate
At 2.60 A Resolution
pdb|1RAA|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAA|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAB|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAB|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAC|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAC|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAD|B Chain B, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAD|D Chain D, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAE|B Chain B, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAE|D Chain D, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAF|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAF|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAG|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAG|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAH|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAH|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAI|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAI|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|2IPO|B Chain B, E. Coli Aspartate Transcarbamoylase Complexed With N-
Phosphonacetyl-l-asparagine
pdb|2IPO|D Chain D, E. Coli Aspartate Transcarbamoylase Complexed With N-
Phosphonacetyl-l-asparagine
pdb|3D7S|B Chain B, Crystal Structure Of Wild-Type E. Coli Asparate
Transcarbamoylase At Ph 8.5 At 2.80 A Resolution
pdb|3D7S|D Chain D, Crystal Structure Of Wild-Type E. Coli Asparate
Transcarbamoylase At Ph 8.5 At 2.80 A Resolution
pdb|3MPU|B Chain B, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|D Chain D, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|F Chain F, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|4E2F|D Chain D, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|B Chain B, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|J Chain J, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|L Chain L, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|H Chain H, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|F Chain F, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4F04|B Chain B, A Second Allosteric Site In E. Coli Aspartate
Transcarbamoylase: R- State Atcase With Utp Bound
pdb|4F04|D Chain D, A Second Allosteric Site In E. Coli Aspartate
Transcarbamoylase: R- State Atcase With Utp Bound
pdb|4FYV|B Chain B, Aspartate Transcarbamoylase Complexed With Dctp
pdb|4FYV|D Chain D, Aspartate Transcarbamoylase Complexed With Dctp
pdb|4FYW|B Chain B, E. Coli Aspartate Transcarbamoylase Complexed With Ctp
pdb|4FYW|D Chain D, E. Coli Aspartate Transcarbamoylase Complexed With Ctp
pdb|4FYX|B Chain B, E. Coli Aspartate Transcarbamoylase Complexed With Dctp,
Utp, And Mg2+
pdb|4FYX|D Chain D, E. Coli Aspartate Transcarbamoylase Complexed With Dctp,
Utp, And Mg2+
pdb|4FYY|B Chain B, E. Coli Aspartate Transcarbamoylase Complexed With Ctp,
Utp, And Mg2+
pdb|4FYY|D Chain D, E. Coli Aspartate Transcarbamoylase Complexed With Ctp,
Utp, And Mg2+
Length = 153
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 26 PIKEGFKLLSCFGDERTDGRILKKCRSHSATLQFGEISLQREVIKRASSVHSSNAVDE 83
P + GFKLLS F TD RI + L GE+ ++++IK ++ S + VD+
Sbjct: 22 PAQIGFKLLSLFKLTETDQRI-----TIGLNLPSGEMG-RKDLIKIENTFLSEDQVDQ 73
>pdb|3B5H|A Chain A, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|B Chain B, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|C Chain C, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|D Chain D, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
Length = 184
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 59 FGEISLQREVIKRASSVHSSNAVDEKHNGTIMCENEAVPAV 99
G ++Q R +V SS ++E ++C++E+VP V
Sbjct: 73 MGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPV 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,611,823
Number of Sequences: 62578
Number of extensions: 157188
Number of successful extensions: 297
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 8
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)