BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031082
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X7B|A Chain A, Crystal Structure Of The N-Terminal Acetylase Ard1 From
Sulfolobus Solfataricus P2
Length = 168
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 45 TIRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVE 104
T+R +D+ + +N L E + F++ +L + F VA N ++GYIM ++E
Sbjct: 14 TLRNARMDDIDQIIKINRLTLPENYPYYFFVEHLKEYGLAFFVA-IVDNSVVGYIMPRIE 72
Query: 105 ------GQGESW--HGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRAS 156
Q S GHV ++ V EYRR+ +A L+ A + L VR S
Sbjct: 73 WGFSNIKQLPSLVRKGHVVSIAVLEEYRRKGIATTLLEASMKSMKNDYNAEEIYLEVRVS 132
Query: 157 NTPAIKISD 165
N PAI + +
Sbjct: 133 NYPAIALYE 141
>pdb|3DSB|A Chain A, The Crystal Structure Of A Possible Acetyltransferase From
Clostridium Difficile 630
pdb|3DSB|B Chain B, The Crystal Structure Of A Possible Acetyltransferase From
Clostridium Difficile 630
Length = 157
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 114 VTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPA 160
+ +V V EYRR+ + L N +++I DK + L+V N A
Sbjct: 87 IQSVYVDKEYRRKGIFNYLFNYIKNICDKDENIVGXRLYVEKENINA 133
>pdb|1BO4|A Chain A, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
pdb|1BO4|B Chain B, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
Length = 168
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 117 VTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKI 163
+ VS E+RRQ +A L+NLL+ ++ + AY + + + PA+ +
Sbjct: 111 LAVSGEHRRQGIATALINLLKHEANAL-GAYVIYVQADYGDDPAVAL 156
>pdb|3T90|A Chain A, Crystal Structure Of Glucosamine-6-Phosphate
N-Acetyltransferase From Arabidopsis Thaliana
Length = 149
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 112 GHVTAVTVSPEYRRQQLAKKLMNLLED 138
GH+ V V +R +QL KK++ L D
Sbjct: 84 GHIEDVVVDSRFRGKQLGKKVVEFLMD 110
>pdb|3LOD|A Chain A, The Crystal Structure Of The Putative Acyl-Coa
N-Acyltransferase From Klebsiella Pneumoniae
Subsp.Pneumoniae Mgh 78578
Length = 162
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 108 ESWHGHVTAVTVSPEYRRQQLAKKLMNLLE 137
E G + V + P++R QQL +KL+ LE
Sbjct: 71 EEGFGEMKRVYIDPQHRGQQLGEKLLAALE 100
>pdb|2Q04|A Chain A, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
pdb|2Q04|B Chain B, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
pdb|2Q04|C Chain C, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
pdb|2Q04|D Chain D, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
pdb|2Q04|E Chain E, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
pdb|2Q04|F Chain F, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
Length = 211
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 92 GNRIMGYIMGKVEGQGESWHG-------HVTAVTVSPEYRRQQLAKKLMNL 135
GN I+GY+ E+W + A+ V+ +R QQ+ KKL+ +
Sbjct: 69 GNDIIGYVTFLYPDPYETWSEGNNPYILELGAIEVAARFRGQQIGKKLLEV 119
>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
Length = 468
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 131 KLMNLLEDISDKIDKAYFVDLFV-RASNTPAIKISD 165
+L+ +D+SD +D+ ++DL V R SN KI D
Sbjct: 193 QLIETRQDVSDLLDQDEYIDLVVPRGSNALVRKIKD 228
>pdb|3CQN|A Chain A, Crystal Structure Of The Lipocalin Domain Of Violaxanthin
De-Epoxidase (Vde) At Ph7
pdb|3CQN|B Chain B, Crystal Structure Of The Lipocalin Domain Of Violaxanthin
De-Epoxidase (Vde) At Ph7
pdb|3CQR|A Chain A, Crystal Structure Of The Lipocalin Domain Of Violaxanthin
De-Epoxidase (Vde) At Ph5
pdb|3CQR|B Chain B, Crystal Structure Of The Lipocalin Domain Of Violaxanthin
De-Epoxidase (Vde) At Ph5
Length = 185
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 77 YLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLL 136
YL D++ ++ N+ YI G+ ++W G+ AV + R L ++ L
Sbjct: 96 YLHYQDDWYILSSKIENKPEDYIFVYYRGRNDAWDGYGGAVVYT---RSSVLPNSIIPEL 152
Query: 137 EDISDKIDKAYFVDLFVRASNT 158
E + I + + F+R NT
Sbjct: 153 EKAAKSIGRDF--STFIRTDNT 172
>pdb|4FD4|A Chain A, Crystal Structure Of Mosquito Arylalkylamine
N-Acetyltransferase Like 5b
pdb|4FD4|B Chain B, Crystal Structure Of Mosquito Arylalkylamine
N-Acetyltransferase Like 5b
Length = 217
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 105 GQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKI 143
G +++H H+ A V P YR L ++L+ D+S K+
Sbjct: 122 GLEKAYHVHILA--VDPTYRGHSLGQRLLQFQMDLSKKL 158
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 26.2 bits (56), Expect = 8.8, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 94 RIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFV 153
R G + +EG+ + W H AVT P R +A+ N + I+ +AY V
Sbjct: 107 RHEGPLFRGLEGEVQVWXSHQDAVTAPPPGWR-VVAETEENPVAAIASPDGRAYGVQFHP 165
Query: 154 RASNTP 159
++TP
Sbjct: 166 EVAHTP 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,223,385
Number of Sequences: 62578
Number of extensions: 200114
Number of successful extensions: 557
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 31
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)