Query 031083
Match_columns 166
No_of_seqs 118 out of 1535
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 08:59:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 5.6E-43 1.2E-47 230.9 15.8 157 9-166 3-160 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 5E-41 1.1E-45 220.9 16.5 154 12-166 2-155 (200)
3 KOG0078 GTP-binding protein SE 100.0 3.1E-40 6.7E-45 220.7 17.0 156 10-166 7-162 (207)
4 KOG0098 GTPase Rab2, small G p 100.0 3.6E-40 7.9E-45 215.5 13.9 154 12-166 3-156 (216)
5 cd04121 Rab40 Rab40 subfamily. 100.0 2.8E-38 6.1E-43 215.7 19.1 153 12-166 3-155 (189)
6 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 7.6E-39 1.6E-43 210.8 15.3 154 12-166 19-173 (221)
7 KOG0394 Ras-related GTPase [Ge 100.0 8.8E-39 1.9E-43 208.6 13.7 154 13-166 7-166 (210)
8 cd04120 Rab12 Rab12 subfamily. 100.0 6.5E-38 1.4E-42 215.8 18.6 150 16-166 1-151 (202)
9 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.2E-37 2.7E-42 211.6 18.3 153 12-166 2-168 (182)
10 KOG0080 GTPase Rab18, small G 100.0 4.6E-38 1E-42 201.1 13.9 155 11-166 7-162 (209)
11 KOG0093 GTPase Rab3, small G p 100.0 3.3E-38 7.1E-43 199.0 13.0 156 10-166 16-171 (193)
12 cd04131 Rnd Rnd subfamily. Th 100.0 5.5E-37 1.2E-41 207.9 18.4 150 15-166 1-164 (178)
13 KOG0087 GTPase Rab11/YPT3, sma 100.0 2.3E-37 5E-42 206.3 15.4 158 8-166 7-164 (222)
14 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 7.9E-37 1.7E-41 213.8 18.8 157 8-166 6-176 (232)
15 cd04133 Rop_like Rop subfamily 100.0 1.2E-36 2.7E-41 205.6 18.7 149 16-166 2-161 (176)
16 cd04122 Rab14 Rab14 subfamily. 100.0 1.4E-36 2.9E-41 204.0 18.6 151 15-166 2-152 (166)
17 cd04117 Rab15 Rab15 subfamily. 100.0 4.9E-36 1.1E-40 200.4 18.7 150 16-166 1-150 (161)
18 KOG0086 GTPase Rab4, small G p 100.0 2.7E-37 6E-42 196.2 11.2 158 8-166 2-159 (214)
19 cd01867 Rab8_Rab10_Rab13_like 100.0 1E-35 2.2E-40 199.9 18.4 153 13-166 1-153 (167)
20 cd01875 RhoG RhoG subfamily. 100.0 1.2E-35 2.7E-40 203.6 18.7 150 15-166 3-165 (191)
21 KOG0079 GTP-binding protein H- 100.0 5.8E-37 1.2E-41 193.6 10.5 152 13-166 6-157 (198)
22 PF00071 Ras: Ras family; Int 100.0 1E-35 2.2E-40 198.8 16.9 149 17-166 1-149 (162)
23 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.8E-35 3.8E-40 199.7 18.0 150 15-166 2-152 (172)
24 cd01865 Rab3 Rab3 subfamily. 100.0 3.5E-35 7.6E-40 197.0 18.9 150 16-166 2-151 (165)
25 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.8E-35 3.9E-40 206.0 17.8 149 15-165 1-162 (222)
26 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.9E-35 6.3E-40 200.2 17.9 150 16-166 1-154 (182)
27 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4.4E-35 9.5E-40 196.6 18.5 151 15-166 2-152 (166)
28 cd01874 Cdc42 Cdc42 subfamily. 100.0 5.1E-35 1.1E-39 197.9 18.8 149 16-166 2-163 (175)
29 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 5.1E-35 1.1E-39 202.0 18.8 150 16-166 1-156 (201)
30 cd01868 Rab11_like Rab11-like. 100.0 1.1E-34 2.5E-39 194.4 18.6 152 14-166 2-153 (165)
31 cd04127 Rab27A Rab27a subfamil 100.0 9.3E-35 2E-39 197.4 18.1 153 13-166 2-165 (180)
32 cd01864 Rab19 Rab19 subfamily. 100.0 1.7E-34 3.7E-39 193.6 18.6 152 14-166 2-154 (165)
33 PLN03071 GTP-binding nuclear p 100.0 1.6E-34 3.5E-39 201.7 19.1 150 13-166 11-160 (219)
34 cd01871 Rac1_like Rac1-like su 100.0 2E-34 4.4E-39 194.8 18.9 150 15-166 1-163 (174)
35 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2.4E-34 5.1E-39 193.8 18.4 150 17-166 2-153 (170)
36 cd01866 Rab2 Rab2 subfamily. 100.0 4E-34 8.7E-39 192.4 19.0 153 13-166 2-154 (168)
37 cd04109 Rab28 Rab28 subfamily. 100.0 2.6E-34 5.7E-39 200.3 18.5 150 16-166 1-154 (215)
38 cd04136 Rap_like Rap-like subf 100.0 2.4E-34 5.1E-39 192.3 17.5 149 16-166 2-151 (163)
39 cd04119 RJL RJL (RabJ-Like) su 100.0 3.2E-34 6.9E-39 192.4 18.0 150 16-166 1-155 (168)
40 PLN03110 Rab GTPase; Provision 100.0 5.2E-34 1.1E-38 198.9 19.2 154 12-166 9-162 (216)
41 KOG0095 GTPase Rab30, small G 100.0 2E-35 4.4E-40 187.1 10.7 154 12-166 4-157 (213)
42 cd04116 Rab9 Rab9 subfamily. 100.0 7.8E-34 1.7E-38 191.2 19.0 153 12-166 2-159 (170)
43 cd04126 Rab20 Rab20 subfamily. 100.0 3.9E-34 8.5E-39 199.1 18.0 146 16-166 1-178 (220)
44 cd04125 RabA_like RabA-like su 100.0 7E-34 1.5E-38 194.5 18.8 150 16-166 1-150 (188)
45 cd04113 Rab4 Rab4 subfamily. 100.0 6.4E-34 1.4E-38 190.0 18.0 150 16-166 1-150 (161)
46 cd04175 Rap1 Rap1 subgroup. T 100.0 5.5E-34 1.2E-38 190.9 17.6 150 15-166 1-151 (164)
47 cd04110 Rab35 Rab35 subfamily. 100.0 9.9E-34 2.1E-38 195.3 19.3 152 13-166 4-155 (199)
48 KOG0091 GTPase Rab39, small G 100.0 2.3E-35 5E-40 189.3 9.9 153 13-166 6-161 (213)
49 cd04106 Rab23_lke Rab23-like s 100.0 7.6E-34 1.7E-38 189.7 17.7 149 16-166 1-151 (162)
50 cd04111 Rab39 Rab39 subfamily. 100.0 8.9E-34 1.9E-38 197.0 18.4 152 14-166 1-154 (211)
51 cd04112 Rab26 Rab26 subfamily. 100.0 8.6E-34 1.9E-38 194.5 18.0 150 16-166 1-151 (191)
52 PLN03108 Rab family protein; P 100.0 1.3E-33 2.9E-38 196.1 19.0 154 12-166 3-156 (210)
53 PTZ00369 Ras-like protein; Pro 100.0 1.3E-33 2.9E-38 193.2 18.5 151 14-166 4-155 (189)
54 cd04176 Rap2 Rap2 subgroup. T 100.0 1.5E-33 3.3E-38 188.6 17.9 150 15-166 1-151 (163)
55 cd04144 Ras2 Ras2 subfamily. 100.0 9E-34 1.9E-38 194.2 16.6 148 17-166 1-151 (190)
56 cd00877 Ran Ran (Ras-related n 100.0 3.3E-33 7.1E-38 187.6 19.0 147 16-166 1-147 (166)
57 cd04134 Rho3 Rho3 subfamily. 100.0 2.4E-33 5.2E-38 192.0 18.4 149 16-166 1-162 (189)
58 cd01873 RhoBTB RhoBTB subfamil 100.0 2.5E-33 5.5E-38 192.3 18.4 149 15-166 2-184 (195)
59 cd04140 ARHI_like ARHI subfami 100.0 2.4E-33 5.3E-38 188.1 17.8 149 16-166 2-153 (165)
60 KOG0088 GTPase Rab21, small G 100.0 5.2E-35 1.1E-39 186.8 9.1 157 9-166 7-163 (218)
61 cd01861 Rab6 Rab6 subfamily. 100.0 3.2E-33 7E-38 186.5 18.3 150 16-166 1-150 (161)
62 cd04142 RRP22 RRP22 subfamily. 100.0 2.9E-33 6.2E-38 192.6 18.1 150 16-166 1-162 (198)
63 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3.5E-33 7.7E-38 188.1 18.2 147 15-162 2-150 (170)
64 smart00175 RAB Rab subfamily o 100.0 4.1E-33 9E-38 186.4 18.1 150 16-166 1-150 (164)
65 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.2E-32 2.5E-37 186.1 19.1 149 16-166 1-162 (173)
66 cd04124 RabL2 RabL2 subfamily. 100.0 8.9E-33 1.9E-37 184.7 18.2 146 16-166 1-146 (161)
67 smart00173 RAS Ras subfamily o 100.0 5.9E-33 1.3E-37 185.9 17.4 149 16-166 1-150 (164)
68 cd04138 H_N_K_Ras_like H-Ras/N 100.0 9.4E-33 2E-37 184.2 17.8 149 15-166 1-150 (162)
69 cd01860 Rab5_related Rab5-rela 100.0 1.2E-32 2.7E-37 184.0 18.4 151 15-166 1-151 (163)
70 KOG0081 GTPase Rab27, small G 100.0 1.6E-35 3.4E-40 189.3 3.9 155 11-166 5-169 (219)
71 cd04103 Centaurin_gamma Centau 100.0 1E-32 2.2E-37 183.7 17.2 144 16-166 1-147 (158)
72 cd04132 Rho4_like Rho4-like su 100.0 9.9E-33 2.2E-37 188.6 17.5 149 16-166 1-155 (187)
73 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.7E-32 3.8E-37 183.4 18.1 150 15-166 2-152 (164)
74 KOG0097 GTPase Rab14, small G 100.0 1.4E-33 3.1E-38 177.4 11.9 156 10-166 6-161 (215)
75 cd04118 Rab24 Rab24 subfamily. 100.0 2.4E-32 5.3E-37 187.5 19.2 150 16-166 1-154 (193)
76 smart00176 RAN Ran (Ras-relate 100.0 1.2E-32 2.6E-37 189.4 17.3 142 21-166 1-142 (200)
77 cd04101 RabL4 RabL4 (Rab-like4 100.0 3.2E-32 7E-37 182.3 17.9 149 16-166 1-152 (164)
78 smart00174 RHO Rho (Ras homolo 100.0 3.5E-32 7.6E-37 183.8 17.6 147 18-166 1-160 (174)
79 cd01863 Rab18 Rab18 subfamily. 100.0 9.1E-32 2E-36 179.6 18.8 149 16-166 1-150 (161)
80 cd04143 Rhes_like Rhes_like su 100.0 3.4E-32 7.5E-37 192.6 17.7 149 16-166 1-159 (247)
81 cd04123 Rab21 Rab21 subfamily. 100.0 8.1E-32 1.8E-36 179.7 18.5 150 16-166 1-150 (162)
82 cd04135 Tc10 TC10 subfamily. 100.0 1.2E-31 2.7E-36 181.1 18.8 149 16-166 1-162 (174)
83 cd01892 Miro2 Miro2 subfamily. 100.0 4.8E-32 1E-36 182.5 16.7 151 13-166 2-154 (169)
84 PLN03118 Rab family protein; P 100.0 1.9E-31 4E-36 185.5 19.6 153 12-166 11-165 (211)
85 cd04177 RSR1 RSR1 subgroup. R 100.0 1.7E-31 3.6E-36 179.6 18.2 150 15-166 1-152 (168)
86 cd04146 RERG_RasL11_like RERG/ 100.0 5.7E-32 1.2E-36 181.4 15.5 148 17-166 1-152 (165)
87 cd04114 Rab30 Rab30 subfamily. 100.0 3.3E-31 7.2E-36 178.2 19.2 153 13-166 5-157 (169)
88 cd01862 Rab7 Rab7 subfamily. 100.0 2.4E-31 5.2E-36 179.2 18.3 150 16-166 1-155 (172)
89 cd04148 RGK RGK subfamily. Th 100.0 2.8E-31 6.1E-36 185.6 17.7 148 16-166 1-151 (221)
90 KOG0083 GTPase Rab26/Rab37, sm 100.0 6E-34 1.3E-38 177.3 3.3 146 20-166 2-148 (192)
91 cd00154 Rab Rab family. Rab G 100.0 5.6E-31 1.2E-35 174.6 17.8 150 16-166 1-150 (159)
92 KOG0393 Ras-related small GTPa 100.0 3.8E-32 8.3E-37 182.4 11.2 152 13-166 2-167 (198)
93 cd01870 RhoA_like RhoA-like su 100.0 1.2E-30 2.5E-35 176.5 18.5 150 15-166 1-163 (175)
94 cd04102 RabL3 RabL3 (Rab-like3 100.0 7.3E-31 1.6E-35 180.5 17.5 148 16-164 1-176 (202)
95 KOG0395 Ras-related GTPase [Ge 100.0 4E-31 8.7E-36 180.7 14.8 151 14-166 2-153 (196)
96 cd00876 Ras Ras family. The R 100.0 3.6E-30 7.9E-35 171.3 16.6 148 17-166 1-149 (160)
97 cd00157 Rho Rho (Ras homology) 100.0 1E-29 2.3E-34 171.0 18.5 149 16-166 1-161 (171)
98 cd04129 Rho2 Rho2 subfamily. 100.0 8.1E-30 1.8E-34 174.2 18.1 150 15-166 1-161 (187)
99 cd04139 RalA_RalB RalA/RalB su 100.0 1.1E-29 2.4E-34 169.7 17.6 149 16-166 1-150 (164)
100 cd04147 Ras_dva Ras-dva subfam 100.0 7.4E-30 1.6E-34 175.9 17.2 149 17-166 1-151 (198)
101 cd04149 Arf6 Arf6 subfamily. 100.0 2.4E-30 5.2E-35 174.0 13.8 145 14-166 8-158 (168)
102 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 6.9E-31 1.5E-35 176.0 10.8 139 18-162 2-144 (164)
103 PLN00023 GTP-binding protein; 100.0 2.7E-29 5.8E-34 181.0 18.2 145 9-153 15-189 (334)
104 PTZ00132 GTP-binding nuclear p 100.0 7.6E-29 1.6E-33 172.9 19.1 152 11-166 5-156 (215)
105 cd04137 RheB Rheb (Ras Homolog 100.0 3.7E-29 8.1E-34 169.9 16.8 149 16-166 2-151 (180)
106 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.7E-29 3.8E-34 168.4 14.3 143 16-166 1-149 (159)
107 cd01893 Miro1 Miro1 subfamily. 100.0 4.5E-29 9.8E-34 167.5 16.3 148 16-166 1-152 (166)
108 PLN00223 ADP-ribosylation fact 100.0 2.4E-29 5.2E-34 171.0 15.1 143 13-166 15-166 (181)
109 cd04154 Arl2 Arl2 subfamily. 100.0 2.1E-29 4.5E-34 170.2 14.6 149 10-166 9-163 (173)
110 smart00177 ARF ARF-like small 100.0 3.9E-29 8.5E-34 169.2 14.9 146 13-166 11-162 (175)
111 cd04158 ARD1 ARD1 subfamily. 100.0 7.4E-29 1.6E-33 166.9 15.1 142 17-166 1-149 (169)
112 cd04157 Arl6 Arl6 subfamily. 100.0 6.7E-29 1.5E-33 165.7 12.7 143 17-166 1-152 (162)
113 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 2E-28 4.4E-33 166.8 15.1 148 15-166 3-158 (183)
114 PTZ00133 ADP-ribosylation fact 100.0 2.8E-28 6.1E-33 165.9 14.6 146 13-166 15-166 (182)
115 cd04156 ARLTS1 ARLTS1 subfamil 100.0 2.3E-28 5E-33 162.9 11.9 143 17-166 1-150 (160)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.1E-27 2.3E-32 162.0 14.5 145 14-166 14-164 (174)
117 cd04161 Arl2l1_Arl13_like Arl2 100.0 6.2E-28 1.3E-32 162.2 12.5 142 17-163 1-148 (167)
118 PTZ00099 rab6; Provisional 100.0 3.4E-27 7.5E-32 159.5 15.8 128 38-166 3-130 (176)
119 KOG4252 GTP-binding protein [S 100.0 6.9E-30 1.5E-34 166.5 0.9 155 10-166 15-169 (246)
120 cd00879 Sar1 Sar1 subfamily. 100.0 4.8E-27 1E-31 160.8 14.9 146 13-166 17-179 (190)
121 cd00878 Arf_Arl Arf (ADP-ribos 100.0 4.9E-27 1.1E-31 156.3 13.6 142 17-166 1-148 (158)
122 cd04151 Arl1 Arl1 subfamily. 100.0 1.1E-27 2.3E-32 159.6 10.1 142 17-166 1-148 (158)
123 KOG0073 GTP-binding ADP-ribosy 100.0 5.5E-27 1.2E-31 150.7 12.8 151 10-165 11-165 (185)
124 PF00025 Arf: ADP-ribosylation 100.0 1.6E-26 3.5E-31 156.3 15.8 147 12-166 11-164 (175)
125 cd04160 Arfrp1 Arfrp1 subfamil 99.9 9.5E-27 2E-31 156.2 14.0 143 17-166 1-157 (167)
126 smart00178 SAR Sar1p-like memb 99.9 8.2E-26 1.8E-30 154.1 14.8 146 13-166 15-173 (184)
127 cd04159 Arl10_like Arl10-like 99.9 9.2E-26 2E-30 149.6 13.4 143 17-166 1-149 (159)
128 TIGR00231 small_GTP small GTP- 99.9 3.6E-25 7.7E-30 146.4 16.0 150 15-166 1-152 (161)
129 cd01890 LepA LepA subfamily. 99.9 3.2E-25 7E-30 150.3 13.9 143 17-166 2-165 (179)
130 cd04155 Arl3 Arl3 subfamily. 99.9 8.2E-25 1.8E-29 147.6 14.9 145 11-166 10-163 (173)
131 cd01897 NOG NOG1 is a nucleola 99.9 7.1E-25 1.5E-29 147.2 14.4 145 16-166 1-156 (168)
132 COG1100 GTPase SAR1 and relate 99.9 1.5E-24 3.2E-29 151.6 15.9 151 16-166 6-173 (219)
133 cd04171 SelB SelB subfamily. 99.9 5.1E-25 1.1E-29 147.1 12.9 143 17-166 2-154 (164)
134 PF08477 Miro: Miro-like prote 99.9 5E-25 1.1E-29 140.1 12.0 114 17-131 1-119 (119)
135 cd01898 Obg Obg subfamily. Th 99.9 1E-24 2.2E-29 146.7 14.0 147 17-166 2-159 (170)
136 cd01891 TypA_BipA TypA (tyrosi 99.9 4.2E-25 9.1E-30 151.8 11.5 147 16-166 3-170 (194)
137 cd01878 HflX HflX subfamily. 99.9 8.8E-25 1.9E-29 151.3 12.5 147 12-166 38-193 (204)
138 PRK12299 obgE GTPase CgtA; Rev 99.9 2.5E-24 5.4E-29 158.1 14.7 150 15-166 158-316 (335)
139 TIGR02528 EutP ethanolamine ut 99.9 8.3E-25 1.8E-29 143.2 9.5 126 17-166 2-133 (142)
140 KOG0070 GTP-binding ADP-ribosy 99.9 1.7E-24 3.6E-29 142.4 10.7 151 11-166 13-166 (181)
141 KOG1673 Ras GTPases [General f 99.9 1.2E-24 2.6E-29 138.9 9.2 155 11-166 16-174 (205)
142 cd00882 Ras_like_GTPase Ras-li 99.9 3.4E-23 7.4E-28 135.7 14.9 146 20-166 1-148 (157)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.1E-23 4.6E-28 139.9 12.5 146 17-166 2-154 (168)
144 cd01879 FeoB Ferrous iron tran 99.9 3.7E-23 8.1E-28 137.3 13.1 137 20-166 1-145 (158)
145 TIGR03156 GTP_HflX GTP-binding 99.9 2.7E-23 5.8E-28 153.8 13.5 145 13-166 187-340 (351)
146 TIGR02729 Obg_CgtA Obg family 99.9 4.5E-23 9.7E-28 151.4 14.3 149 15-166 157-317 (329)
147 KOG0075 GTP-binding ADP-ribosy 99.9 2.8E-24 6.1E-29 136.0 5.4 148 15-166 20-170 (186)
148 TIGR03598 GTPase_YsxC ribosome 99.9 8E-23 1.7E-27 138.8 12.7 149 11-166 14-178 (179)
149 PRK04213 GTP-binding protein; 99.9 1.3E-23 2.7E-28 145.2 8.3 140 13-166 7-180 (201)
150 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3.4E-22 7.3E-27 151.8 15.4 137 13-163 201-346 (442)
151 cd01881 Obg_like The Obg-like 99.9 1E-22 2.3E-27 137.4 11.0 144 20-166 1-165 (176)
152 PF02421 FeoB_N: Ferrous iron 99.9 4.1E-23 8.9E-28 135.6 8.5 141 16-166 1-149 (156)
153 PRK12297 obgE GTPase CgtA; Rev 99.9 1.5E-21 3.2E-26 146.9 17.2 144 17-166 160-315 (424)
154 cd04164 trmE TrmE (MnmE, ThdF, 99.9 5.3E-22 1.2E-26 131.4 13.3 135 16-166 2-145 (157)
155 TIGR00487 IF-2 translation ini 99.9 1.6E-21 3.4E-26 152.2 16.5 143 12-166 84-238 (587)
156 cd01889 SelB_euk SelB subfamil 99.9 4.3E-22 9.3E-27 136.6 11.2 147 16-166 1-174 (192)
157 PRK15494 era GTPase Era; Provi 99.9 1.9E-21 4E-26 143.7 15.2 144 12-166 49-204 (339)
158 TIGR01393 lepA GTP-binding pro 99.9 1.1E-21 2.4E-26 153.6 14.6 146 14-166 2-168 (595)
159 TIGR00436 era GTP-binding prot 99.9 1.4E-21 3.1E-26 140.5 13.5 141 17-166 2-152 (270)
160 cd00881 GTP_translation_factor 99.9 9.1E-22 2E-26 134.2 11.9 144 17-166 1-175 (189)
161 TIGR00475 selB selenocysteine- 99.9 1.6E-21 3.6E-26 152.6 14.5 142 16-166 1-154 (581)
162 PRK03003 GTP-binding protein D 99.9 8.2E-22 1.8E-26 151.5 12.4 148 13-166 209-370 (472)
163 cd04105 SR_beta Signal recogni 99.9 1.4E-21 3E-26 135.0 12.0 117 17-134 2-123 (203)
164 PRK05291 trmE tRNA modificatio 99.9 1.3E-21 2.9E-26 149.2 13.0 136 14-166 214-358 (449)
165 PRK11058 GTPase HflX; Provisio 99.9 2.3E-21 4.9E-26 146.6 14.0 145 15-166 197-350 (426)
166 cd01895 EngA2 EngA2 subfamily. 99.9 5.8E-21 1.3E-25 128.3 14.6 145 15-166 2-163 (174)
167 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 1.3E-21 2.8E-26 128.9 10.3 149 13-165 8-156 (216)
168 KOG0074 GTP-binding ADP-ribosy 99.9 2.9E-21 6.3E-26 121.7 11.3 146 11-166 13-167 (185)
169 PRK05306 infB translation init 99.9 4.9E-21 1.1E-25 152.9 15.3 146 12-166 287-440 (787)
170 KOG0071 GTP-binding ADP-ribosy 99.9 1.8E-21 3.8E-26 122.5 10.1 144 14-165 16-165 (180)
171 PRK03003 GTP-binding protein D 99.9 7.9E-21 1.7E-25 146.1 15.1 142 14-166 37-187 (472)
172 KOG0076 GTP-binding ADP-ribosy 99.9 2.8E-22 6E-27 130.3 5.8 152 13-166 15-175 (197)
173 PRK12296 obgE GTPase CgtA; Rev 99.9 4.9E-21 1.1E-25 146.0 13.4 149 14-166 158-328 (500)
174 CHL00189 infB translation init 99.9 3.1E-21 6.8E-26 152.9 12.7 148 12-166 241-398 (742)
175 KOG3883 Ras family small GTPas 99.9 4.1E-20 8.9E-25 118.0 14.3 150 13-164 7-161 (198)
176 cd01894 EngA1 EngA1 subfamily. 99.9 7.5E-21 1.6E-25 126.0 11.4 136 19-166 1-146 (157)
177 PRK15467 ethanolamine utilizat 99.9 7.6E-21 1.6E-25 126.5 11.1 127 17-166 3-135 (158)
178 TIGR03594 GTPase_EngA ribosome 99.9 4.5E-20 9.8E-25 140.8 16.6 146 13-166 170-332 (429)
179 TIGR00483 EF-1_alpha translati 99.9 6.9E-21 1.5E-25 144.9 11.9 152 12-166 4-195 (426)
180 PRK00454 engB GTP-binding prot 99.9 1.5E-20 3.2E-25 129.2 11.9 149 11-166 20-182 (196)
181 TIGR00437 feoB ferrous iron tr 99.8 2.1E-20 4.6E-25 146.5 13.1 135 22-166 1-143 (591)
182 PRK12317 elongation factor 1-a 99.8 3.5E-20 7.6E-25 141.1 13.9 151 12-166 3-193 (425)
183 cd01888 eIF2_gamma eIF2-gamma 99.8 1.6E-20 3.4E-25 129.9 10.5 149 16-166 1-187 (203)
184 PRK12298 obgE GTPase CgtA; Rev 99.8 6.3E-20 1.4E-24 137.4 14.2 147 17-166 161-321 (390)
185 PRK00093 GTP-binding protein D 99.8 6.9E-20 1.5E-24 140.0 14.2 137 16-166 2-150 (435)
186 PRK05433 GTP-binding protein L 99.8 7.2E-20 1.6E-24 143.7 13.8 147 13-166 5-172 (600)
187 cd04163 Era Era subfamily. Er 99.8 1.4E-19 3E-24 120.7 13.0 146 15-166 3-157 (168)
188 cd04166 CysN_ATPS CysN_ATPS su 99.8 1E-19 2.2E-24 126.3 12.5 145 17-166 1-182 (208)
189 PRK09554 feoB ferrous iron tra 99.8 2.8E-19 6E-24 143.4 16.7 142 15-166 3-156 (772)
190 PF00009 GTP_EFTU: Elongation 99.8 1.9E-20 4.2E-25 128.0 8.2 149 14-166 2-175 (188)
191 PRK00089 era GTPase Era; Revie 99.8 1.2E-19 2.6E-24 132.0 12.8 145 15-166 5-159 (292)
192 cd00880 Era_like Era (E. coli 99.8 1.4E-19 3E-24 119.6 11.2 142 20-166 1-152 (163)
193 KOG4423 GTP-binding protein-li 99.8 1.1E-22 2.5E-27 133.6 -3.6 156 11-166 21-182 (229)
194 cd01883 EF1_alpha Eukaryotic e 99.8 1.2E-19 2.5E-24 126.9 10.8 146 17-166 1-193 (219)
195 PRK10218 GTP-binding protein; 99.8 8.4E-19 1.8E-23 137.3 15.1 148 14-165 4-172 (607)
196 TIGR03594 GTPase_EngA ribosome 99.8 5.8E-19 1.3E-23 134.7 13.6 138 17-166 1-148 (429)
197 KOG1707 Predicted Ras related/ 99.8 8.3E-20 1.8E-24 138.2 8.5 154 11-166 5-163 (625)
198 cd01896 DRG The developmentall 99.8 1.7E-18 3.8E-23 121.9 14.5 140 17-166 2-214 (233)
199 PRK00093 GTP-binding protein D 99.8 5.3E-19 1.1E-23 135.1 12.8 146 13-166 171-332 (435)
200 TIGR00491 aIF-2 translation in 99.8 8E-19 1.7E-23 137.1 13.3 112 15-133 4-134 (590)
201 PRK09518 bifunctional cytidyla 99.8 6.2E-19 1.3E-23 141.4 12.9 144 14-166 449-609 (712)
202 COG2229 Predicted GTPase [Gene 99.8 8.9E-19 1.9E-23 115.4 11.3 145 12-165 7-165 (187)
203 COG1159 Era GTPase [General fu 99.8 8.5E-19 1.8E-23 123.9 11.1 146 14-166 5-160 (298)
204 PRK09518 bifunctional cytidyla 99.8 6.4E-18 1.4E-22 135.6 16.7 144 11-166 271-424 (712)
205 cd01884 EF_Tu EF-Tu subfamily. 99.8 2.8E-18 6.1E-23 117.7 12.6 145 15-165 2-170 (195)
206 TIGR01394 TypA_BipA GTP-bindin 99.8 9.5E-19 2.1E-23 137.1 11.3 143 16-164 2-167 (594)
207 PRK10512 selenocysteinyl-tRNA- 99.8 3.1E-18 6.7E-23 134.8 14.0 142 17-166 2-154 (614)
208 PRK04004 translation initiatio 99.8 3.5E-18 7.6E-23 133.8 13.0 114 13-133 4-136 (586)
209 cd01850 CDC_Septin CDC/Septin. 99.8 5.2E-18 1.1E-22 122.1 12.5 142 14-160 3-184 (276)
210 cd01876 YihA_EngB The YihA (En 99.8 3.9E-18 8.4E-23 114.0 11.1 141 17-166 1-159 (170)
211 TIGR03680 eif2g_arch translati 99.8 1.8E-18 3.9E-23 130.8 10.5 152 13-166 2-184 (406)
212 PRK04000 translation initiatio 99.8 3.1E-18 6.6E-23 129.6 10.9 150 11-166 5-189 (411)
213 KOG0072 GTP-binding ADP-ribosy 99.8 7E-19 1.5E-23 111.3 5.5 150 12-166 15-167 (182)
214 PLN00043 elongation factor 1-a 99.8 1.2E-17 2.6E-22 127.3 12.5 149 12-166 4-201 (447)
215 KOG1489 Predicted GTP-binding 99.8 1.8E-17 3.9E-22 117.8 12.2 148 14-166 195-355 (366)
216 TIGR00485 EF-Tu translation el 99.8 1.5E-17 3.2E-22 125.5 12.2 147 12-164 9-179 (394)
217 PRK12735 elongation factor Tu; 99.8 2.3E-17 4.9E-22 124.5 13.2 149 11-165 8-180 (396)
218 COG2262 HflX GTPases [General 99.8 1.4E-17 3.1E-22 122.1 11.4 155 4-166 181-344 (411)
219 cd01885 EF2 EF2 (for archaea a 99.8 1.7E-17 3.8E-22 115.7 11.3 120 17-140 2-145 (222)
220 cd04168 TetM_like Tet(M)-like 99.8 1.9E-17 4.1E-22 116.8 11.6 129 17-154 1-147 (237)
221 PRK12736 elongation factor Tu; 99.7 3.7E-17 8E-22 123.3 13.1 147 12-164 9-179 (394)
222 cd04167 Snu114p Snu114p subfam 99.7 5.9E-17 1.3E-21 112.9 12.5 113 17-133 2-136 (213)
223 PF10662 PduV-EutP: Ethanolami 99.7 2E-17 4.3E-22 106.5 9.2 127 17-166 3-134 (143)
224 PLN03126 Elongation factor Tu; 99.7 4.6E-17 9.9E-22 124.8 12.4 149 11-165 77-249 (478)
225 COG0370 FeoB Fe2+ transport sy 99.7 9E-17 1.9E-21 124.5 12.8 141 15-165 3-151 (653)
226 CHL00071 tufA elongation facto 99.7 1.1E-16 2.3E-21 121.4 13.1 148 12-165 9-180 (409)
227 KOG0077 Vesicle coat complex C 99.7 3.9E-17 8.4E-22 105.8 9.1 118 14-136 19-137 (193)
228 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 7.1E-17 1.5E-21 112.7 11.1 143 17-161 1-160 (232)
229 COG0486 ThdF Predicted GTPase 99.7 8.6E-17 1.9E-21 119.9 11.9 142 12-166 214-364 (454)
230 PF09439 SRPRB: Signal recogni 99.7 1E-17 2.3E-22 112.3 6.4 117 15-135 3-127 (181)
231 cd01886 EF-G Elongation factor 99.7 1.2E-16 2.6E-21 114.6 12.3 112 17-134 1-130 (270)
232 cd04169 RF3 RF3 subfamily. Pe 99.7 3.1E-16 6.8E-21 112.4 14.2 133 15-156 2-156 (267)
233 PRK05124 cysN sulfate adenylyl 99.7 8.8E-17 1.9E-21 123.5 11.8 150 12-166 24-213 (474)
234 KOG1423 Ras-like GTPase ERA [C 99.7 3.8E-16 8.2E-21 110.7 12.9 125 5-133 62-198 (379)
235 KOG0462 Elongation factor-type 99.7 2.2E-16 4.9E-21 119.2 12.3 152 11-166 56-223 (650)
236 PTZ00141 elongation factor 1- 99.7 3.6E-16 7.7E-21 119.4 13.3 150 12-166 4-201 (446)
237 TIGR02034 CysN sulfate adenyly 99.7 1.3E-16 2.9E-21 120.7 10.6 146 16-166 1-185 (406)
238 cd04170 EF-G_bact Elongation f 99.7 8.3E-16 1.8E-20 110.6 14.2 140 17-165 1-160 (268)
239 KOG1145 Mitochondrial translat 99.7 3.5E-16 7.7E-21 118.2 11.5 155 4-166 142-304 (683)
240 COG0532 InfB Translation initi 99.7 5.4E-16 1.2E-20 117.2 12.1 146 14-166 4-158 (509)
241 cd04165 GTPBP1_like GTPBP1-lik 99.7 1.5E-15 3.2E-20 106.4 13.4 144 17-166 1-211 (224)
242 PF01926 MMR_HSR1: 50S ribosom 99.7 1.2E-15 2.6E-20 96.5 11.3 106 17-129 1-116 (116)
243 PRK00049 elongation factor Tu; 99.7 1.5E-15 3.3E-20 114.6 13.8 148 12-165 9-180 (396)
244 COG1160 Predicted GTPases [Gen 99.7 5.7E-16 1.2E-20 115.3 11.2 137 16-166 4-153 (444)
245 COG1160 Predicted GTPases [Gen 99.7 2.9E-15 6.3E-20 111.6 14.7 146 14-166 177-339 (444)
246 COG1084 Predicted GTPase [Gene 99.7 1.3E-15 2.8E-20 109.0 12.1 121 9-133 162-293 (346)
247 PRK05506 bifunctional sulfate 99.7 4.9E-16 1.1E-20 123.5 10.9 150 12-166 21-209 (632)
248 COG0481 LepA Membrane GTPase L 99.7 9.7E-16 2.1E-20 114.2 11.4 149 11-166 5-174 (603)
249 COG0218 Predicted GTPase [Gene 99.7 1.2E-15 2.6E-20 102.7 10.8 145 10-165 19-184 (200)
250 PRK00741 prfC peptide chain re 99.7 3.9E-15 8.6E-20 115.5 13.6 136 11-155 6-163 (526)
251 TIGR00484 EF-G translation elo 99.7 2.1E-15 4.6E-20 120.9 12.4 143 12-163 7-171 (689)
252 PRK13351 elongation factor G; 99.6 1.2E-15 2.6E-20 122.4 10.1 133 12-153 5-155 (687)
253 cd01899 Ygr210 Ygr210 subfamil 99.6 4E-15 8.6E-20 108.8 11.7 82 18-99 1-111 (318)
254 smart00010 small_GTPase Small 99.6 3.8E-16 8.2E-21 99.5 5.2 113 16-166 1-114 (124)
255 COG0536 Obg Predicted GTPase [ 99.6 3.9E-15 8.4E-20 107.1 10.3 148 17-166 161-321 (369)
256 PLN03127 Elongation factor Tu; 99.6 1.3E-14 2.8E-19 110.8 13.3 145 12-162 58-226 (447)
257 TIGR00503 prfC peptide chain r 99.6 4.8E-15 1E-19 115.0 11.1 120 10-133 6-145 (527)
258 cd04104 p47_IIGP_like p47 (47- 99.6 7.8E-15 1.7E-19 101.0 10.8 110 15-132 1-119 (197)
259 COG5256 TEF1 Translation elong 99.6 7.5E-15 1.6E-19 108.0 11.0 151 12-166 4-199 (428)
260 KOG3905 Dynein light intermedi 99.6 1.8E-14 3.8E-19 103.2 11.5 155 9-166 46-278 (473)
261 COG1163 DRG Predicted GTPase [ 99.6 5.5E-14 1.2E-18 100.6 14.0 95 11-107 59-161 (365)
262 PTZ00327 eukaryotic translatio 99.6 5.7E-15 1.2E-19 112.7 9.2 154 11-166 30-221 (460)
263 TIGR00490 aEF-2 translation el 99.6 1.4E-14 3.1E-19 116.5 10.8 123 12-138 16-156 (720)
264 PRK12739 elongation factor G; 99.6 2.3E-14 4.9E-19 115.0 11.6 118 12-135 5-140 (691)
265 PRK09602 translation-associate 99.6 1.4E-13 3.1E-18 103.5 13.7 83 16-98 2-113 (396)
266 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 1.4E-13 2.9E-18 94.8 12.1 142 16-161 1-162 (196)
267 KOG1707 Predicted Ras related/ 99.5 2.4E-13 5.2E-18 103.7 13.9 148 9-161 419-567 (625)
268 COG2895 CysN GTPases - Sulfate 99.5 9.2E-14 2E-18 100.4 10.6 150 12-166 3-191 (431)
269 PRK00007 elongation factor G; 99.5 9.2E-14 2E-18 111.5 11.7 144 11-163 6-171 (693)
270 KOG1490 GTP-binding protein CR 99.5 3.5E-14 7.6E-19 106.6 7.3 157 7-166 160-329 (620)
271 cd00066 G-alpha G protein alph 99.5 1.6E-13 3.5E-18 100.8 10.5 70 63-132 160-240 (317)
272 KOG0090 Signal recognition par 99.5 6.5E-14 1.4E-18 94.6 7.6 113 16-133 39-158 (238)
273 PTZ00258 GTP-binding protein; 99.5 5.7E-13 1.2E-17 99.5 13.2 89 10-98 16-126 (390)
274 cd01853 Toc34_like Toc34-like 99.5 5.4E-13 1.2E-17 94.7 12.4 123 9-133 25-162 (249)
275 COG3596 Predicted GTPase [Gene 99.5 3.8E-14 8.2E-19 99.5 5.4 118 12-133 36-161 (296)
276 smart00275 G_alpha G protein a 99.5 3.3E-13 7.2E-18 99.9 10.4 69 64-132 184-263 (342)
277 PF05783 DLIC: Dynein light in 99.5 1.6E-12 3.5E-17 99.3 13.8 151 12-165 22-251 (472)
278 PRK14845 translation initiatio 99.5 8.2E-13 1.8E-17 108.6 12.5 100 27-133 473-591 (1049)
279 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.4E-12 5.2E-17 93.1 13.4 123 9-133 32-166 (313)
280 PRK09866 hypothetical protein; 99.5 3.7E-12 7.9E-17 99.3 14.7 100 64-166 230-341 (741)
281 PRK09601 GTP-binding protein Y 99.5 5.1E-12 1.1E-16 93.5 14.2 83 16-98 3-107 (364)
282 KOG1191 Mitochondrial GTPase [ 99.4 4.5E-13 9.8E-18 100.5 8.6 152 12-165 265-437 (531)
283 PLN00116 translation elongatio 99.4 9.8E-13 2.1E-17 107.5 11.0 120 10-133 14-163 (843)
284 PRK12740 elongation factor G; 99.4 2E-12 4.4E-17 103.8 12.4 124 21-153 1-142 (668)
285 TIGR00157 ribosome small subun 99.4 8.4E-13 1.8E-17 93.7 8.6 87 75-166 24-111 (245)
286 PTZ00416 elongation factor 2; 99.4 1.5E-12 3.3E-17 106.3 10.7 118 12-133 16-157 (836)
287 PRK07560 elongation factor EF- 99.4 1.4E-12 3.1E-17 105.3 9.8 121 11-135 16-154 (731)
288 PF00735 Septin: Septin; Inte 99.4 4.3E-12 9.3E-17 91.6 11.0 139 14-156 3-179 (281)
289 KOG0458 Elongation factor 1 al 99.4 2.7E-11 5.8E-16 92.7 12.8 154 10-166 172-370 (603)
290 COG1217 TypA Predicted membran 99.3 1.9E-11 4.1E-16 91.5 11.0 141 14-163 4-170 (603)
291 cd01882 BMS1 Bms1. Bms1 is an 99.3 3.8E-11 8.3E-16 84.3 12.1 141 12-164 36-182 (225)
292 COG0012 Predicted GTPase, prob 99.3 4.2E-11 9.1E-16 87.8 12.4 84 15-98 2-108 (372)
293 PF04548 AIG1: AIG1 family; I 99.3 1.2E-11 2.6E-16 86.1 8.5 142 16-161 1-163 (212)
294 KOG0461 Selenocysteine-specifi 99.3 4.7E-11 1E-15 86.6 11.6 145 15-163 7-174 (522)
295 PF00350 Dynamin_N: Dynamin fa 99.3 2.7E-11 5.8E-16 81.2 9.9 62 66-130 103-168 (168)
296 KOG3886 GTP-binding protein [S 99.3 2.3E-12 4.9E-17 88.4 4.3 145 14-160 3-161 (295)
297 COG0480 FusA Translation elong 99.3 5.2E-11 1.1E-15 94.8 10.6 132 12-148 7-156 (697)
298 KOG0705 GTPase-activating prot 99.3 8E-12 1.7E-16 95.0 5.4 147 13-166 28-177 (749)
299 KOG0082 G-protein alpha subuni 99.3 5.2E-11 1.1E-15 87.3 9.4 80 52-133 185-275 (354)
300 TIGR00101 ureG urease accessor 99.3 1E-10 2.2E-15 80.6 10.4 90 65-166 93-184 (199)
301 COG4917 EutP Ethanolamine util 99.3 1.3E-11 2.8E-16 76.8 5.1 127 17-166 3-134 (148)
302 PRK13768 GTPase; Provisional 99.2 3.6E-11 7.8E-16 85.8 7.9 70 65-134 98-176 (253)
303 PF05049 IIGP: Interferon-indu 99.2 5.6E-12 1.2E-16 93.4 3.7 113 13-132 33-153 (376)
304 TIGR00073 hypB hydrogenase acc 99.2 6.6E-11 1.4E-15 82.1 7.7 147 7-166 14-195 (207)
305 TIGR02836 spore_IV_A stage IV 99.2 8.7E-10 1.9E-14 82.4 13.2 146 10-161 12-218 (492)
306 KOG0468 U5 snRNP-specific prot 99.2 1.9E-10 4E-15 89.5 9.5 118 11-132 124-261 (971)
307 COG5019 CDC3 Septin family pro 99.2 3.7E-10 8E-15 82.5 10.3 140 12-156 20-199 (373)
308 TIGR00993 3a0901s04IAP86 chlor 99.2 7.2E-10 1.6E-14 87.0 12.5 123 10-134 113-250 (763)
309 KOG1547 Septin CDC10 and relat 99.2 1.1E-10 2.4E-15 80.7 7.2 143 10-157 41-222 (336)
310 KOG1532 GTPase XAB1, interacts 99.1 2.7E-10 6E-15 80.3 8.3 28 10-37 14-41 (366)
311 cd01900 YchF YchF subfamily. 99.1 9.3E-11 2E-15 84.2 6.1 81 18-98 1-103 (274)
312 COG4108 PrfC Peptide chain rel 99.1 6E-10 1.3E-14 83.1 9.6 141 11-160 8-170 (528)
313 KOG1144 Translation initiation 99.1 6.1E-10 1.3E-14 87.6 9.5 115 12-133 472-605 (1064)
314 COG5257 GCD11 Translation init 99.1 2.1E-10 4.6E-15 82.4 6.3 152 13-166 8-190 (415)
315 PF03029 ATP_bind_1: Conserved 99.1 8.9E-12 1.9E-16 88.0 -1.0 70 65-134 92-170 (238)
316 KOG2655 Septin family protein 99.1 1.1E-09 2.5E-14 80.4 9.7 118 10-132 16-170 (366)
317 KOG0410 Predicted GTP binding 99.1 5.5E-11 1.2E-15 85.4 2.7 123 8-132 171-306 (410)
318 PF00503 G-alpha: G-protein al 99.1 1.1E-09 2.4E-14 82.9 9.7 69 64-132 236-315 (389)
319 smart00053 DYNc Dynamin, GTPas 99.1 2E-09 4.4E-14 75.9 10.0 67 65-134 126-206 (240)
320 KOG1486 GTP-binding protein DR 99.1 1.7E-08 3.6E-13 70.7 14.1 89 12-102 59-154 (364)
321 COG0050 TufB GTPases - transla 99.0 3E-09 6.5E-14 75.8 9.6 142 11-161 8-176 (394)
322 PRK09435 membrane ATPase/prote 99.0 5E-09 1.1E-13 77.2 10.4 92 64-166 149-248 (332)
323 TIGR00750 lao LAO/AO transport 99.0 1.9E-09 4.2E-14 78.8 7.3 92 64-166 127-226 (300)
324 COG5258 GTPBP1 GTPase [General 99.0 6.1E-09 1.3E-13 76.8 8.8 155 7-165 109-326 (527)
325 COG3276 SelB Selenocysteine-sp 98.9 1.8E-08 3.8E-13 75.4 10.4 140 17-166 2-150 (447)
326 KOG1954 Endocytosis/signaling 98.9 2E-08 4.4E-13 73.7 9.6 116 14-134 57-225 (532)
327 COG0378 HypB Ni2+-binding GTPa 98.9 1.1E-08 2.3E-13 69.0 7.3 138 15-166 13-189 (202)
328 TIGR00092 GTP-binding protein 98.9 7.5E-09 1.6E-13 77.0 7.1 84 16-99 3-109 (368)
329 KOG3887 Predicted small GTPase 98.9 9.6E-09 2.1E-13 71.4 7.0 119 16-138 28-153 (347)
330 PRK12289 GTPase RsgA; Reviewed 98.9 3.5E-08 7.5E-13 73.5 10.3 83 78-166 80-163 (352)
331 KOG1491 Predicted GTP-binding 98.8 8.5E-09 1.8E-13 74.8 6.2 88 12-99 17-126 (391)
332 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.3E-08 2.9E-13 66.3 6.2 54 17-74 85-138 (141)
333 cd01854 YjeQ_engC YjeQ/EngC. 98.8 2.1E-08 4.6E-13 72.9 7.8 80 81-166 72-152 (287)
334 PRK00098 GTPase RsgA; Reviewed 98.8 2.7E-08 5.9E-13 72.7 7.8 78 84-166 77-155 (298)
335 KOG0460 Mitochondrial translat 98.8 7.5E-08 1.6E-12 70.1 9.1 143 11-161 50-218 (449)
336 KOG0099 G protein subunit Galp 98.8 2.7E-08 5.8E-13 70.0 6.2 72 62-133 200-282 (379)
337 cd01855 YqeH YqeH. YqeH is an 98.7 2.7E-08 5.8E-13 68.2 6.0 82 77-166 24-113 (190)
338 PRK12288 GTPase RsgA; Reviewed 98.7 6.2E-08 1.3E-12 72.1 8.1 79 85-166 118-196 (347)
339 TIGR03348 VI_IcmF type VI secr 98.7 7.5E-08 1.6E-12 81.8 8.8 112 18-133 114-256 (1169)
340 KOG0467 Translation elongation 98.7 9.7E-08 2.1E-12 75.6 8.3 119 10-132 4-136 (887)
341 cd04178 Nucleostemin_like Nucl 98.7 8.6E-08 1.9E-12 64.6 6.9 56 13-73 115-171 (172)
342 cd01856 YlqF YlqF. Proteins o 98.7 8.9E-08 1.9E-12 64.5 7.0 59 12-74 112-170 (171)
343 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 8.8E-08 1.9E-12 62.5 6.4 76 83-165 7-84 (141)
344 cd01858 NGP_1 NGP-1. Autoanti 98.7 1.3E-07 2.8E-12 62.8 7.0 55 14-73 101-156 (157)
345 KOG2486 Predicted GTPase [Gene 98.6 1.3E-07 2.8E-12 67.1 6.9 145 12-165 133-303 (320)
346 PRK10463 hydrogenase nickel in 98.6 1.5E-07 3.2E-12 68.0 7.4 46 120-166 230-277 (290)
347 KOG0448 Mitofusin 1 GTPase, in 98.6 9.8E-07 2.1E-11 69.4 12.2 146 13-163 107-311 (749)
348 TIGR03597 GTPase_YqeH ribosome 98.6 7.1E-08 1.5E-12 72.3 5.6 85 74-166 50-141 (360)
349 KOG1143 Predicted translation 98.6 5.1E-07 1.1E-11 66.7 9.6 148 12-165 164-375 (591)
350 cd01859 MJ1464 MJ1464. This f 98.6 2.1E-07 4.6E-12 61.7 7.1 56 14-73 100-155 (156)
351 COG5192 BMS1 GTP-binding prote 98.6 6.1E-07 1.3E-11 69.6 10.3 141 9-162 63-210 (1077)
352 cd01851 GBP Guanylate-binding 98.6 1.8E-06 3.8E-11 60.7 11.9 88 12-100 4-104 (224)
353 KOG3859 Septins (P-loop GTPase 98.6 2E-07 4.3E-12 66.2 6.3 63 11-73 38-104 (406)
354 cd01859 MJ1464 MJ1464. This f 98.6 9.1E-08 2E-12 63.4 4.4 81 79-166 4-84 (156)
355 TIGR03596 GTPase_YlqF ribosome 98.6 3.1E-07 6.7E-12 66.6 7.3 57 13-74 116-173 (276)
356 PRK09563 rbgA GTPase YlqF; Rev 98.6 4E-07 8.6E-12 66.3 7.9 57 13-74 119-176 (287)
357 cd01855 YqeH YqeH. YqeH is an 98.6 1.9E-07 4.1E-12 63.9 5.8 54 15-73 127-189 (190)
358 KOG0464 Elongation factor G [T 98.5 4.7E-08 1E-12 73.0 2.1 127 12-142 34-176 (753)
359 KOG0463 GTP-binding protein GP 98.5 2.1E-07 4.5E-12 68.8 5.3 114 12-133 130-286 (641)
360 KOG0085 G protein subunit Galp 98.5 1.3E-08 2.9E-13 70.4 -1.0 72 63-134 198-280 (359)
361 COG1161 Predicted GTPases [Gen 98.5 3.9E-07 8.5E-12 67.3 6.6 56 13-73 130-186 (322)
362 PRK10416 signal recognition pa 98.4 2.9E-06 6.3E-11 62.6 9.5 138 14-165 113-297 (318)
363 cd01849 YlqF_related_GTPase Yl 98.4 8.8E-07 1.9E-11 58.7 6.1 56 13-73 98-154 (155)
364 cd03112 CobW_like The function 98.4 2E-06 4.3E-11 57.2 6.8 21 18-38 3-23 (158)
365 cd01858 NGP_1 NGP-1. Autoanti 98.4 1E-06 2.2E-11 58.5 5.4 77 84-166 5-83 (157)
366 PF03308 ArgK: ArgK protein; 98.3 3E-07 6.5E-12 65.0 2.0 141 13-166 27-218 (266)
367 TIGR00064 ftsY signal recognit 98.3 4.6E-06 9.9E-11 60.3 7.6 84 64-159 155-251 (272)
368 cd01849 YlqF_related_GTPase Yl 98.3 3.5E-06 7.6E-11 55.8 6.4 73 89-166 1-73 (155)
369 PF03193 DUF258: Protein of un 98.2 1.3E-06 2.9E-11 57.8 3.9 24 16-39 36-59 (161)
370 COG3523 IcmF Type VI protein s 98.2 1.9E-06 4.2E-11 72.4 5.5 112 18-133 128-269 (1188)
371 PRK14974 cell division protein 98.2 4.6E-06 9.9E-11 61.9 6.6 89 64-166 223-318 (336)
372 PRK12288 GTPase RsgA; Reviewed 98.2 4.7E-06 1E-10 62.2 6.2 23 18-40 208-230 (347)
373 COG1618 Predicted nucleotide k 98.2 3.5E-05 7.6E-10 50.7 9.4 57 13-72 3-59 (179)
374 cd01856 YlqF YlqF. Proteins o 98.2 2.1E-06 4.5E-11 57.8 3.9 78 80-166 12-89 (171)
375 PF09547 Spore_IV_A: Stage IV 98.2 0.00013 2.9E-09 55.2 13.2 145 11-161 13-218 (492)
376 TIGR03597 GTPase_YqeH ribosome 98.2 6.2E-06 1.3E-10 62.0 6.3 55 16-75 155-215 (360)
377 KOG0447 Dynamin-like GTP bindi 98.2 4E-05 8.6E-10 59.6 10.6 81 65-149 413-507 (980)
378 TIGR01425 SRP54_euk signal rec 98.1 5.2E-05 1.1E-09 57.9 10.8 87 63-160 182-274 (429)
379 PRK13796 GTPase YqeH; Provisio 98.1 6.6E-06 1.4E-10 61.9 5.5 54 16-74 161-220 (365)
380 TIGR00157 ribosome small subun 98.1 8E-06 1.7E-10 58.2 5.6 23 17-39 122-144 (245)
381 PRK14722 flhF flagellar biosyn 98.1 7.1E-05 1.5E-09 56.3 10.7 142 14-160 136-316 (374)
382 PRK12289 GTPase RsgA; Reviewed 98.1 7.4E-06 1.6E-10 61.2 5.4 22 18-39 175-196 (352)
383 KOG0469 Elongation factor 2 [T 98.1 3.8E-05 8.3E-10 59.1 8.8 134 12-149 16-179 (842)
384 COG1703 ArgK Putative periplas 98.1 3.5E-05 7.5E-10 55.6 8.1 91 65-166 145-242 (323)
385 PRK13796 GTPase YqeH; Provisio 98.0 1.5E-05 3.2E-10 60.1 6.2 73 86-166 67-147 (365)
386 TIGR03596 GTPase_YlqF ribosome 98.0 8.1E-06 1.8E-10 59.2 4.5 77 81-166 15-91 (276)
387 KOG0459 Polypeptide release fa 98.0 2.6E-05 5.6E-10 58.3 7.0 153 10-166 74-274 (501)
388 cd03115 SRP The signal recogni 98.0 9.7E-05 2.1E-09 49.7 9.1 82 64-156 83-170 (173)
389 PRK01889 GTPase RsgA; Reviewed 98.0 3.1E-05 6.6E-10 58.2 7.3 77 84-166 109-185 (356)
390 PF06858 NOG1: Nucleolar GTP-b 98.0 3.8E-05 8.2E-10 41.6 5.6 43 88-131 14-58 (58)
391 KOG4273 Uncharacterized conser 98.0 0.00014 3.1E-09 51.3 9.9 112 15-132 4-121 (418)
392 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.1E-05 2.5E-10 58.8 4.2 25 16-40 162-186 (287)
393 PF03266 NTPase_1: NTPase; In 97.9 1.8E-05 4E-10 53.1 4.8 131 17-163 1-160 (168)
394 PRK00098 GTPase RsgA; Reviewed 97.9 2.8E-05 6.1E-10 57.0 6.1 25 16-40 165-189 (298)
395 COG1162 Predicted GTPases [Gen 97.9 2.7E-05 5.8E-10 56.5 5.4 22 17-38 166-187 (301)
396 PF00448 SRP54: SRP54-type pro 97.9 0.00016 3.5E-09 49.8 9.0 85 64-160 84-175 (196)
397 PRK12727 flagellar biosynthesi 97.9 0.00017 3.8E-09 56.4 10.0 136 14-160 349-519 (559)
398 KOG0465 Mitochondrial elongati 97.9 1.9E-05 4.2E-10 61.7 4.8 117 12-132 36-168 (721)
399 PRK09563 rbgA GTPase YlqF; Rev 97.9 1.4E-05 3E-10 58.3 3.9 87 71-166 7-94 (287)
400 KOG1424 Predicted GTP-binding 97.9 3E-05 6.6E-10 59.5 5.5 54 15-73 314-368 (562)
401 KOG1487 GTP-binding protein DR 97.8 0.00014 2.9E-09 51.7 7.7 91 15-107 59-156 (358)
402 PRK11537 putative GTP-binding 97.8 0.0002 4.4E-09 52.9 8.6 23 16-38 5-27 (318)
403 KOG0466 Translation initiation 97.8 6.5E-06 1.4E-10 59.5 0.6 150 10-165 33-228 (466)
404 PRK13695 putative NTPase; Prov 97.8 0.00046 1E-08 46.5 9.4 22 16-37 1-22 (174)
405 COG1162 Predicted GTPases [Gen 97.7 0.00021 4.5E-09 52.0 7.8 82 80-165 72-154 (301)
406 PRK11889 flhF flagellar biosyn 97.7 0.00013 2.9E-09 55.1 6.9 135 15-160 241-412 (436)
407 cd02038 FleN-like FleN is a me 97.7 0.00074 1.6E-08 43.9 9.5 105 20-132 5-109 (139)
408 PRK14721 flhF flagellar biosyn 97.6 0.0008 1.7E-08 51.5 9.8 23 15-37 191-213 (420)
409 COG0523 Putative GTPases (G3E 97.6 0.0015 3.2E-08 48.4 10.7 65 87-160 116-184 (323)
410 COG1419 FlhF Flagellar GTP-bin 97.6 0.0004 8.6E-09 52.4 7.6 130 15-157 203-370 (407)
411 cd00009 AAA The AAA+ (ATPases 97.6 0.00045 9.8E-09 44.4 7.1 25 15-39 19-43 (151)
412 PRK05703 flhF flagellar biosyn 97.6 0.00074 1.6E-08 52.0 9.2 86 64-160 300-392 (424)
413 KOG2484 GTPase [General functi 97.6 7E-05 1.5E-09 55.9 3.3 57 12-73 249-306 (435)
414 PRK00771 signal recognition pa 97.6 0.00024 5.2E-09 54.7 6.2 85 65-160 177-267 (437)
415 KOG2485 Conserved ATP/GTP bind 97.6 0.00021 4.5E-09 51.9 5.5 60 12-73 140-205 (335)
416 PF13207 AAA_17: AAA domain; P 97.6 7.5E-05 1.6E-09 47.1 3.0 22 17-38 1-22 (121)
417 PRK08118 topology modulation p 97.6 7.3E-05 1.6E-09 50.2 3.1 23 16-38 2-24 (167)
418 cd02042 ParA ParA and ParB of 97.5 0.00053 1.1E-08 42.1 6.6 82 18-111 2-84 (104)
419 COG0563 Adk Adenylate kinase a 97.5 8.1E-05 1.8E-09 50.4 2.9 23 16-38 1-23 (178)
420 TIGR00959 ffh signal recogniti 97.5 0.0027 5.9E-08 48.9 11.4 86 64-160 183-274 (428)
421 PRK07261 topology modulation p 97.5 9.5E-05 2.1E-09 49.8 3.0 22 17-38 2-23 (171)
422 KOG1534 Putative transcription 97.5 0.00017 3.7E-09 49.7 4.1 23 15-37 3-25 (273)
423 PF13671 AAA_33: AAA domain; P 97.5 9.6E-05 2.1E-09 48.0 2.9 20 18-37 2-21 (143)
424 PF13555 AAA_29: P-loop contai 97.5 0.00014 2.9E-09 40.3 3.0 21 17-37 25-45 (62)
425 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.0012 2.6E-08 39.5 7.5 77 18-109 2-79 (99)
426 PRK12726 flagellar biosynthesi 97.5 0.00068 1.5E-08 51.2 7.4 86 64-160 286-377 (407)
427 PRK10867 signal recognition pa 97.5 0.003 6.4E-08 48.7 10.8 86 64-160 184-275 (433)
428 COG1126 GlnQ ABC-type polar am 97.4 0.00013 2.7E-09 50.5 2.9 23 17-39 30-52 (240)
429 cd03111 CpaE_like This protein 97.4 0.00096 2.1E-08 41.3 6.6 103 18-129 2-106 (106)
430 PF05621 TniB: Bacterial TniB 97.4 0.00061 1.3E-08 49.6 6.4 105 13-131 59-191 (302)
431 PF11111 CENP-M: Centromere pr 97.4 0.014 3E-07 39.1 12.2 128 10-162 10-137 (176)
432 PF13521 AAA_28: AAA domain; P 97.4 0.00011 2.5E-09 48.9 2.4 22 17-38 1-22 (163)
433 COG1116 TauB ABC-type nitrate/ 97.4 0.00016 3.5E-09 50.9 3.0 23 17-39 31-53 (248)
434 COG1136 SalX ABC-type antimicr 97.4 0.00017 3.8E-09 50.4 3.0 23 17-39 33-55 (226)
435 PRK14723 flhF flagellar biosyn 97.3 0.0044 9.6E-08 50.8 11.2 136 16-160 186-358 (767)
436 PRK06731 flhF flagellar biosyn 97.3 0.0023 4.9E-08 46.3 8.6 133 16-160 76-246 (270)
437 PRK06995 flhF flagellar biosyn 97.3 0.0036 7.8E-08 48.9 10.0 22 16-37 257-278 (484)
438 PRK12723 flagellar biosynthesi 97.3 0.0053 1.2E-07 46.7 10.7 85 64-159 255-346 (388)
439 PF00005 ABC_tran: ABC transpo 97.3 0.00025 5.3E-09 45.7 3.0 23 17-39 13-35 (137)
440 cd02019 NK Nucleoside/nucleoti 97.3 0.00028 6.1E-09 40.1 2.9 21 18-38 2-22 (69)
441 cd03110 Fer4_NifH_child This p 97.3 0.0029 6.3E-08 42.8 8.1 85 63-157 92-176 (179)
442 PF03205 MobB: Molybdopterin g 97.2 0.0003 6.4E-09 45.8 3.0 22 17-38 2-23 (140)
443 PRK14738 gmk guanylate kinase; 97.2 0.00039 8.4E-09 48.3 3.7 28 11-38 9-36 (206)
444 PF00004 AAA: ATPase family as 97.2 0.00031 6.8E-09 44.7 2.9 22 18-39 1-22 (132)
445 PRK06217 hypothetical protein; 97.2 0.00033 7.2E-09 47.7 3.1 23 16-38 2-24 (183)
446 PRK10078 ribose 1,5-bisphospho 97.2 0.00036 7.7E-09 47.6 3.2 22 17-38 4-25 (186)
447 PF13238 AAA_18: AAA domain; P 97.2 0.00032 7E-09 44.5 2.8 21 18-38 1-21 (129)
448 cd00071 GMPK Guanosine monopho 97.2 0.00037 8E-09 45.2 3.0 21 18-38 2-22 (137)
449 TIGR00150 HI0065_YjeE ATPase, 97.2 0.0013 2.9E-08 42.3 5.5 24 16-39 23-46 (133)
450 KOG3929 Uncharacterized conser 97.2 0.00011 2.4E-09 52.0 0.6 88 12-103 42-135 (363)
451 smart00382 AAA ATPases associa 97.2 0.00041 8.8E-09 44.2 3.2 26 16-41 3-28 (148)
452 KOG1533 Predicted GTPase [Gene 97.2 0.00021 4.5E-09 50.0 1.8 67 65-133 98-176 (290)
453 TIGR00235 udk uridine kinase. 97.2 0.00053 1.1E-08 47.6 3.8 25 13-37 4-28 (207)
454 TIGR02322 phosphon_PhnN phosph 97.2 0.00037 8E-09 47.1 2.9 22 17-38 3-24 (179)
455 COG0194 Gmk Guanylate kinase [ 97.2 0.00029 6.3E-09 47.6 2.3 24 16-39 5-28 (191)
456 COG3845 ABC-type uncharacteriz 97.2 0.0034 7.3E-08 48.5 8.2 49 79-131 150-201 (501)
457 COG1763 MobB Molybdopterin-gua 97.2 0.00049 1.1E-08 45.7 3.3 50 18-78 5-54 (161)
458 TIGR03263 guanyl_kin guanylate 97.1 0.00045 9.8E-09 46.7 3.1 22 17-38 3-24 (180)
459 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00046 1E-08 42.7 2.8 21 16-36 16-36 (107)
460 COG3839 MalK ABC-type sugar tr 97.1 0.00043 9.3E-09 51.4 3.0 22 18-39 32-53 (338)
461 PRK14530 adenylate kinase; Pro 97.1 0.00047 1E-08 48.2 3.1 22 16-37 4-25 (215)
462 PF04665 Pox_A32: Poxvirus A32 97.1 0.00054 1.2E-08 48.5 3.2 27 12-38 10-36 (241)
463 PRK03839 putative kinase; Prov 97.1 0.00054 1.2E-08 46.4 3.0 21 17-37 2-22 (180)
464 PRK05480 uridine/cytidine kina 97.1 0.00075 1.6E-08 46.9 3.8 25 13-37 4-28 (209)
465 cd01130 VirB11-like_ATPase Typ 97.1 0.00059 1.3E-08 46.6 3.2 25 15-39 25-49 (186)
466 PF07728 AAA_5: AAA domain (dy 97.1 0.00061 1.3E-08 44.1 3.1 21 17-37 1-21 (139)
467 COG1120 FepC ABC-type cobalami 97.1 0.00054 1.2E-08 48.9 3.0 21 17-37 30-50 (258)
468 cd02023 UMPK Uridine monophosp 97.1 0.00052 1.1E-08 47.2 2.9 20 18-37 2-21 (198)
469 cd03238 ABC_UvrA The excision 97.1 0.0006 1.3E-08 46.2 3.1 23 15-37 21-43 (176)
470 KOG0780 Signal recognition par 97.0 0.0021 4.6E-08 48.3 6.0 49 63-111 183-237 (483)
471 KOG3347 Predicted nucleotide k 97.0 0.00054 1.2E-08 44.7 2.5 25 13-37 5-29 (176)
472 PRK14531 adenylate kinase; Pro 97.0 0.00064 1.4E-08 46.3 3.1 23 15-37 2-24 (183)
473 cd02036 MinD Bacterial cell di 97.0 0.019 4E-07 38.6 10.3 83 65-155 64-146 (179)
474 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00061 1.3E-08 46.3 3.0 21 16-36 4-24 (188)
475 PRK14737 gmk guanylate kinase; 97.0 0.00064 1.4E-08 46.5 3.0 22 17-38 6-27 (186)
476 cd03222 ABC_RNaseL_inhibitor T 97.0 0.00068 1.5E-08 46.0 3.1 24 16-39 26-49 (177)
477 PRK14532 adenylate kinase; Pro 97.0 0.00066 1.4E-08 46.3 3.0 21 17-37 2-22 (188)
478 PRK13851 type IV secretion sys 97.0 0.00059 1.3E-08 51.0 2.9 26 14-39 161-186 (344)
479 COG3840 ThiQ ABC-type thiamine 97.0 0.00071 1.5E-08 45.8 3.0 24 16-39 26-49 (231)
480 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.00073 1.6E-08 47.2 3.2 23 17-39 32-54 (218)
481 cd01131 PilT Pilus retraction 97.0 0.00065 1.4E-08 46.9 2.9 22 18-39 4-25 (198)
482 COG1117 PstB ABC-type phosphat 97.0 0.00057 1.2E-08 47.4 2.5 21 17-37 35-55 (253)
483 PRK10751 molybdopterin-guanine 97.0 0.00068 1.5E-08 45.7 2.9 23 16-38 7-29 (173)
484 PRK13949 shikimate kinase; Pro 97.0 0.00074 1.6E-08 45.4 3.1 21 17-37 3-23 (169)
485 PF02367 UPF0079: Uncharacteri 97.0 0.0015 3.3E-08 41.4 4.3 23 16-38 16-38 (123)
486 PRK02496 adk adenylate kinase; 97.0 0.00081 1.8E-08 45.7 3.2 22 16-37 2-23 (184)
487 cd03226 ABC_cobalt_CbiO_domain 97.0 0.0008 1.7E-08 46.6 3.2 23 17-39 28-50 (205)
488 KOG0066 eIF2-interacting prote 97.0 0.0076 1.6E-07 46.4 8.5 27 13-39 611-637 (807)
489 TIGR00960 3a0501s02 Type II (G 97.0 0.0008 1.7E-08 46.9 3.2 23 17-39 31-53 (216)
490 cd03225 ABC_cobalt_CbiO_domain 97.0 0.00082 1.8E-08 46.7 3.2 23 17-39 29-51 (211)
491 TIGR01166 cbiO cobalt transpor 97.0 0.00078 1.7E-08 46.0 3.0 23 17-39 20-42 (190)
492 cd01428 ADK Adenylate kinase ( 96.9 0.00074 1.6E-08 46.1 2.8 22 17-38 1-22 (194)
493 cd03292 ABC_FtsE_transporter F 96.9 0.0009 1.9E-08 46.6 3.3 23 17-39 29-51 (214)
494 PRK00300 gmk guanylate kinase; 96.9 0.00079 1.7E-08 46.5 2.9 23 16-38 6-28 (205)
495 cd03264 ABC_drug_resistance_li 96.9 0.00082 1.8E-08 46.7 3.0 22 17-38 27-48 (211)
496 cd03261 ABC_Org_Solvent_Resist 96.9 0.00089 1.9E-08 47.4 3.2 23 17-39 28-50 (235)
497 COG4525 TauB ABC-type taurine 96.9 0.00083 1.8E-08 46.0 2.9 23 17-39 33-55 (259)
498 cd02025 PanK Pantothenate kina 96.9 0.00074 1.6E-08 47.4 2.7 20 18-37 2-21 (220)
499 TIGR03608 L_ocin_972_ABC putat 96.9 0.00094 2E-08 46.2 3.3 23 17-39 26-48 (206)
500 PRK10646 ADP-binding protein; 96.9 0.0051 1.1E-07 40.6 6.5 22 17-38 30-51 (153)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-43 Score=230.86 Aligned_cols=157 Identities=64% Similarity=1.097 Sum_probs=151.4
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
..+.++.+||+++|++|+|||+|+.||..+.|+..+..|+++++..+.+.++++.+.+.+|||.||++|+++...+|+++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCe-EEEEecccCCCC
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIK-FFETVSMFNNEW 166 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v 166 (166)
|++|+|||+++..||+.+..|+.++.++...++|.++||||+|+ .+.+.++.++++.|+.+++++ |+|+|||.+.||
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl-~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDL-TEKRVVSTEEAQEFADELGIPIFLETSAKDSTNV 160 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeecccc-HhheecCHHHHHHHHHhcCCcceeecccCCccCH
Confidence 99999999999999999999999999999989999999999999 778899999999999999998 999999999876
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-41 Score=220.86 Aligned_cols=154 Identities=43% Similarity=0.756 Sum_probs=147.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
....+||+++|+.++|||||+.|+..+.|.+...+|++.-+..+.+.+++..++|.||||.|+++|+++-+.||+++++.
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|+|||+++.+||..++.|++++.+..++++-+.|||||+|| .+.+++..+|++.+|++.++.|||+|||||.||
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL-~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv 155 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADL-LERREVEFEEAQAYAESQGLLFFETSAKTGENV 155 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhh-hhcccccHHHHHHHHHhcCCEEEEEecccccCH
Confidence 99999999999999999999999988888889999999999 557899999999999999999999999999986
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-40 Score=220.66 Aligned_cols=156 Identities=78% Similarity=1.238 Sum_probs=151.7
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
....+.+||+++|++++|||+++.+|..+.|...+..|.++++..+.+..++..+.+.+||+.||++|+.+...|++.++
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++++|||+++..||+++..|+..+.++....+|++|||||+|+ +..++++.++++++|.++|+.|+|+||++|.||
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~-~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDL-EEKRQVSKERGEALAREYGIKFFETSAKTNFNI 162 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccc-cccccccHHHHHHHHHHhCCeEEEccccCCCCH
Confidence 9999999999999999999999999999989999999999999 678999999999999999999999999999986
No 4
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-40 Score=215.49 Aligned_cols=154 Identities=50% Similarity=0.927 Sum_probs=149.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
..+.+|++++|+.|+|||+|+.+++.+.|.+.++.|.++++..+.+.++++.+++.+||+.|++.+.++...||+.+.+.
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++|||++.++||..+..|+..+.++..++..|+|+|||+|| +..+.+..+|.+.||++.|+.|+++||++++||
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL-~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~V 156 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDL-EARREVSKEEGEAFAREHGLIFMETSAKTAENV 156 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhh-hccccccHHHHHHHHHHcCceeehhhhhhhhhH
Confidence 99999999999999999999999998889999999999999 778899999999999999999999999999986
No 5
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2.8e-38 Score=215.71 Aligned_cols=153 Identities=49% Similarity=0.840 Sum_probs=140.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
.++.+||+++|..++|||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|+++|..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45779999999999999999999999999888888888888878888899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|+|||++++.||+.+..|++++.+.. ++.|++|||||.|+ ...+.+..++++.+++..+++|++|||++|.||
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL-~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V 155 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHL-AFKRQVATEQAQAYAERNGMTFFEVSPLCNFNI 155 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccc-hhccCCCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 99999999999999999999997765 48999999999999 555678889999999999999999999999986
No 6
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-39 Score=210.84 Aligned_cols=154 Identities=38% Similarity=0.687 Sum_probs=146.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
.-+.+|++++|+.++||||||.++..+.|...|.+|+++++....+.+.+..++|.+|||.||++|+.+.+.|++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAAD-NVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|+|||+++..||++..+|++.+...+.. ++-|++||||.|| .+.+++..+|.+..|++++..|.++||++|.||
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL-~dkrqvs~eEg~~kAkel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDL-SDKRQVSIEEGERKAKELNAEFIETSAKAGENV 173 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccc-cchhhhhHHHHHHHHHHhCcEEEEecccCCCCH
Confidence 9999999999999999999999887665 5889999999999 666899999999999999999999999999987
No 7
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=8.8e-39 Score=208.60 Aligned_cols=154 Identities=38% Similarity=0.720 Sum_probs=144.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
...+||+++|++|+|||||++++.+.+|...+..|++.++..+++.++++.+.+++|||.|+++|.++...+++.+|.++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 55699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCC-CCcccchHHHHHHHHHhC-CeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHA----ADNVNKILVGNKADMDE-SKRAVPTAKGQELADEYG-IKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piivv~~K~Dl~~-~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 166 (166)
++||++++.||+.+..|.+++..+. +.+.|++|+|||+|+.+ ..++++...+++||+..| ++|||+|||.+.||
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV 166 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence 9999999999999999999986644 35789999999999955 348899999999999997 89999999999886
No 8
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=6.5e-38 Score=215.78 Aligned_cols=150 Identities=46% Similarity=0.889 Sum_probs=138.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+.|+++|..|+|||||++++..+.|...+.+|.+.++....+.+++..+.+.+||++|+++|+.++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHh-CCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY-GIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v 166 (166)
|+++++||+.+..|+..+.+....+.|+++||||+|+ ...+++..++++++++++ ++.|++|||++|.||
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL-~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV 151 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC-ETDREISRQQGEKFAQQITGMRFCEASAKDNFNV 151 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc-ccccccCHHHHHHHHHhcCCCEEEEecCCCCCCH
Confidence 9999999999999999887766668999999999999 456778888999999886 789999999999986
No 9
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.2e-37 Score=211.56 Aligned_cols=153 Identities=24% Similarity=0.568 Sum_probs=137.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
++..+||+++|++++|||||++++..+.|...+.||.+..+. ..+.+++..+.+.+||++|+++|..++..+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 356799999999999999999999999999999999875554 6678899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CcccchHHHHHHHHHhCC-eEEEE
Q 031083 92 LLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFET 158 (166)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~ 158 (166)
++|||+++++||+.+ ..|+..+.+.. ++.|++|||||+|+.+. .+.+..++++++|+++++ +|+||
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 78999887765 47999999999999542 345889999999999996 99999
Q ss_pred ecccCCC-C
Q 031083 159 VSMFNNE-W 166 (166)
Q Consensus 159 Sa~~~~~-v 166 (166)
||++|+| |
T Consensus 160 SAk~~~n~v 168 (182)
T cd04172 160 SALQSENSV 168 (182)
T ss_pred CcCCCCCCH
Confidence 9999997 5
No 10
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.6e-38 Score=201.10 Aligned_cols=155 Identities=49% Similarity=0.841 Sum_probs=145.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
.....+||+++|.+|+|||||+.+|..+.|.+....|++.++..+.+.+++.++++.+||+.||++|+.+...||+.+.+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|+|||++.+++|..+.-|++++..++ +++.-.++|+||+|. +.++.+..+|...||+++++-|.||||++.+||
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDk-es~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V 162 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDK-ESERVVDREEGLKFARKHRCLFIECSAKTRENV 162 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccc-hhcccccHHHHHHHHHhhCcEEEEcchhhhccH
Confidence 999999999999999999999996654 457778999999997 778999999999999999999999999999986
No 11
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-38 Score=199.02 Aligned_cols=156 Identities=55% Similarity=0.997 Sum_probs=149.2
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
..-.+.+|++++|...+|||||+.++.+..|++.+..|.++++..+.+.-..+++.+.+||+.|+++|+.+...++++++
T Consensus 16 qnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgam 95 (193)
T KOG0093|consen 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAM 95 (193)
T ss_pred ccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccc
Confidence 34467789999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++|+|||+++.+||..++.|.-++...+..+.|+|+|+||+|+ ++++.++.+.++.+++++|+.|||+|||.+.||
T Consensus 96 gfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDm-d~eRvis~e~g~~l~~~LGfefFEtSaK~NinV 171 (193)
T KOG0093|consen 96 GFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDM-DSERVISHERGRQLADQLGFEFFETSAKENINV 171 (193)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCC-ccceeeeHHHHHHHHHHhChHHhhhcccccccH
Confidence 9999999999999999999999999988889999999999999 888999999999999999999999999999886
No 12
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.5e-37 Score=207.90 Aligned_cols=150 Identities=23% Similarity=0.565 Sum_probs=134.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
++||+++|++++|||||++++..+.|...+.+|.+..+. ..+.+++..+.+.+||++|+++|..++..+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 479999999999999999999999999999998876554 5678899999999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CcccchHHHHHHHHHhCC-eEEEEecc
Q 031083 95 YDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETVSM 161 (166)
Q Consensus 95 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (166)
||+++++||+.+ ..|+..+.+..+ +.|+++||||+||.++ ...+..++++++++++++ +|+||||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 789998887654 7899999999999542 245888999999999997 89999999
Q ss_pred cCCC-C
Q 031083 162 FNNE-W 166 (166)
Q Consensus 162 ~~~~-v 166 (166)
+|+| |
T Consensus 159 ~~~~~v 164 (178)
T cd04131 159 TSEKSV 164 (178)
T ss_pred cCCcCH
Confidence 9985 5
No 13
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-37 Score=206.27 Aligned_cols=158 Identities=49% Similarity=0.895 Sum_probs=152.5
Q ss_pred cCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 031083 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (166)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 87 (166)
...+.++.+||+++|++++|||-|+.|+..+.|..+..+|+++++....+.++++.+...||||.||++|+.+...+|+.
T Consensus 7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg 86 (222)
T KOG0087|consen 7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG 86 (222)
T ss_pred CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+.+.++|||++.+.+|+.+..|+.++..+..+++++++||||+|| ...+.++.++++.++...++.|+|+||..+.||
T Consensus 87 AvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL-~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNV 164 (222)
T KOG0087|consen 87 AVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDL-NHLRAVPTEDGKAFAEKEGLFFLETSALDATNV 164 (222)
T ss_pred cceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhh-hhccccchhhhHhHHHhcCceEEEecccccccH
Confidence 999999999999999999999999999999999999999999999 668889999999999999999999999999886
No 14
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.9e-37 Score=213.80 Aligned_cols=157 Identities=20% Similarity=0.478 Sum_probs=138.1
Q ss_pred cCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 031083 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (166)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 87 (166)
.....-..+||+++|++++|||+|+++|..+.|...+.+|.+..+. ..+.+++..+.+.+||++|+++|..++..++++
T Consensus 6 ~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ 84 (232)
T cd04174 6 IPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSD 84 (232)
T ss_pred cCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCC
Confidence 3344457899999999999999999999999999999999876654 567889999999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CcccchHHHHHHHHHhCC-e
Q 031083 88 AMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-K 154 (166)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~ 154 (166)
+|++|+|||+++++||+.+ ..|+..+.+..+ +.|++|||||+|+... .+.+..++++++|+++++ .
T Consensus 85 ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~ 163 (232)
T cd04174 85 SDAVLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEV 163 (232)
T ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCE
Confidence 9999999999999999985 789998887654 7899999999999532 356888999999999998 6
Q ss_pred EEEEecccCC-CC
Q 031083 155 FFETVSMFNN-EW 166 (166)
Q Consensus 155 ~~~~Sa~~~~-~v 166 (166)
|+||||++|+ ||
T Consensus 164 ~~EtSAktg~~~V 176 (232)
T cd04174 164 YLECSAFTSEKSI 176 (232)
T ss_pred EEEccCCcCCcCH
Confidence 9999999997 55
No 15
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.2e-36 Score=205.55 Aligned_cols=149 Identities=33% Similarity=0.671 Sum_probs=133.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|.+++|||||+.++..+.|..++.+|.+..+ ...+.+++..+.+.+||++|+++|+.++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999999999987655 456778889999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC---------cccchHHHHHHHHHhCC-eEEEEecccCC
Q 031083 96 DVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDESK---------RAVPTAKGQELADEYGI-KFFETVSMFNN 164 (166)
Q Consensus 96 d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~~K~Dl~~~~---------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (166)
|+++++||+.+ ..|+..+.+.. .+.|++|||||+|+.+.. +.+..++++++++.+++ .|+||||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999887665 479999999999994432 34788999999999997 69999999999
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
||
T Consensus 160 nV 161 (176)
T cd04133 160 NV 161 (176)
T ss_pred CH
Confidence 86
No 16
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.4e-36 Score=204.03 Aligned_cols=151 Identities=45% Similarity=0.846 Sum_probs=138.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
.+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999999999888888888888777788888899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
||++++++|+.+..|+..+......+.|+++|+||+|+ .....+..++++++++..+++++++||++|+||
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 152 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL-EAQRDVTYEEAKQFADENGLLFLECSAKTGENV 152 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc-ccccCcCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 99999999999999999887766668899999999999 445667788999999999999999999999985
No 17
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=4.9e-36 Score=200.42 Aligned_cols=150 Identities=56% Similarity=1.010 Sum_probs=137.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++++|||||++++..+.+.+.+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999999888999888888788888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++++|+.+..|+..+......+.|+++|+||.|+ ...+.+..+++..+++.++++|+++||++|.||
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl-~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v 150 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADE-EQKRQVGDEQGNKLAKEYGMDFFETSACTNSNI 150 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc-ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999988766668999999999999 455667788999999999999999999999886
No 18
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-37 Score=196.22 Aligned_cols=158 Identities=45% Similarity=0.820 Sum_probs=151.2
Q ss_pred cCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 031083 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (166)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 87 (166)
+.+..++.+|++++|+.|+|||+|+++|+.+++......|.++++..+.+.+.++.+++.|||+.||++|++....|++.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+.+.++|||++++++|+.+..|+.......++++-+++++||.|| ++++++...|+.+||.++.+.+.|+||+||+||
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL-~~~R~VtflEAs~FaqEnel~flETSa~TGeNV 159 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDL-DPEREVTFLEASRFAQENELMFLETSALTGENV 159 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhc-ChhhhhhHHHHHhhhcccceeeeeecccccccH
Confidence 999999999999999999999999998888889999999999999 889999999999999999999999999999997
No 19
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1e-35 Score=199.95 Aligned_cols=153 Identities=76% Similarity=1.233 Sum_probs=139.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
++.+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 36799999999999999999999999999999999888887788888888899999999999999998889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|||++++++|+.+..|+..+.+....+.|+++|+||+|+. +..++..+++..++..++++++++||++|.||
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 153 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME-EKRVVSKEEGEALADEYGIKFLETSAKANINV 153 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999987766689999999999994 35566778899999999999999999999885
No 20
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.2e-35 Score=203.56 Aligned_cols=150 Identities=29% Similarity=0.620 Sum_probs=131.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
.+||+++|+.++|||||++++..+.|...+.+|.+..+ ...+.+++..+.+.+||++|+++|+.++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999989999987544 35567888899999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------cccchHHHHHHHHHhC-CeEEEEecc
Q 031083 95 YDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYG-IKFFETVSM 161 (166)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 161 (166)
||+++++||+.+. .|+..+.+.. .+.|++|||||.||.+.. ..+..+++++++++++ ++|+++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999997 5777776554 479999999999995432 2356788999999999 599999999
Q ss_pred cCCCC
Q 031083 162 FNNEW 166 (166)
Q Consensus 162 ~~~~v 166 (166)
+|+||
T Consensus 161 ~g~~v 165 (191)
T cd01875 161 NQDGV 165 (191)
T ss_pred CCCCH
Confidence 99986
No 21
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5.8e-37 Score=193.62 Aligned_cols=152 Identities=57% Similarity=0.983 Sum_probs=144.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
...++.+++|++++|||+|+.+|..+.|...|..|++.++.++.+.++|..+.+.|||+.|+++|+.+...+++..++++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|||.++.+||.+..+|++++.++++ .+|-++||||.|. .+.+.+..++++.|+.+.|+.+||+|+|+++||
T Consensus 86 vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~-~~RrvV~t~dAr~~A~~mgie~FETSaKe~~Nv 157 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDD-PERRVVDTEDARAFALQMGIELFETSAKENENV 157 (198)
T ss_pred EEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCC-ccceeeehHHHHHHHHhcCchheehhhhhcccc
Confidence 99999999999999999999998876 7899999999998 566778889999999999999999999999986
No 22
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1e-35 Score=198.84 Aligned_cols=149 Identities=40% Similarity=0.798 Sum_probs=140.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 96 (166)
||+++|++++|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++++..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999889999999999999999999999999999888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 97 VTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+++++|++.+..|+..+....+.+.|++|||||.|+ .+.+.+..+++++++++++++|+++||+++.||
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~-~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v 149 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDL-SDEREVSVEEAQEFAKELGVPYFEVSAKNGENV 149 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTG-GGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTH
T ss_pred ccccccccccccccccccccccccccceeeeccccc-cccccchhhHHHHHHHHhCCEEEEEECCCCCCH
Confidence 999999999999999998888767999999999999 446788899999999999999999999999875
No 23
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.8e-35 Score=199.69 Aligned_cols=150 Identities=33% Similarity=0.568 Sum_probs=133.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
.+||+++|.+++|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999999888888887444 45677888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
||++++.||+.+..|+..+.+.. ..+.|+++|+||+|+ ...+++..++++++++.++++|++|||++|.||
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl-~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 152 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDL-ESQRQVTTEEGRNLAREFNCPFFETSAALRHYI 152 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhh-hhcCccCHHHHHHHHHHhCCEEEEEecCCCCCH
Confidence 99999999999999888886643 357999999999998 445678888999999999999999999999986
No 24
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=3.5e-35 Score=197.01 Aligned_cols=150 Identities=55% Similarity=0.973 Sum_probs=135.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888887777777777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++++++.+..|+..+.+....+.|+++|+||+|+ .+.+.+..+++.++++.++++++++||++|.||
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 151 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM-EDERVVSSERGRQLADQLGFEFFEASAKENINV 151 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECccc-CcccccCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 9999999999999999987766668899999999999 444556678888999999999999999999985
No 25
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.8e-35 Score=205.98 Aligned_cols=149 Identities=26% Similarity=0.540 Sum_probs=129.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
++||+|+|++++|||||+++|..+.|+..+.||.+..+. ..+.+++..+.+.+||++|++.|..++..+++++|++++|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 479999999999999999999999999999999875554 5678899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CcccchHHHHHHHHHhCC-eEEEEecc
Q 031083 95 YDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETVSM 161 (166)
Q Consensus 95 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~piivv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (166)
||++++++|+.+.. |...+.. ..++.|++|||||+|+... ...+..++++.+++++++ +|+||||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 99999999999965 5544543 3458999999999999542 113678899999999995 99999999
Q ss_pred cCCC
Q 031083 162 FNNE 165 (166)
Q Consensus 162 ~~~~ 165 (166)
++++
T Consensus 159 ~~~~ 162 (222)
T cd04173 159 SSER 162 (222)
T ss_pred cCCc
Confidence 9875
No 26
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=2.9e-35 Score=200.18 Aligned_cols=150 Identities=27% Similarity=0.541 Sum_probs=132.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|..++|||||++++..+.|...+.+|.+.++....+..++..+.+.+||++|+++|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999999999988888788889998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----CcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES----KRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++++++++..|+..+.+......| ++|+||+|+..+ ......++++++++.++++++++||++|.||
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v 154 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINV 154 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999998776555667 678999999421 1122346788899999999999999999986
No 27
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=4.4e-35 Score=196.63 Aligned_cols=151 Identities=68% Similarity=1.111 Sum_probs=137.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
.+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999999888888888888888888888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
||+++++++..+..|+..+......+.|+++|+||.|+ .....+..+++..+++.++++++++||++|+||
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 152 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TDKRVVDYSEAQEFADELGIPFLETSAKNATNV 152 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhc-ccccCCCHHHHHHHHHHcCCeEEEEECCCCcCH
Confidence 99999999999999999997766567899999999998 444567778899999999999999999999885
No 28
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=5.1e-35 Score=197.91 Aligned_cols=149 Identities=27% Similarity=0.601 Sum_probs=130.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|.+++|||||++++..+.|...+.||.+..+. ..+.+++..+.+.+||++|+++|..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999998888998875554 45678888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CcccchHHHHHHHHHhC-CeEEEEeccc
Q 031083 96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYG-IKFFETVSMF 162 (166)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (166)
|++++++|+.+. .|+..+.... .+.|++||+||+|+... .+.+..+++++++++.+ +.|++|||++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999997 4777776654 47899999999998443 24677889999999998 6999999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
|+||
T Consensus 160 g~~v 163 (175)
T cd01874 160 QKGL 163 (175)
T ss_pred CCCH
Confidence 9986
No 29
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.1e-35 Score=202.04 Aligned_cols=150 Identities=37% Similarity=0.719 Sum_probs=134.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
+||+++|++++|||||+++|.++.+...+.+|.+.++....+.++ +..+.+.+||++|++++..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988889999888887888887 7889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC-CeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNIDQHA----ADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 166 (166)
||++++++|+.+..|+..+.... ..++|++||+||+|+. ....+..++++++++..+ ..|+++||++|.||
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK-KRLAKDGEQMDQFCKENGFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc-cccccCHHHHHHHHHHcCCceEEEEeCCCCCCH
Confidence 99999999999999998876532 2578999999999993 346677889999999999 69999999999885
No 30
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.1e-34 Score=194.39 Aligned_cols=152 Identities=51% Similarity=0.915 Sum_probs=138.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
+.+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++..++..++++++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 56899999999999999999999999988888998888888888888888899999999999999989999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|||++++.+++.+..|+..+.+....+.|+++|+||.|+. ..+.+..++...+++..+++++++||++|.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 153 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR-HLRAVPTEEAKAFAEKNGLSFIETSALDGTNV 153 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-ccccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 9999999999999999999988776679999999999994 34566778889999988999999999999885
No 31
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=9.3e-35 Score=197.42 Aligned_cols=153 Identities=52% Similarity=0.969 Sum_probs=135.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEEC----------CeEEEEEEEeCCCccccccccc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD----------GKRIKLQIWDTAGQERFRTITT 82 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~ 82 (166)
++.+||+++|++++|||||++++.++.+...+.++.+.++....+.+. +..+.+.+||++|++++...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999999989988887776666554 4568899999999999999999
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecc
Q 031083 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSM 161 (166)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (166)
.+++++|++++|||+++++++..+..|+..+.... ..+.|+++|+||+|+ .+.+.+..+++.+++++++++++++||+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl-~~~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADL-EDQRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccc-hhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 99999999999999999999999999999887653 347899999999999 4445677788999999999999999999
Q ss_pred cCCCC
Q 031083 162 FNNEW 166 (166)
Q Consensus 162 ~~~~v 166 (166)
+|.||
T Consensus 161 ~~~~v 165 (180)
T cd04127 161 TGTNV 165 (180)
T ss_pred CCCCH
Confidence 99885
No 32
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.7e-34 Score=193.61 Aligned_cols=152 Identities=45% Similarity=0.839 Sum_probs=136.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
+.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 56899999999999999999999999988888888878887888888888899999999999999888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-eEEEEecccCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 166 (166)
|||++++.+++.+..|+..+......+.|+++|+||+|+. ..+.+..+++.++++..++ .++++||++|.||
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 154 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE-EQREVLFEEACTLAEKNGMLAVLETSAKESQNV 154 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCcEEEEEECCCCCCH
Confidence 9999999999999999999987666689999999999994 3456677888999999886 7899999999885
No 33
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.6e-34 Score=201.71 Aligned_cols=150 Identities=26% Similarity=0.536 Sum_probs=133.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
...+||+++|.+|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|+++|..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 77799999999999999999999999999999999988888777878888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|||++++++++.+..|+..+.+.. .+.|+++||||+|+.. ..+..+++ ++++..+++|+++||++|.||
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~--~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh--ccCCHHHH-HHHHhcCCEEEEcCCCCCCCH
Confidence 9999999999999999999997764 4799999999999842 33344445 788888999999999999986
No 34
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=2e-34 Score=194.83 Aligned_cols=150 Identities=31% Similarity=0.621 Sum_probs=130.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
.+||+++|.+++|||||+.++..+.+...+.++.+ +.+...+.+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 37999999999999999999999999888888876 34445667888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CcccchHHHHHHHHHhCC-eEEEEecc
Q 031083 95 YDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETVSM 161 (166)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (166)
||+++++||+.+. .|+..+.... .+.|+++|+||+|+.+. ...+..+++++++++++. +|++|||+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999996 5777776554 47999999999999432 235778999999999994 99999999
Q ss_pred cCCCC
Q 031083 162 FNNEW 166 (166)
Q Consensus 162 ~~~~v 166 (166)
+|+||
T Consensus 159 ~~~~i 163 (174)
T cd01871 159 TQKGL 163 (174)
T ss_pred ccCCH
Confidence 99986
No 35
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=2.4e-34 Score=193.85 Aligned_cols=150 Identities=36% Similarity=0.715 Sum_probs=133.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 96 (166)
||+++|.+++|||||++++..+.|...+.++.+.++....+.+++..+.+.+||++|+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999999999999988888888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCc-ccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 97 VTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKR-AVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++++++++.+..|+..+.+. .+.+.|+++|+||+|+..... ....+++..++++++++|+++||++|.||
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v 153 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENV 153 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 99999999999999988654 344678999999999843322 33456778889999999999999999985
No 36
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=4e-34 Score=192.42 Aligned_cols=153 Identities=50% Similarity=0.909 Sum_probs=138.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
++.+||+++|.+++|||||++++.++.+...+.++.+.++....+..++....+.+||++|++++..+...+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999999998888888888888788888888889999999999999988889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|||++++.+++.+..|+..+.+...++.|+++|+||.|+. +...+..++++.+++..++.++++||++|+|+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 154 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE-SRREVSYEEGEAFAKEHGLIFMETSAKTASNV 154 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999987766689999999999994 34567788899999999999999999999885
No 37
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2.6e-34 Score=200.34 Aligned_cols=150 Identities=33% Similarity=0.582 Sum_probs=135.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECC-eEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
+||+++|++++|||||+++|.++.+...+.+|.+.+++...+.+++ ..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999999999999888888888864 578999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNIDQHAA---DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
||++++++|+.+..|+..+.+... .+.|+++|+||+|+ .+.+.+..++++.+++.++++++++||++|+||
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL-~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv 154 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDL-EHNRTVKDDKHARFAQANGMESCLVSAKTGDRV 154 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccc-ccccccCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 999999999999999999877542 35689999999999 445667788899999999999999999999986
No 38
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.4e-34 Score=192.31 Aligned_cols=149 Identities=36% Similarity=0.634 Sum_probs=131.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++|+|||||++++..+.+...+.++.+ +.+...+.+++..+.+.+||++|++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999998888778776 455567788888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+ ...+..+++..+++.++++++++||++|+||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED-ERVVSREEGQALARQWGCPFYETSAKSKINV 151 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceecHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 9999999999999999887643 35789999999999943 4556677788899988999999999999885
No 39
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=3.2e-34 Score=192.36 Aligned_cols=150 Identities=32% Similarity=0.738 Sum_probs=136.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999999999999998888888888899999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHAA-----DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-----~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++++++.+..|+..+.+... .+.|+++|+||+|+.+ ...+..++++.++++.+++++++||++|+|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK-HRAVSEDEGRLWAESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc-ccccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 99999999999999999877653 4789999999999943 4556778888899999999999999999885
No 40
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=5.2e-34 Score=198.86 Aligned_cols=154 Identities=49% Similarity=0.910 Sum_probs=141.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
.++.+||+++|++++|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..++++++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 56789999999999999999999999999888889998888888889999889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++|||++++.+++.+..|+..+.+....+.|+++|+||+|+ ...+.+..+++..++...+++|+++||++|.||
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl-~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v 162 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDL-NHLRSVAEEDGQALAEKEGLSFLETSALEATNV 162 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhc-ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999988876678999999999999 445667778899999999999999999999885
No 41
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-35 Score=187.09 Aligned_cols=154 Identities=47% Similarity=0.880 Sum_probs=146.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
..+.+||+++|..|+|||+|++++..+-|++....|++.++.++.+.+++.++++.+||+.|+++|+++.+.+++.+|++
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++||++.+.+|+-+..|+.++.++...++--|+|+||+|+ .+.++++.+-+++|++....-|.|+||+..+||
T Consensus 84 ilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~-~drrevp~qigeefs~~qdmyfletsakea~nv 157 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDL-ADRREVPQQIGEEFSEAQDMYFLETSAKEADNV 157 (213)
T ss_pred EEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccch-hhhhhhhHHHHHHHHHhhhhhhhhhcccchhhH
Confidence 99999999999999999999999988778888999999999 777888889999999998888999999998886
No 42
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=7.8e-34 Score=191.24 Aligned_cols=153 Identities=40% Similarity=0.712 Sum_probs=136.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
.+..+||+++|++++|||||++++.++.+.+.+.++.+.++....+..++..+.+.+||++|++++..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 35679999999999999999999999999888888888887778888899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC-CeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHA----ADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 166 (166)
++|||++++++++.+..|+..+.... ..+.|+++|+||.|+. ...+..+++++++++++ ++++++||++|+||
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 159 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP--ERQVSTEEAQAWCRENGDYPYFETSAKDATNV 159 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc--ccccCHHHHHHHHHHCCCCeEEEEECCCCCCH
Confidence 99999999999999999998876543 2468999999999984 45667888999999998 48999999999985
No 43
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=3.9e-34 Score=199.12 Aligned_cols=146 Identities=29% Similarity=0.547 Sum_probs=127.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|.+++|||||++++..+.+.. +.++.+.++....+ ..+.+.+||++|++.|..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999864 56777655554333 4578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------------CCcccchHHHHHHHHHhC-----
Q 031083 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE------------------SKRAVPTAKGQELADEYG----- 152 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~------------------~~~~~~~~~~~~~~~~~~----- 152 (166)
|++++++|+.+..|+..+.+....+.|++||+||+|+.+ ..+++..++++.++++++
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999999888776666799999999999954 256788999999999987
Q ss_pred ---------CeEEEEecccCCCC
Q 031083 153 ---------IKFFETVSMFNNEW 166 (166)
Q Consensus 153 ---------~~~~~~Sa~~~~~v 166 (166)
++|+||||++|.||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V 178 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNV 178 (220)
T ss_pred cccccccccceEEEeeCCCCCCH
Confidence 68999999999986
No 44
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=7e-34 Score=194.46 Aligned_cols=150 Identities=49% Similarity=0.845 Sum_probs=136.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++++|||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998878888888887788888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++++++.+..|+..+......+.|+++|+||.|+ .+...+..+++..+++..+++++++||++|.||
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl-~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i 150 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDL-VNNKVVDSNIAKSFCDSLNIPFFETSAKQSINV 150 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCC-cccccCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 9999999999999999998776667899999999998 444566778888999999999999999999875
No 45
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=6.4e-34 Score=190.02 Aligned_cols=150 Identities=46% Similarity=0.839 Sum_probs=136.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++++|||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888888888888888888889999999999999988899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++.++..+..|+..+......+.|+++|+||.|+. ....+..+++..+++..++.++++||++|+|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 150 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA-DQREVTFLEASRFAQENGLLFLETSALTGENV 150 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc-hhccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 99999999999999998877766789999999999994 35667788899999999999999999999885
No 46
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=5.5e-34 Score=190.93 Aligned_cols=150 Identities=35% Similarity=0.621 Sum_probs=131.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
++||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999999988887778776444 46677888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..+++.++++.++++|+++||++|.||
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWGCAFLETSAKAKINV 151 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh-ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCH
Confidence 99999999999999999887643 35799999999999943 4556667788899999999999999999885
No 47
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=9.9e-34 Score=195.32 Aligned_cols=152 Identities=57% Similarity=0.983 Sum_probs=136.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
++.+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999999988888888888888788888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|||++++++++.+..|++.+.... ...|++||+||+|+. ....+..+++..+++..+++|+++||++|.||
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi 155 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDP-ERKVVETEDAYKFAGQMGISLFETSAKENINV 155 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEECCCCcCH
Confidence 9999999999999999999887654 478999999999994 44556778889999999999999999999885
No 48
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.3e-35 Score=189.26 Aligned_cols=153 Identities=46% Similarity=0.789 Sum_probs=141.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
.+.++++++|++-+|||+|+++++.+++..-.+||.+.+++.+.+.. +|..+++.+||+.|+++|+++...|+++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 36689999999999999999999999999999999999998777655 77789999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHA--ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+++||++++.||+.+..|+.+-..+. +.+.-+.+||+|+|| ..++++..+|++.+++.+|+.|+|+||++|.||
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL-~SqRqVt~EEaEklAa~hgM~FVETSak~g~NV 161 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDL-QSQRQVTAEEAEKLAASHGMAFVETSAKNGCNV 161 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccch-hhhccccHHHHHHHHHhcCceEEEecccCCCcH
Confidence 99999999999999999999886654 345567899999999 788999999999999999999999999999997
No 49
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=7.6e-34 Score=189.73 Aligned_cols=149 Identities=34% Similarity=0.648 Sum_probs=133.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEEC--CeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
+||+++|.+++|||||++++.++.+...+.++.+.++....+.++ +..+.+.+||+||++++..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999988888888888776777776 777899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|||++++++++.+..|+..+.+.. .+.|+++|+||+|+ ..+..+..++++++++.++++++++||++|.|+
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDL-LDQAVITNEEAEALAKRLQLPLFRTSVKDDFNV 151 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhc-ccccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 999999999999999998886544 47999999999999 344556778899999999999999999999875
No 50
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.9e-34 Score=197.00 Aligned_cols=152 Identities=45% Similarity=0.816 Sum_probs=135.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
+.+||+++|++++|||||++++.++.+...+.++.+.++....+.+ ++..+.+.+||++|++++..++..+++++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 3589999999999999999999999998888888888888777776 466789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|||++++++++.+..|+..+.+... ...|++||+||.|+ .....+..+++.++++.++++|+++||++|+||
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl-~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v 154 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL-ESQRQVTREEAEKLAKDLGMKYIETSARTGDNV 154 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc-ccccccCHHHHHHHHHHhCCEEEEEeCCCCCCH
Confidence 99999999999999999999876543 36788999999999 445667788899999999999999999999985
No 51
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.6e-34 Score=194.48 Aligned_cols=150 Identities=51% Similarity=0.955 Sum_probs=133.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCC-CccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
+||+++|++++|||||++++..+.+.. .+.++.+.++....+.+++..+.+.+||+||++++...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988854 5677777777777788888899999999999999998888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
||++++++++.+..|+..+......+.|+++|+||+|+. ..+.+..++++.+++.++++|+++||++|.||
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~-~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v 151 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS-GERVVKREDGERLAKEYGVPFMETSAKTGLNV 151 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch-hccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 999999999999999999988766689999999999994 34556678899999999999999999999885
No 52
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=196.06 Aligned_cols=154 Identities=50% Similarity=0.904 Sum_probs=139.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
..+.+||+++|++++|||||++++....+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 35679999999999999999999999999888888888888888888888889999999999999998899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++|||++++.+++.+..|+..+......+.|+++|+||+|+ ...+.+..+++++++++++++|+++||++|.||
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 156 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL-AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999998887766668999999999999 445567788999999999999999999999885
No 53
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=193.22 Aligned_cols=151 Identities=38% Similarity=0.592 Sum_probs=133.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
..+||+++|.+++|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 468999999999999999999999998888888876544 4667788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|||++++++|+.+..|+..+.+.. ..+.|+++|+||.|+ .....+..+++..+++.++++|+++||++|.||
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl-~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi 155 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDL-DSERQVSTGEGQELAKSFGIPFLETSAKQRVNV 155 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc-ccccccCHHHHHHHHHHhCCEEEEeeCCCCCCH
Confidence 999999999999999999887653 347899999999998 445566777888999999999999999999985
No 54
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.5e-33 Score=188.57 Aligned_cols=150 Identities=35% Similarity=0.602 Sum_probs=131.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
++||+++|.+++|||||++++..+.+...+.++.+ +.....+..++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999999888777765 55667778888888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
||++++.+++++..|+..+.+.. ..+.|+++|+||+|+. ....+...++..+++.++++++++||++|.|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE-SEREVSSAEGRALAEEWGCPFMETSAKSKTMV 151 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch-hcCccCHHHHHHHHHHhCCEEEEecCCCCCCH
Confidence 99999999999999998887643 3578999999999984 34556667788899888999999999999875
No 55
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=9e-34 Score=194.24 Aligned_cols=148 Identities=32% Similarity=0.568 Sum_probs=129.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 96 (166)
||+++|.+++|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||++|+++|..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999999887778776443 3556778888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 97 VTDESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~---~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++++++++.+..|+..+.... ..+.|+++|+||+|+. ....+...++.++++.++++|+++||++|.||
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v 151 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV-YEREVSTEEGAALARRLGCEFIEASAKTNVNV 151 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc-ccCccCHHHHHHHHHHhCCEEEEecCCCCCCH
Confidence 999999999999998886643 2478999999999994 44567777888999999999999999999985
No 56
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=3.3e-33 Score=187.63 Aligned_cols=147 Identities=29% Similarity=0.647 Sum_probs=129.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++++|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++++..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999998888888888887777777777888899999999999999988889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++++++.+..|+..+.+... +.|+++|+||+|+.. ..+. .+..++++..++.++++||++|+||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~--~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v 147 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD--RKVK-AKQITFHRKKNLQYYEISAKSNYNF 147 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc--ccCC-HHHHHHHHHcCCEEEEEeCCCCCCh
Confidence 99999999999999999987765 899999999999952 2222 3456777778899999999999986
No 57
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.4e-33 Score=191.98 Aligned_cols=149 Identities=28% Similarity=0.550 Sum_probs=128.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
.||+++|++|+|||||+++|..+.+...+.++.+..+. ..+..++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999998888888775544 55667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCc-----------ccchHHHHHHHHHhC-CeEEEEeccc
Q 031083 96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKR-----------AVPTAKGQELADEYG-IKFFETVSMF 162 (166)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (166)
|++++++|+.+. .|+..+.... .+.|+++|+||+|+..... .+..+++.++++..+ ++|++|||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 5888887654 4799999999999944321 356677888998887 7999999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
|.||
T Consensus 159 ~~~v 162 (189)
T cd04134 159 NRGV 162 (189)
T ss_pred CCCH
Confidence 9986
No 58
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.5e-33 Score=192.28 Aligned_cols=149 Identities=27% Similarity=0.456 Sum_probs=121.2
Q ss_pred eeeEEEEcCCCCcHHHHHH-HHhcC-----CCCCCcccccee-EeEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 031083 15 LIKLLLIGDSGVGKSCLLL-RFSDD-----SFTTSFITTIGI-DFKIRT--------IELDGKRIKLQIWDTAGQERFRT 79 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~-~l~~~-----~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 79 (166)
.+||+++|..++|||||+. ++.++ .+...+.||.+. +.+... ..+++..+.+.+||++|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 56554 345667777642 222222 25688899999999999875 3
Q ss_pred ccccccccccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------------Ccccc
Q 031083 80 ITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES------------------KRAVP 140 (166)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~------------------~~~~~ 140 (166)
....+++++|++|+|||+++++||+.+. .|+..+.... .+.|+++||||+||... .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566889999999999999999999997 5888876655 47899999999999531 46788
Q ss_pred hHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 141 TAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
.+++++++++++++|+||||++|+||
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V 184 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGV 184 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCH
Confidence 99999999999999999999999986
No 59
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.4e-33 Score=188.05 Aligned_cols=149 Identities=31% Similarity=0.485 Sum_probs=128.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999999888778776433 455666777889999999999999988888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~---~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++++++.+..|+..+.+.. ..+.|+++|+||+|+. ..+.+..+++..++..+++.|+++||++|+||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v 153 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES-HKREVSSNEGAACATEWNCAFMETSAKTNHNV 153 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc-ccCeecHHHHHHHHHHhCCcEEEeecCCCCCH
Confidence 9999999999999988776643 2578999999999993 34556677888899999999999999999985
No 60
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5.2e-35 Score=186.82 Aligned_cols=157 Identities=34% Similarity=0.682 Sum_probs=147.3
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
...+.+.+|++++|...+|||||+-++..++|......|.-..+..+.+.+.++...+.|||+.|+++|+.+-+-||++.
T Consensus 7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS 86 (218)
T KOG0088|consen 7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS 86 (218)
T ss_pred ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence 34567889999999999999999999999999888887777778888899999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++.++|||++|++||+.++.|..++.......+-++||+||+|| ++++++..++++.++..-|+.|+++||+.+.++
T Consensus 87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDL-EeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi 163 (218)
T KOG0088|consen 87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDL-EEERQVTRQEAEAYAESVGALYMETSAKDNVGI 163 (218)
T ss_pred CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccH-HHhhhhhHHHHHHHHHhhchhheecccccccCH
Confidence 99999999999999999999999999988888999999999999 889999999999999999999999999998874
No 61
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=3.2e-33 Score=186.52 Aligned_cols=150 Identities=39% Similarity=0.728 Sum_probs=136.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++++|||||++++++..+...+.++.+.++....+.+++..+++.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888888888888888888888889999999999999998999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++++++.+..|+..+......+.|+++++||+|+. +......++...+++..+++++++||++|+|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 150 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS-DKRQVSTEEGEKKAKELNAMFIETSAKAGHNV 150 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc-ccCccCHHHHHHHHHHhCCEEEEEeCCCCCCH
Confidence 99999999999999999877665579999999999984 45666778889999999999999999999885
No 62
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=2.9e-33 Score=192.58 Aligned_cols=150 Identities=22% Similarity=0.384 Sum_probs=125.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccc--------ccccccc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYYRG 87 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~ 87 (166)
+||+|+|.+++|||||++++.++.+...+.++.+.+++...+.+++..+.+.+||++|...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998888888877777677788888899999999997544221 2344789
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCcccchHHHHHHHH-HhCCeEEEEecccC
Q 031083 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADMDESKRAVPTAKGQELAD-EYGIKFFETVSMFN 163 (166)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 163 (166)
+|++|+|||+++++|++.+..|++.+.+.. ..+.|+++|+||+|+.. .+.+..++++.+++ .++++|++|||++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR-HRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc-cccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 999999999999999999999999887754 46799999999999944 45556667777765 56899999999999
Q ss_pred CCC
Q 031083 164 NEW 166 (166)
Q Consensus 164 ~~v 166 (166)
.||
T Consensus 160 ~~v 162 (198)
T cd04142 160 WHI 162 (198)
T ss_pred CCH
Confidence 986
No 63
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=3.5e-33 Score=188.14 Aligned_cols=147 Identities=46% Similarity=0.851 Sum_probs=131.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccc-cccccccccccEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILL 93 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~ 93 (166)
.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|++++. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999999988888888888887888889988999999999999886 477888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEeccc
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMF 162 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (166)
|||++++++++.+..|+..+.... ..+.|+++|+||+|+ ...+++..++++++++..+++|+++||++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDL-REQIQVPTDLAQRFADAHSMPLFETSAKD 150 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccc-hhhcCCCHHHHHHHHHHcCCcEEEEeccC
Confidence 999999999999999998887653 357999999999998 44566777888999999999999999999
No 64
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=4.1e-33 Score=186.40 Aligned_cols=150 Identities=55% Similarity=0.976 Sum_probs=135.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888889999999999999998999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++.+++.+..|+..+..+...+.|+++|+||+|+. ...++..+++++++++.+++++++||++|+|+
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 150 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE-DQRQVSREEAEAFAEEHGLPFFETSAKTNTNV 150 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc-cccCCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 99999999999999999887766689999999999983 34566778889999999999999999999874
No 65
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=1.2e-32 Score=186.13 Aligned_cols=149 Identities=30% Similarity=0.590 Sum_probs=129.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++|+|||||++++..+.+..++.++.. +.+...+.+++..+.+.+||++|++++..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999999999888888764 455567788888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CcccchHHHHHHHHHhCC-eEEEEeccc
Q 031083 96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETVSMF 162 (166)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (166)
|++++++|+.+. .|+..+.... .+.|+++|+||+|+... .+.+..+++..+++..++ .|+++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999985 5777776543 46899999999999542 456778889999999997 999999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
|.||
T Consensus 159 ~~~v 162 (173)
T cd04130 159 QKNL 162 (173)
T ss_pred CCCH
Confidence 9986
No 66
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=8.9e-33 Score=184.66 Aligned_cols=146 Identities=32% Similarity=0.587 Sum_probs=127.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|.+++|||||++++..+.+.+.+.++.+.++....+..++..+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998887777776777667778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++.+++.+..|+..+.+.. .+.|+++|+||+|+... ..++...+++..+++++++||++|.|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gv 146 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS----VTQKKFNFAEKHNLPLYYVSAADGTNV 146 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh----HHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 9999999999999999987654 36899999999998321 234566778888899999999999885
No 67
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=5.9e-33 Score=185.86 Aligned_cols=149 Identities=40% Similarity=0.650 Sum_probs=129.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++|+|||||++++.++.+...+.++.+ +.+...+.+++..+.+.+||+||++++..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999988877777765 344566677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++++++.+..|+..+.+.. ..+.|+++|+||+|+. ..+.+..+++..+++..+++|+++||++|.|+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 150 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE-SERVVSTEEGKELARQWGCPFLETSAKERVNV 150 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccceEcHHHHHHHHHHcCCEEEEeecCCCCCH
Confidence 9999999999999988876643 3478999999999993 34556677888999999999999999999885
No 68
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=9.4e-33 Score=184.17 Aligned_cols=149 Identities=34% Similarity=0.606 Sum_probs=130.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999998888888776443 46667788888899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
||++++.+++.+..|+..+.+.. ..+.|+++|+||+|+.. ..+...++.++++..+++++++||++|.|+
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 150 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVSSRQGQDLAKSYGIPYIETSAKTRQGV 150 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc--ceecHHHHHHHHHHhCCeEEEecCCCCCCH
Confidence 99999999999999998887654 34789999999999843 455677888999999999999999999985
No 69
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.2e-32 Score=184.04 Aligned_cols=151 Identities=46% Similarity=0.810 Sum_probs=135.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
.+||+++|++++|||||++++.++.+...+.++.+..+....+.+++..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998887788887777778888898899999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
||++++++++.+..|+..+........|+++++||+|+.. ......+++..++...++.++++||++|.|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES-KRQVSTEEAQEYADENGLLFFETSAKTGENV 151 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cCcCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 9999999999999999999887666899999999999843 4556777888999999999999999999885
No 70
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-35 Score=189.31 Aligned_cols=155 Identities=50% Similarity=0.953 Sum_probs=142.4
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEE---------CCeEEEEEEEeCCCcccccccc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL---------DGKRIKLQIWDTAGQERFRTIT 81 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~D~~g~~~~~~~~ 81 (166)
..++.+|++.+|++|+|||+++.++..+.|......|.++++..+.+.+ .+.++.+.+||+.|+++|+++.
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 3567789999999999999999999999999999999999998888776 3345789999999999999999
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEec
Q 031083 82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
..+++++-+++++||+++..||-+++.|+.++.-+ ...+..|++++||+|| ++.+.++.+++.++|+++|+||||+||
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL-~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADL-EDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccch-hhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 99999999999999999999999999999999663 3567889999999999 888999999999999999999999999
Q ss_pred ccCCCC
Q 031083 161 MFNNEW 166 (166)
Q Consensus 161 ~~~~~v 166 (166)
-+|.||
T Consensus 164 ~tg~Nv 169 (219)
T KOG0081|consen 164 CTGTNV 169 (219)
T ss_pred ccCcCH
Confidence 999986
No 71
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=1e-32 Score=183.71 Aligned_cols=144 Identities=22% Similarity=0.393 Sum_probs=121.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++|+|||||++++..+.|...+.++.+ . +...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~-~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-R-FKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-c-eEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999999999999888776655432 3 346788899889999999999874 24567899999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CCcccchHHHHHHHHHhC-CeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDE-SKRAVPTAKGQELADEYG-IKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~~K~Dl~~-~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 166 (166)
|+++++||+++..|+..+..... .+.|+++||||.|+.. ..+.+..+++++++++.+ +.|++|||++|.||
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i 147 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNV 147 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCH
Confidence 99999999999999999977643 5789999999999843 356778888999998874 89999999999986
No 72
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=9.9e-33 Score=188.56 Aligned_cols=149 Identities=28% Similarity=0.589 Sum_probs=126.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
+||+++|++++|||||++++.++.+...+.++.+.++. ..+... +..+.+.+||++|++++..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 58999999999999999999999998888888766554 345554 6778999999999999999999999999999999
Q ss_pred EECCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCC---CcccchHHHHHHHHHhCC-eEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADMDES---KRAVPTAKGQELADEYGI-KFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~piivv~~K~Dl~~~---~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 166 (166)
||++++++|+.+.. |+..+.... .+.|+++|+||.|+... ...+..++++++++.+++ +++++||++|.||
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 155 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENV 155 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCH
Confidence 99999999999964 776665443 47899999999999443 234667889999999998 9999999999986
No 73
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.7e-32 Score=183.44 Aligned_cols=150 Identities=38% Similarity=0.575 Sum_probs=130.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
.+||+++|++++|||||++++.++.+...+.++.+.. ......+++..+.+.+||+||++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4799999999999999999999988877777776633 345567888888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
||++++.+++.+..|+..+.+. ...+.|+++++||+|+. ....+..+++.++++..+++++++||++|.||
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 152 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE-HQRKVSREEGQELARKLKIPYIETSAKDRLNV 152 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc-ccceecHHHHHHHHHHcCCcEEEeeCCCCCCH
Confidence 9999999999999999888764 33578999999999993 34456677888999999999999999999985
No 74
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-33 Score=177.45 Aligned_cols=156 Identities=46% Similarity=0.855 Sum_probs=148.7
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
....+.+|.+++|+-|+|||+|++.+..++|...-..+++.++..+.+.+.+.++++.+||+.|+++|+.....+++.+.
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaa 85 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 85 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 44678899999999999999999999999998888888999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+.++|||++.+.++..+..|+..-....++++-|++++||.|| +.++.+..+|+++|+.++|+.|.++||++|+||
T Consensus 86 galmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadl-e~qrdv~yeeak~faeengl~fle~saktg~nv 161 (215)
T KOG0097|consen 86 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL-ESQRDVTYEEAKEFAEENGLMFLEASAKTGQNV 161 (215)
T ss_pred ceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhh-hhcccCcHHHHHHHHhhcCeEEEEecccccCcH
Confidence 9999999999999999999999998888889999999999999 889999999999999999999999999999997
No 75
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=2.4e-32 Score=187.54 Aligned_cols=150 Identities=33% Similarity=0.618 Sum_probs=131.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCC-CccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
+||+++|++++|||||+++|.++.+.. .+.++.+..+....+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998874 5777887777777888999999999999999999999898999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---CcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES---KRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
||++++.+++.+..|+..+.... .+.|+++|+||+|+.+. ..++..+++.+++..++++++++||++|+||
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 154 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNV 154 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 99999999999999998886643 37899999999998442 2355667788999999999999999999885
No 76
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.2e-32 Score=189.40 Aligned_cols=142 Identities=25% Similarity=0.601 Sum_probs=127.0
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCCh
Q 031083 21 IGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE 100 (166)
Q Consensus 21 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 100 (166)
+|.+++|||||++++..+.+...+.+|.+.++....+.+++..+.+.+||++|+++|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888899998888888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 101 SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 101 ~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
.||+.+..|+..+.+.. .++|+++||||+|+.. ..+..+ ...+++..++.|++|||++|.||
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~--~~v~~~-~~~~~~~~~~~~~e~SAk~~~~v 142 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD--RKVKAK-SITFHRKKNLQYYDISAKSNYNF 142 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc--ccCCHH-HHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999998765 4799999999999843 334433 34788888999999999999986
No 77
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=3.2e-32 Score=182.26 Aligned_cols=149 Identities=30% Similarity=0.630 Sum_probs=129.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC--CCCCCccccceeEeEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD--SFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
+||+++|++++|||||++++..+ .+...+.++.+.++....+.++ +..+++.+||++|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999864 6788888888888777777664 56789999999999998888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+ .+..++...+++.++..++++++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 152 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDL-ADKAEVTDAQAQAFAQANQLKFFKTSALRGVGY 152 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccc-ccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCh
Confidence 9999999999999999998887664 46899999999998 344556666777888888999999999999885
No 78
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=3.5e-32 Score=183.78 Aligned_cols=147 Identities=31% Similarity=0.641 Sum_probs=127.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEEC
Q 031083 18 LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 97 (166)
|+++|++++|||||++++..+.+...+.++.... +...+..++..+.+.+||++|++.|..++..+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 5899999999999999999999988888776544 445677788889999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CcccchHHHHHHHHHhCC-eEEEEecccCC
Q 031083 98 TDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETVSMFNN 164 (166)
Q Consensus 98 ~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (166)
+++++|+.+. .|+..+.... .+.|+++|+||+|+... ...+..++++++++..++ .|+++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 5888776654 47999999999999432 123677888999999996 99999999999
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
||
T Consensus 159 ~v 160 (174)
T smart00174 159 GV 160 (174)
T ss_pred CH
Confidence 85
No 79
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=9.1e-32 Score=179.57 Aligned_cols=149 Identities=50% Similarity=0.925 Sum_probs=132.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++++|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888778888887777777778888899999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++++++.+..|++.+.+.. ..+.|+++|+||+|+. ......++..+++++.+++++++||++|.|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 150 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE--NREVTREEGLKFARKHNMLFIETSAKTRDGV 150 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc--ccccCHHHHHHHHHHcCCEEEEEecCCCCCH
Confidence 9999999999999999887754 4578999999999984 3445667889999999999999999999885
No 80
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=3.4e-32 Score=192.63 Aligned_cols=149 Identities=24% Similarity=0.412 Sum_probs=129.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|.+++|||||++++.++.+...+.+|.+ ++....+.+++..+.+.|||++|++.|..++..++.++|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888876 566677888898999999999999999888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh---------cCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHH-hCCeEEEEecccCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQH---------AADNVNKILVGNKADMDESKRAVPTAKGQELADE-YGIKFFETVSMFNNE 165 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~---------~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~ 165 (166)
|+++++||+++..|++.+... ...+.|+++|+||+|+.. ...+..+++.+++.. .++.++++||++|.|
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~-~~~v~~~ei~~~~~~~~~~~~~evSAktg~g 158 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF-PREVQRDEVEQLVGGDENCAYFEVSAKKNSN 158 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh-ccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence 999999999999999888653 234789999999999943 455677788887764 468999999999988
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
+
T Consensus 159 I 159 (247)
T cd04143 159 L 159 (247)
T ss_pred H
Confidence 5
No 81
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=8.1e-32 Score=179.65 Aligned_cols=150 Identities=38% Similarity=0.748 Sum_probs=132.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++++|||||+++++++.+...+.++.+.......+...+..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887777777766676677777788889999999999999988998999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++++++.+..|+..+.+....+.|+++|+||+|+. ...++..++++++++..+++++++||++|+|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi 150 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE-RQRVVSKSEAEEYAKSVGAKHFETSAKTGKGI 150 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999887766688999999999994 44556677888899999999999999999875
No 82
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=1.2e-31 Score=181.09 Aligned_cols=149 Identities=30% Similarity=0.608 Sum_probs=127.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++++|||||++++..+.+...+.++.. +.....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999999888777765 344456778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------cccchHHHHHHHHHhCC-eEEEEeccc
Q 031083 96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFETVSMF 162 (166)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (166)
|++++.+|+.+. .|...+... ..+.|+++|+||+|+.+.. ..+..++++.+++.+++ +|++|||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999986 466666554 5689999999999984332 25667889999999996 799999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
|.||
T Consensus 159 ~~gi 162 (174)
T cd04135 159 QKGL 162 (174)
T ss_pred CCCH
Confidence 9986
No 83
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=4.8e-32 Score=182.46 Aligned_cols=151 Identities=23% Similarity=0.316 Sum_probs=129.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
...+||+++|.+|+|||||++++.++.+. ..+.+|.+..+....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 45799999999999999999999999998 88889888777777788888888999999999999988899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-eEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 166 (166)
++|||++++.+++.+..|+..+.. ..+.|+++|+||.|+.+ .......+.+++++.+++ .++++||++|+||
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDE-QQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSS 154 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccc-cccccccCHHHHHHHcCCCCCEEEEeccCccH
Confidence 999999999999999888886643 23689999999999943 333334566788888887 4799999999885
No 84
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.9e-31 Score=185.55 Aligned_cols=153 Identities=48% Similarity=0.812 Sum_probs=129.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
....+||+++|++++|||||+++|.+..+ ..+.++.+.++....+..++..+.+.+||+||++++..++..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 35679999999999999999999998876 45677777777777788888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHH-HHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWM-RNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~-~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++|||++++++|+.+..+| ..+.... ..+.|+++|+||+|+. ....+..++...+++..++.|+++||++|.||
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~-~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE-SERDVSREEGMALAKEHGCLFLECSAKTRENV 165 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccCccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999998754 4443332 2467999999999994 34556778888899999999999999999875
No 85
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=1.7e-31 Score=179.64 Aligned_cols=150 Identities=35% Similarity=0.608 Sum_probs=130.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
++||+++|.+|+|||||++++.++.+...+.++.+. .....+.+++..+.+.+||++|+++|..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 378999999999999999999999988887887764 3456677888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC-CeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 166 (166)
||++++++++.+..|...+.+.. ..+.|+++++||.|+. ..+.+..+++..+++.++ ++++++||++|.|+
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i 152 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE-DDRQVSREDGVSLSQQWGNVPFYETSARKRTNV 152 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc-ccCccCHHHHHHHHHHcCCceEEEeeCCCCCCH
Confidence 99999999999999988887643 3579999999999993 445566777888889988 79999999999885
No 86
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=5.7e-32 Score=181.36 Aligned_cols=148 Identities=36% Similarity=0.537 Sum_probs=124.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccc-ccccccccccccEEEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-RTITTAYYRGAMGILLVY 95 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~d~~i~v~ 95 (166)
||+++|++++|||||++++..+.+...+.++.... ....+.+++..+.+.+||+||++.+ ......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 68999999999999999999988877777766433 3456678888899999999998853 344667888999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCC-CC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHA--ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNN-EW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~--~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v 166 (166)
|++++.+|+.+..|+..+.... ..+.|+++|+||+|+ .....+..+++..+++..+++|+++||++|. ||
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl-~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v 152 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADL-LHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGV 152 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCch-HHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhH
Confidence 9999999999999998887654 347999999999998 4445677788999999999999999999984 54
No 87
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.3e-31 Score=178.15 Aligned_cols=153 Identities=46% Similarity=0.848 Sum_probs=134.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
.+.++|+++|++|+|||||++++..+.+.+.+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999988888877888887788788888888889999999999999988889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|||++++++++.+..|+..+......+.|+++|+||+|+. ...++..+..+.+.+....+++++||++|.|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~-~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv 157 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA-ERREVSQQRAEEFSDAQDMYYLETSAKESDNV 157 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-cccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence 99999999999999999988877666679999999999983 34555566677888888889999999999885
No 88
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=2.4e-31 Score=179.21 Aligned_cols=150 Identities=41% Similarity=0.738 Sum_probs=131.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++++|||||++++.+..+...+.++.+.++....+.+++..+++.+||+||++.+..++..+++++|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888887787788888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC-CeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~----~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 166 (166)
|++++.+++.+..|.+.+..... .+.|+++|+||+|+.. ......++.+.+++..+ .+++++||++|.|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 155 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE-KRQVSTKKAQQWCQSNGNIPYFETSAKEAINV 155 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCceEEEEECCCCCCH
Confidence 99999999999888887655432 3789999999999943 44556777888888887 79999999999985
No 89
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=2.8e-31 Score=185.62 Aligned_cols=148 Identities=27% Similarity=0.415 Sum_probs=125.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccc-cccEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR-GAMGILL 93 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~ 93 (166)
+||+++|++|+|||||++++..+.+. ..+.++.+.+++...+.+++..+.+.+||++|++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 6666666556777788888888999999999987 223345566 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|||++++.+|+.+..|+..+.+.. ..+.|+++|+||+|+. ....+..+++++++..++++|+++||++|.||
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~-~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv 151 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA-RSREVSVQEGRACAVVFDCKFIETSAGLQHNV 151 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc-ccceecHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 999999999999999999887654 3579999999999993 44567778888999999999999999999986
No 90
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=6e-34 Score=177.29 Aligned_cols=146 Identities=49% Similarity=0.904 Sum_probs=136.5
Q ss_pred EEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECC
Q 031083 20 LIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98 (166)
Q Consensus 20 v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 98 (166)
++|++++|||+|+-++..+.|. ....+|.++++..+.+.+++.++++.+||+.||++|++....+++++|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999999988774 455678899999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 99 DESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 99 ~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+..||++.+.|+.++.++....+.+.+++||+|+ ..++.+..++.+.+++.+++||+|+||+||-||
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~-a~er~v~~ddg~kla~~y~ipfmetsaktg~nv 148 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDL-AHERAVKRDDGEKLAEAYGIPFMETSAKTGFNV 148 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhcccccc-chhhccccchHHHHHHHHCCCceeccccccccH
Confidence 9999999999999999988888999999999999 666788889999999999999999999999886
No 91
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=5.6e-31 Score=174.60 Aligned_cols=150 Identities=53% Similarity=0.952 Sum_probs=135.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++++|||||++++.+..+...+.++.+.++....+..++....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888888888888888888899999999999998888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++++++.+..|+..+........|+++++||+|+. .......+++++++...+.+++++||++|.++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 150 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE-DQRQVSTEEAQQFAKENGLLFFETSAKTGENV 150 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc-ccccccHHHHHHHHHHcCCeEEEEecCCCCCH
Confidence 99999999999999999888765678999999999984 34556778899999999999999999999875
No 92
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.98 E-value=3.8e-32 Score=182.44 Aligned_cols=152 Identities=34% Similarity=0.660 Sum_probs=137.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
...+|++++|++.+|||+|+-.+..+.|+.+|.||.. +-+...+.++ ++.+.+.+|||.||+.|..++..-+.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999997 6777888995 9999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------cccchHHHHHHHHHhC-CeEEEE
Q 031083 92 LLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYG-IKFFET 158 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~ 158 (166)
++||++.+++||+++. +|+.++.++++ ++|+++||+|.||+.+. ..+..++++.+++++| ..|+||
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 9999999999999975 79898888874 89999999999996432 2467899999999999 589999
Q ss_pred ecccCCCC
Q 031083 159 VSMFNNEW 166 (166)
Q Consensus 159 Sa~~~~~v 166 (166)
||++++||
T Consensus 160 Sa~tq~~v 167 (198)
T KOG0393|consen 160 SALTQKGV 167 (198)
T ss_pred hhhhhCCc
Confidence 99999875
No 93
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.98 E-value=1.2e-30 Score=176.48 Aligned_cols=150 Identities=32% Similarity=0.638 Sum_probs=126.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
+.||+++|++++|||||++++.++.+...+.++.+..+. ..+.+++..+.+.+||++|++.+...+..++.++|++++|
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 468999999999999999999999998888887764443 5667788888999999999999998888889999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CcccchHHHHHHHHHhCC-eEEEEecc
Q 031083 95 YDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETVSM 161 (166)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (166)
||++++++++.+. .|...+.+.. .+.|+++|+||.|+... ...+..++++++++..+. ++++|||+
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999886 4666665543 47899999999998432 123456788999998885 89999999
Q ss_pred cCCCC
Q 031083 162 FNNEW 166 (166)
Q Consensus 162 ~~~~v 166 (166)
+|.||
T Consensus 159 ~~~~v 163 (175)
T cd01870 159 TKEGV 163 (175)
T ss_pred cCcCH
Confidence 99885
No 94
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.98 E-value=7.3e-31 Score=180.52 Aligned_cols=148 Identities=21% Similarity=0.386 Sum_probs=126.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEEC-----CeEEEEEEEeCCCccccccccccccccccE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-----GKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
+||+++|.+++|||||++++.++.+...+.+|.+.++..+.+.++ +..+.+.+||++|+++|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999999889998887777777664 567899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-------------------CCCCcEEEEEeCCCCCCCCcccchH----HHHHH
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQHA-------------------ADNVNKILVGNKADMDESKRAVPTA----KGQEL 147 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~piivv~~K~Dl~~~~~~~~~~----~~~~~ 147 (166)
+|+|||+++++|++++..|+.++.+.. ..++|++|||||.|+.+ .+.+..+ ....+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~-~r~~~~~~~~~~~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP-EKESSGNLVLTARGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh-hcccchHHHhhHhhhH
Confidence 999999999999999999999986531 24789999999999933 3333333 35568
Q ss_pred HHHhCCeEEEEecccCC
Q 031083 148 ADEYGIKFFETVSMFNN 164 (166)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~ 164 (166)
+++++++..+.++....
T Consensus 160 a~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 160 AEQGNAEEINLNCTNGR 176 (202)
T ss_pred HHhcCCceEEEecCCcc
Confidence 89999999888887543
No 95
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.98 E-value=4e-31 Score=180.69 Aligned_cols=151 Identities=38% Similarity=0.595 Sum_probs=139.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
..+||+++|.+|+|||+|..++..+.|...|+||.+ +.+.+.+.+++..+.+.|+|++|++++..+...+++..|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999998 6777888999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
||+++++.||+.+..+++.+.+. ...++|+++||||+|+ ...+.+..++++.+++.++|+|+|+||+.+.||
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl-~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v 153 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDL-ERERQVSEEEGKALARSWGCAFIETSAKLNYNV 153 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccc-hhccccCHHHHHHHHHhcCCcEEEeeccCCcCH
Confidence 99999999999999999999553 3457899999999999 556899999999999999999999999998765
No 96
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=3.6e-30 Score=171.32 Aligned_cols=148 Identities=36% Similarity=0.630 Sum_probs=130.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 96 (166)
||+++|++++|||||++++.+..+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999999888888777776 5556667777778899999999999888888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 97 VTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+++++++..+..|+..+.+... ...|+++|+||+|+.. ......+++.++++.++++++++||++|.|+
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 149 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN-ERQVSKEEGKALAKEWGCPFIETSAKDNINI 149 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc-cceecHHHHHHHHHHcCCcEEEeccCCCCCH
Confidence 9999999999999999877654 5799999999999944 4566778899999999999999999999875
No 97
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=1e-29 Score=171.05 Aligned_cols=149 Identities=33% Similarity=0.664 Sum_probs=124.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++++|||||+++|.++.+...+.++.. +........++..+.+.+||+||++.+...+...++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999998777777665 344456677888899999999999988888888889999999999
Q ss_pred ECCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCc----------ccchHHHHHHHHHhCC-eEEEEecccC
Q 031083 96 DVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADMDESKR----------AVPTAKGQELADEYGI-KFFETVSMFN 163 (166)
Q Consensus 96 d~~~~~s~~~~~~-~~~~~~~~~~~~~piivv~~K~Dl~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (166)
|++++.++..+.. |+..+.... .+.|+++|+||+|+..... .+..+++.+++...++ +|+++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999999988765 555555544 3799999999999954432 3457788889999997 9999999999
Q ss_pred CCC
Q 031083 164 NEW 166 (166)
Q Consensus 164 ~~v 166 (166)
+|+
T Consensus 159 ~gi 161 (171)
T cd00157 159 EGV 161 (171)
T ss_pred CCH
Confidence 875
No 98
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=8.1e-30 Score=174.23 Aligned_cols=150 Identities=32% Similarity=0.596 Sum_probs=125.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
+.||+++|++|+|||||++++..+.+...+.++....+ ...+..++..+.+.+||++|++.+......++.++|+++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 46999999999999999999998888777777665443 35667788888999999999998887777788999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC---------CcccchHHHHHHHHHhCC-eEEEEecccC
Q 031083 95 YDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES---------KRAVPTAKGQELADEYGI-KFFETVSMFN 163 (166)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (166)
||++++++++.+. .|+..+.++.+ +.|+++|+||+|+.+. .+.+..+++..+++.+++ +||+|||++|
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999997 57777766544 6999999999998432 234556788999999995 8999999999
Q ss_pred CCC
Q 031083 164 NEW 166 (166)
Q Consensus 164 ~~v 166 (166)
.||
T Consensus 159 ~~v 161 (187)
T cd04129 159 EGV 161 (187)
T ss_pred CCH
Confidence 986
No 99
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.1e-29 Score=169.70 Aligned_cols=149 Identities=36% Similarity=0.589 Sum_probs=128.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++|+|||||++++....+...+.++... ........++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 58999999999999999999999888777777653 34456677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.. ......++...+++.++++++++||++|+|+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 150 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED-KRQVSSEEAANLARQWGVPYVETSAKTRQNV 150 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEeeCCCCCCH
Confidence 9999999999999998887753 34799999999999944 3445667788889999999999999999985
No 100
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=7.4e-30 Score=175.91 Aligned_cols=149 Identities=29% Similarity=0.477 Sum_probs=125.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 96 (166)
||+++|.+|+|||||++++..+.+...+.++.. +.....+.+++..+.+.+||++|+..+..++..++.++|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999998877777664 4555677888888899999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcccchHHHHHHHH-HhCCeEEEEecccCCCC
Q 031083 97 VTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELAD-EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v 166 (166)
++++.+++.+..|+..+..... .+.|+++|+||+|+......+..++..+... .++++++++||++|.||
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 151 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENV 151 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCH
Confidence 9999999999999988876543 4799999999999955445555555555443 45689999999999985
No 101
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=2.4e-30 Score=174.01 Aligned_cols=145 Identities=21% Similarity=0.412 Sum_probs=114.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
..+||+++|.+++|||||++++..+.+. .+.+|.+.++. .+.. ..+.+.+||++|+++++.++..+++++|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999987764 35666665443 3333 34789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHH-----hCCeEEEEecccCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELADE-----YGIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v 166 (166)
|||++++.+++++..|+..+.. ....+.|++||+||+|+.. .+..++++++++. ....++++||++|+||
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv 158 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD---AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 158 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc---CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCCh
Confidence 9999999999999888877654 2234789999999999843 2345666665432 2347899999999986
No 102
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=6.9e-31 Score=176.03 Aligned_cols=139 Identities=21% Similarity=0.336 Sum_probs=114.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEEC
Q 031083 18 LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 97 (166)
|+++|++++|||||++++.++.+...+.++.+... . .+++..+.+.+||++|++++..++..+++++|++++|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~--~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--V--AIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--E--EEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999999888888888876432 2 3344568899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccch----HHHHHHHHHhCCeEEEEeccc
Q 031083 98 TDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPT----AKGQELADEYGIKFFETVSMF 162 (166)
Q Consensus 98 ~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~ 162 (166)
+++.++..++.|+..+.... .+.|+++|+||.|+... +.+.. .++..++++.++.++++||++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~ 144 (164)
T cd04162 78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAA-RSVQEIHKELELEPIARGRRWILQGTSLDD 144 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCC-CCHHHHHHHhCChhhcCCCceEEEEeeecC
Confidence 99999999999988886543 57999999999999433 32221 235667777788999999998
No 103
>PLN00023 GTP-binding protein; Provisional
Probab=99.97 E-value=2.7e-29 Score=180.96 Aligned_cols=145 Identities=23% Similarity=0.467 Sum_probs=125.3
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECC-------------eEEEEEEEeCCCcc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG-------------KRIKLQIWDTAGQE 75 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~g~~ 75 (166)
..++...+||+++|..++|||||+++|.++.+...+.+|.+.++..+.+.+++ ..+.+.|||++|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 45567789999999999999999999999999888899998888777777642 46889999999999
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCCCC--cc---
Q 031083 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA------------DNVNKILVGNKADMDESK--RA--- 138 (166)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piivv~~K~Dl~~~~--~~--- 138 (166)
+|+.++..++++++++|+|||++++.+++.+..|++.+..... .++|++|||||+||.... +.
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~ 174 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG 174 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence 9999999999999999999999999999999999999977531 258999999999994432 12
Q ss_pred cchHHHHHHHHHhCC
Q 031083 139 VPTAKGQELADEYGI 153 (166)
Q Consensus 139 ~~~~~~~~~~~~~~~ 153 (166)
+..++++++|+++++
T Consensus 175 ~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 175 NLVDAARQWVEKQGL 189 (334)
T ss_pred ccHHHHHHHHHHcCC
Confidence 367899999999984
No 104
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=7.6e-29 Score=172.90 Aligned_cols=152 Identities=30% Similarity=0.585 Sum_probs=131.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
.....+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++++..++..++.++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 34566999999999999999999999989988899999988888778788889999999999999998888889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+++|||+++..++..+..|+..+.... .+.|+++++||+|+.+ ..+. .+...+++..++.++++||++|.||
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~--~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD--RQVK-ARQITFHRKKNLQYYDISAKSNYNF 156 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc--ccCC-HHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999999887654 4789999999999833 2222 3345678888899999999999875
No 105
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=3.7e-29 Score=169.90 Aligned_cols=149 Identities=34% Similarity=0.575 Sum_probs=127.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
.||+++|.+|+|||||++++.++.+...+.++....+ ...+.+++..+.+.+||+||++++...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999988777777665433 456677777888999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|+++..+++.+..|+..+.+.. ..+.|+++|+||+|+.. ......++...+++.++++++++||++|.++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 151 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT-QRQVSTEEGKELAESWGAAFLESSARENENV 151 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh-cCccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 9999999999999998887653 35789999999999943 4455666778888888999999999999875
No 106
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.7e-29 Score=168.42 Aligned_cols=143 Identities=20% Similarity=0.423 Sum_probs=110.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|.+++|||||++++..+.+. .+.++.+... ..+... .+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999888776 4567666443 233443 478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHH-----HhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v 166 (166)
|++++++++.+..++..+.. ....+.|++|++||+|+... ...+++.+... ..++.++++||++|+||
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv 149 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGL 149 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCH
Confidence 99999999999988877743 23346899999999999332 22233222221 12346789999999986
No 107
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=4.5e-29 Score=167.50 Aligned_cols=148 Identities=26% Similarity=0.400 Sum_probs=113.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|.+++|||||++++..+.+...+..+.+ .. .....+.+..+.+.+||++|++.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999988765443322 22 233455667789999999999888777777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCccc-chHHHHHHHHHhC--CeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKRAV-PTAKGQELADEYG--IKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~-~~~~~~~~~~~~~--~~~~~~Sa~~~~~v 166 (166)
|++++++++.+. .|+..+..... +.|+++|+||+|+.+..... ..+++..++..++ .+++++||++|.||
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 152 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINV 152 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCH
Confidence 999999999986 46666665543 79999999999994433211 2333444555554 38999999999885
No 108
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=2.4e-29 Score=171.00 Aligned_cols=143 Identities=21% Similarity=0.460 Sum_probs=112.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
...+||+++|.+++|||||++++..+.+. .+.+|.+.+.. .+..+ .+.+.+||++|+++++.+|..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34589999999999999999999987775 45677665443 34443 478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC--------eEEEEecccC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI--------KFFETVSMFN 163 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~ 163 (166)
+|||+++++++..+..++..+.. ....+.|++||+||+|++.. .. ..++.+.+++ .++++||++|
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~---~~---~~~~~~~l~l~~~~~~~~~~~~~Sa~~g 163 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MN---AAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC---CC---HHHHHHHhCccccCCCceEEEeccCCCC
Confidence 99999999999998887776643 22347899999999999432 22 2344444443 3568999999
Q ss_pred CCC
Q 031083 164 NEW 166 (166)
Q Consensus 164 ~~v 166 (166)
+||
T Consensus 164 ~gv 166 (181)
T PLN00223 164 EGL 166 (181)
T ss_pred CCH
Confidence 986
No 109
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=2.1e-29 Score=170.20 Aligned_cols=149 Identities=19% Similarity=0.405 Sum_probs=117.0
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
......++|+++|++++|||||++++.+..+ ..+.++.+ +....+.+++ +.+.+||+||++.++..+..+++.+|
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d 83 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG--FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTD 83 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 3445668999999999999999999998754 34556555 3344555554 78999999999988888889999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHH-----HhCCeEEEEecccC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETVSMFN 163 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 163 (166)
++++|||++++.+++....|+..+.. ....+.|+++|+||+|+.+. ...++++++.+ ..+++++++||++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 160 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA---LSEEEIREALELDKISSHHWRIQPCSAVTG 160 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC---CCHHHHHHHhCccccCCCceEEEeccCCCC
Confidence 99999999999999998888877754 23357899999999999432 24455555553 23578999999999
Q ss_pred CCC
Q 031083 164 NEW 166 (166)
Q Consensus 164 ~~v 166 (166)
+|+
T Consensus 161 ~gi 163 (173)
T cd04154 161 EGL 163 (173)
T ss_pred cCH
Confidence 985
No 110
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=3.9e-29 Score=169.18 Aligned_cols=146 Identities=20% Similarity=0.396 Sum_probs=112.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
...+||+++|.+++|||||++++..+.+. .+.+|.+.++. .+..+ .+.+.+||++|++++..++..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 34699999999999999999999877774 45677665543 33343 478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHH-----HhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v 166 (166)
+|||++++++++++..|+..+.+ ....+.|++||+||.|+.+.. ..+++.+... ...+.++++||++|.||
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv 162 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM---KAAEITEKLGLHSIRDRNWYIQPTCATSGDGL 162 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC---CHHHHHHHhCccccCCCcEEEEEeeCCCCCCH
Confidence 99999999999999988887754 223478999999999994321 2233332221 12235778999999986
No 111
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=7.4e-29 Score=166.95 Aligned_cols=142 Identities=20% Similarity=0.378 Sum_probs=114.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 96 (166)
||+++|.+++|||||++++.+..+.. +.+|.+..+. .+.++ .+.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987654 5666654443 34443 4789999999999998889899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC------CeEEEEecccCCCC
Q 031083 97 VTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYG------IKFFETVSMFNNEW 166 (166)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v 166 (166)
++++++++++..|+..+.+. ...+.|++||+||+|+.. .+..++++++++..+ +.++++||++|.||
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 149 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGL 149 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCH
Confidence 99999999999998888653 234689999999999932 355666777664322 36889999999986
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=6.7e-29 Score=165.74 Aligned_cols=143 Identities=18% Similarity=0.398 Sum_probs=108.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC-CCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+|+++|++++|||||++++.+.. +...+.++.+... ..+.. ..+.+.+||+||++++..++..+++++|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999999875 3555667666432 23333 3478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCcccchHHHHHH---HH--HhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADMDESKRAVPTAKGQEL---AD--EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~---~~~~piivv~~K~Dl~~~~~~~~~~~~~~~---~~--~~~~~~~~~Sa~~~~~v 166 (166)
|++++.++..+..|+..+.+.. ..+.|+++|+||+|+.+... .+++... .. .....++++||++|.||
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~---~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv 152 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT---AVKITQLLGLENIKDKPWHIFASNALTGEGL 152 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC---HHHHHHHhCCccccCceEEEEEeeCCCCCch
Confidence 9999999988888887775432 24799999999999944322 2222222 11 12346899999999986
No 113
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=2e-28 Score=166.81 Aligned_cols=148 Identities=21% Similarity=0.416 Sum_probs=115.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
.+||+++|.+++|||||++++..+.+... .++.+.+.....+.. ++..+.+.+||++|++++..++..+++.+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 48999999999999999999998887644 566665555444443 3456889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHH------hCCeEEEEecccCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADE------YGIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~v 166 (166)
|||++++++++.+..|+..+.... ..+.|+++|+||+|+.. ....+++..+... .+++++++||++|+||
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN---ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc---cCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 999999999999888888775532 34789999999999843 2333444444431 1246899999999985
No 114
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=2.8e-28 Score=165.90 Aligned_cols=146 Identities=21% Similarity=0.414 Sum_probs=110.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
...+||+++|++++|||||++++..+.+.. +.+|.+.++. .+.. ..+.+.+||++|+++++.++..+++.+|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 345899999999999999999998877754 5566664433 3444 3478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHH-----HhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v 166 (166)
+|||++++++++.+..++..+.. ....+.|++||+||.|+++. ...+++..... ...+.++++||++|+||
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv 166 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA---MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGL 166 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC---CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCH
Confidence 99999999999998887777643 22346899999999998432 22222222111 11235679999999985
No 115
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=2.3e-28 Score=162.93 Aligned_cols=143 Identities=24% Similarity=0.455 Sum_probs=109.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 96 (166)
+|+++|++++|||||++++.++.+.. ..++.+.++ ..+..+ ..+.+.+||++|++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999988754 345555333 333333 34789999999999988888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHH------HHHHhCCeEEEEecccCCCC
Q 031083 97 VTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQE------LADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~~v 166 (166)
++++.++..+..|+..+.+. ...+.|+++|+||+|+... ...+++.. ++...++++++|||++|+||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 150 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA---LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGL 150 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC---cCHHHHHHHcCCcccCCCCcEEEEecccccCCCh
Confidence 99999999988888777543 2247899999999998432 12233322 22223457999999999986
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=1.1e-27 Score=162.00 Aligned_cols=145 Identities=21% Similarity=0.349 Sum_probs=111.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
..+||+++|++++|||||++++..+.+.. +.++.+..+ ..+.++ .+.+.+||+||++++...+..+++++|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 35899999999999999999999887764 456655433 344444 4789999999999999889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHH-HHHH----HHhCCeEEEEecccCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKG-QELA----DEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~v 166 (166)
|+|+++++++.....++..+.+.. ..+.|+++++||+|+.+. ...++. +.+. +..+++++++||++|+||
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi 164 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA---MTPAEISESLGLTSIRDHTWHIQGCCALTGEGL 164 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEecccCCCCCH
Confidence 999999999988887777765432 246899999999998432 223332 2222 234467999999999985
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=6.2e-28 Score=162.17 Aligned_cols=142 Identities=22% Similarity=0.380 Sum_probs=110.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 96 (166)
+|+++|++++|||||++++.+. +...+.++.+.. ...+..++ +.+.+||++|++.++.++..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 666777776643 34455544 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHH---HHHHHHHhC--CeEEEEecccC
Q 031083 97 VTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAK---GQELADEYG--IKFFETVSMFN 163 (166)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~---~~~~~~~~~--~~~~~~Sa~~~ 163 (166)
++++.+++.+..|+..+.+.. ..+.|+++|+||.|+..........+ ..+++++.+ +.+++|||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence 999999999999998886542 24789999999999944332211121 233443333 57888999998
No 118
>PTZ00099 rab6; Provisional
Probab=99.96 E-value=3.4e-27 Score=159.48 Aligned_cols=128 Identities=39% Similarity=0.697 Sum_probs=115.5
Q ss_pred CCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhc
Q 031083 38 DSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA 117 (166)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 117 (166)
+.|...+.+|.+.++....+.+++..+.+.|||++|++++..++..+++++|++|+|||++++++|+.+..|+..+.+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 46778889999989988888999999999999999999999999999999999999999999999999999999987765
Q ss_pred CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 118 ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 118 ~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
..+.|++||+||+|+ .....+..+++..+++.+++.|+++||++|.||
T Consensus 83 ~~~~piilVgNK~DL-~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV 130 (176)
T PTZ00099 83 GKDVIIALVGNKTDL-GDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNI 130 (176)
T ss_pred CCCCeEEEEEECccc-ccccCCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 567899999999999 344567888899999999999999999999986
No 119
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=6.9e-30 Score=166.55 Aligned_cols=155 Identities=32% Similarity=0.589 Sum_probs=144.3
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
...+..+|++++|..++||||+|++++.+-|+..+..+++.++....+.+.+.++++.+||+.|++++..+...|++.+.
T Consensus 15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred hhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence 34577899999999999999999999999999999999999999888999888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+.++||+-+|+.||+....|++.+..... .+|.++|-||+|+ -++.++...+++.+++..++.+|.+|++..-||
T Consensus 95 a~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDl-veds~~~~~evE~lak~l~~RlyRtSvked~NV 169 (246)
T KOG4252|consen 95 ASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDL-VEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV 169 (246)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchh-hHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 99999999999999999999999977665 7999999999999 556778889999999999999999999998876
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=4.8e-27 Score=160.83 Aligned_cols=146 Identities=22% Similarity=0.373 Sum_probs=115.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
.+..||+++|++++|||||++++.++.+. .+.++.+. ....+.+++ +.+.+||+||+..+...+..+++++|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999987764 45555443 334556665 67899999999988888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHH----------------hCCeE
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADE----------------YGIKF 155 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~ 155 (166)
+|+|++++.++.....++..+.+.. ..+.|+++++||+|+.. .+..++++++.+. ....+
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG---AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC---CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence 9999999999988888888775532 34689999999999843 3445666665543 22468
Q ss_pred EEEecccCCCC
Q 031083 156 FETVSMFNNEW 166 (166)
Q Consensus 156 ~~~Sa~~~~~v 166 (166)
++|||++|+||
T Consensus 169 ~~~Sa~~~~gv 179 (190)
T cd00879 169 FMCSVVKRQGY 179 (190)
T ss_pred EEeEecCCCCh
Confidence 99999999986
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=4.9e-27 Score=156.27 Aligned_cols=142 Identities=20% Similarity=0.419 Sum_probs=110.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 96 (166)
||+++|.+++|||||++++.++.+ ..+.++.+.. ...+.+.+ +.+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcc--eEEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999874 4445555533 34445543 689999999999999899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHH-----hCCeEEEEecccCCCC
Q 031083 97 VTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADE-----YGIKFFETVSMFNNEW 166 (166)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v 166 (166)
+++++++..+..|+..+.... ..+.|+++|+||+|+.... ..++..+.... ...+++++||++|.||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEKILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc---CHHHHHHhhChhhccCCcEEEEEeeCCCCCCH
Confidence 999999999988888775532 3578999999999984432 22333333322 3468999999999885
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=1.1e-27 Score=159.57 Aligned_cols=142 Identities=25% Similarity=0.425 Sum_probs=105.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 96 (166)
||+++|++++|||||++++..+.+.. +.++.+.+. ..+... .+.+.+||+||++.++..+..+++.+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998877643 445554333 333443 4789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCcccchHHHHH-HH----HHhCCeEEEEecccCCCC
Q 031083 97 VTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQE-LA----DEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v 166 (166)
++++.++.....++..+.+ ....+.|+++|+||+|+.... ...++.+ +. +..+.+++++||++|.||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL---SEAEISEKLGLSELKDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC---CHHHHHHHhCccccCCCcEEEEEeeccCCCCH
Confidence 9999888877766665533 223478999999999984322 1222222 11 122357999999999985
No 123
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.95 E-value=5.5e-27 Score=150.71 Aligned_cols=151 Identities=20% Similarity=0.393 Sum_probs=121.3
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
+..++.++|+++|..||||||++++|.+.. +....|+.+ +..+...+++ +++.+||.+|+...+..|..|++++|
T Consensus 11 k~kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestd 85 (185)
T KOG0073|consen 11 KLKEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTD 85 (185)
T ss_pred HhhhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccC
Confidence 445679999999999999999999999876 455566655 6777777755 88999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCcccc---hHHHHHHHHHhCCeEEEEecccCCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVP---TAKGQELADEYGIKFFETVSMFNNE 165 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (166)
++|+|+|.+|+..+++....++.+.. ..-...|+++++||.|++.+-.... .-+.+++++..+++++.||+.+|++
T Consensus 86 glIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~ 165 (185)
T KOG0073|consen 86 GLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGED 165 (185)
T ss_pred eEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence 99999999999999888776665532 2233679999999999953322211 1235667788889999999999976
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=1.6e-26 Score=156.31 Aligned_cols=147 Identities=27% Similarity=0.487 Sum_probs=117.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
.+..+||+++|+.+|||||+++++..+... ...||.+ +....+.+++ +.+.+||.+|+..++..|..++.++|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccc--cccceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 478899999999999999999999986543 3566665 4555666666 6799999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHH------HhCCeEEEEecccCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELAD------EYGIKFFETVSMFNN 164 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~ 164 (166)
|||+|.++++.+.+....+..+.. ....+.|++|++||.|+++. ...+++..... ...+.++.|||++|+
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~---~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~ 162 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA---MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE 162 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS---STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc---chhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence 999999999999998887777654 33357999999999998443 33444444332 223578999999999
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
||
T Consensus 163 Gv 164 (175)
T PF00025_consen 163 GV 164 (175)
T ss_dssp TH
T ss_pred CH
Confidence 85
No 125
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=9.5e-27 Score=156.17 Aligned_cols=143 Identities=22% Similarity=0.418 Sum_probs=109.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC------CCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
+|+++|++|+|||||++++..... ...+.++.+.++ ..+.+++ ..+.+||+||++.+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 689999999999999999976322 223344444333 4455554 689999999999999888899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHH-------hCCeEEEEeccc
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADE-------YGIKFFETVSMF 162 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~ 162 (166)
+++|+|+++++++.....|+..+.+. ...+.|+++++||+|+... ...+++.++.+. .+.+++++||++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 153 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA---LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC---CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence 99999999999999888888877553 2347899999999998432 333444444433 235899999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
|+|+
T Consensus 154 g~gv 157 (167)
T cd04160 154 GTGV 157 (167)
T ss_pred CcCH
Confidence 9985
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=8.2e-26 Score=154.07 Aligned_cols=146 Identities=18% Similarity=0.281 Sum_probs=111.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
+..++|+++|.+++|||||++++.++.+.. +.++.+. ....+.+++ +++.+||++|+..++..+..+++++|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP--TSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 456999999999999999999999876642 3444432 333444544 77899999999998889999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHH------------hCCeEEEEe
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADE------------YGIKFFETV 159 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~S 159 (166)
+|+|+++++++.....++..+.+. ...+.|+++|+||+|++. .++.+++.+.... ....+++||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~---~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S 166 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY---AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS 166 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC---CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence 999999999999888888776542 224789999999999843 2344444433210 124689999
Q ss_pred cccCCCC
Q 031083 160 SMFNNEW 166 (166)
Q Consensus 160 a~~~~~v 166 (166)
|++|.|+
T Consensus 167 a~~~~g~ 173 (184)
T smart00178 167 VVRRMGY 173 (184)
T ss_pred cccCCCh
Confidence 9999875
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=9.2e-26 Score=149.59 Aligned_cols=143 Identities=21% Similarity=0.439 Sum_probs=111.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 96 (166)
.|+++|++|+|||||++++.+..+...+.++.+.+.. .+..++ +.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3799999999999999999999998888888775554 334443 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHHH-----HHhCCeEEEEecccCCCC
Q 031083 97 VTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELA-----DEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v 166 (166)
+++++++.....++..+... ...+.|+++|+||+|+.+. .. .++..... ...+.+++++|+++|.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA-LS--VDELIEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC-cC--HHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence 99999998888877776542 2347899999999998432 11 12221111 122368999999999875
No 128
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=3.6e-25 Score=146.40 Aligned_cols=150 Identities=33% Similarity=0.465 Sum_probs=120.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
.+||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+.++++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999999988888888888888777788888778899999999999888888888999999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 95 YDVTDE-SSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|.... .++.... .|...+......+.|+++++||.|+.... ...+....+......+++++||++|.|+
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~gv 152 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIPLSAETGKNI 152 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch--hhHHHHHHHhhccCCceEEeecCCCCCH
Confidence 999886 6666655 66666655544478999999999994332 2233333344444578999999999875
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=3.2e-25 Score=150.34 Aligned_cols=143 Identities=23% Similarity=0.319 Sum_probs=103.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC-------CCCCcccc------ceeEeEEEE--EEE---CCeEEEEEEEeCCCccccc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS-------FTTSFITT------IGIDFKIRT--IEL---DGKRIKLQIWDTAGQERFR 78 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~-------~~~~~~~~------~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~~~~ 78 (166)
+|+++|.+++|||||+++|.+.. +...+.++ .+..+.... +.+ ++..+.+.+||+||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998732 11112111 122232222 222 5667889999999999998
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCe---E
Q 031083 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIK---F 155 (166)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~---~ 155 (166)
..+..+++.+|++|+|||+++..+++....|+... ..+.|+++|+||+|+.+.. ..+..+++++.++++ +
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~ 154 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD---PERVKQQIEDVLGLDPSEA 154 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC---HHHHHHHHHHHhCCCcccE
Confidence 88888999999999999999877666665554332 2367999999999984321 123345677777764 8
Q ss_pred EEEecccCCCC
Q 031083 156 FETVSMFNNEW 166 (166)
Q Consensus 156 ~~~Sa~~~~~v 166 (166)
+++||++|+||
T Consensus 155 ~~~Sa~~g~gi 165 (179)
T cd01890 155 ILVSAKTGLGV 165 (179)
T ss_pred EEeeccCCCCH
Confidence 99999999985
No 130
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=8.2e-25 Score=147.59 Aligned_cols=145 Identities=20% Similarity=0.400 Sum_probs=109.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
+....++|+++|++|+|||||++++.+..+. .+.++.+ +....+..++ ..+.+||++|+..+...+..+++.+|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g--~~~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQG--FNIKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCC--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 3345799999999999999999999987653 3445544 3334455555 678999999998888888888999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC--------eEEEEecc
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI--------KFFETVSM 161 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~ 161 (166)
+++|+|+++..++.....++..+.. ....+.|+++++||+|+.... +.+++.+.+++ +++++||+
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------~~~~i~~~l~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA------PAEEIAEALNLHDLRDRTWHIQACSAK 158 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC------CHHHHHHHcCCcccCCCeEEEEEeECC
Confidence 9999999999998888877766643 223478999999999984321 12334444442 47899999
Q ss_pred cCCCC
Q 031083 162 FNNEW 166 (166)
Q Consensus 162 ~~~~v 166 (166)
+|+|+
T Consensus 159 ~~~gi 163 (173)
T cd04155 159 TGEGL 163 (173)
T ss_pred CCCCH
Confidence 99985
No 131
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=7.1e-25 Score=147.19 Aligned_cols=145 Identities=17% Similarity=0.178 Sum_probs=99.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccc---------cccccc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI---------TTAYYR 86 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------~~~~~~ 86 (166)
.+|+++|.+++|||||++++.+..+.....+..+.+.....+..+ .+.+.+||+||+...... ......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999999987754333322333333333333 478999999997421100 000112
Q ss_pred cccEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCC
Q 031083 87 GAMGILLVYDVTDESSF--NNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNN 164 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (166)
..|++++|+|++++.++ +....|++.+.... .+.|+++|+||+|+... .. ..+.+++.+..+.+++++||++|.
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~-~~--~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTF-ED--LSEIEEEEELEGEEVLKISTLTEE 154 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCch-hh--HHHHHHhhhhccCceEEEEecccC
Confidence 36899999999987653 56667888776543 37899999999998432 22 222456666667899999999999
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
|+
T Consensus 155 gi 156 (168)
T cd01897 155 GV 156 (168)
T ss_pred CH
Confidence 85
No 132
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=1.5e-24 Score=151.59 Aligned_cols=151 Identities=38% Similarity=0.554 Sum_probs=120.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++|+|||||+++|..+.+...+.++.+..+........+..+.+.+||++|+++++.++..++..++++++||
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 99999999999999999999999999999998877776666666555788999999999999999999999999999999
Q ss_pred ECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc-----------ccchHHHHHHHHHh---CCeEEEEec
Q 031083 96 DVTDESS-FNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-----------AVPTAKGQELADEY---GIKFFETVS 160 (166)
Q Consensus 96 d~~~~~s-~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~-----------~~~~~~~~~~~~~~---~~~~~~~Sa 160 (166)
|.++..+ .+....|...+........|+++|+||+|+..... ..........+... ...++++|+
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 165 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSA 165 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeec
Confidence 9999555 55556788888777666799999999999955432 23333333333333 335899999
Q ss_pred c--cCCCC
Q 031083 161 M--FNNEW 166 (166)
Q Consensus 161 ~--~~~~v 166 (166)
+ ++.+|
T Consensus 166 ~~~~~~~v 173 (219)
T COG1100 166 KSLTGPNV 173 (219)
T ss_pred ccCCCcCH
Confidence 9 77664
No 133
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=5.1e-25 Score=147.12 Aligned_cols=143 Identities=17% Similarity=0.181 Sum_probs=98.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC---CCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD---SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
.|+++|.+++|||||+++|.+. .+..++.++.+.+.....+.+.+ ...+.+||+||++++......++..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 6899999999999999999963 33333334444455444555542 3579999999999887666677889999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-cccchHHHHHHHHH---hCCeEEEEecccCCCC
Q 031083 94 VYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK-RAVPTAKGQELADE---YGIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~-~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v 166 (166)
|+|+++ +++.+.+. .+... . ..|+++|+||+|+.... .....+++.++.+. .+.+++++||++|+|+
T Consensus 81 V~d~~~~~~~~~~~~~~----~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 81 VVAADEGIMPQTREHLE----ILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGI 154 (164)
T ss_pred EEECCCCccHhHHHHHH----HHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCH
Confidence 999987 33333322 12111 1 24899999999994322 11223444555544 3579999999999885
No 134
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.93 E-value=5e-25 Score=140.10 Aligned_cols=114 Identities=37% Similarity=0.650 Sum_probs=88.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCC--CCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFT--TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
||+|+|++|+|||||+++|.+..+. ..+.+..+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 22333344455556667777777799999999998888777779999999999
Q ss_pred EECCChhhHHHHHHHHH---HHHHhcCCCCcEEEEEeCCC
Q 031083 95 YDVTDESSFNNIRNWMR---NIDQHAADNVNKILVGNKAD 131 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~---~~~~~~~~~~piivv~~K~D 131 (166)
||++++.+++.+..+++ .+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 99999999999866544 44433 34699999999998
No 135
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=1e-24 Score=146.66 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=103.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc----ccccccccc---ccccc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----RFRTITTAY---YRGAM 89 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~---~~~~d 89 (166)
+|+++|.+++|||||++++.+........+..+.+.....+.+++. ..+.+||+||.. ..+.+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999976543222222233333333444442 378999999963 222233333 34599
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcccchHHHHHHHHH-hCCeEEEEecccCCC
Q 031083 90 GILLVYDVTDE-SSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADE-YGIKFFETVSMFNNE 165 (166)
Q Consensus 90 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~ 165 (166)
++++|+|++++ ++++.+..|.+.+..... .+.|+++|+||+|+.+... ..+..+.+... .+.+++++||++|.+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE--LFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh--hHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 99999999999 789999999888876542 3689999999999843322 23445555665 378999999999987
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
+
T Consensus 159 i 159 (170)
T cd01898 159 L 159 (170)
T ss_pred H
Confidence 4
No 136
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.93 E-value=4.2e-25 Score=151.77 Aligned_cols=147 Identities=17% Similarity=0.174 Sum_probs=103.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc--CCCCCCc------------cccceeEeEEEEEEECCeEEEEEEEeCCCcccccccc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD--DSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 81 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 81 (166)
.+|+++|.+++|||||+++|.. +.+...+ ..+.+.+.......+....+.+.+||+||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999997 4544332 1223333444444444455789999999999999888
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHH-------HhCCe
Q 031083 82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD-------EYGIK 154 (166)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~-------~~~~~ 154 (166)
..+++.+|++++|||+++.. +.....++..... .+.|+++|+||+|+.........+++.++.. +.+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998732 2233333333322 3679999999999954332223445555543 33679
Q ss_pred EEEEecccCCCC
Q 031083 155 FFETVSMFNNEW 166 (166)
Q Consensus 155 ~~~~Sa~~~~~v 166 (166)
++++||++|.|.
T Consensus 159 iv~~Sa~~g~~~ 170 (194)
T cd01891 159 VLYASAKNGWAS 170 (194)
T ss_pred EEEeehhccccc
Confidence 999999999763
No 137
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=8.8e-25 Score=151.26 Aligned_cols=147 Identities=20% Similarity=0.161 Sum_probs=105.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc---------cccccc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITT 82 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~ 82 (166)
.+..++|+++|++|+|||||++++.+..+.....+..+.+.....+.+++. ..+.+||+||... +... .
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~ 115 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-L 115 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-H
Confidence 466789999999999999999999998754433333334444445555443 3789999999632 1111 1
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEeccc
Q 031083 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMF 162 (166)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (166)
..+..+|++++|+|++++.++..+..|.+.+......+.|+++|+||+|+.+... ........+.+++++||++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~------~~~~~~~~~~~~~~~Sa~~ 189 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE------LEERLEAGRPDAVFISAKT 189 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH------HHHHhhcCCCceEEEEcCC
Confidence 1256899999999999998888877777766655445789999999999843321 1134455567899999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
|.|+
T Consensus 190 ~~gi 193 (204)
T cd01878 190 GEGL 193 (204)
T ss_pred CCCH
Confidence 9885
No 138
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=2.5e-24 Score=158.12 Aligned_cols=150 Identities=15% Similarity=0.131 Sum_probs=109.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc----ccccc---cccccc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTIT---TAYYRG 87 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~ 87 (166)
...|.++|.++||||||++++.+........+.++.......+.+.+ ...+++||+||.-. ...+. ...++.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 35689999999999999999998654434445555566666666632 24689999999532 11222 334557
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCC
Q 031083 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNE 165 (166)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (166)
++++++|+|+++.++++.+..|..++..+.. .+.|+++|+||+|+.+. .....++.+.+++..+.+++++||++++|
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~-~~~~~~~~~~~~~~~~~~i~~iSAktg~G 315 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE-EEEREKRAALELAALGGPVFLISAVTGEG 315 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc-hhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence 9999999999998889999999988876543 36899999999999433 22333345556666778999999999987
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
|
T Consensus 316 I 316 (335)
T PRK12299 316 L 316 (335)
T ss_pred H
Confidence 5
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=8.3e-25 Score=143.17 Aligned_cols=126 Identities=23% Similarity=0.284 Sum_probs=91.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc-----ccccccccccccccEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTITTAYYRGAMGI 91 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~ 91 (166)
||+++|++++|||||+++|.+..+. +.++.+. .+.. .+||+||+. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999987652 2233221 1211 679999972 2333333 47899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-eEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 166 (166)
++|||++++.++.. ..|.... ..|+++|+||+|+.+ .....++++++++..+. +++++||++|+|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE--ADVDIERAKELLETAGAEPIFEISSVDEQGL 133 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC--cccCHHHHHHHHHHcCCCcEEEEecCCCCCH
Confidence 99999999988754 2343322 239999999999843 23455677888888886 8999999999875
No 140
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.7e-24 Score=142.42 Aligned_cols=151 Identities=21% Similarity=0.402 Sum_probs=118.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
......+|+++|-.++||||++.+|..++.... .||.+ +....+.+.+ +++++||.+|++.++.+|..|+.+.++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~ 87 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQG 87 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEcc--eEEEEEecCCCcccccchhhhccCCcE
Confidence 356779999999999999999999999887665 77776 6666677764 889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC--CeEEEEecccCCCC
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFFETVSMFNNEW 166 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v 166 (166)
+|||+|.+|++.+.+++..+..+..+.. .+.|+++++||.|+++........+...+..-.+ -.+..|+|.+|++.
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence 9999999999999999887777655443 5899999999999965543222222222222111 25778999999873
No 141
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.92 E-value=1.2e-24 Score=138.92 Aligned_cols=155 Identities=23% Similarity=0.481 Sum_probs=135.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
...-.+||.++|++..|||||+-.+.++.+.+++..+.+..+..+.+.+.+.+..+.+||.+|++++.....-..+++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 45567999999999999999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC----CCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM----DESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++|+||++.+.++..+..||.+-.......+|+ +||||.|. +.+.......+++..|+..++++|+||+....||
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv 174 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV 174 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence 999999999999999999999987766666665 56999996 2222233456788899999999999999988775
No 142
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=3.4e-23 Score=135.70 Aligned_cols=146 Identities=49% Similarity=0.834 Sum_probs=112.9
Q ss_pred EEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECC
Q 031083 20 LIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98 (166)
Q Consensus 20 v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 98 (166)
++|++|+|||||++++.+... .....++. .+.........+....+.+||+||+..+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999877 45555555 6677777777777889999999998887777778889999999999999
Q ss_pred ChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 99 DESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 99 ~~~s~~~~~~~~-~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++.++..+..|+ .........+.|+++++||+|+...................+.+++++|+..+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 148 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENV 148 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCCh
Confidence 999998888773 33333445589999999999984332221111144555566789999999998764
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=2.1e-23 Score=139.91 Aligned_cols=146 Identities=18% Similarity=0.140 Sum_probs=99.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
.|+++|.+++|||||+++|..+.+.....++.+.+.....+..+ +....+.+||+||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999988766544444444443444443 13467899999999988888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHH----Hh--CCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD----EY--GIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~----~~--~~~~~~~Sa~~~~~v 166 (166)
|+++....+.. ..+..+.. .+.|+++|+||+|+..........+...+.. .. +.+++++||++|+|+
T Consensus 82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGI 154 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCH
Confidence 99984322111 11222222 3679999999999843221111111222211 11 368999999999885
No 144
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=3.7e-23 Score=137.34 Aligned_cols=137 Identities=16% Similarity=0.194 Sum_probs=101.5
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--ccccEE
Q 031083 20 LIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--RGAMGI 91 (166)
Q Consensus 20 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~~d~~ 91 (166)
++|.+++|||||++++.+..+.....+..+.+.....+.+++ ..+.+||+||+..+.. ++..++ +.+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999999876555556666666666777766 4789999999876654 234445 489999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++|+|++++++.. .++..+.. .+.|+++|+||+|+.... .+. .+.+.+++.++++++++||.+|.|+
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~-~~~-~~~~~~~~~~~~~~~~iSa~~~~~~ 145 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKR-GIK-IDLDKLSELLGVPVVPTSARKGEGI 145 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccc-cch-hhHHHHHHhhCCCeEEEEccCCCCH
Confidence 9999999865432 33333332 267999999999994332 222 3356778888999999999999874
No 145
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=2.7e-23 Score=153.77 Aligned_cols=145 Identities=20% Similarity=0.188 Sum_probs=104.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTA 83 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~ 83 (166)
+..++|+++|.+++|||||+|+|.+........+..+.++....+.+++. ..+.+|||+|.. .|...+ .
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-E 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence 45589999999999999999999997754444444555666677777432 478999999972 122211 2
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccC
Q 031083 84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFN 163 (166)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (166)
.+.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.+. .+...+. ....+++++||++|
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~------~~v~~~~-~~~~~~i~iSAktg 337 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE------PRIERLE-EGYPEAVFVSAKTG 337 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh------HhHHHHH-hCCCCEEEEEccCC
Confidence 4778999999999999988887776666665544447899999999998432 1122221 12246899999999
Q ss_pred CCC
Q 031083 164 NEW 166 (166)
Q Consensus 164 ~~v 166 (166)
.|+
T Consensus 338 ~GI 340 (351)
T TIGR03156 338 EGL 340 (351)
T ss_pred CCH
Confidence 874
No 146
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=4.5e-23 Score=151.37 Aligned_cols=149 Identities=15% Similarity=0.152 Sum_probs=107.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccc----ccccccc---ccc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTITTAY---YRG 87 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~---~~~ 87 (166)
...|+++|.+++|||||++++.+........+.++.......+.+++ ..++.+||+||.... ..+...+ ++.
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 36789999999999999999998764333334444555555566543 357899999996421 1233333 446
Q ss_pred ccEEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEeccc
Q 031083 88 AMGILLVYDVTDE---SSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMF 162 (166)
Q Consensus 88 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (166)
++++++|+|+++. ++++.+..|.+++..... .+.|+++|+||+|+.+. . ...+..+.+++.++.+++++||++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~-~-~~~~~~~~l~~~~~~~vi~iSAkt 313 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE-E-ELAELLKELKKALGKPVFPISALT 313 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh-H-HHHHHHHHHHHHcCCcEEEEEccC
Confidence 9999999999986 678888888887765432 36899999999999443 2 223445667777788999999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
++++
T Consensus 314 g~GI 317 (329)
T TIGR02729 314 GEGL 317 (329)
T ss_pred CcCH
Confidence 9875
No 147
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.90 E-value=2.8e-24 Score=135.99 Aligned_cols=148 Identities=22% Similarity=0.443 Sum_probs=115.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
+..+.++|-.++|||||++....+.+.+.--|+.+ +....+ +...+.+.+||.+|+++++.+|..|.+.++++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG--fnmrk~--tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG--FNMRKV--TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhccccc--ceeEEe--ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 47889999999999999999999999888888777 444444 44558999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHH--HhCCeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNI-DQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD--EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~-~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v 166 (166)
+|+++++.++..+.-+..+ .+..-.+.|++++|||.|+++.-......+...+.. ...+-+|.+|+++..|+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccH
Confidence 9999999998887666555 344456899999999999966544422221111111 11257899999988763
No 148
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.90 E-value=8e-23 Score=138.78 Aligned_cols=149 Identities=16% Similarity=0.169 Sum_probs=98.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc----------ccccc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTI 80 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~ 80 (166)
+....++|+++|.+++|||||++++.+..+.....++.+.......+..++ .+.+||+||.. .+..+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 346778999999999999999999998764443333333333333333332 58999999942 22222
Q ss_pred cccccc---cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-cccchHHHHHHHHHhC--Ce
Q 031083 81 TTAYYR---GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK-RAVPTAKGQELADEYG--IK 154 (166)
Q Consensus 81 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~-~~~~~~~~~~~~~~~~--~~ 154 (166)
...+++ .++++++|+|++++-+.... .++..+.. .+.|+++++||+|+.... .....+++++..+..+ .+
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 233444 46899999999875444333 22333322 367999999999984321 2233455666666654 48
Q ss_pred EEEEecccCCCC
Q 031083 155 FFETVSMFNNEW 166 (166)
Q Consensus 155 ~~~~Sa~~~~~v 166 (166)
++++||++|+|+
T Consensus 167 v~~~Sa~~g~gi 178 (179)
T TIGR03598 167 VQLFSSLKKTGI 178 (179)
T ss_pred eEEEECCCCCCC
Confidence 999999999986
No 149
>PRK04213 GTP-binding protein; Provisional
Probab=99.90 E-value=1.3e-23 Score=145.15 Aligned_cols=140 Identities=17% Similarity=0.188 Sum_probs=93.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCC-----------cccccccc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTIT 81 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~ 81 (166)
...++|+++|.+++|||||++++.+..+.....++.+. ....+.+. .+.+||+|| ++.++..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~--~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTR--KPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceee--CceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 45689999999999999999999998876555554443 33333333 589999999 45555555
Q ss_pred ccccc----cccEEEEEEECCChhhH----H------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHH
Q 031083 82 TAYYR----GAMGILLVYDVTDESSF----N------NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQEL 147 (166)
Q Consensus 82 ~~~~~----~~d~~i~v~d~~~~~s~----~------~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~ 147 (166)
..++. .++++++|+|.++.... . ....++..+. ..+.|+++|+||+|+.+.. .+.+.++
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~----~~~~~~~ 153 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR----DEVLDEI 153 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH----HHHHHHH
Confidence 44443 46788888887653221 0 0011222222 2378999999999984332 3456677
Q ss_pred HHHhCC---------eEEEEecccCCCC
Q 031083 148 ADEYGI---------KFFETVSMFNNEW 166 (166)
Q Consensus 148 ~~~~~~---------~~~~~Sa~~~~~v 166 (166)
++.+++ +++++||++| |+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi 180 (201)
T PRK04213 154 AERLGLYPPWRQWQDIIAPISAKKG-GI 180 (201)
T ss_pred HHHhcCCccccccCCcEEEEecccC-CH
Confidence 777775 4899999999 75
No 150
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=3.4e-22 Score=151.79 Aligned_cols=137 Identities=22% Similarity=0.216 Sum_probs=103.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccc--------ccc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTA 83 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~ 83 (166)
...++|+++|++|+|||||+|+|.+... .....+.++.++....+.+++ ..+.+|||||...+... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 4568999999999999999999998653 223345556677777788877 45789999997654332 235
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccC
Q 031083 84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFN 163 (166)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (166)
+++++|++++|||++++.+++.. |+..+.. .+.|+++|+||+|+... +...+++.++.+++++||+++
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~-------~~~~~~~~~~~~~~~vSak~~ 346 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN-------SLEFFVSSKVLNSSNLSAKQL 346 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc-------chhhhhhhcCCceEEEEEecC
Confidence 67899999999999998887665 6555432 36799999999998432 234567778889999999983
No 151
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.89 E-value=1e-22 Score=137.44 Aligned_cols=144 Identities=22% Similarity=0.248 Sum_probs=98.0
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEEC-CeEEEEEEEeCCCccc----ccccc---ccccccccEE
Q 031083 20 LIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQER----FRTIT---TAYYRGAMGI 91 (166)
Q Consensus 20 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~d~~ 91 (166)
++|++|+|||||++++.+........+..+.+.....+.++ + ..+.+||+||... .+.+. ...++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 58999999999999999976522222223334444445555 4 5689999999632 22222 2346789999
Q ss_pred EEEEECCCh------hhHHHHHHHHHHHHHhcC-------CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEE
Q 031083 92 LLVYDVTDE------SSFNNIRNWMRNIDQHAA-------DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFET 158 (166)
Q Consensus 92 i~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (166)
++|+|++++ .+++.+..|...+..... .+.|+++|+||+|+... ...............+.+++++
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA-EELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch-hHHHHHHHHHHhcCCCCCEEEE
Confidence 999999998 578788777777765432 36899999999999432 2222121234444556789999
Q ss_pred ecccCCCC
Q 031083 159 VSMFNNEW 166 (166)
Q Consensus 159 Sa~~~~~v 166 (166)
||+++.|+
T Consensus 158 Sa~~~~gl 165 (176)
T cd01881 158 SAKTEEGL 165 (176)
T ss_pred ehhhhcCH
Confidence 99999874
No 152
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.89 E-value=4.1e-23 Score=135.56 Aligned_cols=141 Identities=17% Similarity=0.225 Sum_probs=99.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccc------ccccccc--cc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYY--RG 87 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~--~~ 87 (166)
++|+++|.|++|||||+|+|++........|..+.+.....+.+.+ ..+.++|+||.-... .....++ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999887666667777788888888877 567788999943222 1223333 57
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
.|++++|+|+++.+.-.. +..++.+ .+.|+++++||+|.... .. ...+.+.+.+.+|++++.+||++|+|+
T Consensus 79 ~D~ii~VvDa~~l~r~l~---l~~ql~e---~g~P~vvvlN~~D~a~~-~g-~~id~~~Ls~~Lg~pvi~~sa~~~~g~ 149 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLY---LTLQLLE---LGIPVVVVLNKMDEAER-KG-IEIDAEKLSERLGVPVIPVSARTGEGI 149 (156)
T ss_dssp SSEEEEEEEGGGHHHHHH---HHHHHHH---TTSSEEEEEETHHHHHH-TT-EEE-HHHHHHHHTS-EEEEBTTTTBTH
T ss_pred CCEEEEECCCCCHHHHHH---HHHHHHH---cCCCEEEEEeCHHHHHH-cC-CEECHHHHHHHhCCCEEEEEeCCCcCH
Confidence 999999999997543222 3333332 26899999999997332 22 223478899999999999999999874
No 153
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.5e-21 Score=146.94 Aligned_cols=144 Identities=18% Similarity=0.202 Sum_probs=104.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccccc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YRGAM 89 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~d 89 (166)
.|+++|.+++|||||++++.+........+.++.......+.+++ ..++++||+||... ...+...+ ++.++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 899999999999999999998764433344455555555555541 25799999999532 12233333 44599
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCC
Q 031083 90 GILLVYDVTDE---SSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNN 164 (166)
Q Consensus 90 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (166)
++++|+|+++. ++++.+..|.+++..+.. .+.|++||+||+|+.. ..+.++++.+.++.+++++||++++
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-----~~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-----AEENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 99999999865 677777778777766433 3689999999999832 1244567777777899999999998
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
|+
T Consensus 314 GI 315 (424)
T PRK12297 314 GL 315 (424)
T ss_pred CH
Confidence 75
No 154
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.89 E-value=5.3e-22 Score=131.43 Aligned_cols=135 Identities=22% Similarity=0.229 Sum_probs=97.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYYR 86 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 86 (166)
++|+++|++|+|||||++++.+.... ....+..+.+.....+..++ ..+.+||+||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987642 12233334445445555554 56899999997654321 234567
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
.+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .....+.+++++||+++.|+
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL--------LSLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc--------ccccCCCceEEEECCCCCCH
Confidence 8999999999998777766554433 236899999999998443222 34445679999999999874
No 155
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=1.6e-21 Score=152.25 Aligned_cols=143 Identities=20% Similarity=0.238 Sum_probs=105.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
..+..+|+++|..++|||||+++|.+..+.....+..+.+.....+.+++.. .+.||||||++.|..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEE
Confidence 3466899999999999999999999988766655555555555555554432 789999999999999888889999999
Q ss_pred EEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC---------CeEEEEe
Q 031083 92 LLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG---------IKFFETV 159 (166)
Q Consensus 92 i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~~S 159 (166)
++|+|+++ +++.+.+ ... ...+.|+++++||+|+++. ..+++....+..+ .+++++|
T Consensus 163 ILVVda~dgv~~qT~e~i----~~~---~~~~vPiIVviNKiDl~~~----~~e~v~~~L~~~g~~~~~~~~~~~~v~iS 231 (587)
T TIGR00487 163 VLVVAADDGVMPQTIEAI----SHA---KAANVPIIVAINKIDKPEA----NPDRVKQELSEYGLVPEDWGGDTIFVPVS 231 (587)
T ss_pred EEEEECCCCCCHhHHHHH----HHH---HHcCCCEEEEEECcccccC----CHHHHHHHHHHhhhhHHhcCCCceEEEEE
Confidence 99999987 3333322 211 1237899999999998432 2333444333332 4799999
Q ss_pred cccCCCC
Q 031083 160 SMFNNEW 166 (166)
Q Consensus 160 a~~~~~v 166 (166)
|++|+|+
T Consensus 232 AktGeGI 238 (587)
T TIGR00487 232 ALTGDGI 238 (587)
T ss_pred CCCCCCh
Confidence 9999986
No 156
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=4.3e-22 Score=136.63 Aligned_cols=147 Identities=17% Similarity=0.153 Sum_probs=91.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC----CC---CCCccccceeEeEEEEEEEC------------CeEEEEEEEeCCCccc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD----SF---TTSFITTIGIDFKIRTIELD------------GKRIKLQIWDTAGQER 76 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~g~~~ 76 (166)
+||+++|.+++|||||+++|... .+ ..+..+..+.+.....+.+. +..+.+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999872 11 11112223333333333332 3357899999999865
Q ss_pred cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CcccchHHHHHHH-HH----
Q 031083 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES-KRAVPTAKGQELA-DE---- 150 (166)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~-~~~~~~~~~~~~~-~~---- 150 (166)
+..........+|++++|+|+++.........+. +.... +.|+++++||+|+... ..+...+++++.. +.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5333334456789999999998744333322221 11212 5699999999998432 2222233333321 11
Q ss_pred --hCCeEEEEecccCCCC
Q 031083 151 --YGIKFFETVSMFNNEW 166 (166)
Q Consensus 151 --~~~~~~~~Sa~~~~~v 166 (166)
.+.+++++||++|+|+
T Consensus 157 ~~~~~~vi~iSa~~g~gi 174 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGE 174 (192)
T ss_pred CcCCCCEEEEeccCCCCH
Confidence 3578999999999985
No 157
>PRK15494 era GTPase Era; Provisional
Probab=99.88 E-value=1.9e-21 Score=143.70 Aligned_cols=144 Identities=19% Similarity=0.239 Sum_probs=97.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCC-ccccceeEeEEEEEEECCeEEEEEEEeCCCcc-cccccc-------c
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-RFRTIT-------T 82 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~~~-------~ 82 (166)
.++..+|+++|.+++|||||+|+|.+..+... ..+..+.+.....+..++ .++.||||||.. .+..+. .
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 35567999999999999999999998776421 122222344445556655 578999999974 222222 1
Q ss_pred cccccccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC--CeEEEEe
Q 031083 83 AYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFFETV 159 (166)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~S 159 (166)
..+.++|++++|+|.++ ++.... .|++.+... +.|.++|+||+|+... ...++.+++...+ ..++++|
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~----~~~~~~~~l~~~~~~~~i~~iS 197 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK----YLNDIKAFLTENHPDSLLFPIS 197 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc----cHHHHHHHHHhcCCCcEEEEEe
Confidence 23678999999999765 444443 344444332 4577889999998432 2455666666554 5899999
Q ss_pred cccCCCC
Q 031083 160 SMFNNEW 166 (166)
Q Consensus 160 a~~~~~v 166 (166)
|++|.|+
T Consensus 198 Aktg~gv 204 (339)
T PRK15494 198 ALSGKNI 204 (339)
T ss_pred ccCccCH
Confidence 9999885
No 158
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=1.1e-21 Score=153.63 Aligned_cols=146 Identities=20% Similarity=0.286 Sum_probs=105.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCC-------CCCCccc------cceeEeEEEE--EEE---CCeEEEEEEEeCCCcc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDS-------FTTSFIT------TIGIDFKIRT--IEL---DGKRIKLQIWDTAGQE 75 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~ 75 (166)
...||+++|..++|||||+++|.... +...+.. ..++++.... +.+ ++..+.+.+|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 35699999999999999999998642 2122211 1133333222 333 4667899999999999
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC--
Q 031083 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-- 153 (166)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-- 153 (166)
.|...+..+++.+|++|+|+|+++..+......|+.... .+.|+++|+||+|+.... ..+..+++.+.+++
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~---~~~~~~el~~~lg~~~ 154 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD---PERVKKEIEEVIGLDA 154 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC---HHHHHHHHHHHhCCCc
Confidence 999888899999999999999999766666666655442 367999999999984321 12234566666776
Q ss_pred -eEEEEecccCCCC
Q 031083 154 -KFFETVSMFNNEW 166 (166)
Q Consensus 154 -~~~~~Sa~~~~~v 166 (166)
.++++||++|.||
T Consensus 155 ~~vi~vSAktG~GI 168 (595)
T TIGR01393 155 SEAILASAKTGIGI 168 (595)
T ss_pred ceEEEeeccCCCCH
Confidence 4899999999985
No 159
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.88 E-value=1.4e-21 Score=140.52 Aligned_cols=141 Identities=14% Similarity=0.073 Sum_probs=93.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCC-ccccceeEeEEEEEEECCeEEEEEEEeCCCccccc-c-------cccccccc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-T-------ITTAYYRG 87 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~-------~~~~~~~~ 87 (166)
+|+++|.+|+|||||+|+|.+...... ..+.++..........++ .++.+|||||..... . .....+.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 689999999999999999999775322 222222222222222233 578999999964321 1 12345688
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-eEEEEecccCCCC
Q 031083 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETVSMFNNEW 166 (166)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 166 (166)
+|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.. ..........++...+. +++++||++|.|+
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKF--KDKLLPLIDKYAILEDFKDIVPISALTGDNT 152 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCC--HHHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 99999999999876654 333344432 3679999999999842 11222344555555554 8999999999985
No 160
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=9.1e-22 Score=134.20 Aligned_cols=144 Identities=18% Similarity=0.118 Sum_probs=99.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccc----------------cceeEeEEEEEEECCeEEEEEEEeCCCccccccc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFIT----------------TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 80 (166)
+|+++|.+++|||||++.+.+......... ..+.......+... ...+.+||+||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 589999999999999999998766543311 11222222333333 367999999999888888
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CcccchHHHHHHHHH---------
Q 031083 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES-KRAVPTAKGQELADE--------- 150 (166)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~-~~~~~~~~~~~~~~~--------- 150 (166)
+..+++.+|++++|+|++++.+... ..++..+.. .+.|+++|+||+|+... ......+++.+..+.
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8888899999999999988654432 233333332 47899999999999542 222223344444443
Q ss_pred -----hCCeEEEEecccCCCC
Q 031083 151 -----YGIKFFETVSMFNNEW 166 (166)
Q Consensus 151 -----~~~~~~~~Sa~~~~~v 166 (166)
...+++++||++|.|+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi 175 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGV 175 (189)
T ss_pred hcccCCcceEEEEecccCcCH
Confidence 2468999999999875
No 161
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.88 E-value=1.6e-21 Score=152.56 Aligned_cols=142 Identities=21% Similarity=0.255 Sum_probs=107.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc---CCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD---DSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
+.|+++|..++|||||+++|.+ +.+..++.++.+++.....+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 4689999999999999999996 344555566667777666677766 68999999999998887788889999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCc-ccchHHHHHHHHHh----CCeEEEEecccC
Q 031083 93 LVYDVTD---ESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR-AVPTAKGQELADEY----GIKFFETVSMFN 163 (166)
Q Consensus 93 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-iivv~~K~Dl~~~~~-~~~~~~~~~~~~~~----~~~~~~~Sa~~~ 163 (166)
+|+|+++ +.+.+.+. + +. . .++| +++|+||+|+.+... ....+++.++.+.. +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl~-i---l~-~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA-V---LD-L--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH-H---HH-H--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999998 55554443 1 21 1 2567 999999999944221 12234566666655 478999999999
Q ss_pred CCC
Q 031083 164 NEW 166 (166)
Q Consensus 164 ~~v 166 (166)
+|+
T Consensus 152 ~GI 154 (581)
T TIGR00475 152 QGI 154 (581)
T ss_pred CCc
Confidence 985
No 162
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=8.2e-22 Score=151.54 Aligned_cols=148 Identities=20% Similarity=0.179 Sum_probs=102.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc----------cccccc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTIT 81 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~ 81 (166)
+..++|+++|.+++|||||+++|++... .....+.++.+.....+.+++. .+.+|||+|.. .|..+.
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence 3468999999999999999999998764 2344455556666666777774 46799999952 222222
Q ss_pred -ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcc-cchHHHHH-HHHHhCCeEEEE
Q 031083 82 -TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTAKGQE-LADEYGIKFFET 158 (166)
Q Consensus 82 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~-~~~~~~~~-~~~~~~~~~~~~ 158 (166)
...++.+|++++|+|++++.++..+. ++..+.. .+.|+++|+||+|+.+.... ...+++.+ +.....++++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 23568899999999999988877664 3343332 46899999999999532211 11122222 222234789999
Q ss_pred ecccCCCC
Q 031083 159 VSMFNNEW 166 (166)
Q Consensus 159 Sa~~~~~v 166 (166)
||++|.||
T Consensus 363 SAk~g~gv 370 (472)
T PRK03003 363 SAKTGRAV 370 (472)
T ss_pred ECCCCCCH
Confidence 99999985
No 163
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=1.4e-21 Score=135.04 Aligned_cols=117 Identities=18% Similarity=0.370 Sum_probs=89.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc-cEEEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA-MGILLVY 95 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~ 95 (166)
+|+++|++++|||+|+++|..+.+...+.++. ...........+....+.+||+||+.+++..+..+++.+ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 68999999999999999999988766654432 122211111113446799999999999988888889998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHH---hcCCCCcEEEEEeCCCCCC
Q 031083 96 DVTDE-SSFNNIRNWMRNIDQ---HAADNVNKILVGNKADMDE 134 (166)
Q Consensus 96 d~~~~-~s~~~~~~~~~~~~~---~~~~~~piivv~~K~Dl~~ 134 (166)
|+++. .++..+..|+..+.. ....+.|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99997 677777777665532 2235899999999999844
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.87 E-value=1.3e-21 Score=149.15 Aligned_cols=136 Identities=24% Similarity=0.241 Sum_probs=100.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAY 84 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 84 (166)
..++|+++|.+++|||||+|+|.+... .....+..+.++....+.+++ ..+.+|||+|...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 348999999999999999999998764 233345555666667777776 46899999997654331 2236
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCC
Q 031083 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNN 164 (166)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (166)
++.+|++++|+|++++.+++....|.. ..+.|+++|+||+|+.+.. .. . ...+.+++++||++|.
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~-~~-----~---~~~~~~~i~iSAktg~ 356 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEI-DL-----E---EENGKPVIRISAKTGE 356 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccc-hh-----h---hccCCceEEEEeeCCC
Confidence 788999999999999888765443332 3368999999999994321 11 1 3445789999999998
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
|+
T Consensus 357 GI 358 (449)
T PRK05291 357 GI 358 (449)
T ss_pred CH
Confidence 75
No 165
>PRK11058 GTPase HflX; Provisional
Probab=99.87 E-value=2.3e-21 Score=146.57 Aligned_cols=145 Identities=21% Similarity=0.185 Sum_probs=100.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccc--cccc------ccccc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--RTIT------TAYYR 86 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~------~~~~~ 86 (166)
..+|+++|.+++|||||+|+|.+........+..+.+.....+.+.+.. .+.+|||+|..+. ..++ ...++
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 3689999999999999999999876554444455566666666665532 5789999997332 1122 22357
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCe-EEEEecccCCC
Q 031083 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIK-FFETVSMFNNE 165 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 165 (166)
.+|++++|+|++++.+++.+..|...+......+.|+++|+||+|+... .. .... ....+.+ ++++||++|+|
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~-~~---~~~~--~~~~~~~~~v~ISAktG~G 349 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDD-FE---PRID--RDEENKPIRVWLSAQTGAG 349 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCc-hh---HHHH--HHhcCCCceEEEeCCCCCC
Confidence 8999999999999988887765555554444447899999999998432 11 1111 1123555 58899999988
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
+
T Consensus 350 I 350 (426)
T PRK11058 350 I 350 (426)
T ss_pred H
Confidence 5
No 166
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=5.8e-21 Score=128.33 Aligned_cols=145 Identities=25% Similarity=0.233 Sum_probs=93.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCC-CccccceeEeEEEEEEECCeEEEEEEEeCCCcccccc----------c-cc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------I-TT 82 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~-~~ 82 (166)
.++|+++|.+++|||||++++.+..... ...+..+.+.....+..++. .+.+||+||..+... . ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 4789999999999999999999865422 22233333344445555553 478999999643311 0 12
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHH-HHHHHHHh----CCeEEE
Q 031083 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAK-GQELADEY----GIKFFE 157 (166)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~-~~~~~~~~----~~~~~~ 157 (166)
..+..+|++++|+|++++.+..... ++..+.. .+.|+++++||+|+...... ..++ ...+.+.+ ..++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSK-TMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHH-HHHHHHHHHHhhcccccCCceEE
Confidence 2456899999999999987754432 3332222 25799999999998433211 1122 22333333 368999
Q ss_pred EecccCCCC
Q 031083 158 TVSMFNNEW 166 (166)
Q Consensus 158 ~Sa~~~~~v 166 (166)
+||++|+|+
T Consensus 155 ~Sa~~~~~i 163 (174)
T cd01895 155 ISALTGQGV 163 (174)
T ss_pred EeccCCCCH
Confidence 999999874
No 167
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.3e-21 Score=128.93 Aligned_cols=149 Identities=26% Similarity=0.547 Sum_probs=126.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
...++++++|..+.|||++++++.-+.|...+.++.+.+.....+.-+-..+++..||+.|++.+..+...++-+..+.|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 56799999999999999999999999999999999998777555544444589999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNE 165 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (166)
++||.+.+-++.++..|...+.+.+. ++||+++|||.|... ++ .......+-+..++.||+.||+++-|
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~--r~-~k~k~v~~~rkknl~y~~iSaksn~N 156 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKA--RK-VKAKPVSFHRKKNLQYYEISAKSNYN 156 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccc--cc-cccccceeeecccceeEEeecccccc
Confidence 99999999999999999999987765 699999999999822 22 12233456667789999999998765
No 168
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.87 E-value=2.9e-21 Score=121.68 Aligned_cols=146 Identities=26% Similarity=0.436 Sum_probs=112.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
...+.+||+++|-.++|||||++.|.+.. +..-.||.+ +..+.+.+++ ++.+.+||.+|+...+..|..||.+.|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccce
Confidence 34778999999999999999999998754 344455555 6666666664 5689999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC--------CeEEEEecc
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG--------IKFFETVSM 161 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~ 161 (166)
+|+|+|.+|...|+++..-+-++.. ..-..+|+.+.+||.|+... ..+++.+...+ -.+.+|||.
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta------a~~eeia~klnl~~lrdRswhIq~csal 162 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA------AKVEEIALKLNLAGLRDRSWHIQECSAL 162 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh------cchHHHHHhcchhhhhhceEEeeeCccc
Confidence 9999999999999988766655544 23347899999999998322 12233333332 367889999
Q ss_pred cCCCC
Q 031083 162 FNNEW 166 (166)
Q Consensus 162 ~~~~v 166 (166)
+++++
T Consensus 163 s~eg~ 167 (185)
T KOG0074|consen 163 SLEGS 167 (185)
T ss_pred cccCc
Confidence 88764
No 169
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.87 E-value=4.9e-21 Score=152.93 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=105.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
..+...|+++|..++|||||+++|.+..+........+.+.....+.+++ ..++||||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 46778999999999999999999998777655444444444444555555 5789999999999999998889999999
Q ss_pred EEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHH---HHHHHhC--CeEEEEecccC
Q 031083 92 LLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ---ELADEYG--IKFFETVSMFN 163 (166)
Q Consensus 92 i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~---~~~~~~~--~~~~~~Sa~~~ 163 (166)
|+|||+++ +.+.+.+ ... ...++|++|++||+|+..........+.. .++..++ ++++++||++|
T Consensus 365 ILVVdAddGv~~qT~e~i----~~a---~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI----NHA---KAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEEEECCCCCCHhHHHHH----HHH---HhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 99999988 4443332 111 12378999999999994432111111111 1234444 68999999999
Q ss_pred CCC
Q 031083 164 NEW 166 (166)
Q Consensus 164 ~~v 166 (166)
+|+
T Consensus 438 ~GI 440 (787)
T PRK05306 438 EGI 440 (787)
T ss_pred CCc
Confidence 986
No 170
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.8e-21 Score=122.46 Aligned_cols=144 Identities=21% Similarity=0.440 Sum_probs=111.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
++++|+++|-.++||||++..|..++. ....||.+ +....+++.+ +.+.+||.+|+++.+.+|..|+....++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 478999999999999999999998664 34456555 6777777755 889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCcccchHHHHHHH---HHhC--CeEEEEecccCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELA---DEYG--IKFFETVSMFNNE 165 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~---~~~~--~~~~~~Sa~~~~~ 165 (166)
|+|..+.+..++++.-+..+.. .-..+.+++|.+||.|+++... ++|+..+. +..+ --+..+||.+|++
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~---pqei~d~leLe~~r~~~W~vqp~~a~~gdg 165 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK---PQEIQDKLELERIRDRNWYVQPSCALSGDG 165 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC---HHHHHHHhccccccCCccEeeccccccchh
Confidence 9999999999998865555433 3334789999999999965533 34444333 2222 2456788888875
No 171
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=7.9e-21 Score=146.10 Aligned_cols=142 Identities=20% Similarity=0.199 Sum_probs=96.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCccc--------cccccccc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAY 84 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 84 (166)
...+|+++|.+++|||||+|+|.+.... ....+..+.+.....+.+++ ..+.+||+||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 4479999999999999999999987542 33444455555556666666 4588999999753 22233456
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCC
Q 031083 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNN 164 (166)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (166)
++.+|++|+|||+++..++.. ..+...+.. .+.|+++|+||+|+.... .+..+.+...++ ..+++||++|.
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~----~~~~~~~~~g~~-~~~~iSA~~g~ 185 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE----ADAAALWSLGLG-EPHPVSALHGR 185 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc----hhhHHHHhcCCC-CeEEEEcCCCC
Confidence 789999999999998766432 233333332 368999999999984221 121222222333 34799999999
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
|+
T Consensus 186 gi 187 (472)
T PRK03003 186 GV 187 (472)
T ss_pred Cc
Confidence 86
No 172
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.8e-22 Score=130.34 Aligned_cols=152 Identities=23% Similarity=0.344 Sum_probs=112.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC---CC--CCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDD---SF--TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 87 (166)
...+.|+++|..++|||||+.+.... .+ ......+.+.......+.+.+ ..+.|||..|++..+++|..+|..
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCN--APLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeecc--ceeEEEEcCChHHHHHHHHHHHHH
Confidence 34588999999999999999998642 11 111122233345666666653 679999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC---CeEEEEecccC
Q 031083 88 AMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG---IKFFETVSMFN 163 (166)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~ 163 (166)
+|++|+++|+++++.|+.....++.+.. ..-.++|+++.+||.|+.+.............+..++ +++..+||.+|
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~g 172 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTG 172 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence 9999999999999999988877766533 3345899999999999944333222222333334443 78999999999
Q ss_pred CCC
Q 031083 164 NEW 166 (166)
Q Consensus 164 ~~v 166 (166)
+||
T Consensus 173 egv 175 (197)
T KOG0076|consen 173 EGV 175 (197)
T ss_pred ccH
Confidence 986
No 173
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=4.9e-21 Score=145.97 Aligned_cols=149 Identities=13% Similarity=0.124 Sum_probs=101.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc----cccc---cccccc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTI---TTAYYR 86 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~ 86 (166)
...+|+|+|.+++|||||+++|.+........+.++.......+.+.+ .++++||+||... ...+ ....++
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 346799999999999999999998765444445555566666666665 5799999999521 1111 122456
Q ss_pred cccEEEEEEECCCh----hhHHHHHHHHHHHHHhc-----------CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHh
Q 031083 87 GAMGILLVYDVTDE----SSFNNIRNWMRNIDQHA-----------ADNVNKILVGNKADMDESKRAVPTAKGQELADEY 151 (166)
Q Consensus 87 ~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~ 151 (166)
.+|++|+|+|+++. +.++.+..+..++..+. ....|++||+||+|+++.. . ..+.........
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~-e-l~e~l~~~l~~~ 313 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR-E-LAEFVRPELEAR 313 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH-H-HHHHHHHHHHHc
Confidence 79999999999853 34555555555554332 1367999999999994322 1 122223333455
Q ss_pred CCeEEEEecccCCCC
Q 031083 152 GIKFFETVSMFNNEW 166 (166)
Q Consensus 152 ~~~~~~~Sa~~~~~v 166 (166)
+++++++||++++|+
T Consensus 314 g~~Vf~ISA~tgeGL 328 (500)
T PRK12296 314 GWPVFEVSAASREGL 328 (500)
T ss_pred CCeEEEEECCCCCCH
Confidence 789999999999874
No 174
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=3.1e-21 Score=152.88 Aligned_cols=148 Identities=17% Similarity=0.185 Sum_probs=103.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeE--eEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGID--FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
..+..+|+++|..++|||||+++|....+........+.+ .+...+..++....+.|||+||++.|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3566899999999999999999999877755433333322 33333444445578999999999999999988999999
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHH---HHHHhC--CeEEEEecc
Q 031083 90 GILLVYDVTDE---SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQE---LADEYG--IKFFETVSM 161 (166)
Q Consensus 90 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~---~~~~~~--~~~~~~Sa~ 161 (166)
++|+|+|+++. .+++.+. .+ ...+.|+++++||+|+.........++... ++..++ ++++++||+
T Consensus 321 iaILVVDA~dGv~~QT~E~I~----~~---k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk 393 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAIN----YI---QAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISAS 393 (742)
T ss_pred EEEEEEECcCCCChhhHHHHH----HH---HhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence 99999999873 3443332 12 123789999999999954221111111111 123344 689999999
Q ss_pred cCCCC
Q 031083 162 FNNEW 166 (166)
Q Consensus 162 ~~~~v 166 (166)
+|.|+
T Consensus 394 tG~GI 398 (742)
T CHL00189 394 QGTNI 398 (742)
T ss_pred CCCCH
Confidence 99885
No 175
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.86 E-value=4.1e-20 Score=118.00 Aligned_cols=150 Identities=26% Similarity=0.388 Sum_probs=120.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCC--CCccccceeEeEEEEE-EECCeEEEEEEEeCCCcccc-ccccccccccc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT--TSFITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERF-RTITTAYYRGA 88 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~ 88 (166)
-+..||+++|..++|||++++.+.-+... .++.+|++ +++...+ +-.+.+-++.++||.|...+ ..+-..++.-+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 35689999999999999999999866553 45566666 4444444 33555568999999997776 44667788899
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCC
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNN 164 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (166)
|++++|||..+++||+.+..+-..+.+.. +..+||++++||.|+ .++.++..+-+..||+.-.+..+++++....
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr-~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~ 161 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDR-AEPREVDMDVAQIWAKREKVKLWEVTAMDRP 161 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhc-ccchhcCHHHHHHHHhhhheeEEEEEeccch
Confidence 99999999999999998887777775533 347999999999999 5778888888999999999999999998654
No 176
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=7.5e-21 Score=125.99 Aligned_cols=136 Identities=19% Similarity=0.133 Sum_probs=91.0
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccccc
Q 031083 19 LLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRGAM 89 (166)
Q Consensus 19 ~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d 89 (166)
+++|.+|+|||||++++.+.... ....+..+.+........++ ..+.+||+||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999986521 11222333344445555555 5789999999876543 2345678899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-eEEEEecccCCCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETVSMFNNEW 166 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 166 (166)
++++|+|..++.+.... .+.+.+.. .+.|+++|+||+|+.+... ........++ +++++|+++|.|+
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~------~~~~~~~~~~~~~~~~Sa~~~~gv 146 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEED------EAAEFYSLGFGEPIPISAEHGRGI 146 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHH------HHHHHHhcCCCCeEEEecccCCCH
Confidence 99999999875544332 22222322 2589999999999843221 1233445566 8899999999875
No 177
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.86 E-value=7.6e-21 Score=126.55 Aligned_cols=127 Identities=21% Similarity=0.206 Sum_probs=87.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccc----ccccccccEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----TAYYRGAMGIL 92 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~d~~i 92 (166)
+|+++|.+++|||||++++.+... .. ..+ ..+.+... .+||+||....+..+ ...++.+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~-~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LA-RKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cC-ccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999886431 11 111 11222222 269999963222111 22367899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC--eEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI--KFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~v 166 (166)
+|+|+++.+++. ..|+..+ ..+.|+++++||+|+.. ...+++.++++..++ +++++||++|+|+
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi 135 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD----ADVAATRKLLLETGFEEPIFELNSHDPQSV 135 (158)
T ss_pred EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc----ccHHHHHHHHHHcCCCCCEEEEECCCccCH
Confidence 999999887652 2333333 23578999999999843 234667788888885 8999999999985
No 178
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=4.5e-20 Score=140.76 Aligned_cols=146 Identities=25% Similarity=0.199 Sum_probs=98.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccc----------
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT---------- 81 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---------- 81 (166)
...++|+++|.+++|||||+++|++.... ....+.++.+.....+..++. .+.+||+||..+.....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 45689999999999999999999986532 223333444455555566664 68899999975443221
Q ss_pred -ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHH-HHHHHh----CCeE
Q 031083 82 -TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ-ELADEY----GIKF 155 (166)
Q Consensus 82 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~-~~~~~~----~~~~ 155 (166)
...++.+|++++|+|++++.+..... ++..+.. .+.|+++|+||+|+.+. ....++.. .+...+ .+++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~v 321 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD--EKTREEFKKELRRKLPFLDFAPI 321 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC--HHHHHHHHHHHHHhcccCCCCce
Confidence 23578899999999999877765543 3333322 36799999999999521 11112222 222222 3799
Q ss_pred EEEecccCCCC
Q 031083 156 FETVSMFNNEW 166 (166)
Q Consensus 156 ~~~Sa~~~~~v 166 (166)
+++||++|.|+
T Consensus 322 i~~SA~~g~~v 332 (429)
T TIGR03594 322 VFISALTGQGV 332 (429)
T ss_pred EEEeCCCCCCH
Confidence 99999999885
No 179
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.85 E-value=6.9e-21 Score=144.92 Aligned_cols=152 Identities=17% Similarity=0.110 Sum_probs=102.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc--CCCC-----------------------------CCccccceeEeEEEEEEEC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSD--DSFT-----------------------------TSFITTIGIDFKIRTIELD 60 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 60 (166)
....++|+++|..++|||||+++|+. +... .+.....+.+.....+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 35679999999999999999999985 2211 1112233444444444444
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCc--
Q 031083 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADMDESKR-- 137 (166)
Q Consensus 61 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piivv~~K~Dl~~~~~-- 137 (166)
.+.+.+||+||++.|.......+..+|++++|+|+++.++...... +...+.+... ..|+++++||+|+.+...
T Consensus 84 --~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 84 --KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-INQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred --CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-CCeEEEEEEChhccCccHHH
Confidence 4789999999998886656666789999999999998754311111 1111222222 357999999999953221
Q ss_pred -ccchHHHHHHHHHhC-----CeEEEEecccCCCC
Q 031083 138 -AVPTAKGQELADEYG-----IKFFETVSMFNNEW 166 (166)
Q Consensus 138 -~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v 166 (166)
....++++++++..+ ++++++||++|+|+
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni 195 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNV 195 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeeccccccc
Confidence 123456777887776 57999999999985
No 180
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.85 E-value=1.5e-20 Score=129.24 Aligned_cols=149 Identities=19% Similarity=0.167 Sum_probs=94.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc----------ccccc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTI 80 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~ 80 (166)
..+..++|+++|.+|+|||||++++.+..+.....++.+.......... ...+.+||+||.. .+..+
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 3457799999999999999999999997755554544443333222222 2579999999942 23333
Q ss_pred ccccccc---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-cccchHHHHHHHHHhCCeEE
Q 031083 81 TTAYYRG---AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK-RAVPTAKGQELADEYGIKFF 156 (166)
Q Consensus 81 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 156 (166)
...+++. ++++++++|.+++.+.... .+...+. ..+.|+++++||+|+.... .+...+++.+.......+++
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 3444443 4678889998875443221 1112221 1267899999999984322 12222334444444467999
Q ss_pred EEecccCCCC
Q 031083 157 ETVSMFNNEW 166 (166)
Q Consensus 157 ~~Sa~~~~~v 166 (166)
++||++|+|+
T Consensus 173 ~~Sa~~~~gi 182 (196)
T PRK00454 173 LFSSLKKQGI 182 (196)
T ss_pred EEEcCCCCCH
Confidence 9999999874
No 181
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=2.1e-20 Score=146.50 Aligned_cols=135 Identities=19% Similarity=0.214 Sum_probs=100.5
Q ss_pred cCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--ccccEEEE
Q 031083 22 GDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY--RGAMGILL 93 (166)
Q Consensus 22 G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~ 93 (166)
|.+|+|||||+|++.+..+.....+..+.+.....+.+++ .++.+||+||+.++... ...++ .++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999877666667777777777777766 45789999998876543 22232 37899999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|+|.++.+.. ..+..++. ..+.|+++|+||+|+.+ ...+. .+.+++++.++++++++||++|+|+
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~-~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAE-KKGIR-IDEEKLEERLGVPVVPTSATEGRGI 143 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHH-hCCCh-hhHHHHHHHcCCCEEEEECCCCCCH
Confidence 9999974432 22223332 23789999999999833 22232 4578899999999999999999885
No 182
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.85 E-value=3.5e-20 Score=141.05 Aligned_cols=151 Identities=19% Similarity=0.148 Sum_probs=99.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCC-------------------------------CCccccceeEeEEEEEEEC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-------------------------------TSFITTIGIDFKIRTIELD 60 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 60 (166)
....++|+++|.+++|||||+++|+...-. .+..+..+.+.....+..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~- 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET- 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence 456799999999999999999999842110 111233333444444444
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc--
Q 031083 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWMRNIDQHAADNVNKILVGNKADMDESKR-- 137 (166)
Q Consensus 61 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~-- 137 (166)
..+++.+||+||++.|.......+..+|++++|+|++++..... ....+... .... ..|+++++||+|+.+...
T Consensus 82 -~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~~-~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 82 -DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLA-RTLG-INQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred -CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHH-HHcC-CCeEEEEEEccccccccHHH
Confidence 44789999999998876655555788999999999987322211 11222222 2221 246999999999954221
Q ss_pred -ccchHHHHHHHHHhC-----CeEEEEecccCCCC
Q 031083 138 -AVPTAKGQELADEYG-----IKFFETVSMFNNEW 166 (166)
Q Consensus 138 -~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v 166 (166)
....+++.++.+..+ .+++++||++|+|+
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi 193 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNV 193 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCc
Confidence 123456667776666 47999999999985
No 183
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.84 E-value=1.6e-20 Score=129.92 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=91.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCC---CCCccccceeEeEEEEEEEC---------------------------C----
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSF---TTSFITTIGIDFKIRTIELD---------------------------G---- 61 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 61 (166)
++|+++|..++|||||++.+.+... ..+.....++......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 5799999999999999999975421 11111111111111111110 1
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc-ccc
Q 031083 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVP 140 (166)
Q Consensus 62 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~-~~~ 140 (166)
...++.|||+||++.+...+...+..+|++++|+|++++.........+..+... . ..|+++|+||+|+..... ...
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~-~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-G-LKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-C-CCcEEEEEEchhccCHHHHHHH
Confidence 1267899999999988777777778899999999999732111111122222211 1 247999999999943211 112
Q ss_pred hHHHHHHHHHh---CCeEEEEecccCCCC
Q 031083 141 TAKGQELADEY---GIKFFETVSMFNNEW 166 (166)
Q Consensus 141 ~~~~~~~~~~~---~~~~~~~Sa~~~~~v 166 (166)
.++++++.... +.+++++||++|+|+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi 187 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNI 187 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCH
Confidence 23444444433 578999999999985
No 184
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=6.3e-20 Score=137.38 Aligned_cols=147 Identities=13% Similarity=0.125 Sum_probs=102.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccccc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGAM 89 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d 89 (166)
.|.++|.+++|||||+|+|.+........+.++.......+.+.+ ...++|+|+||...-. ......++.+|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 799999999999999999998765444445555555555565543 2358999999953211 11123467899
Q ss_pred EEEEEEECC---ChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC--CeEEEEeccc
Q 031083 90 GILLVYDVT---DESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFFETVSMF 162 (166)
Q Consensus 90 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 162 (166)
++++|+|++ +.+.++.+..|.+++..... .+.|+++|+||+|+... .. ..+.++++.+.++ .+++.+||++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~-~e-l~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE-EE-AEERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh-HH-HHHHHHHHHHHhCCCCCEEEEECCC
Confidence 999999998 45667777777777765432 35799999999998432 11 1234455555555 4789999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
++++
T Consensus 318 g~GI 321 (390)
T PRK12298 318 GLGV 321 (390)
T ss_pred CcCH
Confidence 9874
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=6.9e-20 Score=139.97 Aligned_cols=137 Identities=23% Similarity=0.213 Sum_probs=95.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYR 86 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 86 (166)
.+|+++|.+|+|||||+++|.+.... ....+..+.+.....+.+++ ..+.+|||||+.. +.......+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 22234444556666677776 6799999999876 1222344678
Q ss_pred cccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-eEEEEecccC
Q 031083 87 GAMGILLVYDVTDESSFN--NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETVSMFN 163 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (166)
.+|++++|+|++++.+.. .+..|+... +.|+++|+||+|+... .++..++ ..+++ .++++||++|
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~~-----~~~~~~~-~~lg~~~~~~iSa~~g 147 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPDE-----EADAYEF-YSLGLGEPYPISAEHG 147 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCccc-----hhhHHHH-HhcCCCCCEEEEeeCC
Confidence 899999999998854432 233333322 6799999999997331 1222333 35566 4899999999
Q ss_pred CCC
Q 031083 164 NEW 166 (166)
Q Consensus 164 ~~v 166 (166)
.|+
T Consensus 148 ~gv 150 (435)
T PRK00093 148 RGI 150 (435)
T ss_pred CCH
Confidence 885
No 186
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.84 E-value=7.2e-20 Score=143.67 Aligned_cols=147 Identities=22% Similarity=0.257 Sum_probs=102.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCC--CCC-----Cc------cccceeEeEE--EEEEE---CCeEEEEEEEeCCCc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDS--FTT-----SF------ITTIGIDFKI--RTIEL---DGKRIKLQIWDTAGQ 74 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~-----~~------~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~g~ 74 (166)
+...+|+++|..++|||||+.+|.... ... .. ....++.+.. ..+.+ ++..+.+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 456799999999999999999998631 111 00 0111222222 22222 556789999999999
Q ss_pred cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCe
Q 031083 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIK 154 (166)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~ 154 (166)
..|...+...++.+|++|+|+|+++.........|..... .+.|+++|+||+|+..... .+...++.+.+++.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~~---~~v~~ei~~~lg~~ 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAADP---ERVKQEIEDVIGID 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCcccH---HHHHHHHHHHhCCC
Confidence 9998888889999999999999998655555544443322 3689999999999843221 22234555556654
Q ss_pred ---EEEEecccCCCC
Q 031083 155 ---FFETVSMFNNEW 166 (166)
Q Consensus 155 ---~~~~Sa~~~~~v 166 (166)
++++||++|.|+
T Consensus 158 ~~~vi~iSAktG~GI 172 (600)
T PRK05433 158 ASDAVLVSAKTGIGI 172 (600)
T ss_pred cceEEEEecCCCCCH
Confidence 899999999885
No 187
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.83 E-value=1.4e-19 Score=120.66 Aligned_cols=146 Identities=16% Similarity=0.124 Sum_probs=92.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccc--------ccccccc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYR 86 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 86 (166)
..+|+++|++|+|||||++++.+................... ........+.+||+||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRG-IYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEE-EEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 468999999999999999999987543222111111111111 2222346789999999654322 2234577
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC-CeEEEEecccCCC
Q 031083 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETVSMFNNE 165 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 165 (166)
.+|++++|+|++++.+. ....+...+... +.|+++|+||+|+... .....+....+....+ .+++++|++++.+
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKD-KEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhcccc-HHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 89999999999986221 122233333322 5799999999998422 2222333444555553 6899999999987
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
+
T Consensus 157 ~ 157 (168)
T cd04163 157 V 157 (168)
T ss_pred h
Confidence 4
No 188
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=1e-19 Score=126.29 Aligned_cols=145 Identities=21% Similarity=0.162 Sum_probs=93.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCC-------------------------------ccccceeEeEEEEEEECCeEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTS-------------------------------FITTIGIDFKIRTIELDGKRIK 65 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 65 (166)
||+++|.+++|||||+++|+...-... .....+.+.....+..++ .+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 689999999999999999975321111 112223333344444444 56
Q ss_pred EEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcc---cchH
Q 031083 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA---VPTA 142 (166)
Q Consensus 66 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~---~~~~ 142 (166)
+.+||+||+++|.......++.+|++++|+|++++..- .....+..+.. .. ..++++|+||+|+...... ....
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~-~~~~~~~~~~~-~~-~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLE-QTRRHSYILSL-LG-IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccH-hHHHHHHHHHH-cC-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 88999999988766556667899999999999875321 12222222222 11 2357889999998432211 1234
Q ss_pred HHHHHHHHhCC---eEEEEecccCCCC
Q 031083 143 KGQELADEYGI---KFFETVSMFNNEW 166 (166)
Q Consensus 143 ~~~~~~~~~~~---~~~~~Sa~~~~~v 166 (166)
+++++.+.+++ +++.+||++|.|+
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni 182 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNV 182 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCC
Confidence 55666777774 5899999999885
No 189
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.83 E-value=2.8e-19 Score=143.39 Aligned_cols=142 Identities=17% Similarity=0.168 Sum_probs=102.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccc----------ccc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----------TAY 84 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------~~~ 84 (166)
.++|+++|.+|+|||||+|++++........+..+.+.....+..+ ...+.+||+||..++.... ..+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--ceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 4789999999999999999999876654444555555444444443 4678999999987664321 122
Q ss_pred --cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEeccc
Q 031083 85 --YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMF 162 (166)
Q Consensus 85 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (166)
...+|++++|+|+++.+.. ..++.++.+ .+.|+++++||+|+.+ ...+ ..+.+++.+.+|++++++||++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~-~~~i-~id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAE-KQNI-RIDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhh-ccCc-HHHHHHHHHHhCCCEEEEEeec
Confidence 2478999999999985542 224444433 2689999999999832 2222 3557888899999999999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
|+|+
T Consensus 153 g~GI 156 (772)
T PRK09554 153 GRGI 156 (772)
T ss_pred CCCH
Confidence 9874
No 190
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.83 E-value=1.9e-20 Score=128.03 Aligned_cols=149 Identities=21% Similarity=0.240 Sum_probs=97.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCC--C----------------CccccceeEeEEEEEEECCeEEEEEEEeCCCcc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFT--T----------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 75 (166)
...+|+++|+.++|||||+++|...... . +.....+.......+..+.....++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999853321 1 011122233334444411233678999999999
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHH-HHHHHhC--
Q 031083 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ-ELADEYG-- 152 (166)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~-~~~~~~~-- 152 (166)
.|.......+..+|++|+|+|+.+.-.. .....+..+.. .+.|+++|+||+|+.........+++. .+.+..+
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeeccccccc-ccccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 8888777778999999999999975332 22333333322 367899999999995222222223333 3444442
Q ss_pred ----CeEEEEecccCCCC
Q 031083 153 ----IKFFETVSMFNNEW 166 (166)
Q Consensus 153 ----~~~~~~Sa~~~~~v 166 (166)
++++.+||++|.|+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi 175 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGI 175 (188)
T ss_dssp TTSTEEEEEEBTTTTBTH
T ss_pred ccccceEEEEecCCCCCH
Confidence 47999999999874
No 191
>PRK00089 era GTPase Era; Reviewed
Probab=99.83 E-value=1.2e-19 Score=132.01 Aligned_cols=145 Identities=15% Similarity=0.121 Sum_probs=91.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCc-cccceeEeEEEEEEECCeEEEEEEEeCCCccccc--------ccccccc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSF-ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYY 85 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~ 85 (166)
--.|+++|.+|+|||||+|++.+....... .+.++..........+ ..++.+|||||..... ......+
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 456999999999999999999987653222 1212212221222222 3689999999954322 1223456
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC-CeEEEEecccCC
Q 031083 86 RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETVSMFNN 164 (166)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (166)
.++|++++|+|+++..+ +....++..+. ..+.|+++|+||+|+... ........+.+.+..+ .+++++||++|.
T Consensus 83 ~~~D~il~vvd~~~~~~-~~~~~i~~~l~---~~~~pvilVlNKiDl~~~-~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 83 KDVDLVLFVVDADEKIG-PGDEFILEKLK---KVKTPVILVLNKIDLVKD-KEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred hcCCEEEEEEeCCCCCC-hhHHHHHHHHh---hcCCCEEEEEECCcCCCC-HHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 78999999999998322 11222233332 236799999999999422 1222334455555555 589999999998
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
|+
T Consensus 158 gv 159 (292)
T PRK00089 158 NV 159 (292)
T ss_pred CH
Confidence 75
No 192
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.83 E-value=1.4e-19 Score=119.63 Aligned_cols=142 Identities=18% Similarity=0.123 Sum_probs=93.4
Q ss_pred EEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccc-------cccccccccEE
Q 031083 20 LIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTAYYRGAMGI 91 (166)
Q Consensus 20 v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~d~~ 91 (166)
++|++|+|||||++++.+.... .......+............ ...+.+||+||....... ...++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999986554 33333333333333333321 357999999997655432 23467889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchH--HHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTA--KGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++|+|.++..+..... +..... ..+.|+++|+||.|+.......... .........+.+++++||+++.||
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 152 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGI 152 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCH
Confidence 9999999977765554 233322 2478999999999984432221111 112233344579999999999875
No 193
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.82 E-value=1.1e-22 Score=133.58 Aligned_cols=156 Identities=34% Similarity=0.651 Sum_probs=133.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeE-EEEEEEeCCCcccccccccccccccc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR-IKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
.++..+|++|+|..++|||+++.++....|...|..+++.++..+...++++. +++.+||..||+++..+..-+++.++
T Consensus 21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~ 100 (229)
T KOG4423|consen 21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH 100 (229)
T ss_pred hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence 36788999999999999999999999999999999999988887777776654 68899999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-eEEEEecccCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQH----AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETVSMFNN 164 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (166)
+..+|||+++..+|+....|.+.+... .....|+++.+||+|+-.........+..++++++|+ ..+++|+|.+.
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence 999999999999999999999988432 2346788999999998222222335778999999996 79999999988
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
|.
T Consensus 181 ni 182 (229)
T KOG4423|consen 181 NI 182 (229)
T ss_pred Ch
Confidence 73
No 194
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.82 E-value=1.2e-19 Score=126.94 Aligned_cols=146 Identities=17% Similarity=0.133 Sum_probs=92.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCCccccceeEeEEEEEEECCeEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSF-------------------------------TTSFITTIGIDFKIRTIELDGKRIK 65 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (166)
+|+++|..++|||||+.+|+...- ..+.....+.+.....+..++ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 589999999999999999963210 011112223333344455544 67
Q ss_pred EEEEeCCCccccccccccccccccEEEEEEECCChhh---H---HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-c-
Q 031083 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---F---NNIRNWMRNIDQHAADNVNKILVGNKADMDESK-R- 137 (166)
Q Consensus 66 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~-~- 137 (166)
+.+||+||+..+.......+..+|++++|+|+++... + ......+.... ... ..|+++++||+|+.... .
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLG-VKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcC-CCeEEEEEEccccccccccH
Confidence 8999999988776666666778999999999998421 1 11222222222 221 35899999999995321 1
Q ss_pred ---ccchHHHHHHHHHhC-----CeEEEEecccCCCC
Q 031083 138 ---AVPTAKGQELADEYG-----IKFFETVSMFNNEW 166 (166)
Q Consensus 138 ---~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v 166 (166)
....+++..+.+..+ .+++++||++|+|+
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi 193 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNL 193 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCC
Confidence 111233344445543 57999999999985
No 195
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=8.4e-19 Score=137.33 Aligned_cols=148 Identities=17% Similarity=0.159 Sum_probs=104.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc--CCCCCCc------------cccceeEeEEEEEEECCeEEEEEEEeCCCcccccc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSD--DSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 79 (166)
...||+++|..++|||||+++|.. +.+.... ..+.++.+......+....+.+.+||+||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 467999999999999999999986 3332221 12234444444444444558899999999999998
Q ss_pred ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHH-------hC
Q 031083 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE-------YG 152 (166)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~-------~~ 152 (166)
.+..+++.+|++|+|+|+++.... ..+.++..... .+.|+++++||+|+.........+++.++... ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 889999999999999999874332 22333333322 36789999999998554443334455555422 34
Q ss_pred CeEEEEecccCCC
Q 031083 153 IKFFETVSMFNNE 165 (166)
Q Consensus 153 ~~~~~~Sa~~~~~ 165 (166)
++++.+||++|.+
T Consensus 160 ~PVi~~SA~~G~~ 172 (607)
T PRK10218 160 FPIVYASALNGIA 172 (607)
T ss_pred CCEEEeEhhcCcc
Confidence 6899999999973
No 196
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=5.8e-19 Score=134.67 Aligned_cols=138 Identities=22% Similarity=0.218 Sum_probs=94.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCcc--------cccccccccccc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYYRG 87 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~ 87 (166)
+|+++|.+++|||||+|+|.+.... ....+..+.+.....+.+++ ..+.+|||||.. .+.......++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987642 22234444455556666666 458999999953 233344556788
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-eEEEEecccCCCC
Q 031083 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETVSMFNNEW 166 (166)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 166 (166)
+|++++|+|+.+..+... ..+...+.+ .+.|+++|+||+|+...... ..+ ...+++ +++++||++|.|+
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~-----~~~-~~~lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV-----AAE-FYSLGFGEPIPISAEHGRGI 148 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc-----HHH-HHhcCCCCeEEEeCCcCCCh
Confidence 999999999987544322 112222222 26799999999998433221 122 345676 7999999999875
No 197
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.81 E-value=8.3e-20 Score=138.22 Aligned_cols=154 Identities=23% Similarity=0.269 Sum_probs=113.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
+....+||+++|+.|+||||||-.+....++..-.+-.+.-.....++. ..+..++.|++..++.+......++.+|+
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtP--e~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTP--ENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCc--CcCceEEEecccccchhHHHHHHHhhcCE
Confidence 4567899999999999999999999999887665544432222223333 33567888998766655556778999999
Q ss_pred EEEEEECCChhhHHHHHHHHHH-HHHhcC--CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC--eEEEEecccCCC
Q 031083 91 ILLVYDVTDESSFNNIRNWMRN-IDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGI--KFFETVSMFNNE 165 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~-~~~~~~--~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~ 165 (166)
+.++|+++++.+++.+...|.. +.+... .++|||+||||+|.......-.......+..++.. .+++|||++-.|
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 9999999999999999865554 444431 58999999999999554444222246666666662 789999998766
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
+
T Consensus 163 ~ 163 (625)
T KOG1707|consen 163 V 163 (625)
T ss_pred h
Confidence 4
No 198
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.81 E-value=1.7e-18 Score=121.88 Aligned_cols=140 Identities=20% Similarity=0.159 Sum_probs=94.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccc-------cccccccccc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYRGAM 89 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~d 89 (166)
+|+++|++++|||||+++|.+........+..+.+.....+.+++ ..+.+||+||...... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998764333334444445555666665 5789999999753321 1234678999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHHH-----------------------------------------HHh-----------
Q 031083 90 GILLVYDVTDES-SFNNIRNWMRNI-----------------------------------------DQH----------- 116 (166)
Q Consensus 90 ~~i~v~d~~~~~-s~~~~~~~~~~~-----------------------------------------~~~----------- 116 (166)
++++|+|+++++ ..+.+...+... .++
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998865 333332222110 000
Q ss_pred -----------c--CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 117 -----------A--ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 117 -----------~--~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
. ....|+++|+||+|+. ..+++..+++. ..++++||++|.|+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~------~~~~~~~~~~~--~~~~~~SA~~g~gi 214 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLI------SIEELDLLARQ--PNSVVISAEKGLNL 214 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCC------CHHHHHHHhcC--CCEEEEcCCCCCCH
Confidence 0 1236899999999982 34555666553 46899999999874
No 199
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=5.3e-19 Score=135.13 Aligned_cols=146 Identities=25% Similarity=0.191 Sum_probs=95.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccc----------cc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------IT 81 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~ 81 (166)
...++|+++|.+++|||||++++++... .....+..+.+.....+..++ ..+.+|||||...... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 4579999999999999999999997653 233344444455445555555 4578899999533211 11
Q ss_pred -ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHH----hCCeEE
Q 031083 82 -TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE----YGIKFF 156 (166)
Q Consensus 82 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 156 (166)
...++.+|++++|+|++++.+..... ++..+.+ .+.|+++|+||+|+.+... ..+....+... ..++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~ 322 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIV 322 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEE
Confidence 23567899999999999876655443 3333322 2579999999999842211 11111122222 247999
Q ss_pred EEecccCCCC
Q 031083 157 ETVSMFNNEW 166 (166)
Q Consensus 157 ~~Sa~~~~~v 166 (166)
++||++|.|+
T Consensus 323 ~~SA~~~~gv 332 (435)
T PRK00093 323 FISALTGQGV 332 (435)
T ss_pred EEeCCCCCCH
Confidence 9999999875
No 200
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.80 E-value=8e-19 Score=137.07 Aligned_cols=112 Identities=18% Similarity=0.142 Sum_probs=78.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEE----------------CCeEEEEEEEeCCCccccc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL----------------DGKRIKLQIWDTAGQERFR 78 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~i~D~~g~~~~~ 78 (166)
..-|+++|.+++|||||+++|.+..+........+.+.....+.. +.....+.||||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 346999999999999999999987764432221111111111111 0111248899999999999
Q ss_pred cccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031083 79 TITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (166)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~ 133 (166)
.++..+++.+|++++|+|+++ +.+++.+..+ . ..+.|+++++||+|+.
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~---~~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALNIL----R---MYKTPFVVAANKIDRI 134 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----H---HcCCCEEEEEECCCcc
Confidence 988889999999999999997 5555444311 1 1268999999999995
No 201
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=6.2e-19 Score=141.40 Aligned_cols=144 Identities=21% Similarity=0.229 Sum_probs=97.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCccc----------ccccc-
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT- 81 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~- 81 (166)
..++|+++|.+++|||||+|+|.+.... ....+.++.+.....+.+++.. +.+|||+|..+ |..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999987642 2333444556666667777754 66899999532 11111
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHH-HHHHh----CCeEE
Q 031083 82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQE-LADEY----GIKFF 156 (166)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~-~~~~~----~~~~~ 156 (166)
...++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.+... .+..+. +...+ ..+++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l~~~~~~~ii 599 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR---RQRLERLWKTEFDRVTWARRV 599 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH---HHHHHHHHHHhccCCCCCCEE
Confidence 23467899999999999987776654 3333332 3679999999999943211 111221 22222 25779
Q ss_pred EEecccCCCC
Q 031083 157 ETVSMFNNEW 166 (166)
Q Consensus 157 ~~Sa~~~~~v 166 (166)
++||++|.||
T Consensus 600 ~iSAktg~gv 609 (712)
T PRK09518 600 NLSAKTGWHT 609 (712)
T ss_pred EEECCCCCCH
Confidence 9999999885
No 202
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=8.9e-19 Score=115.38 Aligned_cols=145 Identities=24% Similarity=0.347 Sum_probs=105.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCC--------Ccc----ccceeEeEEEEEEECCeEEEEEEEeCCCcccccc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT--------SFI----TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 79 (166)
.-...||+|.|+-++||||+++.+....... .+. .|...++.. ..+.+ ...+.++++|||+++..
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~--~~~~~-~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--IELDE-DTGVHLFGTPGQERFKF 83 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc--eEEcC-cceEEEecCCCcHHHHH
Confidence 3456899999999999999999998765311 111 222223332 22222 24688899999999999
Q ss_pred ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHh--CCeEEE
Q 031083 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY--GIKFFE 157 (166)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~ 157 (166)
+|..+.+.+.+.|+++|.+.+..+ +....++-+....+ +|++|.+||.|++.... .++++++.+.- +.+.++
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a~p---pe~i~e~l~~~~~~~~vi~ 157 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDALP---PEKIREALKLELLSVPVIE 157 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCCCC---HHHHHHHHHhccCCCceee
Confidence 999999999999999999998888 55555555543322 89999999999955433 45555554443 789999
Q ss_pred EecccCCC
Q 031083 158 TVSMFNNE 165 (166)
Q Consensus 158 ~Sa~~~~~ 165 (166)
.+|..+++
T Consensus 158 ~~a~e~~~ 165 (187)
T COG2229 158 IDATEGEG 165 (187)
T ss_pred eecccchh
Confidence 99998775
No 203
>COG1159 Era GTPase [General function prediction only]
Probab=99.80 E-value=8.5e-19 Score=123.94 Aligned_cols=146 Identities=16% Similarity=0.107 Sum_probs=92.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCcc-ccceeEeEEEEEEECCeEEEEEEEeCCCccc--------cccccccc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAY 84 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 84 (166)
+--.|+++|.|++|||||+|++.+.+..-... +.++.......++.+ ..+++|.||||--. .......-
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 34568999999999999999999977643322 222222222233333 57999999999321 12223455
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC-CeEEEEecccC
Q 031083 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETVSMFN 163 (166)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (166)
+.++|+++||+|++.+..- .....++.+.. .+.|++++.||+|...+.... ....+.+..... ..+++.||++|
T Consensus 83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l-~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVL-LKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred hccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHH-HHHHHHHHhhCCcceEEEeecccc
Confidence 6789999999999974332 22233344433 367999999999984433311 222233333333 38999999999
Q ss_pred CCC
Q 031083 164 NEW 166 (166)
Q Consensus 164 ~~v 166 (166)
.|+
T Consensus 158 ~n~ 160 (298)
T COG1159 158 DNV 160 (298)
T ss_pred CCH
Confidence 885
No 204
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.79 E-value=6.4e-18 Score=135.62 Aligned_cols=144 Identities=18% Similarity=0.163 Sum_probs=93.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCccc--------ccccc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTIT 81 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~ 81 (166)
......+|+++|.+++|||||+|+|++.... ....+..+.+.......+++ ..+.+|||||.+. +....
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~ 348 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQA 348 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHH
Confidence 4455688999999999999999999986541 22334444444444555555 4688999999653 12223
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-eEEEEec
Q 031083 82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETVS 160 (166)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (166)
..+++.+|++++|+|+++.-.... ..|...+.. .+.|+++|+||+|+.... .+..++. ..+. ..+++||
T Consensus 349 ~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~-----~~~~~~~-~lg~~~~~~iSA 418 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE-----YDAAEFW-KLGLGEPYPISA 418 (712)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch-----hhHHHHH-HcCCCCeEEEEC
Confidence 445788999999999986322111 133333332 478999999999983321 1122222 2232 4578999
Q ss_pred ccCCCC
Q 031083 161 MFNNEW 166 (166)
Q Consensus 161 ~~~~~v 166 (166)
++|.||
T Consensus 419 ~~g~GI 424 (712)
T PRK09518 419 MHGRGV 424 (712)
T ss_pred CCCCCc
Confidence 999986
No 205
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=2.8e-18 Score=117.68 Aligned_cols=145 Identities=19% Similarity=0.179 Sum_probs=95.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCC----------------CCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 78 (166)
.++|+++|..++|||||+++|+.... ..+.....+ .......+.....++.+.|+||+..|.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~T--i~~~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGIT--INTAHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCcc--EEeeeeEecCCCeEEEEEECcCHHHHH
Confidence 58999999999999999999975310 111122222 233333343444678899999998776
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCc--ccchHHHHHHHHHhC---
Q 031083 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR--AVPTAKGQELADEYG--- 152 (166)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~~K~Dl~~~~~--~~~~~~~~~~~~~~~--- 152 (166)
......+..+|++++|+|+...-. ......+..+... +.| ++++.||+|+..... +...+++..+.+.++
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 666677789999999999986422 1223333333322 455 789999999843221 112345666666654
Q ss_pred --CeEEEEecccCCC
Q 031083 153 --IKFFETVSMFNNE 165 (166)
Q Consensus 153 --~~~~~~Sa~~~~~ 165 (166)
++++.+||++|.|
T Consensus 156 ~~v~iipiSa~~g~n 170 (195)
T cd01884 156 DNTPIVRGSALKALE 170 (195)
T ss_pred cCCeEEEeeCccccC
Confidence 6899999999987
No 206
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.79 E-value=9.5e-19 Score=137.08 Aligned_cols=143 Identities=19% Similarity=0.196 Sum_probs=99.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc--CCCCCC--------------ccccceeEeEEEEEEECCeEEEEEEEeCCCcccccc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD--DSFTTS--------------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~--~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 79 (166)
.+|+++|..++|||||+++|+. +.+... .....++......+.+++ +.+.+||+||+..|..
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~ 79 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGG 79 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHH
Confidence 4899999999999999999985 333221 111222223333445544 7899999999999988
Q ss_pred ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHH-------HhC
Q 031083 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD-------EYG 152 (166)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~-------~~~ 152 (166)
.+...++.+|++++|+|+++.. ....+.++..... .++|+++|+||+|+.........+++.++.. +..
T Consensus 80 ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~ 155 (594)
T TIGR01394 80 EVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLD 155 (594)
T ss_pred HHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccccc
Confidence 8888899999999999998732 3344555555543 3678999999999854333222344555443 335
Q ss_pred CeEEEEecccCC
Q 031083 153 IKFFETVSMFNN 164 (166)
Q Consensus 153 ~~~~~~Sa~~~~ 164 (166)
++++.+||++|.
T Consensus 156 ~pvl~~SA~~g~ 167 (594)
T TIGR01394 156 FPIVYASGRAGW 167 (594)
T ss_pred CcEEechhhcCc
Confidence 789999999985
No 207
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.79 E-value=3.1e-18 Score=134.76 Aligned_cols=142 Identities=22% Similarity=0.203 Sum_probs=97.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc---CCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD---DSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
-|.++|..++|||||+++|.+ +.+..+.....+++.....+...+. ..+.|||+||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 478999999999999999996 3344444445555554444433222 357899999999887766667889999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCc-ccchHHHHHHHHHhC---CeEEEEecccCCC
Q 031083 94 VYDVTD---ESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR-AVPTAKGQELADEYG---IKFFETVSMFNNE 165 (166)
Q Consensus 94 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-iivv~~K~Dl~~~~~-~~~~~~~~~~~~~~~---~~~~~~Sa~~~~~ 165 (166)
|+|+++ +.+.+.+. .+ ... +.| +++|+||+|+.+... ....+++.++....+ .+++++||++|+|
T Consensus 81 VVda~eg~~~qT~ehl~----il-~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 81 VVACDDGVMAQTREHLA----IL-QLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EEECCCCCcHHHHHHHH----HH-HHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 999987 44444432 22 211 344 689999999943211 122345566665555 6899999999998
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
+
T Consensus 154 I 154 (614)
T PRK10512 154 I 154 (614)
T ss_pred C
Confidence 5
No 208
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.78 E-value=3.5e-18 Score=133.83 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=77.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCcc----ccceeEeEEEEEE--ECCeE-----E-----EEEEEeCCCccc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFI----TTIGIDFKIRTIE--LDGKR-----I-----KLQIWDTAGQER 76 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~g~~~ 76 (166)
.+...|+++|.+++|||||+++|.+........ ++.+..+...... ..+.. . .+.||||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 455679999999999999999998754432222 1222111111000 00111 1 268999999999
Q ss_pred cccccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031083 77 FRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (166)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~ 133 (166)
|..++...+..+|++++|+|+++ +.+++.+..+ . ..+.|+++++||+|+.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~---~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINIL----K---RRKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----H---HcCCCEEEEEECcCCc
Confidence 99888888899999999999997 6666554321 1 1368999999999984
No 209
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.78 E-value=5.2e-18 Score=122.09 Aligned_cols=142 Identities=23% Similarity=0.297 Sum_probs=93.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCC----------ccccceeEeEEEEEEECCeEEEEEEEeCCCcccc------
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF------ 77 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------ 77 (166)
..++|+++|.+|+|||||+|+|++..+... ..++.........+..++..+++.+|||||....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999999876443 3444455555566667788889999999993211
Q ss_pred --------------------ccccccccc--cccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031083 78 --------------------RTITTAYYR--GAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDE 134 (166)
Q Consensus 78 --------------------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~~K~Dl~~ 134 (166)
...+...+. .+|+++++++.+... .... ..+++.+. .++|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence 111213343 467788888766421 1111 23333343 2689999999999833
Q ss_pred C-CcccchHHHHHHHHHhCCeEEEEec
Q 031083 135 S-KRAVPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 135 ~-~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
. +.....+.+.+.++.+++++|....
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPE 184 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCC
Confidence 2 2334456677788888888876544
No 210
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.78 E-value=3.9e-18 Score=113.97 Aligned_cols=141 Identities=18% Similarity=0.239 Sum_probs=87.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITTAYYR 86 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~ 86 (166)
.|+++|.+|+|||||++.+.++.+.+...++.+.......+..++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996655554444444433333334333 789999999432 2233333333
Q ss_pred ---cccEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc-ccchHHHHHHHH--HhCCeEEEE
Q 031083 87 ---GAMGILLVYDVTDESS--FNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAKGQELAD--EYGIKFFET 158 (166)
Q Consensus 87 ---~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~-~~~~~~~~~~~~--~~~~~~~~~ 158 (166)
.++++++++|.....+ ...+..|+... +.|+++++||+|+..... ...........+ ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 4678999999886532 22333343332 579999999999833221 111122222232 234689999
Q ss_pred ecccCCCC
Q 031083 159 VSMFNNEW 166 (166)
Q Consensus 159 Sa~~~~~v 166 (166)
||+++.++
T Consensus 152 Sa~~~~~~ 159 (170)
T cd01876 152 SSLKGQGI 159 (170)
T ss_pred ecCCCCCH
Confidence 99999763
No 211
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.78 E-value=1.8e-18 Score=130.80 Aligned_cols=152 Identities=13% Similarity=0.131 Sum_probs=94.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCC---CCccccceeEeEEEE--------------EEE----CC------eEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT---TSFITTIGIDFKIRT--------------IEL----DG------KRIK 65 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~~----~~------~~~~ 65 (166)
+..++|+++|..++|||||++.|.+.... .+.....+....... +.. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 46799999999999999999999763221 111111111111000 001 11 1357
Q ss_pred EEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc-ccchHHH
Q 031083 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAKG 144 (166)
Q Consensus 66 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~-~~~~~~~ 144 (166)
+.+||+||++.|...+......+|++++|+|+++..........+..+... . ..|+++++||+|+.+... ....+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-g-i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-G-IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-C-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 899999999999887777778899999999999643111222222222221 1 246899999999953221 1223445
Q ss_pred HHHHHHh---CCeEEEEecccCCCC
Q 031083 145 QELADEY---GIKFFETVSMFNNEW 166 (166)
Q Consensus 145 ~~~~~~~---~~~~~~~Sa~~~~~v 166 (166)
.++.+.. +++++++||++|+|+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi 184 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANI 184 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCCh
Confidence 5555443 578999999999985
No 212
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.77 E-value=3.1e-18 Score=129.58 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=93.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCC---CCCccccceeEeEEEEEE------------------EC--C----eE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSF---TTSFITTIGIDFKIRTIE------------------LD--G----KR 63 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~---~~~~~~~~~~~~~~~~~~------------------~~--~----~~ 63 (166)
..+..++|+++|..++|||||+.+|.+... ..+.....++........ ++ + ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 456779999999999999999999965311 111112222221111100 01 0 12
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChh----hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcc-
Q 031083 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES----SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA- 138 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~- 138 (166)
..+.+||+||++.|..........+|++++|+|++++. +.+.+. .+.. .. ..|+++|+||+|+.+....
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~-~~-i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDI-IG-IKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHH-cC-CCcEEEEEEeeccccchhHH
Confidence 57899999999887665555556789999999999642 332222 2211 11 2368999999999443221
Q ss_pred cchHHHHHHHHHh---CCeEEEEecccCCCC
Q 031083 139 VPTAKGQELADEY---GIKFFETVSMFNNEW 166 (166)
Q Consensus 139 ~~~~~~~~~~~~~---~~~~~~~Sa~~~~~v 166 (166)
...+++..+.+.. +.+++++||++|+|+
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI 189 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNI 189 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEEEECCCCcCH
Confidence 1234455555432 478999999999885
No 213
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=7e-19 Score=111.30 Aligned_cols=150 Identities=21% Similarity=0.374 Sum_probs=109.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
++++.+++++|--|+|||+++.++.-+..... .|+.+ +....+.+ +...+.+||+.|+-..+..|.-|+.+.|++
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevvtt-kPtig--fnve~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~av 89 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIG--FNVETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAV 89 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCC--cCcccccc--ccccceeeEccCcccccHHHHHHhcccceE
Confidence 35789999999999999999999987665333 44444 45555555 558899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCCcc--cchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNI-DQHAADNVNKILVGNKADMDESKRA--VPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~piivv~~K~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|+|+|.+|.+........+..+ .+..-++..+++++||.|+...... +...-..+-.+..-..+|++||.+|++.
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gl 167 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGL 167 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCC
Confidence 9999999999887776544443 3334457889999999998332211 1111111111222368999999999874
No 214
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.76 E-value=1.2e-17 Score=127.34 Aligned_cols=149 Identities=17% Similarity=0.130 Sum_probs=101.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCCccccceeEeEEEEEEEC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF-------------------------------TTSFITTIGIDFKIRTIELD 60 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 60 (166)
...+++|+++|..++|||||+.+|+...- ..+.....+++. ....+.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~--~~~~~~ 81 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDI--ALWKFE 81 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEE--EEEEec
Confidence 35679999999999999999999864110 111112222233 333344
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHH-------HHHHHHHHHHHhcCCCC-cEEEEEeCCCC
Q 031083 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN-------NIRNWMRNIDQHAADNV-NKILVGNKADM 132 (166)
Q Consensus 61 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-piivv~~K~Dl 132 (166)
.....+.+.|+||+++|.......+..+|++|+|+|+++. .|+ ..+..+..... .++ ++++++||+|+
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDA 157 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccC
Confidence 4456789999999999988888888999999999999872 222 22333322222 245 57889999998
Q ss_pred CCC-----CcccchHHHHHHHHHhC-----CeEEEEecccCCCC
Q 031083 133 DES-----KRAVPTAKGQELADEYG-----IKFFETVSMFNNEW 166 (166)
Q Consensus 133 ~~~-----~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v 166 (166)
.+. ......++++.++++.+ ++|+++||++|+|+
T Consensus 158 ~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni 201 (447)
T PLN00043 158 TTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNM 201 (447)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccc
Confidence 411 11223566788888776 57999999999985
No 215
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.76 E-value=1.8e-17 Score=117.81 Aligned_cols=148 Identities=16% Similarity=0.225 Sum_probs=111.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc----ccccccccc---c
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAYY---R 86 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~ 86 (166)
....|.++|.|++|||||++.+...+......++++.......+.+++.. ++++-|+||.-+ -..+-..|+ +
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHH
Confidence 34567899999999999999999987766677777777777777776544 489999999321 122333444 4
Q ss_pred cccEEEEEEECCCh---hhHHHHHHHHHHHHHh--cCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCe-EEEEec
Q 031083 87 GAMGILLVYDVTDE---SSFNNIRNWMRNIDQH--AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIK-FFETVS 160 (166)
Q Consensus 87 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~--~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa 160 (166)
.|+.++||+|++.+ ..++.++.++.++..+ ...+.|.++|+||+|+++. ...-..++++...-+ ++++||
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea----e~~~l~~L~~~lq~~~V~pvsA 349 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA----EKNLLSSLAKRLQNPHVVPVSA 349 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH----HHHHHHHHHHHcCCCcEEEeee
Confidence 69999999999998 8888888888877443 3457899999999998422 122246777777654 999999
Q ss_pred ccCCCC
Q 031083 161 MFNNEW 166 (166)
Q Consensus 161 ~~~~~v 166 (166)
++++++
T Consensus 350 ~~~egl 355 (366)
T KOG1489|consen 350 KSGEGL 355 (366)
T ss_pred ccccch
Confidence 999874
No 216
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=1.5e-17 Score=125.52 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=96.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCC----------------CCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS----------------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 75 (166)
..+.++|+++|..++|||||+++|.+.. ...+.....+.+ ...+.++....++.+||+||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence 4668999999999999999999997420 011112223333 3344444455678999999999
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCc--ccchHHHHHHHHHhC
Q 031083 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK-ILVGNKADMDESKR--AVPTAKGQELADEYG 152 (166)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ivv~~K~Dl~~~~~--~~~~~~~~~~~~~~~ 152 (166)
+|..........+|++++|+|+.+..... ....+..+.. .+.|. ++++||+|+.+... +...++++++++..+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 88665555567789999999998732211 1222222222 14565 46899999843221 112346777777765
Q ss_pred -----CeEEEEecccCC
Q 031083 153 -----IKFFETVSMFNN 164 (166)
Q Consensus 153 -----~~~~~~Sa~~~~ 164 (166)
++++++||++|.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 689999999875
No 217
>PRK12735 elongation factor Tu; Reviewed
Probab=99.76 E-value=2.3e-17 Score=124.50 Aligned_cols=149 Identities=17% Similarity=0.148 Sum_probs=96.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcC-------CC---------CCCccccceeEeEEEEEEECCeEEEEEEEeCCCc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDD-------SF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 74 (166)
.....++|+++|..++|||||+++|++. .+ ..+.....+.+. ....+.....++.|+|+||+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGH 85 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCH
Confidence 3467799999999999999999999862 10 111122223233 33334334467899999999
Q ss_pred cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCc--ccchHHHHHHHHHh
Q 031083 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKI-LVGNKADMDESKR--AVPTAKGQELADEY 151 (166)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-vv~~K~Dl~~~~~--~~~~~~~~~~~~~~ 151 (166)
..|.......+..+|++++|+|+.+.... .....+..+.. .+.|.+ +++||+|+.+... +...+++..+.+.+
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~ 161 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence 87766556667789999999999873221 22233333322 256755 6799999953211 11233566677665
Q ss_pred C-----CeEEEEecccCCC
Q 031083 152 G-----IKFFETVSMFNNE 165 (166)
Q Consensus 152 ~-----~~~~~~Sa~~~~~ 165 (166)
+ ++++++||++|.|
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 162 DFPGDDTPIIRGSALKALE 180 (396)
T ss_pred CCCcCceeEEecchhcccc
Confidence 4 6899999999865
No 218
>COG2262 HflX GTPases [General function prediction only]
Probab=99.75 E-value=1.4e-17 Score=122.13 Aligned_cols=155 Identities=23% Similarity=0.203 Sum_probs=113.0
Q ss_pred CccccCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc-------
Q 031083 4 APARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER------- 76 (166)
Q Consensus 4 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------- 76 (166)
...|.+........|.++|..++|||||+|.|++........-+.+.+.+.+.+...+ ...+.+.||.|.-+
T Consensus 181 ~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV 259 (411)
T COG2262 181 EPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLV 259 (411)
T ss_pred HHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHH
Confidence 3445556667889999999999999999999998777666666677778878888775 23567779999322
Q ss_pred --cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCe
Q 031083 77 --FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIK 154 (166)
Q Consensus 77 --~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~ 154 (166)
|.+. -.....+|++++|+|+++|...+.+..-...+.+....+.|+++|.||+|+..+.. ....+..... .
T Consensus 260 ~AFksT-LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~-~ 332 (411)
T COG2262 260 EAFKST-LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSP-N 332 (411)
T ss_pred HHHHHH-HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCC-C
Confidence 2221 22345799999999999998877777777777766556799999999999743322 1122222223 5
Q ss_pred EEEEecccCCCC
Q 031083 155 FFETVSMFNNEW 166 (166)
Q Consensus 155 ~~~~Sa~~~~~v 166 (166)
.+.+||++|+|+
T Consensus 333 ~v~iSA~~~~gl 344 (411)
T COG2262 333 PVFISAKTGEGL 344 (411)
T ss_pred eEEEEeccCcCH
Confidence 899999999874
No 219
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.75 E-value=1.7e-17 Score=115.67 Aligned_cols=120 Identities=19% Similarity=0.200 Sum_probs=80.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCC--C--------------CccccceeEeEEEEEEEC--------CeEEEEEEEeCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFT--T--------------SFITTIGIDFKIRTIELD--------GKRIKLQIWDTA 72 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 72 (166)
+|+++|..++|||||+.+|+..... . +.....++......+.++ +..+.+.+||+|
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999999753211 0 001111111112222332 446889999999
Q ss_pred CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccc
Q 031083 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP 140 (166)
Q Consensus 73 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~ 140 (166)
|+..|.......++.+|++++|+|+.+....... ..+.... ..+.|+++++||+|+...+.+..
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~---~~~~p~ilviNKiD~~~~e~~~~ 145 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQAL---KERVKPVLVINKIDRLILELKLS 145 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHH---HcCCCEEEEEECCCcchhhhcCC
Confidence 9999998888999999999999999986554432 2222222 23579999999999853333333
No 220
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.75 E-value=1.9e-17 Score=116.82 Aligned_cols=129 Identities=18% Similarity=0.163 Sum_probs=86.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCC--------C----------CccccceeEeEEEEEEECCeEEEEEEEeCCCccccc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFT--------T----------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 78 (166)
+|+++|..++|||||+++|....-. . +.....++......+.++ ..++.+||+||+..|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~--~~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE--DTKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC--CEEEEEEeCCCccchH
Confidence 5899999999999999999753110 0 011111222233334444 4789999999999888
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCe
Q 031083 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIK 154 (166)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~ 154 (166)
..+...++.+|++++|+|+++.... ....++..+.. .+.|+++++||+|+..... .+-..++...++..
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~a~~---~~~~~~i~~~~~~~ 147 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAGADL---EKVYQEIKEKLSSD 147 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccCCCH---HHHHHHHHHHHCCC
Confidence 8888889999999999999985443 34455555443 2679999999999844332 23344455555543
No 221
>PRK12736 elongation factor Tu; Reviewed
Probab=99.75 E-value=3.7e-17 Score=123.27 Aligned_cols=147 Identities=17% Similarity=0.145 Sum_probs=95.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC----------------CCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 75 (166)
....++|+++|..++|||||+++|++... ..+.....+ .......+.....++.++|+||++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T--~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGIT--INTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCcc--EEEEeeEecCCCcEEEEEECCCHH
Confidence 45679999999999999999999986211 111122223 333334444445678999999998
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCcc--cchHHHHHHHHHhC
Q 031083 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKRA--VPTAKGQELADEYG 152 (166)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~~K~Dl~~~~~~--~~~~~~~~~~~~~~ 152 (166)
+|.......+..+|++++|+|+.+...- .....+..+.. .+.| +++++||+|+.+.... ...+++.++.+..+
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 8866556666789999999999863221 11222222222 2567 6789999998532211 12345666666665
Q ss_pred -----CeEEEEecccCC
Q 031083 153 -----IKFFETVSMFNN 164 (166)
Q Consensus 153 -----~~~~~~Sa~~~~ 164 (166)
++++++||++|.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 163 FPGDDIPVIRGSALKAL 179 (394)
T ss_pred CCcCCccEEEeeccccc
Confidence 589999999984
No 222
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=5.9e-17 Score=112.87 Aligned_cols=113 Identities=27% Similarity=0.319 Sum_probs=78.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCc-----------------cccceeEeEEE--EEEE---CCeEEEEEEEeCCCc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSF-----------------ITTIGIDFKIR--TIEL---DGKRIKLQIWDTAGQ 74 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~-----------------~~~~~~~~~~~--~~~~---~~~~~~~~i~D~~g~ 74 (166)
+|+++|..++|||||+++|......... ....+..+... .+.+ ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999874432210 01111122111 1212 355688999999999
Q ss_pred cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031083 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (166)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~ 133 (166)
..+......++..+|++++|+|+++..+... ..++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9988878888999999999999988665432 334343322 258999999999974
No 223
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.74 E-value=2e-17 Score=106.55 Aligned_cols=127 Identities=24% Similarity=0.292 Sum_probs=87.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCc----cccccccccccccccEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----ERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~d~~i 92 (166)
||+++|+.|+|||||+++|.+..... ..|..+ .+.+ .+.|+||- ..+.........++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~--~KTq~i-------~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY--KKTQAI-------EYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc--Ccccee-------Eecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 79999999999999999999966522 222221 1111 23699992 222222233345899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-eEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 166 (166)
++.|++++.+... ..+.... +.|+|-|.||+|+..+ ....+.++++.+..|+ .+|++|+.+|+++
T Consensus 69 ll~dat~~~~~~p-----P~fa~~f--~~pvIGVITK~Dl~~~--~~~i~~a~~~L~~aG~~~if~vS~~~~eGi 134 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASMF--NKPVIGVITKIDLPSD--DANIERAKKWLKNAGVKEIFEVSAVTGEGI 134 (143)
T ss_pred EEecCCCCCccCC-----chhhccc--CCCEEEEEECccCccc--hhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence 9999998655311 1122222 5699999999999422 3456778889999997 6899999999985
No 224
>PLN03126 Elongation factor Tu; Provisional
Probab=99.74 E-value=4.6e-17 Score=124.78 Aligned_cols=149 Identities=16% Similarity=0.126 Sum_probs=98.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCC------C----------CCCccccceeEeEEEEEEECCeEEEEEEEeCCCc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDS------F----------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 74 (166)
.....++|+++|..++|||||+++|+... . ..+.....+++.....+..+ ..++.++|+||+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--~~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--CcEEEEEECCCH
Confidence 35668999999999999999999998521 1 11222222333333333333 457889999999
Q ss_pred cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCc--ccchHHHHHHHHHh
Q 031083 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR--AVPTAKGQELADEY 151 (166)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~~K~Dl~~~~~--~~~~~~~~~~~~~~ 151 (166)
+.|-......+..+|++++|+|+.+...- ..+.++..+.. .++| ++++.||+|+.+.+. +...+++..+.+..
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~ 230 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSY 230 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhc
Confidence 98877666667789999999999874322 22333333322 2567 788999999854211 11223566666665
Q ss_pred -----CCeEEEEecccCCC
Q 031083 152 -----GIKFFETVSMFNNE 165 (166)
Q Consensus 152 -----~~~~~~~Sa~~~~~ 165 (166)
+++++.+|+.+|.|
T Consensus 231 g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 231 EFPGDDIPIISGSALLALE 249 (478)
T ss_pred CCCcCcceEEEEEcccccc
Confidence 36899999999865
No 225
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.73 E-value=9e-17 Score=124.46 Aligned_cols=141 Identities=17% Similarity=0.213 Sum_probs=107.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--c
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--R 86 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~ 86 (166)
..+|+++|.||+|||||+|++++........|..+.+.....+..++.. +++.|+||--.... ....++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 4569999999999999999999988888888888888877778877755 77779999433221 222333 3
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCC
Q 031083 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNE 165 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (166)
+.|+++-|+|+++.+.--.+.-.+.++ +.|++++.|++|. .+++-..-+.+++.+.+|+|++++||++|++
T Consensus 81 ~~D~ivnVvDAtnLeRnLyltlQLlE~------g~p~ilaLNm~D~--A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G 151 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLTLQLLEL------GIPMILALNMIDE--AKKRGIRIDIEKLSKLLGVPVVPTVAKRGEG 151 (653)
T ss_pred CCCEEEEEcccchHHHHHHHHHHHHHc------CCCeEEEeccHhh--HHhcCCcccHHHHHHHhCCCEEEEEeecCCC
Confidence 579999999999866533333222222 7899999999997 3333344567899999999999999999987
No 226
>CHL00071 tufA elongation factor Tu
Probab=99.73 E-value=1.1e-16 Score=121.36 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=97.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC----------------CCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 75 (166)
....++|+++|.+++|||||+++|++... ..+..+..+.+. ....+.....++.|.|+||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~--~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc--cEEEEccCCeEEEEEECCChH
Confidence 45679999999999999999999986311 111122223332 223333344578899999988
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCc--ccchHHHHHHHHHhC
Q 031083 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR--AVPTAKGQELADEYG 152 (166)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~~K~Dl~~~~~--~~~~~~~~~~~~~~~ 152 (166)
.|.......+..+|++++|+|+...-. ......+..+.. .+.| ++++.||+|+.+... +...+++..+.+..+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 776656666788999999999986322 122222232222 2567 778999999954221 112345666666654
Q ss_pred -----CeEEEEecccCCC
Q 031083 153 -----IKFFETVSMFNNE 165 (166)
Q Consensus 153 -----~~~~~~Sa~~~~~ 165 (166)
.+++.+||.+|.|
T Consensus 163 ~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 163 FPGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCCcceEEEcchhhccc
Confidence 5899999999975
No 227
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.9e-17 Score=105.76 Aligned_cols=118 Identities=21% Similarity=0.378 Sum_probs=94.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
+.-|++++|-.++|||||++.|..+.. ..+.||. ...+.+..+.+ .+++.+|++|+.+.+..|..++..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTl--HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTL--HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc-cccCCCc--CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 446899999999999999999998654 2233332 23344556655 678889999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESK 136 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl~~~~ 136 (166)
.+|+.|.+.|.+.+.-++.+.. ..-..+|+++.+||+|.+...
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 9999999999988877766543 223489999999999996554
No 228
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.73 E-value=7.1e-17 Score=112.73 Aligned_cols=143 Identities=18% Similarity=0.282 Sum_probs=86.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccc-cceeEeEEEEEEECCeEEEEEEEeCCCcccccc-----ccccccccccE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----ITTAYYRGAMG 90 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~d~ 90 (166)
||+++|+++|||||+.+.++.+..+.+... ..+.+.....+... ..+.+.+||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999999998765433221 11222333333322 235899999999875544 34556789999
Q ss_pred EEEEEECCChhhHHHHHHHHH---HHHHhcCCCCcEEEEEeCCCCCCCCcc-c----chHHHHHHHHHhC---CeEEEEe
Q 031083 91 ILLVYDVTDESSFNNIRNWMR---NIDQHAADNVNKILVGNKADMDESKRA-V----PTAKGQELADEYG---IKFFETV 159 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~piivv~~K~Dl~~~~~~-~----~~~~~~~~~~~~~---~~~~~~S 159 (166)
+|+|+|+.+.+..+.+..+.. .+.+. .++..+.++..|+|+..+... . ..+++.+.+...+ +.|+.||
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 999999996555445544444 34444 458999999999998433221 1 2233444555555 7888887
Q ss_pred cc
Q 031083 160 SM 161 (166)
Q Consensus 160 a~ 161 (166)
-.
T Consensus 159 I~ 160 (232)
T PF04670_consen 159 IW 160 (232)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 229
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.72 E-value=8.6e-17 Score=119.94 Aligned_cols=142 Identities=21% Similarity=0.190 Sum_probs=100.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccc--------cc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TT 82 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~ 82 (166)
-...+|++++|.|++|||||+|.|.+..- .....+.++.++....+.++| +.+.+.||.|..+-... -.
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHH
Confidence 34568999999999999999999998654 345556777788888899998 66777899995432221 13
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEeccc
Q 031083 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMF 162 (166)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (166)
..++++|.+++|+|.+.+.+-+...-+ . ..+.+.|+++|.||.|+...... ..+....+.+++.+|+++
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~~~d~~~~-~----~~~~~~~~i~v~NK~DL~~~~~~------~~~~~~~~~~~i~iSa~t 360 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLDKEDLALI-E----LLPKKKPIIVVLNKADLVSKIEL------ESEKLANGDAIISISAKT 360 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCchhhHHHH-H----hcccCCCEEEEEechhccccccc------chhhccCCCceEEEEecC
Confidence 456789999999999986332222211 1 33457899999999999443331 112222334789999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
|+++
T Consensus 361 ~~Gl 364 (454)
T COG0486 361 GEGL 364 (454)
T ss_pred ccCH
Confidence 9863
No 230
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.72 E-value=1e-17 Score=112.33 Aligned_cols=117 Identities=22% Similarity=0.405 Sum_probs=72.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEE-CCeEEEEEEEeCCCcccccccccc---ccccccE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTA---YYRGAMG 90 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~d~ 90 (166)
.-.|+++|+.|+|||+|+.+|..+...+...+. . ... .+.+ ....-.+.+.|+||+++.+..... +...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e--~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-E--NNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-S--EEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-c--CCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 457999999999999999999998765554443 2 121 1222 112235778899999988774444 3778999
Q ss_pred EEEEEECCC-hhhHHHHHHHHHHH-HH--hcCCCCcEEEEEeCCCCCCC
Q 031083 91 ILLVYDVTD-ESSFNNIRNWMRNI-DQ--HAADNVNKILVGNKADMDES 135 (166)
Q Consensus 91 ~i~v~d~~~-~~s~~~~~~~~~~~-~~--~~~~~~piivv~~K~Dl~~~ 135 (166)
||||+|.+. +.....+.+++..+ .. .....+|++|++||.|+...
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 999999985 44555555544444 32 22458999999999999543
No 231
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.72 E-value=1.2e-16 Score=114.63 Aligned_cols=112 Identities=21% Similarity=0.159 Sum_probs=78.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC------------------CCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 78 (166)
+|+++|.+++|||||+++|....- +.+.....+++.....+.+++ +++.+|||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 689999999999999999974111 111222333344445555555 678899999998887
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031083 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (166)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~ 134 (166)
..+...++.+|++++|+|+.+...-. ....+..+.. .+.|+++++||+|+..
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 77888899999999999998743322 2233333332 3679999999999854
No 232
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.72 E-value=3.1e-16 Score=112.40 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=84.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCC--CC---------------Cc-----cccceeEeEEEEEEECCeEEEEEEEeCC
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSF--TT---------------SF-----ITTIGIDFKIRTIELDGKRIKLQIWDTA 72 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~--~~---------------~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (166)
..+|+++|.+++|||||+++|....- .. .+ ....++......+.+ ..+.+.+||+|
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~--~~~~i~liDTP 79 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY--RDCVINLLDTP 79 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee--CCEEEEEEECC
Confidence 36899999999999999999974211 00 00 011122222334444 44789999999
Q ss_pred CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC
Q 031083 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG 152 (166)
Q Consensus 73 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~ 152 (166)
|+.+|.......++.+|++|+|+|+++.... ....++..... .+.|+++++||+|+...... +-..++...++
T Consensus 80 G~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~a~~~---~~~~~l~~~l~ 152 (267)
T cd04169 80 GHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREGRDPL---ELLDEIEEELG 152 (267)
T ss_pred CchHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCCCCHH---HHHHHHHHHHC
Confidence 9988877667778899999999999874332 22344443322 36899999999998333221 11344455555
Q ss_pred CeEE
Q 031083 153 IKFF 156 (166)
Q Consensus 153 ~~~~ 156 (166)
.+.+
T Consensus 153 ~~~~ 156 (267)
T cd04169 153 IDCT 156 (267)
T ss_pred CCce
Confidence 4433
No 233
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.72 E-value=8.8e-17 Score=123.52 Aligned_cols=150 Identities=19% Similarity=0.154 Sum_probs=93.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC--CC-------------------------------CccccceeEeEEEEEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF--TT-------------------------------SFITTIGIDFKIRTIE 58 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~--~~-------------------------------~~~~~~~~~~~~~~~~ 58 (166)
....++|+++|..++|||||+++|+...- .. +.....+++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 45679999999999999999999975321 10 0011122333333333
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcc
Q 031083 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (166)
Q Consensus 59 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~ 138 (166)
. ...++.|+|+||++.|.......+..+|++++|+|+...-.-.. ...+...... . ..++++++||+|+......
T Consensus 104 ~--~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~l-g-~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 T--EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLL-G-IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred c--CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHh-C-CCceEEEEEeeccccchhH
Confidence 3 34678999999998886655555789999999999986422111 1111111111 1 2378999999998432221
Q ss_pred ---cchHHHHHHHHHhC----CeEEEEecccCCCC
Q 031083 139 ---VPTAKGQELADEYG----IKFFETVSMFNNEW 166 (166)
Q Consensus 139 ---~~~~~~~~~~~~~~----~~~~~~Sa~~~~~v 166 (166)
...+++..+.+..+ .+++.+||++|+|+
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni 213 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNV 213 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCc
Confidence 11223334444443 68999999999985
No 234
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.71 E-value=3.8e-16 Score=110.70 Aligned_cols=125 Identities=18% Similarity=0.209 Sum_probs=83.1
Q ss_pred ccccCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc------cc
Q 031083 5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER------FR 78 (166)
Q Consensus 5 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------~~ 78 (166)
.+|...+..+..+|+|+|+|++|||||.|.+++.+..+......+..-..-.+ +....++++|+||||.-. +.
T Consensus 62 esrde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~ 140 (379)
T KOG1423|consen 62 ESRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHH 140 (379)
T ss_pred cCCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHH
Confidence 34555678899999999999999999999999988866655554433332222 233457999999999221 11
Q ss_pred ------cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031083 79 ------TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (166)
Q Consensus 79 ------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~ 133 (166)
..-...+..+|.++.++|+++....-. ...+..+..+. ++|-++|.||.|..
T Consensus 141 l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~ 198 (379)
T KOG1423|consen 141 LMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKL 198 (379)
T ss_pred HHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcc
Confidence 111234567999999999997322111 11222333332 78999999999974
No 235
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=2.2e-16 Score=119.18 Aligned_cols=152 Identities=20% Similarity=0.162 Sum_probs=116.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCC---------------CCCccccceeEeEEEEEEE-CCeEEEEEEEeCCCc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSF---------------TTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQ 74 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~ 74 (166)
+.+...|+.|+..-..|||||..+|....- ..+....+++..+...+.+ ++..+.+.++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 347788999999999999999999975211 1122233333333333333 356688999999999
Q ss_pred cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCe
Q 031083 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIK 154 (166)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~ 154 (166)
..|......-+..|+++++++|++..-.-+.+..++..+.. +..+|.|+||+|++.+..+.-..++.++-.....+
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~ 211 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE 211 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999987666667777777754 77899999999997776665566666666666678
Q ss_pred EEEEecccCCCC
Q 031083 155 FFETVSMFNNEW 166 (166)
Q Consensus 155 ~~~~Sa~~~~~v 166 (166)
+..+|||+|.||
T Consensus 212 ~i~vSAK~G~~v 223 (650)
T KOG0462|consen 212 VIYVSAKTGLNV 223 (650)
T ss_pred eEEEEeccCccH
Confidence 999999999885
No 236
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.70 E-value=3.6e-16 Score=119.36 Aligned_cols=150 Identities=17% Similarity=0.128 Sum_probs=97.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC--CC-----------------------------CCCccccceeEeEEEEEEEC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD--SF-----------------------------TTSFITTIGIDFKIRTIELD 60 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 60 (166)
....++|+++|..++|||||+.+|+.. .. ..+.....+++.....+ .
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~--~ 81 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF--E 81 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE--c
Confidence 356799999999999999999998751 11 11111222333333333 3
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhh---H---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 031083 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---F---NNIRNWMRNIDQHAADNVN-KILVGNKADMD 133 (166)
Q Consensus 61 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iivv~~K~Dl~ 133 (166)
.....+.|+|+||+.+|.......+..+|++++|+|+++... + ...++.+..+... ++| ++++.||+|..
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDK 158 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccc
Confidence 344678899999999987777777889999999999986420 1 1222223333222 445 78999999952
Q ss_pred C-----CCcccchHHHHHHHHHhC-----CeEEEEecccCCCC
Q 031083 134 E-----SKRAVPTAKGQELADEYG-----IKFFETVSMFNNEW 166 (166)
Q Consensus 134 ~-----~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v 166 (166)
. +......+++.++.+..+ ++++.+|+.+|+|+
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni 201 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNM 201 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCc
Confidence 2 112223445555555544 57999999999985
No 237
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.70 E-value=1.3e-16 Score=120.68 Aligned_cols=146 Identities=21% Similarity=0.197 Sum_probs=91.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCC---------------------------------CCccccceeEeEEEEEEECCe
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFT---------------------------------TSFITTIGIDFKIRTIELDGK 62 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~ 62 (166)
+||+++|..++|||||+++|+...-. .+.....+++.....+..++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 58999999999999999999642110 01111122333334444443
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCccc---
Q 031083 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAV--- 139 (166)
Q Consensus 63 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~--- 139 (166)
.++.|+|+||++.|.......+..+|++++|+|+.....-. ....+..+... . ..++++++||+|+.+.....
T Consensus 80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~~~-~-~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIASLL-G-IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHHHc-C-CCcEEEEEEecccccchHHHHHH
Confidence 57889999999988665556778999999999998643211 11112222221 1 23689999999985322211
Q ss_pred chHHHHHHHHHhC---CeEEEEecccCCCC
Q 031083 140 PTAKGQELADEYG---IKFFETVSMFNNEW 166 (166)
Q Consensus 140 ~~~~~~~~~~~~~---~~~~~~Sa~~~~~v 166 (166)
..++...+.+..+ ++++++||++|+|+
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni 185 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNV 185 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCC
Confidence 1233444445555 47999999999874
No 238
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.70 E-value=8.3e-16 Score=110.61 Aligned_cols=140 Identities=20% Similarity=0.244 Sum_probs=89.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCC--------c----------cccceeEeEEEEEEECCeEEEEEEEeCCCccccc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTS--------F----------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 78 (166)
+|+++|.+|+|||||++++........ . ....+.......+.+++ +.+.+||+||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 589999999999999999975321100 0 01112222334445554 678899999998777
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEE
Q 031083 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFET 158 (166)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (166)
..+...+..+|++++|+|+++...... ...+..+.. .+.|+++++||+|+.... ..+....+...++.+++.+
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~---~~~p~iivvNK~D~~~~~---~~~~~~~l~~~~~~~~~~~ 151 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGT-EKLWEFADE---AGIPRIIFINKMDRERAD---FDKTLAALQEAFGRPVVPL 151 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCccCCCC---HHHHHHHHHHHhCCCeEEE
Confidence 777788899999999999998655432 233333322 267999999999984331 1233444555566554433
Q ss_pred --ecccCCC
Q 031083 159 --VSMFNNE 165 (166)
Q Consensus 159 --Sa~~~~~ 165 (166)
...+|++
T Consensus 152 ~ip~~~~~~ 160 (268)
T cd04170 152 QLPIGEGDD 160 (268)
T ss_pred EecccCCCc
Confidence 3444443
No 239
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=3.5e-16 Score=118.18 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=111.0
Q ss_pred CccccCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 031083 4 APARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83 (166)
Q Consensus 4 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 83 (166)
|+..+..-.++..-|.++|....|||||+.+|-+........-.++..+.--.+..+.. -.++|.|||||..|..++..
T Consensus 142 ~~a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaR 220 (683)
T KOG1145|consen 142 PEADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRAR 220 (683)
T ss_pred CccCHhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhc
Confidence 44444445667788999999999999999999987775544443443333333334322 57899999999999999999
Q ss_pred ccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHH---HHHHhC--CeE
Q 031083 84 YYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQE---LADEYG--IKF 155 (166)
Q Consensus 84 ~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~---~~~~~~--~~~ 155 (166)
.-.-+|++++|+.+.| +++. +.+......++|+++..||+|.++....-..++... ...++| .++
T Consensus 221 GA~vtDIvVLVVAadDGVmpQT~-------EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQv 293 (683)
T KOG1145|consen 221 GANVTDIVVLVVAADDGVMPQTL-------EAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQV 293 (683)
T ss_pred cCccccEEEEEEEccCCccHhHH-------HHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeE
Confidence 9999999999999998 4443 344444456899999999999865544322222222 223444 589
Q ss_pred EEEecccCCCC
Q 031083 156 FETVSMFNNEW 166 (166)
Q Consensus 156 ~~~Sa~~~~~v 166 (166)
++.||++|+|+
T Consensus 294 ipiSAl~g~nl 304 (683)
T KOG1145|consen 294 IPISALTGENL 304 (683)
T ss_pred EEeecccCCCh
Confidence 99999999985
No 240
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=5.4e-16 Score=117.19 Aligned_cols=146 Identities=20% Similarity=0.214 Sum_probs=107.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECC-eEEEEEEEeCCCccccccccccccccccEEE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
+..=|.++|....|||||+..+-.....+...-..+..+.-..+..+. ..-.++|.|||||+.|..++.....-+|++|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 345689999999999999999998877665555555555555555541 2346899999999999999999999999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHH---HHHHhC--CeEEEEecccCC
Q 031083 93 LVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQE---LADEYG--IKFFETVSMFNN 164 (166)
Q Consensus 93 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~---~~~~~~--~~~~~~Sa~~~~ 164 (166)
||++++| |++.+. +......++|+++..||+|.++........+.++ .+..++ ..++.+||++|+
T Consensus 84 LVVa~dDGv~pQTiEA-------I~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 84 LVVAADDGVMPQTIEA-------INHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEccCCcchhHHHH-------HHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 9999998 555443 3333344899999999999975444322222222 223343 589999999999
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
|+
T Consensus 157 Gi 158 (509)
T COG0532 157 GI 158 (509)
T ss_pred CH
Confidence 85
No 241
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.69 E-value=1.5e-15 Score=106.38 Aligned_cols=144 Identities=16% Similarity=0.141 Sum_probs=87.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccc-----------------------eeEeE---------------EEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTI-----------------------GIDFK---------------IRTIE 58 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~-----------------------~~~~~---------------~~~~~ 58 (166)
||+++|+.++|||||+++|..+.+........ +.+.. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999765543211100 00000 01111
Q ss_pred ECCeEEEEEEEeCCCcccccccccccc--ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031083 59 LDGKRIKLQIWDTAGQERFRTITTAYY--RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136 (166)
Q Consensus 59 ~~~~~~~~~i~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~ 136 (166)
.. ...+.+.|+||++.|.......+ ..+|++++|+|+..... .....++..+.. .+.|+++|.||+|+.+..
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHH
Confidence 22 24678899999988865443334 36899999999886433 222233333322 267899999999983321
Q ss_pred -cccchHHHHHHHHH--------------------------hCCeEEEEecccCCCC
Q 031083 137 -RAVPTAKGQELADE--------------------------YGIKFFETVSMFNNEW 166 (166)
Q Consensus 137 -~~~~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~v 166 (166)
.....+++.++.+. ...++|.+||.+|+|+
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi 211 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGL 211 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCH
Confidence 11222333333321 1248999999999874
No 242
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=1.2e-15 Score=96.46 Aligned_cols=106 Identities=24% Similarity=0.268 Sum_probs=69.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccc---------ccccccccc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITTAYYR 86 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~ 86 (166)
+|+++|.+|+|||||+|+|++... .....+..+.......+.+++.. +.++|+||...- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999998533 22222333333444566677754 568899994321 111233347
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 031083 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNK 129 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K 129 (166)
.+|++++|+|.+++.. +....+++.+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999877322 23334444442 47899999998
No 243
>PRK00049 elongation factor Tu; Reviewed
Probab=99.68 E-value=1.5e-15 Score=114.59 Aligned_cols=148 Identities=18% Similarity=0.157 Sum_probs=95.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC----------------CCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 75 (166)
....++|+++|..++|||||+++|++... ..+.....+.+. ....+.....++.+.|+||+.
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINT--AHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEee--eEEEEcCCCeEEEEEECCCHH
Confidence 46779999999999999999999986211 111122223333 333443344678899999998
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCcc--cchHHHHHHHHHhC
Q 031083 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKI-LVGNKADMDESKRA--VPTAKGQELADEYG 152 (166)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-vv~~K~Dl~~~~~~--~~~~~~~~~~~~~~ 152 (166)
.|.......+..+|++++|+|+.+... ......+..+.. .+.|.+ ++.||+|+.+.... ....++..+.+..+
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 776655666789999999999987422 122233333322 256865 68999998432111 12234555555543
Q ss_pred -----CeEEEEecccCCC
Q 031083 153 -----IKFFETVSMFNNE 165 (166)
Q Consensus 153 -----~~~~~~Sa~~~~~ 165 (166)
++++.+||++|.+
T Consensus 163 ~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 163 FPGDDTPIIRGSALKALE 180 (396)
T ss_pred CCccCCcEEEeecccccC
Confidence 6899999998753
No 244
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.68 E-value=5.7e-16 Score=115.30 Aligned_cols=137 Identities=20% Similarity=0.139 Sum_probs=93.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCccccc-c--------cccccc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-T--------ITTAYY 85 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~--------~~~~~~ 85 (166)
..|+++|.|++|||||+|+|.+.... ....|..+.+.......+.+.. +.+.||+|-+... . .....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999986552 3344555666777777777744 8888999965322 1 123345
Q ss_pred ccccEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-eEEEEeccc
Q 031083 86 RGAMGILLVYDVTDESSF--NNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETVSMF 162 (166)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (166)
..+|++|||+|....-+- +.+.+++. ..+.|+++|+||+|-. ..++...-.-.+|+ ..+.+||..
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr------~~~kpviLvvNK~D~~------~~e~~~~efyslG~g~~~~ISA~H 149 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILR------RSKKPVILVVNKIDNL------KAEELAYEFYSLGFGEPVPISAEH 149 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHH------hcCCCEEEEEEcccCc------hhhhhHHHHHhcCCCCceEeehhh
Confidence 679999999999873332 22333333 2267999999999962 11222222334554 789999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
|.|+
T Consensus 150 g~Gi 153 (444)
T COG1160 150 GRGI 153 (444)
T ss_pred ccCH
Confidence 9874
No 245
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.68 E-value=2.9e-15 Score=111.59 Aligned_cols=146 Identities=24% Similarity=0.233 Sum_probs=99.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeEEEEEEEeCCCc----------ccccccc-
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTIT- 81 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~- 81 (166)
..+||+++|.|++|||||+|++.+..- .....+.++.+.....+.++++. +.+.||.|- +.|....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 579999999999999999999998654 33445666677777888888855 667799992 2233222
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHH-HHHHHHh---C-CeEE
Q 031083 82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKG-QELADEY---G-IKFF 156 (166)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~-~~~~~~~---~-~~~~ 156 (166)
...+..+|++++|+|++.+-+-+..+- .-.+. ..+.++++|.||-|+.+... ...++. +++-+.+ + ++.+
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~i-a~~i~---~~g~~~vIvvNKWDl~~~~~-~~~~~~k~~i~~~l~~l~~a~i~ 329 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRI-AGLIE---EAGRGIVIVVNKWDLVEEDE-ATMEEFKKKLRRKLPFLDFAPIV 329 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHH-HHHHH---HcCCCeEEEEEccccCCchh-hHHHHHHHHHHHHhccccCCeEE
Confidence 334567999999999998766544332 12222 23678999999999855422 222222 2222233 2 6899
Q ss_pred EEecccCCCC
Q 031083 157 ETVSMFNNEW 166 (166)
Q Consensus 157 ~~Sa~~~~~v 166 (166)
.+||++|.++
T Consensus 330 ~iSA~~~~~i 339 (444)
T COG1160 330 FISALTGQGL 339 (444)
T ss_pred EEEecCCCCh
Confidence 9999999874
No 246
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.3e-15 Score=109.03 Aligned_cols=121 Identities=21% Similarity=0.233 Sum_probs=90.8
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCc-c----ccccc-cc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ-E----RFRTI-TT 82 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-~----~~~~~-~~ 82 (166)
+.-.+....|+|.|.|++|||||++.+...+......|+++-.+....+..++ .++++.||||. + +-+.+ .+
T Consensus 162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~q 239 (346)
T COG1084 162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQ 239 (346)
T ss_pred CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHH
Confidence 34455668899999999999999999999988888888888788888888776 45667799992 1 11111 11
Q ss_pred --cccc-cccEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031083 83 --AYYR-GAMGILLVYDVTDES--SFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (166)
Q Consensus 83 --~~~~-~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~ 133 (166)
..++ -.++|+|+||.+... +.+.-..++.++..... .|+++|.||+|+.
T Consensus 240 Ai~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~ 293 (346)
T COG1084 240 AILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIA 293 (346)
T ss_pred HHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEeccccc
Confidence 1122 267899999999855 45566678888888774 7999999999984
No 247
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.67 E-value=4.9e-16 Score=123.50 Aligned_cols=150 Identities=19% Similarity=0.158 Sum_probs=93.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCC---------------------------------ccccceeEeEEEEEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS---------------------------------FITTIGIDFKIRTIE 58 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~ 58 (166)
....++|+++|.+++|||||+++|+...-... .....+++.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 45568999999999999999999986321110 001112222233333
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcc
Q 031083 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (166)
Q Consensus 59 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~ 138 (166)
.++ .++.|+|+||++.|.......+..+|++++|+|+.....-. ....+..+... . ..++++++||+|+.+....
T Consensus 101 ~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~-~-~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 101 TPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLL-G-IRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred cCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHh-C-CCeEEEEEEecccccchhH
Confidence 333 56889999999887655555678999999999997643211 11111122211 1 2478999999998532211
Q ss_pred ---cchHHHHHHHHHhCC---eEEEEecccCCCC
Q 031083 139 ---VPTAKGQELADEYGI---KFFETVSMFNNEW 166 (166)
Q Consensus 139 ---~~~~~~~~~~~~~~~---~~~~~Sa~~~~~v 166 (166)
....++.++.+.+++ +++.+||++|+|+
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni 209 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNV 209 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCc
Confidence 112334445556664 6999999999985
No 248
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=9.7e-16 Score=114.24 Aligned_cols=149 Identities=22% Similarity=0.221 Sum_probs=113.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcC---------------CCCCCccccceeEeEEEEEEE---CCeEEEEEEEeCC
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDD---------------SFTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTA 72 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~ 72 (166)
+.....|+.++..-..|||||..|++.. ...-+....+++..+...+.+ +|..+.+.+.|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 4556778999999999999999999752 222233344444444444444 4577999999999
Q ss_pred CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC
Q 031083 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG 152 (166)
Q Consensus 73 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~ 152 (166)
||..|......-+..|.+.++++|++..-.-+.+...|..+.+ +..++-|.||+||+..+.+... +++..-+|
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adpervk---~eIe~~iG 157 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADPERVK---QEIEDIIG 157 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCHHHHH---HHHHHHhC
Confidence 9999999999999999999999999986666667777777754 7889999999999766554333 34445556
Q ss_pred C---eEEEEecccCCCC
Q 031083 153 I---KFFETVSMFNNEW 166 (166)
Q Consensus 153 ~---~~~~~Sa~~~~~v 166 (166)
+ ..+.+|||+|.||
T Consensus 158 id~~dav~~SAKtG~gI 174 (603)
T COG0481 158 IDASDAVLVSAKTGIGI 174 (603)
T ss_pred CCcchheeEecccCCCH
Confidence 4 5789999999986
No 249
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.2e-15 Score=102.72 Aligned_cols=145 Identities=21% Similarity=0.286 Sum_probs=93.1
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCC----------cccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRT 79 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~ 79 (166)
-+.+....|+++|.+++|||||||+|++..-......|.|.+.....+.+++. +.+.|.|| ++....
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence 34456679999999999999999999997754455555566677777777764 67779999 222333
Q ss_pred ccccccc---cccEEEEEEECCChhhH-H-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC--
Q 031083 80 ITTAYYR---GAMGILLVYDVTDESSF-N-NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-- 152 (166)
Q Consensus 80 ~~~~~~~---~~d~~i~v~d~~~~~s~-~-~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~-- 152 (166)
+...|++ +..++++++|+..+..- + ++.+|+... +.|+++++||+|....... .......++.++
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~------~i~~~vv~tK~DKi~~~~~--~k~l~~v~~~l~~~ 167 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL------GIPVIVVLTKADKLKKSER--NKQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc------CCCeEEEEEccccCChhHH--HHHHHHHHHHhcCC
Confidence 3333443 36789999998874442 1 233444443 8899999999998432111 111233333332
Q ss_pred --Ce--EEEEecccCCC
Q 031083 153 --IK--FFETVSMFNNE 165 (166)
Q Consensus 153 --~~--~~~~Sa~~~~~ 165 (166)
.. ++..|+.++.|
T Consensus 168 ~~~~~~~~~~ss~~k~G 184 (200)
T COG0218 168 PPDDQWVVLFSSLKKKG 184 (200)
T ss_pred CCccceEEEEecccccC
Confidence 22 66677776655
No 250
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.65 E-value=3.9e-15 Score=115.50 Aligned_cols=136 Identities=17% Similarity=0.166 Sum_probs=87.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhc--CCCC---------------C-----CccccceeEeEEEEEEECCeEEEEEE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSD--DSFT---------------T-----SFITTIGIDFKIRTIELDGKRIKLQI 68 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~--~~~~---------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~i 68 (166)
+.....+|+++|..++|||||+++|+. +... . +.....++......+.+++ +.+.+
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~--~~inl 83 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD--CLINL 83 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC--EEEEE
Confidence 345678999999999999999999963 1100 0 0001112222233444444 77999
Q ss_pred EeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHH
Q 031083 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELA 148 (166)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~ 148 (166)
|||||+..|.......++.+|++|+|+|+++.... ....++..... .++|+++++||+|+..... .+-..++.
T Consensus 84 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~a~~---~~~l~~i~ 156 (526)
T PRK00741 84 LDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDGREP---LELLDEIE 156 (526)
T ss_pred EECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccccCH---HHHHHHHH
Confidence 99999998887777788999999999999874322 23344433322 3789999999999843322 22234444
Q ss_pred HHhCCeE
Q 031083 149 DEYGIKF 155 (166)
Q Consensus 149 ~~~~~~~ 155 (166)
..++++.
T Consensus 157 ~~l~~~~ 163 (526)
T PRK00741 157 EVLGIAC 163 (526)
T ss_pred HHhCCCC
Confidence 5555443
No 251
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.65 E-value=2.1e-15 Score=120.92 Aligned_cols=143 Identities=17% Similarity=0.093 Sum_probs=94.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCC------------------CCccccceeEeEEEEEEECCeEEEEEEEeCCC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 73 (166)
.+...+|+++|..++|||||+++|....-. .+....++++.....+.+++ +++.+|||||
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG 84 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPG 84 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCC
Confidence 456779999999999999999999742110 01112233444455556655 6799999999
Q ss_pred ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC
Q 031083 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI 153 (166)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (166)
+..+.......++.+|++++|+|+.+....... .++..+.. .+.|+++++||+|+..... .....++...++.
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~~~---~~~~~~i~~~l~~ 157 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGANF---LRVVNQIKQRLGA 157 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCCCH---HHHHHHHHHHhCC
Confidence 988877778889999999999999985444322 33333332 2679999999999854322 1223444444443
Q ss_pred ----eEEEEecccC
Q 031083 154 ----KFFETVSMFN 163 (166)
Q Consensus 154 ----~~~~~Sa~~~ 163 (166)
..+.+|+..+
T Consensus 158 ~~~~~~ipis~~~~ 171 (689)
T TIGR00484 158 NAVPIQLPIGAEDN 171 (689)
T ss_pred CceeEEeccccCCC
Confidence 2345565544
No 252
>PRK13351 elongation factor G; Reviewed
Probab=99.64 E-value=1.2e-15 Score=122.43 Aligned_cols=133 Identities=17% Similarity=0.232 Sum_probs=89.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCC-------------CCc-----cccceeEeEEEEEEECCeEEEEEEEeCCC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-------------TSF-----ITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 73 (166)
.+...||+++|..++|||||+++|...... ..+ ....++......+.++ .+.+.+||+||
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG 82 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTPG 82 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECCC
Confidence 356789999999999999999999852110 000 0111222223344444 47899999999
Q ss_pred ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC
Q 031083 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI 153 (166)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (166)
+.++...+..+++.+|++++|+|+++..+......| ..+.. .+.|+++++||+|+...... .-.+++...++.
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~~~~~---~~~~~i~~~l~~ 155 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVGADLF---KVLEDIEERFGK 155 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCCCCHH---HHHHHHHHHHCC
Confidence 998888888899999999999999987665544333 33332 26899999999998543322 223444444554
No 253
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.64 E-value=4e-15 Score=108.84 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=58.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEE---------------------CC-eEEEEEEEeCCCc-
Q 031083 18 LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL---------------------DG-KRIKLQIWDTAGQ- 74 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~g~- 74 (166)
|+++|.+++|||||++++++........|.++++.......+ ++ ..+.+.+||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999998765444444444444333322 22 2367999999996
Q ss_pred ---ccccccccc---ccccccEEEEEEECCC
Q 031083 75 ---ERFRTITTA---YYRGAMGILLVYDVTD 99 (166)
Q Consensus 75 ---~~~~~~~~~---~~~~~d~~i~v~d~~~ 99 (166)
.++..+... .++++|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 334444334 4889999999999973
No 254
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.63 E-value=3.8e-16 Score=99.54 Aligned_cols=113 Identities=28% Similarity=0.344 Sum_probs=79.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCcc-ccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
+||+++|..|+|||+|+.++....+...+. ++.+ +........+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998877754433 3222 222234456778999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|+.++.++++.+ |...+....+.++|+++++||.|+.+. .....++ +..++++|+++|.|+
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~-~~~~~~~--------~~~~~~~s~~~~~~~ 114 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEE-RQVATEE--------GLEFAETSAKTPEEG 114 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhh-CcCCHHH--------HHHHHHHhCCCcchh
Confidence 999999998766 766666555567899999999998332 2333332 334556677777764
No 255
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.63 E-value=3.9e-15 Score=107.11 Aligned_cols=148 Identities=16% Similarity=0.189 Sum_probs=98.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccccc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YRGAM 89 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~d 89 (166)
.|.++|.|++|||||++.+.+.+......++++.......+.+.+ .-.+++-|.||.-+ -..+-..| ++.|.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 467899999999999999999877666667777767666666633 34689999999321 11122333 45689
Q ss_pred EEEEEEECCChh---hHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCe-EEEEecccC
Q 031083 90 GILLVYDVTDES---SFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIK-FFETVSMFN 163 (166)
Q Consensus 90 ~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~--~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 163 (166)
++++|+|++..+ ..+....+..++..+.. .+.|.+||+||+|++.... ......+.+.+..+.. ++.+||.++
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e-~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE-ELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHH-HHHHHHHHHHHhcCCCcceeeehhcc
Confidence 999999999754 35566666666655432 3679999999999733321 1122233344444432 222999998
Q ss_pred CCC
Q 031083 164 NEW 166 (166)
Q Consensus 164 ~~v 166 (166)
+++
T Consensus 319 ~g~ 321 (369)
T COG0536 319 EGL 321 (369)
T ss_pred cCH
Confidence 874
No 256
>PLN03127 Elongation factor Tu; Provisional
Probab=99.62 E-value=1.3e-14 Score=110.77 Aligned_cols=145 Identities=16% Similarity=0.123 Sum_probs=89.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC------C----------CCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD------S----------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 75 (166)
....++|+++|..++|||||+++|.+. . ...+..+..+++.. ...++....++.|.|+||+.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~--~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATA--HVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeee--EEEEcCCCeEEEEEECCCcc
Confidence 457799999999999999999999721 1 11222233344433 33444444678999999998
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCcc--cchHHHHHHHHHh-
Q 031083 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKRA--VPTAKGQELADEY- 151 (166)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~~K~Dl~~~~~~--~~~~~~~~~~~~~- 151 (166)
.|-.........+|++++|+|+.+...- .....+..+.. .+.| ++++.||+|+.+.... ....++.++....
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 7765555556679999999999864221 12222222222 2567 5788999999532111 1112344444433
Q ss_pred ----CCeEEEEeccc
Q 031083 152 ----GIKFFETVSMF 162 (166)
Q Consensus 152 ----~~~~~~~Sa~~ 162 (166)
.++++.+|+.+
T Consensus 212 ~~~~~vpiip~Sa~s 226 (447)
T PLN03127 212 FPGDEIPIIRGSALS 226 (447)
T ss_pred CCCCcceEEEeccce
Confidence 25788888763
No 257
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.62 E-value=4.8e-15 Score=115.05 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=80.4
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhc--CCCCC------C------------ccccceeEeEEEEEEECCeEEEEEEE
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSD--DSFTT------S------------FITTIGIDFKIRTIELDGKRIKLQIW 69 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~--~~~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~i~ 69 (166)
.+.....+|+++|.+++|||||+++|+. +.... . .....++.+......++...+++.+|
T Consensus 6 ~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inli 85 (527)
T TIGR00503 6 KEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLL 85 (527)
T ss_pred hhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEE
Confidence 3446778999999999999999999853 11100 0 00111222333333333344789999
Q ss_pred eCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031083 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (166)
Q Consensus 70 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~ 133 (166)
|+||+..|.......++.+|++|+|+|+++.-. .....++..... .+.|+++++||+|+.
T Consensus 86 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 86 DTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred ECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 999998887766777899999999999987321 123344443322 368999999999984
No 258
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.62 E-value=7.8e-15 Score=101.04 Aligned_cols=110 Identities=14% Similarity=0.194 Sum_probs=66.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCcccccee-EeE--EEEEEECCeEEEEEEEeCCCcccccc-----ccccccc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGI-DFK--IRTIELDGKRIKLQIWDTAGQERFRT-----ITTAYYR 86 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~ 86 (166)
++||+++|.+|+|||||+|.+.+...........+. ... ...+...+ ...+.+||+||...... +....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 478999999999999999999986543322222221 011 11111111 23689999999643211 2223356
Q ss_pred cccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031083 87 GAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM 132 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~~K~Dl 132 (166)
++|+++++.+. ++... ..+++.+... +.|+++|+||+|+
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~ 119 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDR 119 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccc
Confidence 78988887432 23333 3444545443 5689999999998
No 259
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=7.5e-15 Score=108.03 Aligned_cols=151 Identities=18% Similarity=0.181 Sum_probs=101.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC--CC-----------------------------CCCccccceeEeEEEEEEEC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD--SF-----------------------------TTSFITTIGIDFKIRTIELD 60 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 60 (166)
...+++++++|...+|||||+-+|+.. .. .++... +..+......+.
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERer--GvTi~~~~~~fe 81 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERER--GVTIDVAHSKFE 81 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhc--ceEEEEEEEEee
Confidence 467899999999999999999998641 11 111122 223334444455
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhh---HHHH--HHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031083 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FNNI--RNWMRNIDQHAADNVNKILVGNKADMDES 135 (166)
Q Consensus 61 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~--~~~~~~~~~~~~~~~piivv~~K~Dl~~~ 135 (166)
...+.+++.|+||+..|-........++|+.|||+|+.+.+. |... .+...-+.+..+ --.+|++.||+|..+
T Consensus 82 t~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~- 159 (428)
T COG5256 82 TDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVS- 159 (428)
T ss_pred cCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccc-
Confidence 556789999999998888877778889999999999998632 1111 111122222222 335899999999954
Q ss_pred Cccc----chHHHHHHHHHhC-----CeEEEEecccCCCC
Q 031083 136 KRAV----PTAKGQELADEYG-----IKFFETVSMFNNEW 166 (166)
Q Consensus 136 ~~~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v 166 (166)
..+. ...++..+.+.+| ++|+.+|+..|+|+
T Consensus 160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl 199 (428)
T COG5256 160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNL 199 (428)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcc
Confidence 3322 2334455666665 56999999999986
No 260
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.60 E-value=1.8e-14 Score=103.21 Aligned_cols=155 Identities=13% Similarity=0.254 Sum_probs=108.7
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEE--CCeEEEEEEEeCCCccccccccccccc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL--DGKRIKLQIWDTAGQERFRTITTAYYR 86 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~ 86 (166)
+.+-+..-+|+|+|+.++||||||.+|.+.. .+.+..+.++..-.+.- .+...++.+|-+.|...+..+....+.
T Consensus 46 ~sklpsgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ 122 (473)
T KOG3905|consen 46 RSKLPSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALP 122 (473)
T ss_pred cccCCCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccc
Confidence 3344566789999999999999999999876 23334444454444332 333478999999997655555444343
Q ss_pred c----ccEEEEEEECCChhh-HHHHHHHHHHHHHhc--------------------------------------------
Q 031083 87 G----AMGILLVYDVTDESS-FNNIRNWMRNIDQHA-------------------------------------------- 117 (166)
Q Consensus 87 ~----~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~-------------------------------------------- 117 (166)
. -..+|++.|+++|.. ++.+..|...+.++.
T Consensus 123 ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~ 202 (473)
T KOG3905|consen 123 ATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGS 202 (473)
T ss_pred ccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccC
Confidence 3 246999999999965 567777765443221
Q ss_pred -----------------CCCCcEEEEEeCCCCC----------CCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 118 -----------------ADNVNKILVGNKADMD----------ESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 118 -----------------~~~~piivv~~K~Dl~----------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+..+|+++|+||+|.. +++.......++.||.++|..++.+|+|+..|+
T Consensus 203 ~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNi 278 (473)
T KOG3905|consen 203 SADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNI 278 (473)
T ss_pred ccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccch
Confidence 1137899999999972 233334556789999999999999999998874
No 261
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.60 E-value=5.5e-14 Score=100.59 Aligned_cols=95 Identities=22% Similarity=0.217 Sum_probs=74.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc----cc---ccccc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FR---TITTA 83 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~---~~~~~ 83 (166)
+.+....++++|+|++|||||++.|++........++++.+.....+.+++ .++++.|+||.-. -. ...-.
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vls 136 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLS 136 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeee
Confidence 356678899999999999999999999888777778888888888889987 6788889998321 11 12345
Q ss_pred ccccccEEEEEEECCChhh-HHHHH
Q 031083 84 YYRGAMGILLVYDVTDESS-FNNIR 107 (166)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s-~~~~~ 107 (166)
..++||++++|+|+....+ .+.+.
T Consensus 137 v~R~ADlIiiVld~~~~~~~~~~i~ 161 (365)
T COG1163 137 VARNADLIIIVLDVFEDPHHRDIIE 161 (365)
T ss_pred eeccCCEEEEEEecCCChhHHHHHH
Confidence 6789999999999997555 44433
No 262
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.60 E-value=5.7e-15 Score=112.71 Aligned_cols=154 Identities=11% Similarity=0.095 Sum_probs=94.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCC---CCCccccceeEeEEEEE---------------EECC-----------
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSF---TTSFITTIGIDFKIRTI---------------ELDG----------- 61 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~----------- 61 (166)
..+..++|.++|.-..|||||++.|++-.. ..+.....+++...... ..+.
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 457789999999999999999999997322 22222222211111100 0000
Q ss_pred -----eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031083 62 -----KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136 (166)
Q Consensus 62 -----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~ 136 (166)
....+.|.|+||++.|.......+..+|++++|+|+.+.......++.+..+. ... -.+++++.||+|+.+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~lg-i~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IMK-LKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-HcC-CCcEEEEEecccccCHH
Confidence 02368899999999887766666778999999999997411111122222222 111 23689999999984322
Q ss_pred c-ccchHHHHHHHHH---hCCeEEEEecccCCCC
Q 031083 137 R-AVPTAKGQELADE---YGIKFFETVSMFNNEW 166 (166)
Q Consensus 137 ~-~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v 166 (166)
. ....++++++.+. .+.+++.+||++|+|+
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI 221 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNI 221 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCH
Confidence 1 1223344444433 2578999999999874
No 263
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.58 E-value=1.4e-14 Score=116.49 Aligned_cols=123 Identities=19% Similarity=0.175 Sum_probs=81.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC---------------CCCCC---ccccceeEeEEEEEEECCeEEEEEEEeCCC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD---------------SFTTS---FITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 73 (166)
.+...||+++|..++|||||+++|... .+.+. ...|.........+..++..+++.+|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 456789999999999999999999742 11111 111211111222233556678999999999
Q ss_pred ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcc
Q 031083 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (166)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~ 138 (166)
+..|.......++.+|++++|+|+.+.-..+. ...+.... ..+.|+++++||+|.......
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~---~~~~p~ivviNKiD~~~~~~~ 156 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQAL---KENVKPVLFINKVDRLINELK 156 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHH---HcCCCEEEEEEChhcccchhc
Confidence 99888777788899999999999987432222 12222222 235688999999998544333
No 264
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=2.3e-14 Score=115.01 Aligned_cols=118 Identities=19% Similarity=0.153 Sum_probs=83.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC------------------CCCccccceeEeEEEEEEECCeEEEEEEEeCCC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 73 (166)
.+...+|+++|..++|||||+++|....- ..+.....+++.....+.+++ .++.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence 45678999999999999999999974210 011223334444455566655 6789999999
Q ss_pred ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031083 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135 (166)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~ 135 (166)
+..+...+...++.+|++++|+|+.+.-.... ...+..+.. .+.|+++++||+|+...
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 98777777888899999999999987543222 233333332 36799999999999543
No 265
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.56 E-value=1.4e-13 Score=103.52 Aligned_cols=83 Identities=23% Similarity=0.293 Sum_probs=59.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEE---------------------C-CeEEEEEEEeCCC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL---------------------D-GKRIKLQIWDTAG 73 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~g 73 (166)
++|+++|.+++|||||+|+|++........+..+++.......+ + .....+.+||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 58999999999999999999998775544455555555433332 1 1236789999999
Q ss_pred c----cccccccccc---cccccEEEEEEECC
Q 031083 74 Q----ERFRTITTAY---YRGAMGILLVYDVT 98 (166)
Q Consensus 74 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 98 (166)
. .....+...+ ++++|++++|+|++
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2233333344 78999999999997
No 266
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.55 E-value=1.4e-13 Score=94.79 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=84.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCcc--ccceeEeEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFI--TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----------ITT 82 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~ 82 (166)
++|+++|.+|+|||||+|.+++........ +..+.........+++ .++.++||||-..... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999865432221 1122233333444555 4688889999432211 011
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCcc-----cchHHHHHHHHHhCCeE
Q 031083 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD--NVNKILVGNKADMDESKRA-----VPTAKGQELADEYGIKF 155 (166)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~~K~Dl~~~~~~-----~~~~~~~~~~~~~~~~~ 155 (166)
......|++++|+++.+ -+- .....++.+.+..+. -.++++|.|+.|....... ......+.+.+.++-.|
T Consensus 79 ~~~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 22457899999999887 221 223334444433321 2478899999996433211 11245666777777777
Q ss_pred EEEecc
Q 031083 156 FETVSM 161 (166)
Q Consensus 156 ~~~Sa~ 161 (166)
+..+.+
T Consensus 157 ~~f~~~ 162 (196)
T cd01852 157 VAFNNK 162 (196)
T ss_pred EEEeCC
Confidence 666554
No 267
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.55 E-value=2.4e-13 Score=103.66 Aligned_cols=148 Identities=19% Similarity=0.276 Sum_probs=111.2
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
.......+.+.++|+.++|||.|++.+.+..+...+..+....+..+.+...+....+.+.|.+-. ....+.... ..|
T Consensus 419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~c 496 (625)
T KOG1707|consen 419 KQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AAC 496 (625)
T ss_pred ccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-cee
Confidence 344667899999999999999999999998887766666666666677777777778888888754 222222222 789
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCe-EEEEecc
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIK-FFETVSM 161 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~ 161 (166)
|+++++||.+++.+|+.+...++..... .++|+++|++|+|+.+.......+. .+++++++++ -...|.+
T Consensus 497 Dv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~ 567 (625)
T KOG1707|consen 497 DVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSK 567 (625)
T ss_pred eeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccC
Confidence 9999999999999999888777665444 4899999999999944443344444 8999999972 3444444
No 268
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.54 E-value=9.2e-14 Score=100.44 Aligned_cols=150 Identities=19% Similarity=0.203 Sum_probs=103.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC---------------------------------CCCccccceeEeEEEEEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF---------------------------------TTSFITTIGIDFKIRTIE 58 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~ 58 (166)
....++++-+|...-||||||-||+.+.- ..+..+.+++++-++.+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 34568999999999999999999976311 123334445555555444
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcc
Q 031083 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (166)
Q Consensus 59 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~ 138 (166)
- .+.+|.+-|+|||++|.......-..||+.|+++|+.. ...+-.+....+..... =..+++..||+||.+-..+
T Consensus 83 T--~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 83 T--EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred c--ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHH
Confidence 3 34578899999999999888888888999999999854 22111112222222222 2358999999999543332
Q ss_pred ---cchHHHHHHHHHhCC---eEEEEecccCCCC
Q 031083 139 ---VPTAKGQELADEYGI---KFFETVSMFNNEW 166 (166)
Q Consensus 139 ---~~~~~~~~~~~~~~~---~~~~~Sa~~~~~v 166 (166)
....+-..|+.++++ .+++.||..|+||
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV 191 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNV 191 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCcc
Confidence 234556778899884 7999999999997
No 269
>PRK00007 elongation factor G; Reviewed
Probab=99.54 E-value=9.2e-14 Score=111.54 Aligned_cols=144 Identities=17% Similarity=0.108 Sum_probs=92.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhc--CCCC----------------CCccccceeEeEEEEEEECCeEEEEEEEeCC
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSD--DSFT----------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (166)
..+...+|+++|..++|||||+++|.. +... .+.....+++.....+.+++ .++.+.|||
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTP 83 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTP 83 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCC
Confidence 356678999999999999999999973 1110 01223334444445566655 678889999
Q ss_pred CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC
Q 031083 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG 152 (166)
Q Consensus 73 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~ 152 (166)
|+..+.......+..+|++++|+|+...-.... ...+..+.. .+.|+++++||+|+..... ..-.+++.+.++
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~---~~~p~iv~vNK~D~~~~~~---~~~~~~i~~~l~ 156 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK---YKVPRIAFVNKMDRTGADF---YRVVEQIKDRLG 156 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH---cCCCEEEEEECCCCCCCCH---HHHHHHHHHHhC
Confidence 988776666667888999999999887543333 223333332 2678999999999854331 222344444444
Q ss_pred C----eEEEEecccC
Q 031083 153 I----KFFETVSMFN 163 (166)
Q Consensus 153 ~----~~~~~Sa~~~ 163 (166)
. ..+.+|+..+
T Consensus 157 ~~~~~~~ipisa~~~ 171 (693)
T PRK00007 157 ANPVPIQLPIGAEDD 171 (693)
T ss_pred CCeeeEEecCccCCc
Confidence 3 3345566554
No 270
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.52 E-value=3.5e-14 Score=106.58 Aligned_cols=157 Identities=18% Similarity=0.122 Sum_probs=107.2
Q ss_pred ccCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc-----cccccc
Q 031083 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTIT 81 (166)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~ 81 (166)
+.+...+....++++|.|++|||||++.+........+.++++...+...+.+.- .++.+.||||.- .-+.+-
T Consensus 160 rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IE 237 (620)
T KOG1490|consen 160 RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIE 237 (620)
T ss_pred cCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHH
Confidence 4445567778999999999999999999998888777777777666666666544 567788999921 111111
Q ss_pred ccc---c-ccccEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc--ccchHHHHHHHHHhCC
Q 031083 82 TAY---Y-RGAMGILLVYDVTDESS--FNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR--AVPTAKGQELADEYGI 153 (166)
Q Consensus 82 ~~~---~-~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~--~~~~~~~~~~~~~~~~ 153 (166)
..- + .--.+|+|+.|++.... .++-..++..+...+. +.|.|+|+||+|+...+. +...+-.+.+...-++
T Consensus 238 mqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v 316 (620)
T KOG1490|consen 238 MQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV 316 (620)
T ss_pred HHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCc
Confidence 111 1 11246999999998554 4444567888876654 679999999999832221 2222223444445558
Q ss_pred eEEEEecccCCCC
Q 031083 154 KFFETVSMFNNEW 166 (166)
Q Consensus 154 ~~~~~Sa~~~~~v 166 (166)
+++++|+.+.+||
T Consensus 317 ~v~~tS~~~eegV 329 (620)
T KOG1490|consen 317 KVVQTSCVQEEGV 329 (620)
T ss_pred eEEEecccchhce
Confidence 9999999999886
No 271
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.52 E-value=1.6e-13 Score=100.81 Aligned_cols=70 Identities=21% Similarity=0.308 Sum_probs=57.2
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEECCCh----------hhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCC
Q 031083 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWMRNIDQH-AADNVNKILVGNKAD 131 (166)
Q Consensus 63 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~piivv~~K~D 131 (166)
.+.+.+||++|+...+..|..++.++++++||+|+++. +.+.+....+..+... ...+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 36789999999999999999999999999999999984 4555555566655442 235899999999999
Q ss_pred C
Q 031083 132 M 132 (166)
Q Consensus 132 l 132 (166)
+
T Consensus 240 ~ 240 (317)
T cd00066 240 L 240 (317)
T ss_pred H
Confidence 6
No 272
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=6.5e-14 Score=94.63 Aligned_cols=113 Identities=20% Similarity=0.313 Sum_probs=83.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccc---cccEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR---GAMGIL 92 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~~i 92 (166)
-.|+++|+.+||||+|.-+|..+.+.....+ ++.....+.+.+.. +++.|.||+++.+.....+++ .+-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 5799999999999999999999866554443 34455555555544 677799999998886666666 789999
Q ss_pred EEEECCC-hhhHHHHHHH-HHHHHHh--cCCCCcEEEEEeCCCCC
Q 031083 93 LVYDVTD-ESSFNNIRNW-MRNIDQH--AADNVNKILVGNKADMD 133 (166)
Q Consensus 93 ~v~d~~~-~~s~~~~~~~-~~~~~~~--~~~~~piivv~~K~Dl~ 133 (166)
||+|... +.....+..+ |..+... .....|+++++||.|+.
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 9999775 3334444444 4444444 35689999999999984
No 273
>PTZ00258 GTP-binding protein; Provisional
Probab=99.51 E-value=5.7e-13 Score=99.49 Aligned_cols=89 Identities=20% Similarity=0.187 Sum_probs=65.3
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeE---------------EEEEEEeCCCc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQ 74 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~ 74 (166)
+....-++|.++|.|++|||||+|+|.+........|.++.+.....+.+.+.. .++.+.|+||.
T Consensus 16 ~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 16 GRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred ccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 334566899999999999999999999877666666777777777777665433 24889999994
Q ss_pred ccc----cc---ccccccccccEEEEEEECC
Q 031083 75 ERF----RT---ITTAYYRGAMGILLVYDVT 98 (166)
Q Consensus 75 ~~~----~~---~~~~~~~~~d~~i~v~d~~ 98 (166)
..- .. .....++.+|++++|+|+.
T Consensus 96 v~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 96 VKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 311 11 1223456799999999985
No 274
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.51 E-value=5.4e-13 Score=94.69 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=74.2
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCC-ccccceeEeEEEEEEECCeEEEEEEEeCCCccccc--c-c----
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--T-I---- 80 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-~---- 80 (166)
++.....++|+|+|.+|+|||||+|.+++...... .....+..........++ ..+.+|||||..... . .
T Consensus 25 ~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~ 102 (249)
T cd01853 25 KEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKI 102 (249)
T ss_pred hhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHH
Confidence 35567789999999999999999999998764322 111222233333444555 568999999954321 0 0
Q ss_pred ---cccccc--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCC
Q 031083 81 ---TTAYYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD--NVNKILVGNKADMD 133 (166)
Q Consensus 81 ---~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~~K~Dl~ 133 (166)
...++. ..|++++|..++....-..-..+++.+.+..+. -.++++|.||+|..
T Consensus 103 ~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 103 LSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 112232 578888887666532111222344444433221 14699999999983
No 275
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.49 E-value=3.8e-14 Score=99.45 Aligned_cols=118 Identities=22% Similarity=0.344 Sum_probs=80.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEE-EEECCeEEEEEEEeCCCccc-------ccccccc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRT-IELDGKRIKLQIWDTAGQER-------FRTITTA 83 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~-------~~~~~~~ 83 (166)
....++|+++|.+|+|||||||+|+.+...+...-..+.+..... .++++ -.+++||+||-.+ |+.+...
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 456799999999999999999999976654443222222222222 23344 4699999999433 6666777
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031083 84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (166)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~ 133 (166)
++...|.++++.++.|++---... +++.+..... +.+++++.|++|..
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~-f~~dVi~~~~-~~~~i~~VtQ~D~a 161 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDED-FLRDVIILGL-DKRVLFVVTQADRA 161 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHH-HHHHHHHhcc-CceeEEEEehhhhh
Confidence 888899999999999865432223 3333332222 46899999999983
No 276
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.49 E-value=3.3e-13 Score=99.94 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=56.8
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCCh----------hhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCC
Q 031083 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWMRNIDQ-HAADNVNKILVGNKADM 132 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl 132 (166)
+.+.+||.+|+...+..|..++.+++++|||+|+++. ..+++....+..+.. ....+.|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 5688999999999999999999999999999999973 345555566666644 23357999999999997
No 277
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.48 E-value=1.6e-12 Score=99.33 Aligned_cols=151 Identities=15% Similarity=0.285 Sum_probs=103.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEEC--CeEEEEEEEeCCCcccccccccccccc--
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRG-- 87 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~-- 87 (166)
....-.|+|+|..++||||||.+|.+.. .+.++.+.+|....+.-+ +...++.+|-+.|...+..+....+..
T Consensus 22 ~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~ 98 (472)
T PF05783_consen 22 LPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPEN 98 (472)
T ss_pred CCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccc
Confidence 3455799999999999999999997644 344555666665554332 233578999999877777666544442
Q ss_pred --ccEEEEEEECCChhhH-HHHHHHHHHHHHh-------------------------------c----------------
Q 031083 88 --AMGILLVYDVTDESSF-NNIRNWMRNIDQH-------------------------------A---------------- 117 (166)
Q Consensus 88 --~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~-------------------------------~---------------- 117 (166)
--.+|+|.|++.|..+ +.+..|+..+..+ .
T Consensus 99 l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~ 178 (472)
T PF05783_consen 99 LPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSD 178 (472)
T ss_pred ccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccc
Confidence 3469999999998874 4555554322110 0
Q ss_pred ---------------CCCCcEEEEEeCCCCCC----------CCcccchHHHHHHHHHhCCeEEEEecccCCC
Q 031083 118 ---------------ADNVNKILVGNKADMDE----------SKRAVPTAKGQELADEYGIKFFETVSMFNNE 165 (166)
Q Consensus 118 ---------------~~~~piivv~~K~Dl~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (166)
+-.+|++||++|+|... +......+-++.||.++|+.++.||++...|
T Consensus 179 ~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n 251 (472)
T PF05783_consen 179 DESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKN 251 (472)
T ss_pred cccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeecccccc
Confidence 00379999999999722 1112334557889999999999999988765
No 278
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.47 E-value=8.2e-13 Score=108.63 Aligned_cols=100 Identities=20% Similarity=0.174 Sum_probs=70.3
Q ss_pred cHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCe----------------EEEEEEEeCCCccccccccccccccccE
Q 031083 27 GKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGK----------------RIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 27 GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
+||||+.++.+........-.++..+....+..+.. .-.+.||||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 499999999987765544444444443333333210 0128999999999998888778888999
Q ss_pred EEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031083 91 ILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (166)
Q Consensus 91 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~ 133 (166)
+++|+|+++ +.+++.+. .+.. .+.|+++|+||+|+.
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLI 591 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCc
Confidence 999999987 55554443 1221 267999999999984
No 279
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.47 E-value=2.4e-12 Score=93.06 Aligned_cols=123 Identities=19% Similarity=0.189 Sum_probs=72.7
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCC-CccccceeEeEEEEEEECCeEEEEEEEeCCCccccccc-------
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------- 80 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------- 80 (166)
+.+....++|+++|.+|+||||++|++++..... ......+..........++ ..+.++||||.......
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ 109 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNI 109 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHH
Confidence 4556778999999999999999999999865421 1112222222222333454 57899999995532111
Q ss_pred ccccc--ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCC
Q 031083 81 TTAYY--RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD--NVNKILVGNKADMD 133 (166)
Q Consensus 81 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~~K~Dl~ 133 (166)
...++ ...|+++||..++.....+.-...++.+...++. -.+.+++.|+.|..
T Consensus 110 ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 110 IKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 11111 2589999997655321111212334444333221 24689999999974
No 280
>PRK09866 hypothetical protein; Provisional
Probab=99.46 E-value=3.7e-12 Score=99.27 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=62.7
Q ss_pred EEEEEEeCCCccc-----cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcc
Q 031083 64 IKLQIWDTAGQER-----FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (166)
Q Consensus 64 ~~~~i~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~ 138 (166)
.+++|.||||-.. ........+..+|+|+||+|.....+... ....+.+.+. ..+.|+++|+||+|+.... .
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dre-e 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRN-S 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcc-c
Confidence 3578899999532 12223446889999999999987433322 2233334332 2236999999999984222 2
Q ss_pred cchHHHHHHHHHh----C---CeEEEEecccCCCC
Q 031083 139 VPTAKGQELADEY----G---IKFFETVSMFNNEW 166 (166)
Q Consensus 139 ~~~~~~~~~~~~~----~---~~~~~~Sa~~~~~v 166 (166)
...++++++.+.. + ..+|.+||+.|.|+
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~ni 341 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLA 341 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCH
Confidence 2244555553322 2 36999999999874
No 281
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.45 E-value=5.1e-12 Score=93.48 Aligned_cols=83 Identities=19% Similarity=0.180 Sum_probs=60.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeE---------------EEEEEEeCCCcccc---
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERF--- 77 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~--- 77 (166)
++|.++|.|++|||||+|++++........|.++++.....+.+.+.+ .++.+.|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999987655555666666666666665532 25889999994321
Q ss_pred -cc---ccccccccccEEEEEEECC
Q 031083 78 -RT---ITTAYYRGAMGILLVYDVT 98 (166)
Q Consensus 78 -~~---~~~~~~~~~d~~i~v~d~~ 98 (166)
.. .....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 1223457899999999985
No 282
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=4.5e-13 Score=100.50 Aligned_cols=152 Identities=21% Similarity=0.187 Sum_probs=95.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCccc-ccc--------cc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRT--------IT 81 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~--------~~ 81 (166)
-+..++|+++|+|++|||||+|.|.+.... ....+.++.+..-..++++| +.+.+.||.|-.+ -.. .-
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHH
Confidence 345589999999999999999999986653 33445566677778888988 5566679999433 111 11
Q ss_pred ccccccccEEEEEEEC--CChhhHHHHHHHHHHHHHhc------CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHh--
Q 031083 82 TAYYRGAMGILLVYDV--TDESSFNNIRNWMRNIDQHA------ADNVNKILVGNKADMDESKRAVPTAKGQELADEY-- 151 (166)
Q Consensus 82 ~~~~~~~d~~i~v~d~--~~~~s~~~~~~~~~~~~~~~------~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~-- 151 (166)
...+..+|++++|+|+ ++-.+-..+...+.....-. ..+.|++++.||+|+...-.+.............
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~ 422 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRS 422 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCc
Confidence 3445689999999999 33333333344455443211 2357899999999995442332221111111111
Q ss_pred CCe-EEEEecccCCC
Q 031083 152 GIK-FFETVSMFNNE 165 (166)
Q Consensus 152 ~~~-~~~~Sa~~~~~ 165 (166)
..+ ..++|++|+++
T Consensus 423 ~~~i~~~vs~~tkeg 437 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEG 437 (531)
T ss_pred ccceEEEeeechhhh
Confidence 133 44588888875
No 283
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.44 E-value=9.8e-13 Score=107.54 Aligned_cols=120 Identities=20% Similarity=0.196 Sum_probs=81.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCC----------------CCCccccceeEeEEEEEEE--------------
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSF----------------TTSFITTIGIDFKIRTIEL-------------- 59 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~-------------- 59 (166)
+..+...+|+|+|..++|||||+++|+...- ..+.....++......+.+
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 4467788999999999999999999975321 0111111122211222222
Q ss_pred CCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031083 60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (166)
Q Consensus 60 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~ 133 (166)
++..+.+.++|+||+..|.......++.+|++|+|+|+.+.-...... .+.... ..+.|++++.||+|..
T Consensus 94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL---GERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHH---HCCCCEEEEEECCccc
Confidence 223577899999999999887788889999999999999754433322 233332 2378999999999984
No 284
>PRK12740 elongation factor G; Reviewed
Probab=99.44 E-value=2e-12 Score=103.76 Aligned_cols=124 Identities=22% Similarity=0.183 Sum_probs=82.3
Q ss_pred EcCCCCcHHHHHHHHhcCCCC------------------CCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 031083 21 IGDSGVGKSCLLLRFSDDSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 82 (166)
Q Consensus 21 ~G~~~~GKssli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 82 (166)
+|..++|||||+++|....-. .+.....++......+.+++ +.+.+||+||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 589999999999999542110 01122333344445555555 6799999999988777777
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC
Q 031083 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI 153 (166)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (166)
..+..+|++++++|.++........ .+..+.. .+.|+++|+||+|+.... ..+-.+++.+.++.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~---~~~p~iiv~NK~D~~~~~---~~~~~~~l~~~l~~ 142 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTET-VWRQAEK---YGVPRIIFVNKMDRAGAD---FFRVLAQLQEKLGA 142 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH---cCCCEEEEEECCCCCCCC---HHHHHHHHHHHHCC
Confidence 8889999999999999866554332 3333322 367999999999984322 22334455555554
No 285
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.43 E-value=8.4e-13 Score=93.69 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=69.3
Q ss_pred cccccccccccccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC
Q 031083 75 ERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI 153 (166)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (166)
++++.+...+++++|.+++|||+.++. +++.+..|+..+.. .+.|+++|+||+||.+ ...+..++++.+. .++.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~-~~~~~~~~~~~~~-~~g~ 98 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLD-DEDMEKEQLDIYR-NIGY 98 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCC-CHHHHHHHHHHHH-HCCC
Confidence 677888888999999999999999887 89999999876543 4789999999999943 3333334444444 5789
Q ss_pred eEEEEecccCCCC
Q 031083 154 KFFETVSMFNNEW 166 (166)
Q Consensus 154 ~~~~~Sa~~~~~v 166 (166)
+++++||++|+||
T Consensus 99 ~v~~~SAktg~gi 111 (245)
T TIGR00157 99 QVLMTSSKNQDGL 111 (245)
T ss_pred eEEEEecCCchhH
Confidence 9999999999875
No 286
>PTZ00416 elongation factor 2; Provisional
Probab=99.42 E-value=1.5e-12 Score=106.31 Aligned_cols=118 Identities=20% Similarity=0.202 Sum_probs=79.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCC----------------CCccccceeEeEEEEEEEC--------CeEEEEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT----------------TSFITTIGIDFKIRTIELD--------GKRIKLQ 67 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 67 (166)
.+...+|+++|..++|||||+++|+...-. .+.....++......+.++ +..+.+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 466779999999999999999999862210 0111111111112223332 2256789
Q ss_pred EEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031083 68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (166)
Q Consensus 68 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~ 133 (166)
++||||+..|.......++.+|++|+|+|+.+.-.... ...+..+.. .+.|++++.||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence 99999998887777778899999999999987433222 233343332 367999999999984
No 287
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.41 E-value=1.4e-12 Score=105.29 Aligned_cols=121 Identities=20% Similarity=0.179 Sum_probs=79.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCC--C--------------CccccceeEeEEE--EEEECCeEEEEEEEeCC
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT--T--------------SFITTIGIDFKIR--TIELDGKRIKLQIWDTA 72 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~--------------~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~ 72 (166)
..+...+|+++|..++|||||+.+|+...-. . +.....++..... .+.+++..+.+.++|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 95 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP 95 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence 3466789999999999999999999752211 0 0000111111112 22335556789999999
Q ss_pred CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031083 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135 (166)
Q Consensus 73 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~ 135 (166)
|+..|.......++.+|++++|+|+...-... ....+..... .+.|.+++.||+|+...
T Consensus 96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~---~~~~~iv~iNK~D~~~~ 154 (731)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR---ERVKPVLFINKVDRLIK 154 (731)
T ss_pred CccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH---cCCCeEEEEECchhhcc
Confidence 99988777778889999999999988743322 2223333222 14578999999998533
No 288
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.40 E-value=4.3e-12 Score=91.59 Aligned_cols=139 Identities=22% Similarity=0.296 Sum_probs=75.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCc----------cccceeEeEEEEEEECCeEEEEEEEeCCCccc-------
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSF----------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER------- 76 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------- 76 (166)
..++|+|+|.+|+|||||||.|++....... ..+..+......+.-++..+.+.++||||...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4689999999999999999999986553332 12223333444555677889999999999110
Q ss_pred -----------ccc-------cccccc--ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-
Q 031083 77 -----------FRT-------ITTAYY--RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES- 135 (166)
Q Consensus 77 -----------~~~-------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~- 135 (166)
|.. ...... ..+|+++++++.+...--..-...++.+. ..+++|-|..|+|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence 100 000111 24788999888765221111123444443 37889999999997321
Q ss_pred CcccchHHHHHHHHHhCCeEE
Q 031083 136 KRAVPTAKGQELADEYGIKFF 156 (166)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~ 156 (166)
+.....+.+.+-.+.+++.+|
T Consensus 159 el~~~k~~i~~~l~~~~I~~f 179 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIF 179 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S-
T ss_pred HHHHHHHHHHHHHHHcCceee
Confidence 111123333444445555444
No 289
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.7e-11 Score=92.69 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=101.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcC--------------------CC---------CCCccccceeEeEEEEEEEC
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDD--------------------SF---------TTSFITTIGIDFKIRTIELD 60 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~--------------------~~---------~~~~~~~~~~~~~~~~~~~~ 60 (166)
..+...++++++|...+|||||+.++... +. ........++........++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 33557899999999999999999998641 10 00111112333344444555
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChh---hHHH---HHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031083 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNN---IRNWMRNIDQHAADNVNKILVGNKADMDE 134 (166)
Q Consensus 61 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~---~~~~~~~~~~~~~~~~piivv~~K~Dl~~ 134 (166)
.....+++.|+||+..|-........++|+.++|+|++... .|+. .++. ..+.+..+ -..++|+.||+|+.+
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~Lg-i~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRSLG-ISQLIVAINKMDLVS 329 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHHcC-cceEEEEeecccccC
Confidence 56678999999999888888888888999999999998621 2221 1222 22222222 346899999999832
Q ss_pred CCcc----cchHHHHHHH-HHhC-----CeEEEEecccCCCC
Q 031083 135 SKRA----VPTAKGQELA-DEYG-----IKFFETVSMFNNEW 166 (166)
Q Consensus 135 ~~~~----~~~~~~~~~~-~~~~-----~~~~~~Sa~~~~~v 166 (166)
..+ .....+..|. +.+| +.|+.||+.+|+|+
T Consensus 330 -Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 330 -WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENL 370 (603)
T ss_pred -ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcc
Confidence 222 2333445566 5555 48999999999985
No 290
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.34 E-value=1.9e-11 Score=91.50 Aligned_cols=141 Identities=18% Similarity=0.234 Sum_probs=99.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCC--CCCC------------ccccceeEeEEE--EEEECCeEEEEEEEeCCCcccc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDS--FTTS------------FITTIGIDFKIR--TIELDGKRIKLQIWDTAGQERF 77 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~------------~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~~~~ 77 (166)
...+|+++.....|||||+..|+... |... -....++.+-.+ -+.+++ +.+.+.|||||..|
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~--~~INIvDTPGHADF 81 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG--TRINIVDTPGHADF 81 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC--eEEEEecCCCcCCc
Confidence 45689999999999999999998632 2110 011112233333 345555 78899999999999
Q ss_pred ccccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHH----
Q 031083 78 RTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE---- 150 (166)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~---- 150 (166)
-......+.=+|++++++|+.+ |++-.-+ .+....+.+-|+|.||+|.+......-.++...+...
T Consensus 82 GGEVERvl~MVDgvlLlVDA~EGpMPQTrFVl-------kKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~ 154 (603)
T COG1217 82 GGEVERVLSMVDGVLLLVDASEGPMPQTRFVL-------KKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGAT 154 (603)
T ss_pred cchhhhhhhhcceEEEEEEcccCCCCchhhhH-------HHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 9988888999999999999998 3332222 2222346778899999999776665555666665544
Q ss_pred ---hCCeEEEEecccC
Q 031083 151 ---YGIKFFETVSMFN 163 (166)
Q Consensus 151 ---~~~~~~~~Sa~~~ 163 (166)
+++|++..|+..|
T Consensus 155 deQLdFPivYAS~~~G 170 (603)
T COG1217 155 DEQLDFPIVYASARNG 170 (603)
T ss_pred hhhCCCcEEEeeccCc
Confidence 4579999999876
No 291
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.34 E-value=3.8e-11 Score=84.29 Aligned_cols=141 Identities=13% Similarity=0.166 Sum_probs=81.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
......|+++|.+++|||||++.+.+...........+. + ..+.. ...++.++|+||.- .. .....+.+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i~~~--~~~~i~~vDtPg~~--~~-~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TVVTG--KKRRLTFIECPNDI--NA-MIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EEEec--CCceEEEEeCCchH--HH-HHHHHHhcCEE
Confidence 345578999999999999999999874221111111110 1 11122 34568889999853 22 12335789999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCcc--cchHHHHH-HHHHh--CCeEEEEecccCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKRA--VPTAKGQE-LADEY--GIKFFETVSMFNN 164 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~~K~Dl~~~~~~--~~~~~~~~-~~~~~--~~~~~~~Sa~~~~ 164 (166)
++++|++....... ..++..+.. .+.| +++|.||.|+...... ....++++ +..++ +.+++.+||++.-
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 99999986433222 223333332 2456 4559999998532211 11122222 33222 3689999988763
No 292
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=4.2e-11 Score=87.82 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=64.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCe----------------EEEEEEEeCCCcc---
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGK----------------RIKLQIWDTAGQE--- 75 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~D~~g~~--- 75 (166)
.+++.++|-|++|||||.|.++.........|+++++.....+.+.++ ...+.|+|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999998877778888888888776665322 1357889999832
Q ss_pred ----ccccccccccccccEEEEEEECC
Q 031083 76 ----RFRTITTAYYRGAMGILLVYDVT 98 (166)
Q Consensus 76 ----~~~~~~~~~~~~~d~~i~v~d~~ 98 (166)
..-..+-.-++++|+++.|++++
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 12223344567899999999987
No 293
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.32 E-value=1.2e-11 Score=86.12 Aligned_cols=142 Identities=21% Similarity=0.214 Sum_probs=77.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCcc--ccceeEeEEEEEEECCeEEEEEEEeCCCccccc----c----c---cc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFI--TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----T----I---TT 82 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~----~---~~ 82 (166)
++|+++|.+|+||||++|.+++........ ...+.........+++ ..+.++||||--... . + ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999876543321 1112233344446777 457888999932111 0 1 11
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCcc---cc---hHHHHHHHHHhCCe
Q 031083 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD--NVNKILVGNKADMDESKRA---VP---TAKGQELADEYGIK 154 (166)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~~K~Dl~~~~~~---~~---~~~~~~~~~~~~~~ 154 (166)
......|+++||+.+... +- .....+..+...++. -..++||.|..|-...... +. ....+++.+.++-.
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~-~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TE-EDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SH-HHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcc-hH-HHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 234568999999998832 21 222223333332221 1247888888876333321 11 12355677777777
Q ss_pred EEEEecc
Q 031083 155 FFETVSM 161 (166)
Q Consensus 155 ~~~~Sa~ 161 (166)
|+..+.+
T Consensus 157 ~~~f~n~ 163 (212)
T PF04548_consen 157 YHVFNNK 163 (212)
T ss_dssp EEECCTT
T ss_pred EEEEecc
Confidence 7765554
No 294
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=4.7e-11 Score=86.57 Aligned_cols=145 Identities=19% Similarity=0.247 Sum_probs=87.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCC----C---CCCccccceeEeEEEEEEE-------CCeEEEEEEEeCCCccccccc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDS----F---TTSFITTIGIDFKIRTIEL-------DGKRIKLQIWDTAGQERFRTI 80 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~g~~~~~~~ 80 (166)
.+++.++|...+|||+|.+++..-. | +.......+.+.....+.+ ++..+++++.|+||+...-..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 4999999999999999999997521 1 2222222233332222222 555678999999998755443
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC-CCCCcccchH-HHHHHHHHh-------
Q 031083 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM-DESKRAVPTA-KGQELADEY------- 151 (166)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl-~~~~~~~~~~-~~~~~~~~~------- 151 (166)
......-.|..++|+|+...-.-+.+..++ +.+...+ ..++|.||+|. +++++....+ .++++.+-+
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~c~--klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g 162 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELLCK--KLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDG 162 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhhh--hhhhhcc--ceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCC
Confidence 333344578899999988744433443322 2222222 46777788876 4444433222 233333322
Q ss_pred CCeEEEEecccC
Q 031083 152 GIKFFETVSMFN 163 (166)
Q Consensus 152 ~~~~~~~Sa~~~ 163 (166)
+.|++++||+.|
T Consensus 163 ~~PI~~vsa~~G 174 (522)
T KOG0461|consen 163 NSPIVEVSAADG 174 (522)
T ss_pred CCceeEEecCCC
Confidence 269999999988
No 295
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.31 E-value=2.7e-11 Score=81.23 Aligned_cols=62 Identities=26% Similarity=0.340 Sum_probs=42.9
Q ss_pred EEEEeCCCcc----ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 031083 66 LQIWDTAGQE----RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130 (166)
Q Consensus 66 ~~i~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~ 130 (166)
+.|+|+||.. ....+...++..+|++++|.+++...+-.....+.+..... +..+++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 7889999943 23356677889999999999999865544444444444332 33489999984
No 296
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=2.3e-12 Score=88.39 Aligned_cols=145 Identities=21% Similarity=0.319 Sum_probs=93.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCccccc-----ccccccccc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-----TITTAYYRG 87 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----~~~~~~~~~ 87 (166)
..-||+++|.+|+||||+-..++.+... ....++.++++....+.+-| ...+.+||.+|++.+- ......+++
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 3568999999999999998887754321 11223334556655554433 2578999999988432 244667889
Q ss_pred ccEEEEEEECCChhhHHHHH---HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-cccchH----HHHHHHHHhCCeEEEEe
Q 031083 88 AMGILLVYDVTDESSFNNIR---NWMRNIDQHAADNVNKILVGNKADMDESK-RAVPTA----KGQELADEYGIKFFETV 159 (166)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~piivv~~K~Dl~~~~-~~~~~~----~~~~~~~~~~~~~~~~S 159 (166)
+++++++||++..+--..+. +-+..+.++.+ ...+.+..+|+|+.... ++...+ ....+.+.+++.++.+|
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999999865443443 33445555554 67899999999995432 222222 23334444456677766
Q ss_pred c
Q 031083 160 S 160 (166)
Q Consensus 160 a 160 (166)
-
T Consensus 161 i 161 (295)
T KOG3886|consen 161 I 161 (295)
T ss_pred h
Confidence 4
No 297
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=5.2e-11 Score=94.84 Aligned_cols=132 Identities=18% Similarity=0.168 Sum_probs=92.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCC--CC----------------CCccccceeEeEEEEEEECCeEEEEEEEeCCC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS--FT----------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 73 (166)
.+...+|.++|.-.+|||||..+++... .. .+....+++......+.+.+ .+.+.++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 5778899999999999999999987421 11 11112222222333444443 47889999999
Q ss_pred ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHH
Q 031083 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELA 148 (166)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~ 148 (166)
|-.|......-++-+|+.++|+|+...-......-|.+... .++|.+++.||+|....+.....+++....
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l 156 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERL 156 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHh
Confidence 99999999999999999999999997444433344444443 378999999999986666655555444433
No 298
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.26 E-value=8e-12 Score=95.00 Aligned_cols=147 Identities=20% Similarity=0.371 Sum_probs=113.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
-.++|+.|+|..++|||+|+++++.+.|.+...+..+ .+.+++.+++..+.+.+.|.+|.. -..|-..+|++|
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavI 100 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVV 100 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccceE
Confidence 3468999999999999999999999998877666544 566778888888888889998843 234566799999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCC-CCCcccchHHHHHHHHHh-CCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMD-ESKRAVPTAKGQELADEY-GIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~-~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v 166 (166)
|+|...+..+|+.+..+...+..+. ...+|+++++++.-.. ...+.+...++.+++.++ .+.+|++++.+|.||
T Consensus 101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv 177 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNV 177 (749)
T ss_pred EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhH
Confidence 9999999999999998888875433 3478899999887652 223334445555555444 589999999999875
No 299
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.26 E-value=5.2e-11 Score=87.33 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=59.8
Q ss_pred eEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhH----------HHHHHHHHHHHH-hcCCC
Q 031083 52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF----------NNIRNWMRNIDQ-HAADN 120 (166)
Q Consensus 52 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~----------~~~~~~~~~~~~-~~~~~ 120 (166)
+....+.+.+ ..+.+.|.+||..-+..|..++.+++++|||+++++.+.. .+...+++.+.. ....+
T Consensus 185 I~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~ 262 (354)
T KOG0082|consen 185 IVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFAN 262 (354)
T ss_pred eeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccccc
Confidence 3344555555 6788899999988888999999999999999999974442 222345555544 33458
Q ss_pred CcEEEEEeCCCCC
Q 031083 121 VNKILVGNKADMD 133 (166)
Q Consensus 121 ~piivv~~K~Dl~ 133 (166)
+++|+++||.||.
T Consensus 263 tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 263 TSIILFLNKKDLF 275 (354)
T ss_pred CcEEEEeecHHHH
Confidence 9999999999984
No 300
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.26 E-value=1e-10 Score=80.63 Aligned_cols=90 Identities=17% Similarity=0.080 Sum_probs=52.7
Q ss_pred EEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHH
Q 031083 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKG 144 (166)
Q Consensus 65 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~ 144 (166)
..++.++.|..-...... . -+|.+|.|+|+.+.++... .+..++ ...-++++||+|+.+. .....+.+
T Consensus 93 D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~-~~~~~~~~ 160 (199)
T TIGR00101 93 EMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPM-VGADLGVM 160 (199)
T ss_pred CEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhcccc-ccccHHHH
Confidence 355667777432222211 1 2678999999997665321 111111 1223889999999531 12233444
Q ss_pred HHHHHHh--CCeEEEEecccCCCC
Q 031083 145 QELADEY--GIKFFETVSMFNNEW 166 (166)
Q Consensus 145 ~~~~~~~--~~~~~~~Sa~~~~~v 166 (166)
.+..+.+ +.+++++||++|+|+
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi 184 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGL 184 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCH
Confidence 5555553 479999999999985
No 301
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.25 E-value=1.3e-11 Score=76.83 Aligned_cols=127 Identities=23% Similarity=0.231 Sum_probs=84.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCc----cccccccccccccccEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----ERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~d~~i 92 (166)
|+.++|..|+|||||.+.+-+...... .|.. +.++++ -.+|+||- .++=........++|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQA-------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQA-------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc--ccce-------eeccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 789999999999999999998664332 1111 122221 13499982 211111233456899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-eEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 166 (166)
++-++++++|... .-+.... ..|+|-|.||.||++ ....+..++|..+.|. ++|++|+..+.+|
T Consensus 70 ~v~~and~~s~f~-----p~f~~~~--~k~vIgvVTK~DLae---d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv 134 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDIG--VKKVIGVVTKADLAE---DADISLVKRWLREAGAEPIFETSAVDNQGV 134 (148)
T ss_pred eeecccCccccCC-----ccccccc--ccceEEEEecccccc---hHhHHHHHHHHHHcCCcceEEEeccCcccH
Confidence 9999999876321 1112111 446999999999954 2334556888888886 8999999988764
No 302
>PRK13768 GTPase; Provisional
Probab=99.24 E-value=3.6e-11 Score=85.82 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=42.5
Q ss_pred EEEEEeCCCcccc---cccccccccc-----ccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031083 65 KLQIWDTAGQERF---RTITTAYYRG-----AMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDE 134 (166)
Q Consensus 65 ~~~i~D~~g~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~~K~Dl~~ 134 (166)
.+.+||+||+.+. +..+..+++. .+++++++|++...+.... ..++..+......+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 5889999997653 3333223322 7899999999764332222 1222222111123789999999999844
No 303
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.24 E-value=5.6e-12 Score=93.39 Aligned_cols=113 Identities=14% Similarity=0.159 Sum_probs=55.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccc--eeEeEEEEEEECCeEEEEEEEeCCCcc--ccc---cccccc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTI--GIDFKIRTIELDGKRIKLQIWDTAGQE--RFR---TITTAY 84 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~--~~~---~~~~~~ 84 (166)
...++|+|+|.+|+|||||||.|.+-... +..-++- +.......+..... -.+++||+||.. .+. .+....
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 45689999999999999999999762221 1111110 00111111222211 248999999932 221 122334
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031083 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132 (166)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl 132 (166)
+...|.+|++.+-.=.+ .-..+...+.+ .+.|+++|-||+|.
T Consensus 112 ~~~yD~fiii~s~rf~~---ndv~La~~i~~---~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 112 FYRYDFFIIISSERFTE---NDVQLAKEIQR---MGKKFYFVRTKVDS 153 (376)
T ss_dssp GGG-SEEEEEESSS--H---HHHHHHHHHHH---TT-EEEEEE--HHH
T ss_pred ccccCEEEEEeCCCCch---hhHHHHHHHHH---cCCcEEEEEecccc
Confidence 56789877766633221 11223344433 26689999999995
No 304
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.21 E-value=6.6e-11 Score=82.14 Aligned_cols=147 Identities=20% Similarity=0.179 Sum_probs=77.6
Q ss_pred ccCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCC------------CCccccc--eeEeEEEEEEECCe----------
Q 031083 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT------------TSFITTI--GIDFKIRTIELDGK---------- 62 (166)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~------------~~~~~~~--~~~~~~~~~~~~~~---------- 62 (166)
+..-.......|.++|+.|+|||||++++...... ...+... ......... .+++
T Consensus 14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l-~~gcic~~~~~~~~ 92 (207)
T TIGR00073 14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQI-NTGKECHLDAHMVA 92 (207)
T ss_pred HHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEE-cCCCcccCChHHHH
Confidence 33444556889999999999999999998753100 0000000 000000000 0111
Q ss_pred ---------EEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031083 63 ---------RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (166)
Q Consensus 63 ---------~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~ 133 (166)
...+.+.|+.|.-... ..+....+..+.++|..+.+.. ....... ...|.++++||.|+.
T Consensus 93 ~~l~~~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~~~~------~~~a~iiv~NK~Dl~ 161 (207)
T TIGR00073 93 HALEDLPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKYPGM------FKEADLIVINKADLA 161 (207)
T ss_pred HHHHHhccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhhHhH------HhhCCEEEEEHHHcc
Confidence 1245667777721101 1111224445667777754431 1111111 145789999999994
Q ss_pred CCCcccchHHHHHHHHHhC--CeEEEEecccCCCC
Q 031083 134 ESKRAVPTAKGQELADEYG--IKFFETVSMFNNEW 166 (166)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v 166 (166)
+. ......+..+..++.+ .+++++||++|+||
T Consensus 162 ~~-~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv 195 (207)
T TIGR00073 162 EA-VGFDVEKMKADAKKINPEAEIILMSLKTGEGL 195 (207)
T ss_pred cc-chhhHHHHHHHHHHhCCCCCEEEEECCCCCCH
Confidence 32 2222334444445444 79999999999985
No 305
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.19 E-value=8.7e-10 Score=82.37 Aligned_cols=146 Identities=17% Similarity=0.192 Sum_probs=87.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcC----CCC------------CCcccc-----ceeEe---EEEEEEE-CCeEE
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDD----SFT------------TSFITT-----IGIDF---KIRTIEL-DGKRI 64 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~----~~~------------~~~~~~-----~~~~~---~~~~~~~-~~~~~ 64 (166)
.....++.|.|+|+.++|||||||+|.+. ... +...+. +..-+ ...++.. ++-..
T Consensus 12 ~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~ 91 (492)
T TIGR02836 12 ERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKF 91 (492)
T ss_pred HHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcc
Confidence 34567899999999999999999999886 221 111111 11111 1122222 44456
Q ss_pred EEEEEeCCCccc--------ccc---------------------ccccccc-cccEEEEEE-ECC--C--hhhH-HHHHH
Q 031083 65 KLQIWDTAGQER--------FRT---------------------ITTAYYR-GAMGILLVY-DVT--D--ESSF-NNIRN 108 (166)
Q Consensus 65 ~~~i~D~~g~~~--------~~~---------------------~~~~~~~-~~d~~i~v~-d~~--~--~~s~-~~~~~ 108 (166)
.+.+.|++|-.. ... -....+. ++++.++|. |.+ + ++.+ +.-..
T Consensus 92 ~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~ 171 (492)
T TIGR02836 92 KVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEER 171 (492)
T ss_pred cEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHH
Confidence 788899998221 111 0122334 788888887 664 1 2233 33345
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecc
Q 031083 109 WMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSM 161 (166)
Q Consensus 109 ~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (166)
++.++.+. +.|+++|.||.|-... ...+.++++...++.+++.+|+.
T Consensus 172 ~i~eLk~~---~kPfiivlN~~dp~~~---et~~l~~~l~eky~vpvl~v~c~ 218 (492)
T TIGR02836 172 VIEELKEL---NKPFIILLNSTHPYHP---ETEALRQELEEKYDVPVLAMDVE 218 (492)
T ss_pred HHHHHHhc---CCCEEEEEECcCCCCc---hhHHHHHHHHHHhCCceEEEEHH
Confidence 66666543 7799999999993111 13334456777888888777764
No 306
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.9e-10 Score=89.53 Aligned_cols=118 Identities=25% Similarity=0.293 Sum_probs=85.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccc-----------------cceeEeEEEEE---EECCeEEEEEEEe
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFIT-----------------TIGIDFKIRTI---ELDGKRIKLQIWD 70 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~i~D 70 (166)
.+....+|.++|.-++|||+|+..|.....+.-+.. ..++......+ ..+++.+-+.+.|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 457789999999999999999999987544221111 11111111111 1266677899999
Q ss_pred CCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031083 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132 (166)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl 132 (166)
+|||.+|......-++.+|++++++|+.+.-.+..-+-+...+ ..+.|+++|.||+|.
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai----q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI----QNRLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH----hccCcEEEEEehhHH
Confidence 9999999998888999999999999999866654433333333 347899999999996
No 307
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.18 E-value=3.7e-10 Score=82.52 Aligned_cols=140 Identities=22% Similarity=0.310 Sum_probs=84.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCC----------ccccceeEeEEEEEEECCeEEEEEEEeCCCcc------
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQE------ 75 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~------ 75 (166)
....++|+++|+.|+|||||+|.|++...... ..++..+..+...+.-++-.+++++.||||.-
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs 99 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS 99 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence 46789999999999999999999998633221 23455555566666668888899999999911
Q ss_pred ------------cccc--------cccccccc--ccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031083 76 ------------RFRT--------ITTAYYRG--AMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM 132 (166)
Q Consensus 76 ------------~~~~--------~~~~~~~~--~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~~K~Dl 132 (166)
+++. .+...+.+ +|++++.+.-+. ..+..+ ...++.+. ..+.+|-|..|+|.
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~ 174 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLS----KRVNLIPVIAKADT 174 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHh----cccCeeeeeecccc
Confidence 1111 11112333 566666665443 222222 23334443 36779999999998
Q ss_pred CCCC-cccchHHHHHHHHHhCCeEE
Q 031083 133 DESK-RAVPTAKGQELADEYGIKFF 156 (166)
Q Consensus 133 ~~~~-~~~~~~~~~~~~~~~~~~~~ 156 (166)
...+ .....+.+.+....+++++|
T Consensus 175 lT~~El~~~K~~I~~~i~~~nI~vf 199 (373)
T COG5019 175 LTDDELAEFKERIREDLEQYNIPVF 199 (373)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcee
Confidence 3321 12223334455555566665
No 308
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.17 E-value=7.2e-10 Score=87.01 Aligned_cols=123 Identities=20% Similarity=0.220 Sum_probs=73.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccc-------cc-
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TI- 80 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~- 80 (166)
.+-...++|+++|.+|+||||++|.+++... ........+..........++ ..+.++||||..... .+
T Consensus 113 ~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeIL 190 (763)
T TIGR00993 113 DPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKIL 190 (763)
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHH
Confidence 3446678999999999999999999998753 322211112222222233454 468889999944321 11
Q ss_pred --cccccc--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCC
Q 031083 81 --TTAYYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD--NVNKILVGNKADMDE 134 (166)
Q Consensus 81 --~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~~K~Dl~~ 134 (166)
...++. ..|++++|..++.......-..+++.+...++. -.-+|||.|..|..+
T Consensus 191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 111333 479999999876433322233455555444432 134789999999743
No 309
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.17 E-value=1.1e-10 Score=80.73 Aligned_cols=143 Identities=20% Similarity=0.297 Sum_probs=82.7
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCC---------CCccccceeEeEEEEEEECCeEEEEEEEeCCCcc-----
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT---------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----- 75 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----- 75 (166)
.+.-..++|.|+|.+|.|||||+|+++..... .....|.++......+.-++-+.++++.||||.-
T Consensus 41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN 120 (336)
T KOG1547|consen 41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN 120 (336)
T ss_pred HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence 34567899999999999999999999864321 1233444444555556667778899999999911
Q ss_pred -------------cc--------cccccccccc--ccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCC
Q 031083 76 -------------RF--------RTITTAYYRG--AMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKAD 131 (166)
Q Consensus 76 -------------~~--------~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~~K~D 131 (166)
+| ...+...+.+ +|++++.+..+.. ++..+ ..+++.+.+ -+.++-|.-|+|
T Consensus 121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~----vvNvvPVIakaD 195 (336)
T KOG1547|consen 121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE----VVNVVPVIAKAD 195 (336)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh----hheeeeeEeecc
Confidence 11 1123344444 4555555554432 22222 133344433 456888899999
Q ss_pred CCC-CCcccchHHHHHHHHHhCCeEEE
Q 031083 132 MDE-SKRAVPTAKGQELADEYGIKFFE 157 (166)
Q Consensus 132 l~~-~~~~~~~~~~~~~~~~~~~~~~~ 157 (166)
-.. +++..-.+.+++-...+++.+|.
T Consensus 196 tlTleEr~~FkqrI~~el~~~~i~vYP 222 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIRKELEKHGIDVYP 222 (336)
T ss_pred cccHHHHHHHHHHHHHHHHhcCccccc
Confidence 522 22222233344444455665554
No 310
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.15 E-value=2.7e-10 Score=80.28 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=24.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...++++-|+++|..|||||||+++|..
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHH
Confidence 3456778999999999999999999975
No 311
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.15 E-value=9.3e-11 Score=84.17 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=59.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeE---------------EEEEEEeCCCcccc----c
Q 031083 18 LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERF----R 78 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~----~ 78 (166)
|.++|.|++|||||+|++++........+.++++.....+.+.+.+ .++.++|+||...- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999988766666777777777777776542 25889999994321 1
Q ss_pred cc---cccccccccEEEEEEECC
Q 031083 79 TI---TTAYYRGAMGILLVYDVT 98 (166)
Q Consensus 79 ~~---~~~~~~~~d~~i~v~d~~ 98 (166)
.+ .-..++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 11 222356799999999975
No 312
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=6e-10 Score=83.06 Aligned_cols=141 Identities=15% Similarity=0.154 Sum_probs=93.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhc--CC--------------CC------CCccccceeEeEEEEEEECCeEEEEEE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSD--DS--------------FT------TSFITTIGIDFKIRTIELDGKRIKLQI 68 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~--~~--------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i 68 (166)
+..++..++|+-.|.+|||||-..|+- +. +. -+....+.+......+.+++ ..+.+
T Consensus 8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~--~~iNL 85 (528)
T COG4108 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD--CLVNL 85 (528)
T ss_pred HHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC--eEEec
Confidence 345667899999999999999999753 11 00 01122223333344445554 66888
Q ss_pred EeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHH
Q 031083 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELA 148 (166)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~ 148 (166)
.|||||+.|+.-...-+..+|..++|+|+...---.. .+ +-++.+ ..++||+-+.||.|- +...+.+-..++.
T Consensus 86 LDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~K-LfeVcr--lR~iPI~TFiNKlDR---~~rdP~ELLdEiE 158 (528)
T COG4108 86 LDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LK-LFEVCR--LRDIPIFTFINKLDR---EGRDPLELLDEIE 158 (528)
T ss_pred cCCCCccccchhHHHHHHhhheeeEEEecccCccHHH-HH-HHHHHh--hcCCceEEEeecccc---ccCChHHHHHHHH
Confidence 8999999999888888899999999999886211111 11 122222 348999999999996 2334456667777
Q ss_pred HHhCCeEEEEec
Q 031083 149 DEYGIKFFETVS 160 (166)
Q Consensus 149 ~~~~~~~~~~Sa 160 (166)
+.+++.++.+..
T Consensus 159 ~~L~i~~~PitW 170 (528)
T COG4108 159 EELGIQCAPITW 170 (528)
T ss_pred HHhCcceecccc
Confidence 777777666543
No 313
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=6.1e-10 Score=87.63 Aligned_cols=115 Identities=19% Similarity=0.130 Sum_probs=78.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEE------------CCe----EEEEEEEeCCCcc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL------------DGK----RIKLQIWDTAGQE 75 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~~----~~~~~i~D~~g~~ 75 (166)
.-+..=|+|+|...+|||-|+..+.+..........++..+....+.. +++ .--+.++|+||++
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 344556899999999999999999875543332222221111111111 111 0126778999999
Q ss_pred ccccccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031083 76 RFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (166)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~ 133 (166)
.|..++......||..|+|+|+.. +.+.+.+. -.+..++|+||.+||+|..
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~-------lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN-------LLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhHHHH-------HHHhcCCCeEEeehhhhhh
Confidence 999999999999999999999886 44444432 2233488999999999963
No 314
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2.1e-10 Score=82.41 Aligned_cols=152 Identities=15% Similarity=0.136 Sum_probs=93.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC---CCCCCccccceeEeEEE------------------EEEEC------CeEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDD---SFTTSFITTIGIDFKIR------------------TIELD------GKRIK 65 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~---~~~~~~~~~~~~~~~~~------------------~~~~~------~~~~~ 65 (166)
+..++|.++|....|||||.+.|.+- .+.++-....++..-+. .-... .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 67899999999999999999999872 11111111111111000 00001 11235
Q ss_pred EEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc-ccchHHH
Q 031083 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAKG 144 (166)
Q Consensus 66 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~-~~~~~~~ 144 (166)
+.|.|.|||+-.....-..-.-.|+.++|++++.+..--..++-+..+.-.. -..++++-||+|+...++ ..+.+|+
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 7889999998665544444556899999999997433222222222222111 235999999999944332 2356677
Q ss_pred HHHHHHh---CCeEEEEecccCCCC
Q 031083 145 QELADEY---GIKFFETVSMFNNEW 166 (166)
Q Consensus 145 ~~~~~~~---~~~~~~~Sa~~~~~v 166 (166)
++|.+-- +.+++.+||..+.|+
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NI 190 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANI 190 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCH
Confidence 7777643 579999999988764
No 315
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.09 E-value=8.9e-12 Score=87.97 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=36.1
Q ss_pred EEEEEeCCCcccccccccccc--------ccccEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031083 65 KLQIWDTAGQERFRTITTAYY--------RGAMGILLVYDVTDESS-FNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (166)
Q Consensus 65 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~ 134 (166)
.+.++|+|||.++-..+.... ...-++++++|+.-..+ ...+..++..+.-....+.|.+.|.||+|+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCccc
Confidence 478899999876533222211 33457889999764332 22333444444333334899999999999954
No 316
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.1e-09 Score=80.44 Aligned_cols=118 Identities=23% Similarity=0.359 Sum_probs=74.4
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCC---------CccccceeEeEEEEEEECCeEEEEEEEeCCCccc----
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---- 76 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---- 76 (166)
......+.++++|++|.|||||||.|+...+.. ....+..+..+...+.-+|-.++|++.||||.-.
T Consensus 16 ~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdn 95 (366)
T KOG2655|consen 16 VKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDN 95 (366)
T ss_pred HhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccc
Confidence 345667999999999999999999999864432 2223445555555666678889999999999111
Q ss_pred --------------c-------ccccccccc--cccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031083 77 --------------F-------RTITTAYYR--GAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM 132 (166)
Q Consensus 77 --------------~-------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~~K~Dl 132 (166)
| ..+....+. .+|++++.+.-+.. .+..+ ....+.+ ...+.+|-|..|+|.
T Consensus 96 s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l----~~~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 96 SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKL----SKKVNLIPVIAKADT 170 (366)
T ss_pred cccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHH----hccccccceeecccc
Confidence 1 111122333 36666666664432 12222 1233333 347789999999997
No 317
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.08 E-value=5.5e-11 Score=85.44 Aligned_cols=123 Identities=19% Similarity=0.166 Sum_probs=84.1
Q ss_pred cCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc---------ccc
Q 031083 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFR 78 (166)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~ 78 (166)
.+...+...-|.++|..++||||||+.|+.....+...-+.+.+.+.+....+... .+.+.||-|.- .|+
T Consensus 171 ~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ 249 (410)
T KOG0410|consen 171 VGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQ 249 (410)
T ss_pred hccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHH
Confidence 34455666789999999999999999999877766666666667766666665444 56677999832 122
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCC----CCcEEEEEeCCCC
Q 031083 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD----NVNKILVGNKADM 132 (166)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piivv~~K~Dl 132 (166)
. .-.....+|.++.|.|++.|+.-+.....+.-+.+..-+ ...++=|-||+|.
T Consensus 250 A-TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~ 306 (410)
T KOG0410|consen 250 A-TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDY 306 (410)
T ss_pred H-HHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccc
Confidence 2 122346799999999999988765555555555443222 2235667888887
No 318
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.08 E-value=1.1e-09 Score=82.90 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=53.9
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChh----------hHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCC
Q 031083 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES----------SFNNIRNWMRNIDQ-HAADNVNKILVGNKADM 132 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl 132 (166)
..+.++|.+|+...+..|..++.++++||||+++++-+ .+.+...++..+.. ....+.|++|++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 56889999999988999999999999999999987532 24444556666544 33358999999999997
No 319
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.07 E-value=2e-09 Score=75.89 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=40.7
Q ss_pred EEEEEeCCCccc-------------cccccccccc-cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 031083 65 KLQIWDTAGQER-------------FRTITTAYYR-GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130 (166)
Q Consensus 65 ~~~i~D~~g~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~ 130 (166)
.+++.|+||-.. ...+...+++ ..+++++|+|+...-.-.....+.+.+. +...|+++|+||.
T Consensus 126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK~ 202 (240)
T smart00053 126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITKL 202 (240)
T ss_pred ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEECC
Confidence 578899999531 1123345566 4568999998865222222222333332 2367999999999
Q ss_pred CCCC
Q 031083 131 DMDE 134 (166)
Q Consensus 131 Dl~~ 134 (166)
|...
T Consensus 203 D~~~ 206 (240)
T smart00053 203 DLMD 206 (240)
T ss_pred CCCC
Confidence 9843
No 320
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.07 E-value=1.7e-08 Score=70.66 Aligned_cols=89 Identities=25% Similarity=0.226 Sum_probs=65.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccc----c---cccccc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----R---TITTAY 84 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~~~~ 84 (166)
....-+|+++|.|.+|||||+..+...........+++.+.....+.+++ ..+.+.|+||.-.- . ......
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEE
Confidence 45678999999999999999999998666555555556666777888888 45777799983211 1 112334
Q ss_pred cccccEEEEEEECCChhh
Q 031083 85 YRGAMGILLVYDVTDESS 102 (166)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s 102 (166)
.+.+|.+++|.|++..+.
T Consensus 137 ArtaDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 137 ARTADLILMVLDATKSED 154 (364)
T ss_pred eecccEEEEEecCCcchh
Confidence 467999999999998554
No 321
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=3e-09 Score=75.80 Aligned_cols=142 Identities=19% Similarity=0.242 Sum_probs=95.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhc----------------CCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSD----------------DSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 74 (166)
....++||..+|.-..|||||...+.. +..+.+... ++.+....+.++..+..+...|+||+
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~r--GITIntahveyet~~rhyahVDcPGH 85 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKAR--GITINTAHVEYETANRHYAHVDCPGH 85 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhc--CceeccceeEEecCCceEEeccCCCh
Confidence 346789999999999999999998864 112233333 34455555555444455666799999
Q ss_pred cccccccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCCcc--cchHHHHHHH
Q 031083 75 ERFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNV-NKILVGNKADMDESKRA--VPTAKGQELA 148 (166)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~-piivv~~K~Dl~~~~~~--~~~~~~~~~~ 148 (166)
..|-........+.|+.|+|++++| |++-+.+- +.+.. .+ .+++++||+|+.++... .-..|++++.
T Consensus 86 aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-----larqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLL 158 (394)
T COG0050 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL-----LARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELL 158 (394)
T ss_pred HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-----hhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHH
Confidence 9887777777778999999999998 44444321 22222 33 57889999999653332 2244677788
Q ss_pred HHhCC-----eEEEEecc
Q 031083 149 DEYGI-----KFFETVSM 161 (166)
Q Consensus 149 ~~~~~-----~~~~~Sa~ 161 (166)
.++++ |+..-||+
T Consensus 159 s~y~f~gd~~Pii~gSal 176 (394)
T COG0050 159 SEYGFPGDDTPIIRGSAL 176 (394)
T ss_pred HHcCCCCCCcceeechhh
Confidence 88874 56666654
No 322
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.01 E-value=5e-09 Score=77.20 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=52.8
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc-ccchH
Q 031083 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTA 142 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~-~~~~~ 142 (166)
+.+.|.||+|.-+.... ....+|.++++.+....+....+. ..+. ...-++|.||.|+..... .....
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~-----E~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIM-----ELADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhh-----hhhheEEeehhcccchhHHHHHHH
Confidence 45788999995432221 355799999997644444443322 2121 122389999999843321 11122
Q ss_pred HHHHHHHH-------hCCeEEEEecccCCCC
Q 031083 143 KGQELADE-------YGIKFFETVSMFNNEW 166 (166)
Q Consensus 143 ~~~~~~~~-------~~~~~~~~Sa~~~~~v 166 (166)
+.+..... +..+++.+||++|.|+
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GI 248 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGI 248 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCH
Confidence 22222221 2258999999999875
No 323
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.98 E-value=1.9e-09 Score=78.83 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=52.2
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchH-
Q 031083 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTA- 142 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~- 142 (166)
+.+.|.|++|.-... ......+|.++++-. +.+.+++..+...+. ..|.++|+||+|+..........
T Consensus 127 ~D~viidT~G~~~~e---~~i~~~aD~i~vv~~---~~~~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 127 YDVIIVETVGVGQSE---VDIANMADTFVVVTI---PGTGDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCEEEEeCCCCchhh---hHHHHhhceEEEEec---CCccHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHHH
Confidence 567888999843211 234566787777743 233344444444342 46789999999995432110000
Q ss_pred ----HHHHHHH---HhCCeEEEEecccCCCC
Q 031083 143 ----KGQELAD---EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 143 ----~~~~~~~---~~~~~~~~~Sa~~~~~v 166 (166)
....+.. .+..+++.+||++|+|+
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi 226 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGI 226 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCH
Confidence 0011111 12346999999999875
No 324
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.95 E-value=6.1e-09 Score=76.75 Aligned_cols=155 Identities=20% Similarity=0.166 Sum_probs=94.9
Q ss_pred ccCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccc--------------cceeEeEEEEEEECCeE---------
Q 031083 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFIT--------------TIGIDFKIRTIELDGKR--------- 63 (166)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~--------- 63 (166)
+..+..+-++.+.+.|..+.|||||+-.|.-+......-. ..+-+.....+.+++.+
T Consensus 109 r~~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld 188 (527)
T COG5258 109 RKTEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLD 188 (527)
T ss_pred ecccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCccc
Confidence 4455677889999999999999999999876443211111 01112222333332211
Q ss_pred ------------EEEEEEeCCCcccccc--ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 031083 64 ------------IKLQIWDTAGQERFRT--ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNK 129 (166)
Q Consensus 64 ------------~~~~i~D~~g~~~~~~--~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K 129 (166)
--+.|.|+.|++.|-. ++-.+-.+.|..++++.+++.-+ .+.+-..-+.- -...|++++.||
T Consensus 189 ~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~--a~~lPviVvvTK 264 (527)
T COG5258 189 EAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIAL--AMELPVIVVVTK 264 (527)
T ss_pred HHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhh--hhcCCEEEEEEe
Confidence 2366789999998755 34445567999999999998544 22222222221 237899999999
Q ss_pred CCCCCCCc-ccchHHHHHHHH----------------------HhC---CeEEEEecccCCC
Q 031083 130 ADMDESKR-AVPTAKGQELAD----------------------EYG---IKFFETVSMFNNE 165 (166)
Q Consensus 130 ~Dl~~~~~-~~~~~~~~~~~~----------------------~~~---~~~~~~Sa~~~~~ 165 (166)
+|+.++++ +...+++..+.+ ..+ .|+|.+||.||++
T Consensus 265 ~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~G 326 (527)
T COG5258 265 IDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEG 326 (527)
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCcc
Confidence 99954333 222223322222 112 4899999999986
No 325
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.8e-08 Score=75.43 Aligned_cols=140 Identities=21% Similarity=0.173 Sum_probs=93.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC---CCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
-|.-.|.-..|||||++.+.+.. .+++....++++.....+...+ ..+.|.|.||++++-......+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 46677888899999999999853 3455556566666655555554 478889999999877666666677999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHh---CCeEEEEecccCCCC
Q 031083 94 VYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY---GIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~v 166 (166)
|+++++ +.+.|.+. +.+... ....++|+||+|..++.+- .+..+++.... +.+++.+|+++|+++
T Consensus 80 vV~~deGl~~qtgEhL~-----iLdllg-i~~giivltk~D~~d~~r~--e~~i~~Il~~l~l~~~~i~~~s~~~g~GI 150 (447)
T COG3276 80 VVAADEGLMAQTGEHLL-----ILDLLG-IKNGIIVLTKADRVDEARI--EQKIKQILADLSLANAKIFKTSAKTGRGI 150 (447)
T ss_pred EEeCccCcchhhHHHHH-----HHHhcC-CCceEEEEeccccccHHHH--HHHHHHHHhhcccccccccccccccCCCH
Confidence 999975 33433322 222222 2346999999998544311 11222333222 368899999999874
No 326
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2e-08 Score=73.74 Aligned_cols=116 Identities=19% Similarity=0.226 Sum_probs=75.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCC---CccccceeEeEEEEEEECCe------E---------------------
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTT---SFITTIGIDFKIRTIELDGK------R--------------------- 63 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~------~--------------------- 63 (166)
...=|+++|+-..||||+|+.|+.+.++. ...||+ ++....+.-+.. .
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 34568999999999999999999988853 222322 222222111110 0
Q ss_pred ------------EEEEEEeCCCcc-----------ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCC
Q 031083 64 ------------IKLQIWDTAGQE-----------RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120 (166)
Q Consensus 64 ------------~~~~i~D~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 120 (166)
-.+++.|+||-- .|....+=|...+|.|+++||....+--++....+..+. +..
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~E 211 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHE 211 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCc
Confidence 137889999921 123334456678999999999887665556555555554 335
Q ss_pred CcEEEEEeCCCCCC
Q 031083 121 VNKILVGNKADMDE 134 (166)
Q Consensus 121 ~piivv~~K~Dl~~ 134 (166)
-.+-||+||+|+.+
T Consensus 212 dkiRVVLNKADqVd 225 (532)
T KOG1954|consen 212 DKIRVVLNKADQVD 225 (532)
T ss_pred ceeEEEeccccccC
Confidence 57999999999843
No 327
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.88 E-value=1.1e-08 Score=69.00 Aligned_cols=138 Identities=18% Similarity=0.139 Sum_probs=75.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEE---------------EEEEE-CCe----------------
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKI---------------RTIEL-DGK---------------- 62 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~-~~~---------------- 62 (166)
.++|.|.|++|||||+|+.+++..--......-.+.+.+. ..+.- +++
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 5899999999999999999987521111000001111110 00100 111
Q ss_pred ---EEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCc
Q 031083 63 ---RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD--NVNKILVGNKADMDESKR 137 (166)
Q Consensus 63 ---~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~~K~Dl~~~~~ 137 (166)
...+.|.+..| +... ...+.-..+.-|+|+|.+..+-. -+...+ -..-++|.||.|| ...-
T Consensus 93 ~~~~~Dll~iEs~G--NL~~-~~sp~L~d~~~v~VidvteGe~~----------P~K~gP~i~~aDllVInK~DL-a~~v 158 (202)
T COG0378 93 DFPDLDLLFIESVG--NLVC-PFSPDLGDHLRVVVIDVTEGEDI----------PRKGGPGIFKADLLVINKTDL-APYV 158 (202)
T ss_pred cCCcCCEEEEecCc--ceec-ccCcchhhceEEEEEECCCCCCC----------cccCCCceeEeeEEEEehHHh-HHHh
Confidence 12355556665 1111 11111123377888888864321 111011 1145889999999 3333
Q ss_pred ccchHHHHHHHHHhC--CeEEEEecccCCCC
Q 031083 138 AVPTAKGQELADEYG--IKFFETVSMFNNEW 166 (166)
Q Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v 166 (166)
....+.+.+-+++.+ .+++++|+++|++.
T Consensus 159 ~~dlevm~~da~~~np~~~ii~~n~ktg~G~ 189 (202)
T COG0378 159 GADLEVMARDAKEVNPEAPIIFTNLKTGEGL 189 (202)
T ss_pred CccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence 444566777777775 89999999999873
No 328
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.88 E-value=7.5e-09 Score=76.95 Aligned_cols=84 Identities=18% Similarity=0.065 Sum_probs=64.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeE---------------EEEEEEeCCCccc---
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQER--- 76 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~--- 76 (166)
+++.++|.|++|||||++.+++... .....|.++++.....+.+.+.+ .++.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999877 66656777777777777776642 3678889999432
Q ss_pred ----cccccccccccccEEEEEEECCC
Q 031083 77 ----FRTITTAYYRGAMGILLVYDVTD 99 (166)
Q Consensus 77 ----~~~~~~~~~~~~d~~i~v~d~~~ 99 (166)
.....-..++.+|++++|+++.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 11123345678999999999863
No 329
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=9.6e-09 Score=71.40 Aligned_cols=119 Identities=18% Similarity=0.260 Sum_probs=79.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEE--EEECCeEEEEEEEeCCCcccccc-c--cccccccccE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRT--IELDGKRIKLQIWDTAGQERFRT-I--TTAYYRGAMG 90 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~~~~-~--~~~~~~~~d~ 90 (166)
.+|+++|-..+||||+-+..+.+..+.+..- .+.+.+. -.+.+.-+.+.+||.|||..+-. . ....++.+.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlf---lESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLF---LESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeE---eeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 5699999999999999888887654433221 1111111 11122336799999999875432 1 2446788999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh--cCCCCcEEEEEeCCCCCCCCcc
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQH--AADNVNKILVGNKADMDESKRA 138 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piivv~~K~Dl~~~~~~ 138 (166)
+|+|+|+.+ +..+.+..+...+.+. .++++.+-+...|.|-..++..
T Consensus 105 LifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~k 153 (347)
T KOG3887|consen 105 LIFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFK 153 (347)
T ss_pred EEEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhh
Confidence 999999876 4556666666666553 3568889999999997544433
No 330
>PRK12289 GTPase RsgA; Reviewed
Probab=98.86 E-value=3.5e-08 Score=73.50 Aligned_cols=83 Identities=14% Similarity=0.170 Sum_probs=57.8
Q ss_pred ccccccccccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEE
Q 031083 78 RTITTAYYRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFF 156 (166)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (166)
+.+....+.++|.+++|+|+.+++ ....+..|+.... ..+.|+++|+||+||... .+ .++..+....+++.++
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~-~~--~~~~~~~~~~~g~~v~ 153 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSP-TE--QQQWQDRLQQWGYQPL 153 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCCh-HH--HHHHHHHHHhcCCeEE
Confidence 344455688999999999999876 4445566665442 237899999999999422 11 1222333356788999
Q ss_pred EEecccCCCC
Q 031083 157 ETVSMFNNEW 166 (166)
Q Consensus 157 ~~Sa~~~~~v 166 (166)
.+||++|+|+
T Consensus 154 ~iSA~tg~GI 163 (352)
T PRK12289 154 FISVETGIGL 163 (352)
T ss_pred EEEcCCCCCH
Confidence 9999999875
No 331
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.84 E-value=8.5e-09 Score=74.76 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=68.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeE---------------EEEEEEeCCCccc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQER 76 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~ 76 (166)
....+++.++|.|++|||||+|.+++....+...|.++++.....+.+.+.+ ..++++|+.|.-.
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 3467899999999999999999999999989999999999887777664332 3689999998321
Q ss_pred -------cccccccccccccEEEEEEECCC
Q 031083 77 -------FRTITTAYYRGAMGILLVYDVTD 99 (166)
Q Consensus 77 -------~~~~~~~~~~~~d~~i~v~d~~~ 99 (166)
.-..+-.-++.+|+++.|+++..
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 22233445678999999998764
No 332
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.82 E-value=1.3e-08 Score=66.34 Aligned_cols=54 Identities=26% Similarity=0.295 Sum_probs=37.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 74 (166)
+++++|.+|+|||||+|++.+........ ..+.+.....+..++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876643222 112223333444443 4789999994
No 333
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.82 E-value=2.1e-08 Score=72.91 Aligned_cols=80 Identities=9% Similarity=0.095 Sum_probs=59.6
Q ss_pred cccccccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEe
Q 031083 81 TTAYYRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETV 159 (166)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (166)
.+..+.++|.+++|+|+.++. ++..+..|+..+.. .+.|+++|+||+|+.+. . .......+....+.+++.+|
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~-~--~~~~~~~~~~~~g~~v~~vS 145 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDD-E--EEELELVEALALGYPVLAVS 145 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCCh-H--HHHHHHHHHHhCCCeEEEEE
Confidence 344588999999999999987 77788887766543 36899999999999432 1 11222334456788999999
Q ss_pred cccCCCC
Q 031083 160 SMFNNEW 166 (166)
Q Consensus 160 a~~~~~v 166 (166)
|+++.++
T Consensus 146 A~~g~gi 152 (287)
T cd01854 146 AKTGEGL 152 (287)
T ss_pred CCCCccH
Confidence 9999874
No 334
>PRK00098 GTPase RsgA; Reviewed
Probab=98.80 E-value=2.7e-08 Score=72.75 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=56.3
Q ss_pred ccccccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEeccc
Q 031083 84 YYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMF 162 (166)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (166)
...++|.+++|+|+.++++.... ..|+..+.. .+.|+++|+||+|+.+. .. ...+..+..+..+.+++++||++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~-~~-~~~~~~~~~~~~g~~v~~vSA~~ 151 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDD-LE-EARELLALYRAIGYDVLELSAKE 151 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCC-HH-HHHHHHHHHHHCCCeEEEEeCCC
Confidence 35899999999999988765544 556555432 36899999999999422 11 22334455567788999999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
|+|+
T Consensus 152 g~gi 155 (298)
T PRK00098 152 GEGL 155 (298)
T ss_pred CccH
Confidence 9874
No 335
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=7.5e-08 Score=70.08 Aligned_cols=143 Identities=16% Similarity=0.199 Sum_probs=97.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhc----------------CCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSD----------------DSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 74 (166)
....++||.-+|....|||||--.+.. +..+++.. .++.+....+.|......+-=.|+||+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEka--RGITIn~aHveYeTa~RhYaH~DCPGH 127 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKA--RGITINAAHVEYETAKRHYAHTDCPGH 127 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhh--ccceEeeeeeeeeccccccccCCCCch
Confidence 456789999999999999999988864 11123322 344555566666444444555699999
Q ss_pred cccccccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCccc--chHHHHHHHH
Q 031083 75 ERFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAV--PTAKGQELAD 149 (166)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~--~~~~~~~~~~ 149 (166)
..|-......-.+.|+.|+|++++| |++-+.+- +.+... -..+++..||.|+.++..-. -.-|++++..
T Consensus 128 ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlL-----LArQVG-V~~ivvfiNKvD~V~d~e~leLVEmE~RElLs 201 (449)
T KOG0460|consen 128 ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLL-----LARQVG-VKHIVVFINKVDLVDDPEMLELVEMEIRELLS 201 (449)
T ss_pred HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHH-----HHHHcC-CceEEEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 9888777777788999999999999 44443322 222222 23588999999996443322 2346778888
Q ss_pred HhC-----CeEEEEecc
Q 031083 150 EYG-----IKFFETVSM 161 (166)
Q Consensus 150 ~~~-----~~~~~~Sa~ 161 (166)
++| +|++.-||+
T Consensus 202 e~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 202 EFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HcCCCCCCCCeeecchh
Confidence 886 577776654
No 336
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.75 E-value=2.7e-08 Score=69.97 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=52.6
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhh----------HHHHHHHHHHHHHh-cCCCCcEEEEEeCC
Q 031083 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS----------FNNIRNWMRNIDQH-AADNVNKILVGNKA 130 (166)
Q Consensus 62 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~-~~~~~piivv~~K~ 130 (166)
..+++.++|.+||...+..|...+.++.++|||.++++.+- +.+.-.++..+-++ ....+.+|+.+||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 34779999999999889999999999999999999886221 22222333333222 22367899999999
Q ss_pred CCC
Q 031083 131 DMD 133 (166)
Q Consensus 131 Dl~ 133 (166)
|+.
T Consensus 280 Dll 282 (379)
T KOG0099|consen 280 DLL 282 (379)
T ss_pred HHH
Confidence 983
No 337
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.75 E-value=2.7e-08 Score=68.16 Aligned_cols=82 Identities=15% Similarity=0.091 Sum_probs=53.8
Q ss_pred cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHH-----HHh
Q 031083 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELA-----DEY 151 (166)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~-----~~~ 151 (166)
+...+..+++.+|++++|+|++++... |...+... ..+.|+++|+||+|+... .....+.+.+. +..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPK--DKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCC--CCCHHHHHHHHHHHHHhhc
Confidence 466677888999999999999985421 11222111 236799999999998432 22233344443 333
Q ss_pred CC---eEEEEecccCCCC
Q 031083 152 GI---KFFETVSMFNNEW 166 (166)
Q Consensus 152 ~~---~~~~~Sa~~~~~v 166 (166)
+. .++.+||++|.|+
T Consensus 96 ~~~~~~i~~vSA~~~~gi 113 (190)
T cd01855 96 GLKPKDVILISAKKGWGV 113 (190)
T ss_pred CCCcccEEEEECCCCCCH
Confidence 43 6899999999875
No 338
>PRK12288 GTPase RsgA; Reviewed
Probab=98.73 E-value=6.2e-08 Score=72.10 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=57.8
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCC
Q 031083 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNN 164 (166)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (166)
..++|.+++|++.....++..+..|+.... ..+.|+++|+||+|+.+........+.....+..+.+++++||++++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~---~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE---TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH---hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 467999999999988888988888876543 23689999999999943321111223334445678899999999998
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
|+
T Consensus 195 Gi 196 (347)
T PRK12288 195 GL 196 (347)
T ss_pred CH
Confidence 74
No 339
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.71 E-value=7.5e-08 Score=81.80 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=71.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCc----cccceeE-eEEEEEEECCeEEEEEEEeCCCc----c----ccccccccc
Q 031083 18 LLLIGDSGVGKSCLLLRFSDDSFTTSF----ITTIGID-FKIRTIELDGKRIKLQIWDTAGQ----E----RFRTITTAY 84 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~----~----~~~~~~~~~ 84 (166)
.+|+|++|+||||+|+.- +-.++-.. ..+.+.. .....+.+.+ +-+++|++|. + .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence 689999999999999987 33342211 1111110 1112333333 3468899992 1 223345444
Q ss_pred c---------ccccEEEEEEECCChh-----h----HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031083 85 Y---------RGAMGILLVYDVTDES-----S----FNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (166)
Q Consensus 85 ~---------~~~d~~i~v~d~~~~~-----s----~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~ 133 (166)
+ +..++||+++|+.+-- . -..++..++++.+......||.|+.||+|+.
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 4 3589999999987622 1 1345667778888888899999999999984
No 340
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=9.7e-08 Score=75.64 Aligned_cols=119 Identities=23% Similarity=0.226 Sum_probs=85.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCC--------------CCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSF--------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 75 (166)
+..+...+++++..-..|||||...|..... ..+...+.++......+..-.+.+.+.++|+|||.
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 4567788999999999999999999986322 12333444555555555555566789999999999
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031083 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132 (166)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl 132 (166)
.|.+......+-+|+.++++|+...-..+.. ..+.+..-.+...++|.||+|.
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~----~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTY----AVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHH----HHHHHHHHccCceEEEEehhhh
Confidence 9999999989999999999998863222211 1222222336678999999993
No 341
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.68 E-value=8.6e-08 Score=64.60 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=38.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeEEEEEEEeCCC
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 73 (166)
...++++++|.+++|||||+|++.+... .....+..+ .....+..+. .+.++|+||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T--~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVT--KSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeE--cceEEEEeCC---CEEEEECcC
Confidence 4458999999999999999999998654 233333333 2223333332 477889998
No 342
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.68 E-value=8.9e-08 Score=64.50 Aligned_cols=59 Identities=24% Similarity=0.321 Sum_probs=39.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 74 (166)
.+..++++++|.+++|||||++++.+..+... ....+.......+..+ ..+.++||||-
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 34558999999999999999999998765322 1111222333333433 34789999993
No 343
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.67 E-value=8.8e-08 Score=62.49 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=52.1
Q ss_pred cccccccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEec
Q 031083 83 AYYRGAMGILLVYDVTDESSFN--NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
..++.+|++++|+|+.++.+.. .+..++... ..+.|+++|+||+|+.+. . ...+..+..+..+..++++||
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~-~--~~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTE-E--QRKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCH-H--HHHHHHHHHHhcCCeEEEEEe
Confidence 3467899999999999876543 333444332 136799999999998322 1 122344555566788999999
Q ss_pred ccCCC
Q 031083 161 MFNNE 165 (166)
Q Consensus 161 ~~~~~ 165 (166)
+++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98864
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.65 E-value=1.3e-07 Score=62.81 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=35.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCC-CccccceeEeEEEEEEECCeEEEEEEEeCCC
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 73 (166)
...+|+++|.+|+|||||+|++.+..... ...+..+ .....+..+. .+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGET--KVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCee--EeEEEEEcCC---CEEEEECcC
Confidence 45789999999999999999999855422 2222222 2222222222 367889998
No 345
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.64 E-value=1.3e-07 Score=67.10 Aligned_cols=145 Identities=18% Similarity=0.132 Sum_probs=78.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccc-cceeEeEEEEEEECCeEEEEEEEeCCCc----------cccccc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTI 80 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~ 80 (166)
...+.+++++|.+++|||+|+|.++.......... ..+.......+.+.. .+.+.|.||- +.+...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence 56779999999999999999999987544322222 223233334444433 5677799991 112222
Q ss_pred ccccccc---ccEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc----------ccchHHHH
Q 031083 81 TTAYYRG---AMGILLVYDVTDES--SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR----------AVPTAKGQ 145 (166)
Q Consensus 81 ~~~~~~~---~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~----------~~~~~~~~ 145 (166)
...|+.+ .--+.+++|++-+- .-.....|+-+ .++|..+|.||+|...... .+.+...-
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 2233322 22355556655421 11122233333 3899999999999732111 11112112
Q ss_pred HHHHHhCCeEEEEecccCCC
Q 031083 146 ELADEYGIKFFETVSMFNNE 165 (166)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~ 165 (166)
+-+.....++..+|+.++.+
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~G 303 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLG 303 (320)
T ss_pred ccceeccCCceeeecccccC
Confidence 22222235777788888765
No 346
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.64 E-value=1.5e-07 Score=67.95 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=30.4
Q ss_pred CCcEEEEEeCCCCCCCCcccchHHHHHHHHHh--CCeEEEEecccCCCC
Q 031083 120 NVNKILVGNKADMDESKRAVPTAKGQELADEY--GIKFFETVSMFNNEW 166 (166)
Q Consensus 120 ~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v 166 (166)
...-++|+||+|+.+. .....++..+..+.. ..+++.+||++|+++
T Consensus 230 ~~ADIVVLNKiDLl~~-~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGl 277 (290)
T PRK10463 230 AAASLMLLNKVDLLPY-LNFDVEKCIACAREVNPEIEIILISATSGEGM 277 (290)
T ss_pred hcCcEEEEEhHHcCcc-cHHHHHHHHHHHHhhCCCCcEEEEECCCCCCH
Confidence 4567999999999431 112233344444444 378999999999874
No 347
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=9.8e-07 Score=69.45 Aligned_cols=146 Identities=14% Similarity=0.199 Sum_probs=83.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeE---------------------------------------
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFK--------------------------------------- 53 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--------------------------------------- 53 (166)
....||++.|..++||||++|++...+..++....++..+.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 45689999999999999999999875443221111110000
Q ss_pred ----EEEEEECCeEE-----EEEEEeCCCcc---ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC
Q 031083 54 ----IRTIELDGKRI-----KLQIWDTAGQE---RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNV 121 (166)
Q Consensus 54 ----~~~~~~~~~~~-----~~~i~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 121 (166)
...+.+++... -+++.|.||-+ ...+-...+..++|++|||.++.+.-+..+ ..++....+. +.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---KP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---CC
Confidence 11112222111 25778999943 333334566778999999999998655433 3344444332 45
Q ss_pred cEEEEEeCCCCCCCCcccchHHHHHHHHHh--------CCeEEEEecccC
Q 031083 122 NKILVGNKADMDESKRAVPTAKGQELADEY--------GIKFFETVSMFN 163 (166)
Q Consensus 122 piivv~~K~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~ 163 (166)
.|+|+-||-|...+..+- .+++..-.+++ .-.+|++||+.-
T Consensus 263 niFIlnnkwDasase~ec-~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e~ 311 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPEC-KEDVLKQIHELSVVTEKEAADRVFFVSAKEV 311 (749)
T ss_pred cEEEEechhhhhcccHHH-HHHHHHHHHhcCcccHhhhcCeeEEEeccch
Confidence 678888888984432221 12222221122 236788887653
No 348
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.62 E-value=7.1e-08 Score=72.31 Aligned_cols=85 Identities=20% Similarity=0.246 Sum_probs=59.7
Q ss_pred ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHH----HHHH
Q 031083 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ----ELAD 149 (166)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~----~~~~ 149 (166)
.+.|..+...+.+.++++++|+|+.+... .|...+.+... +.|+++|+||+|+.+. ....+++. ++++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~-~~piilV~NK~DLl~k--~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVG-GNPVLLVGNKIDLLPK--SVNLSKIKEWMKKRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhC-CCCEEEEEEchhhCCC--CCCHHHHHHHHHHHHH
Confidence 45677777888889999999999987442 23444444333 5699999999999432 22233333 4466
Q ss_pred HhCC---eEEEEecccCCCC
Q 031083 150 EYGI---KFFETVSMFNNEW 166 (166)
Q Consensus 150 ~~~~---~~~~~Sa~~~~~v 166 (166)
+.++ .++++||++|.|+
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv 141 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGI 141 (360)
T ss_pred HcCCCcCcEEEecCCCCCCH
Confidence 7776 4899999999875
No 349
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=5.1e-07 Score=66.71 Aligned_cols=148 Identities=16% Similarity=0.190 Sum_probs=87.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCcc----------------ccc-------eeEeEEEEEEEC--------
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFI----------------TTI-------GIDFKIRTIELD-------- 60 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----------------~~~-------~~~~~~~~~~~~-------- 60 (166)
.-..++++++|...+|||||+-.|..+......- .|. +.+..-+.+.+.
T Consensus 164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence 4567999999999999999999987654422110 111 111111111121
Q ss_pred --CeEEEEEEEeCCCccccccccccccc--cccEEEEEEECCChhhHHHHH--HHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031083 61 --GKRIKLQIWDTAGQERFRTITTAYYR--GAMGILLVYDVTDESSFNNIR--NWMRNIDQHAADNVNKILVGNKADMDE 134 (166)
Q Consensus 61 --~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piivv~~K~Dl~~ 134 (166)
...--++|.|+.|+..|.......+. .-|..++++++...-.+..-. .+...+ ++|++++.+|+|+..
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL------~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAAL------NIPFFVLVTKMDLVD 317 (591)
T ss_pred HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHh------CCCeEEEEEeecccc
Confidence 11124788999999988765433333 357788888887744432111 122222 899999999999943
Q ss_pred CCc-c----------------------cchHHHHHHHHHh----CCeEEEEecccCCC
Q 031083 135 SKR-A----------------------VPTAKGQELADEY----GIKFFETVSMFNNE 165 (166)
Q Consensus 135 ~~~-~----------------------~~~~~~~~~~~~~----~~~~~~~Sa~~~~~ 165 (166)
... + ...+++-.-+.+. -.|+|-+|+.+|++
T Consensus 318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGeg 375 (591)
T KOG1143|consen 318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEG 375 (591)
T ss_pred chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccc
Confidence 211 0 1233443333333 24888999998876
No 350
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.61 E-value=2.1e-07 Score=61.67 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=37.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCC
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 73 (166)
...+++++|.+++|||||++++.+... ....++.+.......+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 457889999999999999999997543 22233333322222222222 588999998
No 351
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=6.1e-07 Score=69.59 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=84.3
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
+...+..+=++|+||+|+||||||+.|...-.... .. ++.-....+.++..+++|.++|.. .+. .....+-+
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~t----i~-~i~GPiTvvsgK~RRiTflEcp~D--l~~-miDvaKIa 134 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQT----ID-EIRGPITVVSGKTRRITFLECPSD--LHQ-MIDVAKIA 134 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhh----hh-ccCCceEEeecceeEEEEEeChHH--HHH-HHhHHHhh
Confidence 34556678888999999999999999986332111 11 122222345667788999999942 222 22234458
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHH-----HHHH-h-CCeEEEEecc
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQE-----LADE-Y-GIKFFETVSM 161 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~-----~~~~-~-~~~~~~~Sa~ 161 (166)
|.+++++|.+-.--++ ...+++.+..+.. ..++-|+|..|+..+..- ...++. |..+ + |+.+|..|-.
T Consensus 135 DLVlLlIdgnfGfEME-TmEFLnil~~HGm--PrvlgV~ThlDlfk~~st--Lr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 135 DLVLLLIDGNFGFEME-TMEFLNILISHGM--PRVLGVVTHLDLFKNPST--LRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred heeEEEeccccCceeh-HHHHHHHHhhcCC--CceEEEEeecccccChHH--HHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 9999999987532222 2345555555543 357889999999543321 122222 2211 1 5777777755
Q ss_pred c
Q 031083 162 F 162 (166)
Q Consensus 162 ~ 162 (166)
.
T Consensus 210 ~ 210 (1077)
T COG5192 210 E 210 (1077)
T ss_pred c
Confidence 4
No 352
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.60 E-value=1.8e-06 Score=60.72 Aligned_cols=88 Identities=20% Similarity=0.081 Sum_probs=53.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC--CCCCCc---cccceeEeEEEEEEECCeEEEEEEEeCCCcccccc------c
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD--SFTTSF---ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------I 80 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~ 80 (166)
.....-|.|+|++++|||+|+|.+++. .|.... ..|.++-.....+.. +....+.++||+|...... .
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhh
Confidence 345677999999999999999999998 553221 222332222222211 2346899999999543221 1
Q ss_pred ccccccc--ccEEEEEEECCCh
Q 031083 81 TTAYYRG--AMGILLVYDVTDE 100 (166)
Q Consensus 81 ~~~~~~~--~d~~i~v~d~~~~ 100 (166)
....+.. ++.+|+..+....
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHHhCEEEEeccCccc
Confidence 1222233 7788887776653
No 353
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=2e-07 Score=66.23 Aligned_cols=63 Identities=25% Similarity=0.451 Sum_probs=44.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccce--eEeEEE--EEEECCeEEEEEEEeCCC
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIG--IDFKIR--TIELDGKRIKLQIWDTAG 73 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~i~D~~g 73 (166)
....-++|+.+|..|.|||||+.+|++..|..+..+-.. ...... ...-.+-.+.+++.|+.|
T Consensus 38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 345679999999999999999999999887554333222 122222 233355667889999998
No 354
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.57 E-value=9.1e-08 Score=63.42 Aligned_cols=81 Identities=17% Similarity=0.110 Sum_probs=50.9
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEE
Q 031083 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFET 158 (166)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (166)
.+....++++|++++|+|++++..... ..+...+. ..+.|+++|+||+|+.+.. . ..+...+....+.+++.+
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~-~--~~~~~~~~~~~~~~~~~i 76 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKE-V--LEKWKSIKESEGIPVVYV 76 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHH-H--HHHHHHHHHhCCCcEEEE
Confidence 344556678999999999987644222 11222221 1257999999999983211 1 112223444556789999
Q ss_pred ecccCCCC
Q 031083 159 VSMFNNEW 166 (166)
Q Consensus 159 Sa~~~~~v 166 (166)
||++|.++
T Consensus 77 Sa~~~~gi 84 (156)
T cd01859 77 SAKERLGT 84 (156)
T ss_pred EccccccH
Confidence 99999874
No 355
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.56 E-value=3.1e-07 Score=66.56 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=38.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCC-ccccceeEeEEEEEEECCeEEEEEEEeCCCc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 74 (166)
...++++++|.+++|||||+|++.+...... ..+..+ .....+..+. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVT--KGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCee--cceEEEEeCC---CEEEEECCCc
Confidence 4568999999999999999999998654222 222222 2223344432 4688999995
No 356
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.56 E-value=4e-07 Score=66.34 Aligned_cols=57 Identities=28% Similarity=0.367 Sum_probs=39.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeEEEEEEEeCCCc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 74 (166)
...++++++|.+++|||||+|++.+... .....+..+.. ...+..+. .+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeCC---cEEEEECCCc
Confidence 4568999999999999999999998664 22333333322 23334332 4778999994
No 357
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.55 E-value=1.9e-07 Score=63.92 Aligned_cols=54 Identities=28% Similarity=0.359 Sum_probs=36.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCC---------CCCccccceeEeEEEEEEECCeEEEEEEEeCCC
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 73 (166)
..++.++|.+|+|||||+|.|.+... .....+.++ .....+..+. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT--LDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee--eeeEEEecCC---CCEEEeCcC
Confidence 36899999999999999999997542 222223222 2333334332 468899998
No 358
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=4.7e-08 Score=72.97 Aligned_cols=127 Identities=17% Similarity=0.168 Sum_probs=90.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc--------CCCCCCc--------cccceeEeEEEEEEECCeEEEEEEEeCCCcc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSD--------DSFTTSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~--------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 75 (166)
..+..+|.++..-.+||||.-.++.. +...... ....++.+++.-+.++=+.+++.++|+||+.
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence 34567899999999999999999764 1111111 1112445555555554455788889999999
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchH
Q 031083 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTA 142 (166)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~ 142 (166)
.|+-....+++-.|+++.|||.+-.-.-+.+.-|.+.-. .++|-+.+.||+|......+...+
T Consensus 114 df~leverclrvldgavav~dasagve~qtltvwrqadk----~~ip~~~finkmdk~~anfe~avd 176 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADK----FKIPAHCFINKMDKLAANFENAVD 176 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccc----cCCchhhhhhhhhhhhhhhhhHHH
Confidence 999888999999999999999997555555666666553 378999999999985555543333
No 359
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.51 E-value=2.1e-07 Score=68.83 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=64.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCC------------------CccccceeEe--------------------E
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT------------------SFITTIGIDF--------------------K 53 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~------------------~~~~~~~~~~--------------------~ 53 (166)
.=.+++|.++|...+|||||+-.|..+.... ......+.++ .
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 3457899999999999999998887643321 1111111111 0
Q ss_pred EEEEEECCeEEEEEEEeCCCcccccccccccc--ccccEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 031083 54 IRTIELDGKRIKLQIWDTAGQERFRTITTAYY--RGAMGILLVYDVTDE---SSFNNIRNWMRNIDQHAADNVNKILVGN 128 (166)
Q Consensus 54 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piivv~~ 128 (166)
...+. .+..--++|+|+.|++.|-...-..+ .--|..++++-++-. -+-+.+- + ...-++|+++|.|
T Consensus 210 WvkIc-e~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLg-----L--ALaL~VPVfvVVT 281 (641)
T KOG0463|consen 210 WVKIC-EDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLG-----L--ALALHVPVFVVVT 281 (641)
T ss_pred ceeec-cccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhh-----h--hhhhcCcEEEEEE
Confidence 11111 11223578999999998865332222 224666666665531 1111111 1 1122789999999
Q ss_pred CCCCC
Q 031083 129 KADMD 133 (166)
Q Consensus 129 K~Dl~ 133 (166)
|+|+.
T Consensus 282 KIDMC 286 (641)
T KOG0463|consen 282 KIDMC 286 (641)
T ss_pred eeccC
Confidence 99984
No 360
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.50 E-value=1.3e-08 Score=70.35 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=51.7
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEECCChhh----------HHHHHHHHHHHHH-hcCCCCcEEEEEeCCC
Q 031083 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS----------FNNIRNWMRNIDQ-HAADNVNKILVGNKAD 131 (166)
Q Consensus 63 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~-~~~~~~piivv~~K~D 131 (166)
.+.+.+.|.+|+..-+..|..+++++..++|++.++..+. +++-..++..+.. -...+.++|+.+||.|
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD 277 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 277 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence 3567788999998888899999999988888887765333 3333334443322 2345889999999999
Q ss_pred CCC
Q 031083 132 MDE 134 (166)
Q Consensus 132 l~~ 134 (166)
+.+
T Consensus 278 lLE 280 (359)
T KOG0085|consen 278 LLE 280 (359)
T ss_pred hhh
Confidence 854
No 361
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.50 E-value=3.9e-07 Score=67.33 Aligned_cols=56 Identities=32% Similarity=0.406 Sum_probs=39.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCC
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 73 (166)
....++.++|.|++|||||||+|.+.... ....| +.+.....+..+. .+.++||||
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~---~i~LlDtPG 186 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDD---GIYLLDTPG 186 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCC---CeEEecCCC
Confidence 44578999999999999999999987652 22223 3334444455544 378889999
No 362
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.42 E-value=2.9e-06 Score=62.58 Aligned_cols=138 Identities=19% Similarity=0.201 Sum_probs=75.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCC-------c--------------cccceeEeEEEEEEE-------------
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTS-------F--------------ITTIGIDFKIRTIEL------------- 59 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-------~--------------~~~~~~~~~~~~~~~------------- 59 (166)
..--++++|++|+||||++..+...-.... . ....+..+.......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 346788999999999999999864110000 0 000011111110000
Q ss_pred CCeEEEEEEEeCCCccccccc----cccc--------cccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEE
Q 031083 60 DGKRIKLQIWDTAGQERFRTI----TTAY--------YRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILV 126 (166)
Q Consensus 60 ~~~~~~~~i~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv 126 (166)
....+.+++.||+|....... .... -...+..++|.|++... .+..+..+...+ -+--+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~-------~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAV-------GLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhC-------CCCEEE
Confidence 012356899999996443221 1111 12467789999998632 233222222111 245788
Q ss_pred EeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCC
Q 031083 127 GNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNE 165 (166)
Q Consensus 127 ~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (166)
.||.|- ... .-.+..++...++|+..++ +|++
T Consensus 266 lTKlD~--t~~---~G~~l~~~~~~~~Pi~~v~--~Gq~ 297 (318)
T PRK10416 266 LTKLDG--TAK---GGVVFAIADELGIPIKFIG--VGEG 297 (318)
T ss_pred EECCCC--CCC---ccHHHHHHHHHCCCEEEEe--CCCC
Confidence 999995 222 2235667788899988887 4544
No 363
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.42 E-value=8.8e-07 Score=58.69 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=37.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeEEEEEEEeCCC
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 73 (166)
....+++++|.+++|||||+|.+.+... .....+..+.... .+..+ ..+.+.|+||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCC
Confidence 4568899999999999999999998653 2222233332332 22322 2477889998
No 364
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.36 E-value=2e-06 Score=57.21 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031083 18 LLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~ 38 (166)
+++.|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999998764
No 365
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.36 E-value=1e-06 Score=58.47 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=45.9
Q ss_pred ccccccEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecc
Q 031083 84 YYRGAMGILLVYDVTDESS--FNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSM 161 (166)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (166)
.++++|++++|+|++++.. ...+..++.. ...+.|+++|+||+|+.+.. . .......+.+.+....+.+||+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~----~~~~~p~ilVlNKiDl~~~~-~-~~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKK----EKPHKHLIFVLNKCDLVPTW-V-TARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHh----ccCCCCEEEEEEchhcCCHH-H-HHHHHHHHhcCCcEEEEEeecc
Confidence 4678999999999998643 2233333322 23357999999999993221 1 1111222222222335778999
Q ss_pred cCCCC
Q 031083 162 FNNEW 166 (166)
Q Consensus 162 ~~~~v 166 (166)
.+.++
T Consensus 79 ~~~~~ 83 (157)
T cd01858 79 NPFGK 83 (157)
T ss_pred ccccH
Confidence 88763
No 366
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.31 E-value=3e-07 Score=64.96 Aligned_cols=141 Identities=18% Similarity=0.155 Sum_probs=73.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCC-------Cccccc-------------------eeEeEEEEEEECCe----
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-------SFITTI-------------------GIDFKIRTIELDGK---- 62 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-------~~~~~~-------------------~~~~~~~~~~~~~~---- 62 (166)
..-+.|.|.|+||+|||||++.|...-... .-+|+. ....+.+.+-..+.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 345789999999999999999996410000 000000 11233333222111
Q ss_pred --------------EEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 031083 63 --------------RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGN 128 (166)
Q Consensus 63 --------------~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~ 128 (166)
.+-++|.+|.|--+.+. ....-+|.+++|..-.-.+..+.++.=+.++ .-++|.|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVN 175 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEe
Confidence 13367778876221111 2234589999999877766665555444444 4578899
Q ss_pred CCCCCCCCcccchHHHHHHHHH-------hCCeEEEEecccCCCC
Q 031083 129 KADMDESKRAVPTAKGQELADE-------YGIKFFETVSMFNNEW 166 (166)
Q Consensus 129 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~v 166 (166)
|+|.+.... ...+.+..... +.-+++.+||.+|+++
T Consensus 176 KaD~~gA~~--~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi 218 (266)
T PF03308_consen 176 KADRPGADR--TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGI 218 (266)
T ss_dssp --SHHHHHH--HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSH
T ss_pred CCChHHHHH--HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCH
Confidence 999633222 12222322221 1248999999999874
No 367
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.28 E-value=4.6e-06 Score=60.29 Aligned_cols=84 Identities=17% Similarity=0.097 Sum_probs=50.4
Q ss_pred EEEEEEeCCCcccccccccc------------ccccccEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 031083 64 IKLQIWDTAGQERFRTITTA------------YYRGAMGILLVYDVTDE-SSFNNIRNWMRNIDQHAADNVNKILVGNKA 130 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~~------------~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~~K~ 130 (166)
+.+++.|++|.......... .-...|.+++|+|++.. +.+..+..+. +.. + +.-+|.||.
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~----~~~--~-~~g~IlTKl 227 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN----EAV--G-LTGIILTKL 227 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH----hhC--C-CCEEEEEcc
Confidence 56889999996543322111 11238899999999853 2233322222 211 1 468889999
Q ss_pred CCCCCCcccchHHHHHHHHHhCCeEEEEe
Q 031083 131 DMDESKRAVPTAKGQELADEYGIKFFETV 159 (166)
Q Consensus 131 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (166)
|-... .-.+..+....++|+..++
T Consensus 228 De~~~-----~G~~l~~~~~~~~Pi~~~~ 251 (272)
T TIGR00064 228 DGTAK-----GGIILSIAYELKLPIKFIG 251 (272)
T ss_pred CCCCC-----ccHHHHHHHHHCcCEEEEe
Confidence 96222 1235666777788888777
No 368
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.27 E-value=3.5e-06 Score=55.80 Aligned_cols=73 Identities=21% Similarity=0.062 Sum_probs=44.3
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++|+|+.++.+.... ++.. ......+.|+++|+||+|+.+.. +. .+....+....+..++.+||++|.++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~~-~~-~~~~~~~~~~~~~~ii~vSa~~~~gi 73 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPKE-VL-RKWLAYLRHSYPTIPFKISATNGQGI 73 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCHH-HH-HHHHHHHHhhCCceEEEEeccCCcCh
Confidence 689999999987654321 2221 11122368999999999983221 10 11112233334567899999999874
No 369
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.25 E-value=1.3e-06 Score=57.83 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-.++++|++|+|||||+|.|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999999863
No 370
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=1.9e-06 Score=72.36 Aligned_cols=112 Identities=23% Similarity=0.266 Sum_probs=67.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC-CC---ccccceeEeEEEEEEECCeEEEEEEEeCCCcc--------ccccccccc-
Q 031083 18 LLLIGDSGVGKSCLLLRFSDDSFT-TS---FITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAY- 84 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~- 84 (166)
-+|+|++|+||||++..-.. +|+ .. .....+.......+.+.+ .-+++|+.|.. .....|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred eEEecCCCCCcchHHhcccc-cCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 47899999999999876432 121 00 001111111223344444 45677999821 223344433
Q ss_pred --------cccccEEEEEEECCChhh---------HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031083 85 --------YRGAMGILLVYDVTDESS---------FNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (166)
Q Consensus 85 --------~~~~d~~i~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~ 133 (166)
.+..++||+++|+++--+ ...++.-++++........|++|++||.|+.
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLL 269 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccc
Confidence 346899999999876111 1224455677777777799999999999983
No 371
>PRK14974 cell division protein FtsY; Provisional
Probab=98.22 E-value=4.6e-06 Score=61.88 Aligned_cols=89 Identities=15% Similarity=0.135 Sum_probs=51.3
Q ss_pred EEEEEEeCCCcccccccc----ccc--cccccEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031083 64 IKLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDESS-FNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~ 136 (166)
+.+++.||+|........ ... ....|.+++|.|+..... .+.+..+...+ + .--+|.||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~------~-~~giIlTKlD~~~~- 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV------G-IDGVILTKVDADAK- 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC------C-CCEEEEeeecCCCC-
Confidence 358899999965432211 111 124678899999876432 22222222211 2 35778999996221
Q ss_pred cccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 137 RAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
. --+..++...+.|+..++ +|++|
T Consensus 295 ~----G~~ls~~~~~~~Pi~~i~--~Gq~v 318 (336)
T PRK14974 295 G----GAALSIAYVIGKPILFLG--VGQGY 318 (336)
T ss_pred c----cHHHHHHHHHCcCEEEEe--CCCCh
Confidence 1 124666677888888877 55543
No 372
>PRK12288 GTPase RsgA; Reviewed
Probab=98.19 E-value=4.7e-06 Score=62.18 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 031083 18 LLLIGDSGVGKSCLLLRFSDDSF 40 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~~~ 40 (166)
++|+|.+|+|||||||+|.+...
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccc
Confidence 78999999999999999997543
No 373
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.19 E-value=3.5e-05 Score=50.75 Aligned_cols=57 Identities=28% Similarity=0.486 Sum_probs=40.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCC
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (166)
....||.+.|+||+||||++.++...--...+. . ..++..++.-+++..-|.+.|+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k-v--gGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYK-V--GGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCce-e--eeEEeeeeecCCeEeeeEEEEcc
Confidence 346899999999999999999987522111111 1 23566677777777778888877
No 374
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.19 E-value=2.1e-06 Score=57.84 Aligned_cols=78 Identities=19% Similarity=0.072 Sum_probs=48.3
Q ss_pred ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEe
Q 031083 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETV 159 (166)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (166)
.....++++|++++|+|++++...... .+...+ .+.|+++|+||+|+.+. .. ..+..++.+..+..++.+|
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~-~~--~~~~~~~~~~~~~~vi~iS 82 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADP-KK--TKKWLKYFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCCh-HH--HHHHHHHHHhcCCeEEEEE
Confidence 345667899999999999876542211 122221 24689999999998322 11 1112122233345789999
Q ss_pred cccCCCC
Q 031083 160 SMFNNEW 166 (166)
Q Consensus 160 a~~~~~v 166 (166)
|+++.++
T Consensus 83 a~~~~gi 89 (171)
T cd01856 83 AKSGKGV 89 (171)
T ss_pred CCCcccH
Confidence 9998764
No 375
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.16 E-value=0.00013 Score=55.21 Aligned_cols=145 Identities=19% Similarity=0.272 Sum_probs=83.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcC-----------------CCCCC----ccccceeEe---EEEEEEE-CCeEEE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDD-----------------SFTTS----FITTIGIDF---KIRTIEL-DGKRIK 65 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~-----------------~~~~~----~~~~~~~~~---~~~~~~~-~~~~~~ 65 (166)
.....+-|.|+||..+||||||+||... ..++. .--|++..+ ....+.+ ++-.++
T Consensus 13 RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~k 92 (492)
T PF09547_consen 13 RTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVK 92 (492)
T ss_pred hcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEE
Confidence 3566789999999999999999999641 11111 001111111 1223333 566688
Q ss_pred EEEEeCCC--------cc-----cc-cccc---------------cccccc--ccEEEEEEECCC----hhhHHHH-HHH
Q 031083 66 LQIWDTAG--------QE-----RF-RTIT---------------TAYYRG--AMGILLVYDVTD----ESSFNNI-RNW 109 (166)
Q Consensus 66 ~~i~D~~g--------~~-----~~-~~~~---------------~~~~~~--~d~~i~v~d~~~----~~s~~~~-~~~ 109 (166)
+.+.|+.| +. ++ ..=| +.-+.+ .-++++.-|.+= ++.+..+ .+.
T Consensus 93 VRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEerv 172 (492)
T PF09547_consen 93 VRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERV 172 (492)
T ss_pred EEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHH
Confidence 88899987 11 10 0001 111121 234666666442 5555544 355
Q ss_pred HHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecc
Q 031083 110 MRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSM 161 (166)
Q Consensus 110 ~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (166)
.+++... +.|+++++|-.+- ......+-+.++..+++.+++.+++.
T Consensus 173 I~ELk~i---gKPFvillNs~~P---~s~et~~L~~eL~ekY~vpVlpvnc~ 218 (492)
T PF09547_consen 173 IEELKEI---GKPFVILLNSTKP---YSEETQELAEELEEKYDVPVLPVNCE 218 (492)
T ss_pred HHHHHHh---CCCEEEEEeCCCC---CCHHHHHHHHHHHHHhCCcEEEeehH
Confidence 6666554 5699999998884 22234455677778888888877654
No 376
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.16 E-value=6.2e-06 Score=61.98 Aligned_cols=55 Identities=27% Similarity=0.378 Sum_probs=35.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCC------CCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 75 (166)
.++.++|.+|+|||||+|++.+... .....|.++ .....+..++ .+.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT--~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTT--LDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeE--eeEEEEEeCC---CCEEEECCCCC
Confidence 5899999999999999999997432 222223333 2233444422 24688999943
No 377
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.16 E-value=4e-05 Score=59.64 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=51.1
Q ss_pred EEEEEeCCCc-------------cccccccccccccccEEEEEEECCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCC
Q 031083 65 KLQIWDTAGQ-------------ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM-RNIDQHAADNVNKILVGNKA 130 (166)
Q Consensus 65 ~~~i~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~piivv~~K~ 130 (166)
+.++.|+||- +....+...++.+-+++|+|+---+ .+.-+... ..+.+.-+.+...|+|+||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 5678899991 1223345677888999999986433 22222222 22334445577899999999
Q ss_pred CCCCCCcccchHHHHHHHH
Q 031083 131 DMDESKRAVPTAKGQELAD 149 (166)
Q Consensus 131 Dl~~~~~~~~~~~~~~~~~ 149 (166)
|+ .+....++..++++..
T Consensus 490 Dl-AEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 490 DL-AEKNVASPSRIQQIIE 507 (980)
T ss_pred ch-hhhccCCHHHHHHHHh
Confidence 99 4445566666666654
No 378
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.13 E-value=5.2e-05 Score=57.95 Aligned_cols=87 Identities=10% Similarity=0.012 Sum_probs=47.7
Q ss_pred EEEEEEEeCCCcccccccccc------ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031083 63 RIKLQIWDTAGQERFRTITTA------YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136 (166)
Q Consensus 63 ~~~~~i~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~ 136 (166)
.+.++|+||+|.......... ...+.+.++||.|+.....-.... ..+.+. -.+--+|.||.|-..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~~---~~~~g~IlTKlD~~a-- 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKDS---VDVGSVIITKLDGHA-- 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHhc---cCCcEEEEECccCCC--
Confidence 357899999995433221111 112467899999987543222111 222211 125678899999621
Q ss_pred cccchHHHHHHHHHhCCeEEEEec
Q 031083 137 RAVPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
+. --+..+....+.|+..++.
T Consensus 254 rg---G~aLs~~~~t~~PI~fig~ 274 (429)
T TIGR01425 254 KG---GGALSAVAATKSPIIFIGT 274 (429)
T ss_pred Cc---cHHhhhHHHHCCCeEEEcC
Confidence 11 1135566666776665543
No 379
>PRK13796 GTPase YqeH; Provisional
Probab=98.10 E-value=6.6e-06 Score=61.94 Aligned_cols=54 Identities=30% Similarity=0.359 Sum_probs=34.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCC------CCCccccceeEeEEEEEEECCeEEEEEEEeCCCc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 74 (166)
.++.++|.+|+|||||||+|..... .....|.++ .....+..++. ..++||||-
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT--~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTT--LDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcc--ceeEEEEcCCC---cEEEECCCc
Confidence 4799999999999999999986431 111222222 22233334332 368899994
No 380
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.10 E-value=8e-06 Score=58.20 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|.+|+|||||+|.+.+..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 68899999999999999999753
No 381
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=7.1e-05 Score=56.31 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=71.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCC---CCCccccceeEeE----------------EEEEEECC-----------eE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSF---TTSFITTIGIDFK----------------IRTIELDG-----------KR 63 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~---~~~~~~~~~~~~~----------------~~~~~~~~-----------~~ 63 (166)
..-.++++|++|+||||++..|..... ........+.+.+ ........ ..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 345788999999999999999975311 0000111111111 00001100 12
Q ss_pred EEEEEEeCCCcccccccccc---cc---ccccEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 031083 64 IKLQIWDTAGQERFRTITTA---YY---RGAMGILLVYDVTD-ESSFNNIRNWMRNIDQHAADN--VNKILVGNKADMDE 134 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~~---~~---~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~--~piivv~~K~Dl~~ 134 (166)
..++++|++|.......... .+ ....-.++|++++. .+...++..-+.......... ..--+|.||.|-
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE-- 293 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE-- 293 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc--
Confidence 35788999995543321111 11 12345688999886 334444333333321110000 124577899994
Q ss_pred CCcccchHHHHHHHHHhCCeEEEEec
Q 031083 135 SKRAVPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
.. ..-.+..++...++|+..++.
T Consensus 294 t~---~~G~~l~~~~~~~lPi~yvt~ 316 (374)
T PRK14722 294 AS---NLGGVLDTVIRYKLPVHYVST 316 (374)
T ss_pred CC---CccHHHHHHHHHCcCeEEEec
Confidence 21 122356677777777665553
No 382
>PRK12289 GTPase RsgA; Reviewed
Probab=98.08 E-value=7.4e-06 Score=61.22 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 031083 18 LLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~~ 39 (166)
++|+|++|+|||||||.|.+..
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcc
Confidence 7999999999999999999754
No 383
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=3.8e-05 Score=59.11 Aligned_cols=134 Identities=22% Similarity=0.248 Sum_probs=85.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCC------------CC--CCccccceeEeEEEEEEE----------------CC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS------------FT--TSFITTIGIDFKIRTIEL----------------DG 61 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~------------~~--~~~~~~~~~~~~~~~~~~----------------~~ 61 (166)
.....++.++.....|||||-..|.... |. ....+..++.+.+.-+.. ++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 3455688899999999999999987521 11 111111122222221211 33
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccch
Q 031083 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPT 141 (166)
Q Consensus 62 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~ 141 (166)
..+.+.++|.||+..|++.....++-.|+.+.|+|+-+.--.+.-.-+.+.+.+ .+.-+++.||.|..--+.+.+.
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~ 171 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQ 171 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCH
Confidence 346788999999999999999999999999999998874333333334444543 3445677999996433455556
Q ss_pred HHHHHHHH
Q 031083 142 AKGQELAD 149 (166)
Q Consensus 142 ~~~~~~~~ 149 (166)
++.-+..+
T Consensus 172 EeLyqtf~ 179 (842)
T KOG0469|consen 172 EELYQTFQ 179 (842)
T ss_pred HHHHHHHH
Confidence 65544433
No 384
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.05 E-value=3.5e-05 Score=55.63 Aligned_cols=91 Identities=20% Similarity=0.177 Sum_probs=50.7
Q ss_pred EEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCccc-chHH
Q 031083 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAV-PTAK 143 (166)
Q Consensus 65 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~-~~~~ 143 (166)
-+.|.+|.|--+.+. ....-+|.++++.=..-.+..+-++.=+.++ --++|.||.|......-. ....
T Consensus 145 DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vINKaD~~~A~~a~r~l~~ 213 (323)
T COG1703 145 DVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVINKADRKGAEKAARELRS 213 (323)
T ss_pred CEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeEeccChhhHHHHHHHHHH
Confidence 367778887322221 2233478787777666566665555444444 357889999963221110 0111
Q ss_pred HHHHHH----H--hCCeEEEEecccCCCC
Q 031083 144 GQELAD----E--YGIKFFETVSMFNNEW 166 (166)
Q Consensus 144 ~~~~~~----~--~~~~~~~~Sa~~~~~v 166 (166)
+.++.. . +.-+++.+||.+|+++
T Consensus 214 al~~~~~~~~~~~W~ppv~~t~A~~g~Gi 242 (323)
T COG1703 214 ALDLLREVWRENGWRPPVVTTSALEGEGI 242 (323)
T ss_pred HHHhhcccccccCCCCceeEeeeccCCCH
Confidence 122221 1 1258999999999875
No 385
>PRK13796 GTPase YqeH; Provisional
Probab=98.03 E-value=1.5e-05 Score=60.10 Aligned_cols=73 Identities=23% Similarity=0.309 Sum_probs=47.4
Q ss_pred cccc-EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHH----HHHHHhCC---eEEE
Q 031083 86 RGAM-GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ----ELADEYGI---KFFE 157 (166)
Q Consensus 86 ~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~----~~~~~~~~---~~~~ 157 (166)
...+ .+++|+|+.+... .|...+.+... +.|+++|+||+|+... ....+++. .+++..++ .++.
T Consensus 67 ~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~~-~kpviLViNK~DLl~~--~~~~~~i~~~l~~~~k~~g~~~~~v~~ 138 (365)
T PRK13796 67 GDSDALVVNVVDIFDFNG-----SWIPGLHRFVG-NNPVLLVGNKADLLPK--SVKKNKVKNWLRQEAKELGLRPVDVVL 138 (365)
T ss_pred cccCcEEEEEEECccCCC-----chhHHHHHHhC-CCCEEEEEEchhhCCC--ccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence 4444 8999999987432 23334443333 5789999999999432 22233333 34566675 6899
Q ss_pred EecccCCCC
Q 031083 158 TVSMFNNEW 166 (166)
Q Consensus 158 ~Sa~~~~~v 166 (166)
+||++|.|+
T Consensus 139 vSAk~g~gI 147 (365)
T PRK13796 139 ISAQKGHGI 147 (365)
T ss_pred EECCCCCCH
Confidence 999999874
No 386
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.02 E-value=8.1e-06 Score=59.20 Aligned_cols=77 Identities=19% Similarity=0.077 Sum_probs=48.1
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEec
Q 031083 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
....++.+|++++|+|+.++.+.+.. .+...+ .+.|+++|.||+|+.+.. . ..+..+..++.+.+++.+||
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~-~--~~~~~~~~~~~~~~vi~iSa 85 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPA-V--TKQWLKYFEEKGIKALAINA 85 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHH-H--HHHHHHHHHHcCCeEEEEEC
Confidence 45567889999999999876553221 111111 156999999999983211 0 11112222334568899999
Q ss_pred ccCCCC
Q 031083 161 MFNNEW 166 (166)
Q Consensus 161 ~~~~~v 166 (166)
+++.++
T Consensus 86 ~~~~gi 91 (276)
T TIGR03596 86 KKGKGV 91 (276)
T ss_pred CCcccH
Confidence 998764
No 387
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=2.6e-05 Score=58.34 Aligned_cols=153 Identities=16% Similarity=0.082 Sum_probs=92.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcC-------------------------------CCCCCccccceeEeEEEEEE
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDD-------------------------------SFTTSFITTIGIDFKIRTIE 58 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 58 (166)
..+..+++++++|.-.+||||+-..+... ....+.....+.+.....+.
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 33567899999999999999976665331 00111111122223333333
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChh---hHHHH---HHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031083 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNI---RNWMRNIDQHAADNVNKILVGNKADM 132 (166)
Q Consensus 59 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~---~~~~~~~~~~~~~~~piivv~~K~Dl 132 (166)
. ...++++.|+||+..|.........++|.-++|+++...+ .|+.= +.- -.+... ......+++.||+|-
T Consensus 154 t--e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREh-a~Lakt-~gv~~lVv~vNKMdd 229 (501)
T KOG0459|consen 154 T--ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREH-AMLAKT-AGVKHLIVLINKMDD 229 (501)
T ss_pred e--cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHH-HHHHHh-hccceEEEEEEeccC
Confidence 3 3356889999999999888888888999999999975421 22221 111 111111 123468999999996
Q ss_pred CCCCccc-----chHHHHHHHHHhC------CeEEEEecccCCCC
Q 031083 133 DESKRAV-----PTAKGQELADEYG------IKFFETVSMFNNEW 166 (166)
Q Consensus 133 ~~~~~~~-----~~~~~~~~~~~~~------~~~~~~Sa~~~~~v 166 (166)
+..+... -.+....|.+..| ..|+.+|..+|.++
T Consensus 230 PtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~ 274 (501)
T KOG0459|consen 230 PTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANV 274 (501)
T ss_pred CccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccch
Confidence 4332221 1233444555444 57899999999874
No 388
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.99 E-value=9.7e-05 Score=49.72 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=45.3
Q ss_pred EEEEEEeCCCcccccccc----ccc--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 031083 64 IKLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~ 137 (166)
..+.+.|++|...+.... ..+ ....+.+++|++...... ...+...+.+... ...+|.||.|.....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~- 155 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARG- 155 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCc-
Confidence 347889999964322111 111 124889999999875432 2233333333322 356778999963322
Q ss_pred ccchHHHHHHHHHhCCeEE
Q 031083 138 AVPTAKGQELADEYGIKFF 156 (166)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~ 156 (166)
..+..++...++|+-
T Consensus 156 ----g~~~~~~~~~~~p~~ 170 (173)
T cd03115 156 ----GAALSIRAVTGKPIK 170 (173)
T ss_pred ----chhhhhHHHHCcCeE
Confidence 223446677776654
No 389
>PRK01889 GTPase RsgA; Reviewed
Probab=97.99 E-value=3.1e-05 Score=58.18 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=49.6
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccC
Q 031083 84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFN 163 (166)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (166)
...++|.+++|+++..+-....+..++-.... .+.+.+||+||+||.+. .....++...+ ..+.+++.+|+++|
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~-~~~~~~~~~~~--~~g~~Vi~vSa~~g 182 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCED-AEEKIAEVEAL--APGVPVLAVSALDG 182 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCC-HHHHHHHHHHh--CCCCcEEEEECCCC
Confidence 35789999999999754444445555444433 26678999999999432 11011222222 34679999999998
Q ss_pred CCC
Q 031083 164 NEW 166 (166)
Q Consensus 164 ~~v 166 (166)
+++
T Consensus 183 ~gl 185 (356)
T PRK01889 183 EGL 185 (356)
T ss_pred ccH
Confidence 874
No 390
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.99 E-value=3.8e-05 Score=41.55 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=29.0
Q ss_pred ccEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 031083 88 AMGILLVYDVTDESS--FNNIRNWMRNIDQHAADNVNKILVGNKAD 131 (166)
Q Consensus 88 ~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piivv~~K~D 131 (166)
.++++|++|.+.... .++-..++++++.... +.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 678999999998554 4454567888877765 789999999998
No 391
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.00014 Score=51.33 Aligned_cols=112 Identities=21% Similarity=0.346 Sum_probs=66.5
Q ss_pred eeeEEEEcCCCC--cHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeE----EEEEEEeCCCccccccccccccccc
Q 031083 15 LIKLLLIGDSGV--GKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR----IKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 15 ~~~i~v~G~~~~--GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
+.-++|+|-+|+ ||.+|+.+|....|.......... ....++++++- +.+.+.-.. +.+.--........
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~t--e~hgwtid~kyysadi~lcishic--de~~lpn~~~a~pl 79 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDAT--EFHGWTIDNKYYSADINLCISHIC--DEKFLPNAEIAEPL 79 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCce--eeeceEecceeeecceeEEeeccc--chhccCCcccccce
Confidence 456899999997 999999999987775443332221 22233333322 233322111 11111111222346
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl 132 (166)
.+++++||.+....+..+..|+....-+.. + -.+.++||.|.
T Consensus 80 ~a~vmvfdlse~s~l~alqdwl~htdinsf-d-illcignkvdr 121 (418)
T KOG4273|consen 80 QAFVMVFDLSEKSGLDALQDWLPHTDINSF-D-ILLCIGNKVDR 121 (418)
T ss_pred eeEEEEEeccchhhhHHHHhhccccccccc-h-hheeccccccc
Confidence 789999999999999999999875432222 2 25667888885
No 392
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.95 E-value=1.1e-05 Score=58.76 Aligned_cols=25 Identities=40% Similarity=0.487 Sum_probs=22.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSF 40 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~ 40 (166)
..++++|++|+|||||+|.|.+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 4699999999999999999998543
No 393
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.94 E-value=1.8e-05 Score=53.11 Aligned_cols=131 Identities=22% Similarity=0.312 Sum_probs=64.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeC-CCcc--------------------
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT-AGQE-------------------- 75 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~g~~-------------------- 75 (166)
||++.|++|+|||||++++...--.. ..+.. .++...+.-++.+.-+.+.|. .|..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~--Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVG--GFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEE--EEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCccc--eEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999988532100 11222 244444445666666666666 3311
Q ss_pred --cccccccccc----ccccEEEEEEECCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEeCC-CCCCCCcccchHHHHHH
Q 031083 76 --RFRTITTAYY----RGAMGILLVYDVTDESSFN-NIRNWMRNIDQHAADNVNKILVGNKA-DMDESKRAVPTAKGQEL 147 (166)
Q Consensus 76 --~~~~~~~~~~----~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~piivv~~K~-Dl~~~~~~~~~~~~~~~ 147 (166)
.+...-...+ ..+| ++++|---+ +| ....|.+.+......+.|++.+.-+. +. .-++++
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~~~---------~~l~~i 144 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKRSDN---------PFLEEI 144 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS--S---------CCHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecCCCc---------HHHHHH
Confidence 1111111112 2445 555562221 11 11234444444444567888877776 32 114667
Q ss_pred HHHhCCeEEEEecccC
Q 031083 148 ADEYGIKFFETVSMFN 163 (166)
Q Consensus 148 ~~~~~~~~~~~Sa~~~ 163 (166)
.+..+..+++++....
T Consensus 145 ~~~~~~~i~~vt~~NR 160 (168)
T PF03266_consen 145 KRRPDVKIFEVTEENR 160 (168)
T ss_dssp HTTTTSEEEE--TTTC
T ss_pred HhCCCcEEEEeChhHH
Confidence 7777777777765443
No 394
>PRK00098 GTPase RsgA; Reviewed
Probab=97.93 E-value=2.8e-05 Score=57.00 Aligned_cols=25 Identities=44% Similarity=0.489 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSF 40 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~ 40 (166)
..++++|++|+|||||+|.|.+...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 3589999999999999999987543
No 395
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.91 E-value=2.7e-05 Score=56.46 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
-.+++|.+|+|||||+|+|...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 5689999999999999999873
No 396
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.90 E-value=0.00016 Score=49.80 Aligned_cols=85 Identities=19% Similarity=0.134 Sum_probs=48.8
Q ss_pred EEEEEEeCCCccccccc----cccccc--cccEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031083 64 IKLQIWDTAGQERFRTI----TTAYYR--GAMGILLVYDVTDESS-FNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~ 136 (166)
+.++++||+|....... ...++. ..+-+++|.+++.... .+.+..++..+ + +--++.||.|- ..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~------~-~~~lIlTKlDe--t~ 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF------G-IDGLILTKLDE--TA 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS------S-TCEEEEESTTS--SS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc------c-CceEEEEeecC--CC
Confidence 45888999995543321 111221 4677999999886432 33222222222 2 23567999994 21
Q ss_pred cccchHHHHHHHHHhCCeEEEEec
Q 031083 137 RAVPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
. .-.+..++...+.|+-.++.
T Consensus 155 ~---~G~~l~~~~~~~~Pi~~it~ 175 (196)
T PF00448_consen 155 R---LGALLSLAYESGLPISYITT 175 (196)
T ss_dssp T---THHHHHHHHHHTSEEEEEES
T ss_pred C---cccceeHHHHhCCCeEEEEC
Confidence 1 23467788888888876664
No 397
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=0.00017 Score=56.40 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=70.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCC---CCccccceeEeE----------------EEEEEEC-----------CeE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFT---TSFITTIGIDFK----------------IRTIELD-----------GKR 63 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~----------------~~~~~~~-----------~~~ 63 (166)
..-.|+|+|++|+||||++..|...-.. .........+.+ ....... -..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 3467899999999999999888641000 000000000000 0000100 113
Q ss_pred EEEEEEeCCCcccccccccc---ccc--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcc
Q 031083 64 IKLQIWDTAGQERFRTITTA---YYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~ 138 (166)
+.++|+|++|.......... .+. .....++|++.+. +...+...+..+.. ..+.-+|+||.|- ..
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDE--t~-- 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDE--TG-- 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcC--cc--
Confidence 56889999995432221110 011 1224667777764 33344434443332 2357799999995 21
Q ss_pred cchHHHHHHHHHhCCeEEEEec
Q 031083 139 VPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
..-.+..+....++++..++.
T Consensus 499 -~lG~aLsv~~~~~LPI~yvt~ 519 (559)
T PRK12727 499 -RFGSALSVVVDHQMPITWVTD 519 (559)
T ss_pred -chhHHHHHHHHhCCCEEEEeC
Confidence 124566777777877766554
No 398
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=1.9e-05 Score=61.74 Aligned_cols=117 Identities=20% Similarity=0.169 Sum_probs=78.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC-----CCCCCc-----------cccceeEeEEEEEEECCeEEEEEEEeCCCcc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD-----SFTTSF-----------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~-----~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 75 (166)
-.+..+|.+...-.+||||+-++++.. ...... ....++..++.-....-.++++.++|||||-
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV 115 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCce
Confidence 356678889999999999999997641 111100 0111223333332222236889999999999
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031083 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132 (166)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl 132 (166)
.|--.....++-.|+.++++++...-.-+... .|.++.++ ++|.+...||+|.
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~t-V~rQ~~ry---~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTET-VWRQMKRY---NVPRICFINKMDR 168 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhHH-HHHHHHhc---CCCeEEEEehhhh
Confidence 98888888899999999999988643333333 33444332 7899999999996
No 399
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.90 E-value=1.4e-05 Score=58.31 Aligned_cols=87 Identities=22% Similarity=0.156 Sum_probs=52.3
Q ss_pred CCCccc-cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHH
Q 031083 71 TAGQER-FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD 149 (166)
Q Consensus 71 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~ 149 (166)
.|||.. -.......++.+|++++|+|+.++.+.+. .++.... . +.|+++|.||+|+.+. . ..++..++.+
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~-~--~~~~~~~~~~ 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADP-E--VTKKWIEYFE 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCH-H--HHHHHHHHHH
Confidence 456541 12234556788999999999987655322 1111221 1 5789999999998321 1 0112222223
Q ss_pred HhCCeEEEEecccCCCC
Q 031083 150 EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 150 ~~~~~~~~~Sa~~~~~v 166 (166)
+.+.+++.+||+++.++
T Consensus 78 ~~~~~vi~vSa~~~~gi 94 (287)
T PRK09563 78 EQGIKALAINAKKGQGV 94 (287)
T ss_pred HcCCeEEEEECCCcccH
Confidence 44678899999998763
No 400
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.88 E-value=3e-05 Score=59.53 Aligned_cols=54 Identities=20% Similarity=0.253 Sum_probs=37.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCC-CccccceeEeEEEEEEECCeEEEEEEEeCCC
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 73 (166)
.+.|.++|.|++||||+||.|.+.+-.. ...|..+-.++. +.+.. .+.+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQT--i~ls~---~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQT--IFLSP---SVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEE--EEcCC---CceecCCCC
Confidence 7999999999999999999999876532 333444433432 22222 356679999
No 401
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.84 E-value=0.00014 Score=51.69 Aligned_cols=91 Identities=23% Similarity=0.223 Sum_probs=60.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc-c-----c-ccccccccc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-F-----R-TITTAYYRG 87 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~-----~-~~~~~~~~~ 87 (166)
.-+|.++|.|.+||||++..|.+...+......++.........+++.+ +.+.|+||.-+ . + .......+.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK--iqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK--IQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc--eeeecCcchhcccccCCCCccEEEEEeec
Confidence 4589999999999999999999865544333333333344445566644 67779998321 1 1 112334467
Q ss_pred ccEEEEEEECCChhhHHHHH
Q 031083 88 AMGILLVYDVTDESSFNNIR 107 (166)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~ 107 (166)
|..+++|.|+-.|-+...+.
T Consensus 137 cnli~~vld~~kp~~hk~~i 156 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKII 156 (358)
T ss_pred ccEEEEEeeccCcccHHHHH
Confidence 99999999999887765543
No 402
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.80 E-value=0.0002 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
.=.++.|.-|||||||++++...
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 44678899999999999999853
No 403
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=6.5e-06 Score=59.50 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=87.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcC---CCCCCccccceeEeEEEE---EEE------------------------
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDD---SFTTSFITTIGIDFKIRT---IEL------------------------ 59 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~---~~~~~~~~~~~~~~~~~~---~~~------------------------ 59 (166)
-+++-.++|.-+|....||||+++.+.+- .|..+-....++...+.. +..
T Consensus 33 isRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c 112 (466)
T KOG0466|consen 33 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPC 112 (466)
T ss_pred hhheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCc
Confidence 44677899999999999999999998662 111111111111110000 000
Q ss_pred -----CC--e-EEEEEEEeCCCccccccccccccccccEEEEEEECCC----hhhHHHHHHHHHHHHHhcCCCCcEEEEE
Q 031083 60 -----DG--K-RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWMRNIDQHAADNVNKILVG 127 (166)
Q Consensus 60 -----~~--~-~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~piivv~ 127 (166)
.+ + ...+.|.|+||++-.....-....-.|+.++++..+. |++.+.+... ++.+ -..++++-
T Consensus 113 ~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav--eiM~----LkhiiilQ 186 (466)
T KOG0466|consen 113 DRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV--EIMK----LKHIIILQ 186 (466)
T ss_pred ccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH--HHhh----hceEEEEe
Confidence 00 0 0236678999987655544444445788888888765 4555554321 1111 12489999
Q ss_pred eCCCCCCCCc-ccchHHHHHHHHHh---CCeEEEEecccCCC
Q 031083 128 NKADMDESKR-AVPTAKGQELADEY---GIKFFETVSMFNNE 165 (166)
Q Consensus 128 ~K~Dl~~~~~-~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~ 165 (166)
||+||..+.. ....++++.|.+.- +.|++.+||.-+-|
T Consensus 187 NKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyN 228 (466)
T KOG0466|consen 187 NKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYN 228 (466)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccC
Confidence 9999944332 23455666666644 46999999876544
No 404
>PRK13695 putative NTPase; Provisional
Probab=97.77 E-value=0.00046 Score=46.52 Aligned_cols=22 Identities=36% Similarity=0.768 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
++|++.|++|+|||||++.+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998654
No 405
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.75 E-value=0.00021 Score=51.95 Aligned_cols=82 Identities=11% Similarity=0.116 Sum_probs=55.8
Q ss_pred ccccccccccEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEE
Q 031083 80 ITTAYYRGAMGILLVYDVTDESS-FNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFET 158 (166)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (166)
+...-..+.|-.++++++.+|+- ...+.+++-.. .. .++.-+||+||+||.++..... ++.+.+...+|.+.+.+
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a-e~--~gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLA-EA--GGIEPVIVLNKIDLLDDEEAAV-KELLREYEDIGYPVLFV 147 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHH-HH--cCCcEEEEEEccccCcchHHHH-HHHHHHHHhCCeeEEEe
Confidence 33444556888999999998775 33444333332 22 2566777899999955433322 56777888899999999
Q ss_pred ecccCCC
Q 031083 159 VSMFNNE 165 (166)
Q Consensus 159 Sa~~~~~ 165 (166)
|++++++
T Consensus 148 s~~~~~~ 154 (301)
T COG1162 148 SAKNGDG 154 (301)
T ss_pred cCcCccc
Confidence 9998865
No 406
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00013 Score=55.13 Aligned_cols=135 Identities=19% Similarity=0.198 Sum_probs=71.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCC---------CCC------------ccccceeEeEEEE--------E-EEC-CeE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSF---------TTS------------FITTIGIDFKIRT--------I-ELD-GKR 63 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~---------~~~------------~~~~~~~~~~~~~--------~-~~~-~~~ 63 (166)
...|+++|++|+||||++..|...-. ... +....++.+.... + ... ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 35799999999999999999963110 000 0000011111000 0 001 012
Q ss_pred EEEEEEeCCCccccccc----ccccc--ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 031083 64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~ 137 (166)
+.++|.|++|....... ...++ ...+.++||+|++... ..+......+.. --.--+|.||.|- ...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~----~~idglI~TKLDE--T~k 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDE--TAS 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC----CCCCEEEEEcccC--CCC
Confidence 46889999996432221 11222 1346788999876422 233333333332 1234678999995 221
Q ss_pred ccchHHHHHHHHHhCCeEEEEec
Q 031083 138 AVPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
.-.+..++...++|+..++.
T Consensus 393 ---~G~iLni~~~~~lPIsyit~ 412 (436)
T PRK11889 393 ---SGELLKIPAVSSAPIVLMTD 412 (436)
T ss_pred ---ccHHHHHHHHHCcCEEEEeC
Confidence 22357778888888766553
No 407
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.72 E-value=0.00074 Score=43.85 Aligned_cols=105 Identities=16% Similarity=0.192 Sum_probs=60.7
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCC
Q 031083 20 LIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD 99 (166)
Q Consensus 20 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 99 (166)
.-|.+|+|||++--.+...-.... ....-.+.. .....-.+.++++|+|+.. .......+..+|.++++.+.+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLG-KRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence 456889999998776643111000 000000000 0001111668999999743 2223466888999999988764
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031083 100 ESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132 (166)
Q Consensus 100 ~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl 132 (166)
.++..+...++.+.+.. ...++.+|.|+.+-
T Consensus 79 -~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 79 -TSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred -hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 45555555555554433 35578899999984
No 408
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.0008 Score=51.54 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-.++++|+.|+||||++..|.+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998765
No 409
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.60 E-value=0.0015 Score=48.42 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=39.8
Q ss_pred cccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC--CeEEEEec
Q 031083 87 GAMGILLVYDVTDESSFNN--IRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFFETVS 160 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa 160 (166)
..|+++-|+|+..-..... ......++. .-=+|++||.|+.+.. . .+..+...++++ ++++.+|.
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dlv~~~-~--l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDLVDAE-E--LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccCCCHH-H--HHHHHHHHHHhCCCCeEEEccc
Confidence 4788999999887433221 223344442 2357889999995543 1 344556666665 57777665
No 410
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.60 E-value=0.0004 Score=52.43 Aligned_cols=130 Identities=17% Similarity=0.215 Sum_probs=68.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCC---CCCccccceeEeEEE-----------------EEE------------ECCe
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSF---TTSFITTIGIDFKIR-----------------TIE------------LDGK 62 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~------------~~~~ 62 (166)
.-.|.++||.|+||||-+-.|..... ........+.+.+.. .+. ..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~- 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD- 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc-
Confidence 56799999999999998887764322 111111112222100 000 022
Q ss_pred EEEEEEEeCCCccccccccc----ccccc--ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031083 63 RIKLQIWDTAGQERFRTITT----AYYRG--AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136 (166)
Q Consensus 63 ~~~~~i~D~~g~~~~~~~~~----~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~ 136 (166)
+.+++.||.|...+..... .++.. ..-+-||++++. ..+.+...++.+.... .--++.||.|= ..
T Consensus 282 -~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~~----i~~~I~TKlDE--T~ 352 (407)
T COG1419 282 -CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLFP----IDGLIFTKLDE--TT 352 (407)
T ss_pred -CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccCC----cceeEEEcccc--cC
Confidence 3478889999766554332 22222 234667777774 3446666666654321 22577899993 21
Q ss_pred cccchHHHHHHHHHhCCeEEE
Q 031083 137 RAVPTAKGQELADEYGIKFFE 157 (166)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~ 157 (166)
. .-....+..+.+.|+-.
T Consensus 353 s---~G~~~s~~~e~~~PV~Y 370 (407)
T COG1419 353 S---LGNLFSLMYETRLPVSY 370 (407)
T ss_pred c---hhHHHHHHHHhCCCeEE
Confidence 1 22234455555555443
No 411
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.59 E-value=0.00045 Score=44.39 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=21.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
...+++.|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998754
No 412
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.58 E-value=0.00074 Score=51.97 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=48.7
Q ss_pred EEEEEEeCCCcccccc----ccccccc---cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031083 64 IKLQIWDTAGQERFRT----ITTAYYR---GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~----~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~ 136 (166)
+.++++|++|...... ....++. .-.-+.+|++++.. ...+...+..+... . +--+|.||.|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence 4688999999643321 1222222 22356788887642 22333333333211 1 2368899999521
Q ss_pred cccchHHHHHHHHHhCCeEEEEec
Q 031083 137 RAVPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
..-.+..+....++++..++.
T Consensus 372 ---~~G~i~~~~~~~~lPv~yit~ 392 (424)
T PRK05703 372 ---SLGSILSLLIESGLPISYLTN 392 (424)
T ss_pred ---cccHHHHHHHHHCCCEEEEeC
Confidence 123477888888888776654
No 413
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.57 E-value=7e-05 Score=55.95 Aligned_cols=57 Identities=21% Similarity=0.391 Sum_probs=41.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeEEEEEEEeCCC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 73 (166)
-...+++.|+|.|++||||+||.|..... .....++ .+.....+..+. .+.+.|.||
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pG--vT~smqeV~Ldk---~i~llDsPg 306 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPG--VTRSMQEVKLDK---KIRLLDSPG 306 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCcc--chhhhhheeccC---CceeccCCc
Confidence 35679999999999999999999998655 3333333 334445555443 577889999
No 414
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.56 E-value=0.00024 Score=54.67 Aligned_cols=85 Identities=18% Similarity=0.097 Sum_probs=48.6
Q ss_pred EEEEEeCCCcccccccc------ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcc
Q 031083 65 KLQIWDTAGQERFRTIT------TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (166)
Q Consensus 65 ~~~i~D~~g~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~ 138 (166)
.+++.||+|........ .......|.+++|+|++... .+........... + ..-+|.||.|-.. +.
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l--~-i~gvIlTKlD~~a--~~ 248 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV--G-IGGIIITKLDGTA--KG 248 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC--C-CCEEEEecccCCC--cc
Confidence 57899999965433211 11133578899999987642 2222222222111 1 2467889999622 11
Q ss_pred cchHHHHHHHHHhCCeEEEEec
Q 031083 139 VPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
=-+..++...+.|+..++.
T Consensus 249 ---G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 249 ---GGALSAVAETGAPIKFIGT 267 (437)
T ss_pred ---cHHHHHHHHHCcCEEEEec
Confidence 2256777778887776654
No 415
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.56 E-value=0.00021 Score=51.91 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=37.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC------CCCccccceeEeEEEEEEECCeEEEEEEEeCCC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 73 (166)
.+.++++.|+|.|++|||||||.+..... .....+..+..+. ..+.+.+.. .+.+.||||
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~-~~iri~~rp-~vy~iDTPG 205 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVS-ERIRISHRP-PVYLIDTPG 205 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeeh-hheEeccCC-ceEEecCCC
Confidence 56789999999999999999999875322 2222233232222 113333222 366779999
No 416
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.56 E-value=7.5e-05 Score=47.09 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999873
No 417
>PRK08118 topology modulation protein; Reviewed
Probab=97.56 E-value=7.3e-05 Score=50.18 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
.+|+|+|++|||||||.+.+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999863
No 418
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.55 E-value=0.00053 Score=42.06 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=49.1
Q ss_pred EEEEc-CCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 031083 18 LLLIG-DSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (166)
Q Consensus 18 i~v~G-~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 96 (166)
|.+.| .+|+||||+...+...-.. ...+..-. ..+ ..+.+.++|+|+..... ....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~-------d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLI-------DLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEE-------eCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56677 5689999988776542211 11111111 111 11568899999864322 2366778999999887
Q ss_pred CCChhhHHHHHHHHH
Q 031083 97 VTDESSFNNIRNWMR 111 (166)
Q Consensus 97 ~~~~~s~~~~~~~~~ 111 (166)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 64 456666666655
No 419
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.52 E-value=8.1e-05 Score=50.45 Aligned_cols=23 Identities=30% Similarity=0.719 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
.||+|+|+|||||||+.+.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
No 420
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.52 E-value=0.0027 Score=48.87 Aligned_cols=86 Identities=20% Similarity=0.115 Sum_probs=50.2
Q ss_pred EEEEEEeCCCcccccccccc------ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 031083 64 IKLQIWDTAGQERFRTITTA------YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~ 137 (166)
+.+++.||+|.......... ..-..+.+++|+|+... +.+..+...+.... + ..-+|.||.|-.. .
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--~-i~giIlTKlD~~~--~ 254 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--G-LTGVVLTKLDGDA--R 254 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--C-CCEEEEeCccCcc--c
Confidence 45889999995433221111 12246788999998753 23333333333222 2 2467799999521 1
Q ss_pred ccchHHHHHHHHHhCCeEEEEec
Q 031083 138 AVPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
. -.+..++...++|+..+..
T Consensus 255 ~---G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 255 G---GAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred c---cHHHHHHHHHCcCEEEEeC
Confidence 1 1267888888888876654
No 421
>PRK07261 topology modulation protein; Provisional
Probab=97.50 E-value=9.5e-05 Score=49.82 Aligned_cols=22 Identities=45% Similarity=0.659 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
+|+|+|++|+|||||.+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998653
No 422
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.49 E-value=0.00017 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
++-.+|+||.||||||+.+.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 46789999999999999999864
No 423
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.49 E-value=9.6e-05 Score=47.96 Aligned_cols=20 Identities=40% Similarity=0.682 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031083 18 LLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~ 37 (166)
|+++|++||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999985
No 424
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.49 E-value=0.00014 Score=40.32 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
..+|.|+.|+|||||+..+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 425
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.48 E-value=0.0012 Score=39.46 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=46.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccc-cccccccccEEEEEEE
Q 031083 18 LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-TTAYYRGAMGILLVYD 96 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d 96 (166)
+++.|.+|+|||++...+...-.... . +...++ .+.+.|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-K---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-C---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 67889999999999988875321111 0 111112 5788899986432221 1344557888888888
Q ss_pred CCChhhHHHHHHH
Q 031083 97 VTDESSFNNIRNW 109 (166)
Q Consensus 97 ~~~~~s~~~~~~~ 109 (166)
.... +.......
T Consensus 68 ~~~~-~~~~~~~~ 79 (99)
T cd01983 68 PEAL-AVLGARRL 79 (99)
T ss_pred Cchh-hHHHHHHH
Confidence 6653 33444333
No 426
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.00068 Score=51.15 Aligned_cols=86 Identities=10% Similarity=0.099 Sum_probs=47.0
Q ss_pred EEEEEEeCCCcccccccc----ccccc--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 031083 64 IKLQIWDTAGQERFRTIT----TAYYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~ 137 (166)
+.+++.||+|........ ..+.. ..+.+++|.+... ....+...+.... .--+--+|.||.|- ...
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~----~l~i~glI~TKLDE--T~~ 357 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA----EIPIDGFIITKMDE--TTR 357 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC----cCCCCEEEEEcccC--CCC
Confidence 568899999975433211 11222 3356677776532 2333333333321 11234677999995 211
Q ss_pred ccchHHHHHHHHHhCCeEEEEec
Q 031083 138 AVPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
.=.+..++...++|+..++.
T Consensus 358 ---~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 358 ---IGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred ---ccHHHHHHHHHCCCEEEEec
Confidence 22357778888888776664
No 427
>PRK10867 signal recognition particle protein; Provisional
Probab=97.45 E-value=0.003 Score=48.72 Aligned_cols=86 Identities=17% Similarity=0.088 Sum_probs=48.2
Q ss_pred EEEEEEeCCCcccccccccc----c--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 031083 64 IKLQIWDTAGQERFRTITTA----Y--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~ 137 (166)
+.+++.||+|.-........ + .-..+.+++|.|+.... .+......+.+.. + ..-+|.||.|- ...
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~--~~r 255 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDG--DAR 255 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccC--ccc
Confidence 45889999995432221111 1 11456789999987532 2222233332211 1 24677899995 211
Q ss_pred ccchHHHHHHHHHhCCeEEEEec
Q 031083 138 AVPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
. -.+..++...++|+.+++.
T Consensus 256 g---G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 256 G---GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred c---cHHHHHHHHHCcCEEEEeC
Confidence 1 1267788888888776654
No 428
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00013 Score=50.53 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++||+|||||||++.+-.-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 58899999999999999997644
No 429
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.42 E-value=0.00096 Score=41.25 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=58.8
Q ss_pred EEEEc-CCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 031083 18 LLLIG-DSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (166)
Q Consensus 18 i~v~G-~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 96 (166)
|+++| .+|+||||+.-.|-..-.........-.+.. .+... .+.+.|+|+.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~~~-D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQFGD-DYVVVDLGRSLDE--VSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCCCC-CEEEEeCCCCcCH--HHHHHHHHcCeEEEEec
Confidence 34444 6679999987776542111101111111111 11011 5788899985432 23446678999998887
Q ss_pred CCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEeC
Q 031083 97 VTDESSFNNIRNWMRNIDQHAAD-NVNKILVGNK 129 (166)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~-~~piivv~~K 129 (166)
.+ ..+...+..+.+.+.+.... ...+.+|+|+
T Consensus 74 ~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 55 45667777777777664433 4567787775
No 430
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.41 E-value=0.00061 Score=49.61 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=60.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc----------------
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------------- 76 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------------- 76 (166)
.+..+++++|+++.|||+++++|..... +..+... ..+.+.....|..+.
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDEDA-------------ERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCCC-------------ccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 4446799999999999999999997543 2222111 112333334443111
Q ss_pred --------cccccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCC
Q 031083 77 --------FRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAA-DNVNKILVGNKAD 131 (166)
Q Consensus 77 --------~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~piivv~~K~D 131 (166)
........++.+..=++++|--. .-+...-+..++.++...+ -++|++.+||+--
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 11122345667788888888443 1223333444555544333 3789999998643
No 431
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.41 E-value=0.014 Score=39.14 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=86.7
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
-+......|+++|..+.++..|.+.+..... ++..+....+. .. .|. +.. ..-...|
T Consensus 10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~----------~~~l~Vh~a~s--LP-----Lp~--e~~----~lRprID 66 (176)
T PF11111_consen 10 LPELNTATILLVGTEEALLQQLAEAMLEEDK----------EFKLKVHLAKS--LP-----LPS--ENN----NLRPRID 66 (176)
T ss_pred CCCcceeEEEEecccHHHHHHHHHHHHhhcc----------ceeEEEEEecc--CC-----Ccc--ccc----CCCceeE
Confidence 3445578999999999999999999986321 11111111100 01 111 111 1123589
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEeccc
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMF 162 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (166)
.|+|++|.....|+..++.-+..+...... -.+.+++|-... ++...+...++.+++..+++++..+-=..
T Consensus 67 lIVFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~-~~~~sv~~~~V~kla~~y~~plL~~~le~ 137 (176)
T PF11111_consen 67 LIVFVINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGR-ESHCSVHPNEVRKLAATYNSPLLFADLEN 137 (176)
T ss_pred EEEEEEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCc-ccccccCHHHHHHHHHHhCCCEEEeeccc
Confidence 999999999999999988777666443332 258888888886 66677889999999999999988765443
No 432
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.40 E-value=0.00011 Score=48.91 Aligned_cols=22 Identities=18% Similarity=0.511 Sum_probs=17.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999864
No 433
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.00016 Score=50.95 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-|.++|++|||||||++.+.+-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998743
No 434
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.37 E-value=0.00017 Score=50.43 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-++++|++|||||||++.+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999998744
No 435
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.0044 Score=50.82 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=69.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCC-C--ccccceeEeEE----------------EEEEE-----------CCeEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTT-S--FITTIGIDFKI----------------RTIEL-----------DGKRIK 65 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~-~--~~~~~~~~~~~----------------~~~~~-----------~~~~~~ 65 (166)
--|+++|+.|+||||.+..|....... . .....+.+.+. ..... .-....
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 368999999999999999987532100 0 00000111110 00000 001235
Q ss_pred EEEEeCCCcccccccc----ccc--cccccEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcc
Q 031083 66 LQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTD-ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (166)
Q Consensus 66 ~~i~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~ 138 (166)
++|+||+|....+... ... ...-+-+++|.|++. .+.+.++ .+.+......+ +--+|.||.|- ...
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~~~-i~glIlTKLDE--t~~- 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGAGED-VDGCIITKLDE--ATH- 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcccCC-CCEEEEeccCC--CCC-
Confidence 8899999943322111 111 123456889999885 2333333 33332211111 34677999995 211
Q ss_pred cchHHHHHHHHHhCCeEEEEec
Q 031083 139 VPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
.=.+..+....++|+..++.
T Consensus 339 --~G~iL~i~~~~~lPI~yit~ 358 (767)
T PRK14723 339 --LGPALDTVIRHRLPVHYVST 358 (767)
T ss_pred --ccHHHHHHHHHCCCeEEEec
Confidence 22356677777777766554
No 436
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.35 E-value=0.0023 Score=46.32 Aligned_cols=133 Identities=18% Similarity=0.185 Sum_probs=70.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCC---------C------------CccccceeEeEEEEEEE-----------CCeE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFT---------T------------SFITTIGIDFKIRTIEL-----------DGKR 63 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~---------~------------~~~~~~~~~~~~~~~~~-----------~~~~ 63 (166)
-+++++|++|+||||++..+...-.. . .+....+.++... ... ....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence 58999999999999999887542100 0 0000011111100 000 1113
Q ss_pred EEEEEEeCCCccccccc----cccccc--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 031083 64 IKLQIWDTAGQERFRTI----TTAYYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~ 137 (166)
+.+.+.|++|....+.. +..++. ..+-++||.|++... +.+..+...+.. -.+--++.||.|- ...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDe--t~~ 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDE--TAS 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecC--CCC
Confidence 56889999996543221 111221 345689999987421 233333333321 1235678999995 222
Q ss_pred ccchHHHHHHHHHhCCeEEEEec
Q 031083 138 AVPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
.-.+..++...+.|+..++.
T Consensus 227 ---~G~~l~~~~~~~~Pi~~it~ 246 (270)
T PRK06731 227 ---SGELLKIPAVSSAPIVLMTD 246 (270)
T ss_pred ---ccHHHHHHHHHCcCEEEEeC
Confidence 22356777788887766553
No 437
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.32 E-value=0.0036 Score=48.86 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
--++++|+.|+||||++..|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 4689999999999999999875
No 438
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0053 Score=46.70 Aligned_cols=85 Identities=13% Similarity=0.067 Sum_probs=46.2
Q ss_pred EEEEEEeCCCcccccc----cccccccc---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031083 64 IKLQIWDTAGQERFRT----ITTAYYRG---AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~ 136 (166)
+.+++.|++|...... ....++.. -+-.++|.|++.. ...+...+..... --+--++.||.|- ..
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~----~~~~~~I~TKlDe--t~ 326 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP----FSYKTVIFTKLDE--TT 326 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC----CCCCEEEEEeccC--CC
Confidence 4688999999543221 11122222 2258899999874 2344444433321 1134677899994 21
Q ss_pred cccchHHHHHHHHHhCCeEEEEe
Q 031083 137 RAVPTAKGQELADEYGIKFFETV 159 (166)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~S 159 (166)
. .=.+..++...++|+..++
T Consensus 327 ~---~G~~l~~~~~~~~Pi~yit 346 (388)
T PRK12723 327 C---VGNLISLIYEMRKEVSYVT 346 (388)
T ss_pred c---chHHHHHHHHHCCCEEEEe
Confidence 1 1224566666777665544
No 439
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.30 E-value=0.00025 Score=45.74 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999998854
No 440
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.29 E-value=0.00028 Score=40.08 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031083 18 LLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~ 38 (166)
|.+.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999864
No 441
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.26 E-value=0.0029 Score=42.75 Aligned_cols=85 Identities=21% Similarity=0.214 Sum_probs=58.9
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchH
Q 031083 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTA 142 (166)
Q Consensus 63 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~ 142 (166)
.+.++++|+|+.... .....+..+|.++++...+. .+...+..+++.+.+. +.|+.+|+||.|... ...+
T Consensus 92 ~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~----~~~~ 161 (179)
T cd03110 92 GAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND----EIAE 161 (179)
T ss_pred CCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc----chHH
Confidence 467899999975422 22345678999999998774 4555666666655432 467899999999622 1345
Q ss_pred HHHHHHHHhCCeEEE
Q 031083 143 KGQELADEYGIKFFE 157 (166)
Q Consensus 143 ~~~~~~~~~~~~~~~ 157 (166)
+++++.++.+++++-
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 678888888887653
No 442
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.24 E-value=0.0003 Score=45.84 Aligned_cols=22 Identities=18% Similarity=0.486 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
.|.|+|+.++|||||++.|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 443
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.24 E-value=0.00039 Score=48.29 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=23.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
.+....-|+|+|++|+|||||++.|...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3445567889999999999999999753
No 444
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.22 E-value=0.00031 Score=44.69 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 031083 18 LLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~~ 39 (166)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998743
No 445
>PRK06217 hypothetical protein; Validated
Probab=97.21 E-value=0.00033 Score=47.67 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
.+|+|+|.+|||||||.+.|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 446
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.21 E-value=0.00036 Score=47.63 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
.++|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999764
No 447
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.20 E-value=0.00032 Score=44.45 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031083 18 LLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~ 38 (166)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999764
No 448
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.19 E-value=0.00037 Score=45.20 Aligned_cols=21 Identities=52% Similarity=0.830 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031083 18 LLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~ 38 (166)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 449
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.19 E-value=0.0013 Score=42.31 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
--|++.|+.|+|||||++.+...-
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998753
No 450
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.00011 Score=52.03 Aligned_cols=88 Identities=15% Similarity=0.264 Sum_probs=53.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECC-eEEEEEEEeCCCcccccccc-----cccc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTIT-----TAYY 85 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~-----~~~~ 85 (166)
......|++.|..+ +|++|++.+...-. ...++...+|....-.-.+ ..-.-.+|+++|......+. ...+
T Consensus 42 ~~~E~~I~~~Gn~~--~tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l 118 (363)
T KOG3929|consen 42 EKFEFFIGSKGNGG--KTTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL 118 (363)
T ss_pred ccceeEEEEecCCc--eeEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence 34567888888776 59999998875432 2344555555544433222 22235789999866544432 2233
Q ss_pred ccccEEEEEEECCChhhH
Q 031083 86 RGAMGILLVYDVTDESSF 103 (166)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~ 103 (166)
+.+ .+|++.|+++++.+
T Consensus 119 ~~~-slIL~LDls~p~~~ 135 (363)
T KOG3929|consen 119 RTF-SLILVLDLSKPNDL 135 (363)
T ss_pred hhh-hheeeeecCChHHH
Confidence 333 37889999997653
No 451
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.18 E-value=0.00041 Score=44.21 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=22.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFT 41 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~ 41 (166)
-.++++|++|+|||++++.+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 47899999999999999999875543
No 452
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.18 E-value=0.00021 Score=50.04 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=36.2
Q ss_pred EEEEEeCCCcccccc----cc--ccccccccEEEEEEE------CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031083 65 KLQIWDTAGQERFRT----IT--TAYYRGAMGILLVYD------VTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132 (166)
Q Consensus 65 ~~~i~D~~g~~~~~~----~~--~~~~~~~d~~i~v~d------~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl 132 (166)
...++|+|||-++-. ++ ..+++..+.-+.++. +++|..|- ..++-.+.-......|-+=|..|+|+
T Consensus 98 ~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~i--S~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 98 HYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFI--SSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHH--HHHHHHHHHHHhhcccchhhhhHhHH
Confidence 467889999765311 11 222333444333333 44555543 33334443333346778888999998
Q ss_pred C
Q 031083 133 D 133 (166)
Q Consensus 133 ~ 133 (166)
.
T Consensus 176 ~ 176 (290)
T KOG1533|consen 176 L 176 (290)
T ss_pred H
Confidence 4
No 453
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.18 E-value=0.00053 Score=47.62 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
+...-|+|.|++|||||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999999975
No 454
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.16 E-value=0.00037 Score=47.14 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
.++|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 455
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.00029 Score=47.58 Aligned_cols=24 Identities=42% Similarity=0.667 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.=+++.||+|+|||||++.|....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999866
No 456
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.16 E-value=0.0034 Score=48.48 Aligned_cols=49 Identities=24% Similarity=0.372 Sum_probs=33.0
Q ss_pred cccccccccccEEEEEEECCChh---hHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 031083 79 TITTAYYRGAMGILLVYDVTDES---SFNNIRNWMRNIDQHAADNVNKILVGNKAD 131 (166)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~piivv~~K~D 131 (166)
.+...+|++++.+|| | .|. +..++..++..+.+.......|+++-.|.+
T Consensus 150 EIlKaLyr~a~iLIL--D--EPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 150 EILKALYRGARLLIL--D--EPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHHHhcCCCEEEE--c--CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 345666778887776 3 232 346677777777766666777888877765
No 457
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.16 E-value=0.00049 Score=45.74 Aligned_cols=50 Identities=18% Similarity=0.419 Sum_probs=31.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccc
Q 031083 18 LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 78 (166)
+.++|..+||||||+.++...-... .+....+.-.+...+ .|++|.+.|+
T Consensus 5 l~ivG~k~SGKTTLie~lv~~L~~~--------G~rVa~iKH~hh~~~---~D~~GkDs~r 54 (161)
T COG1763 5 LGIVGYKNSGKTTLIEKLVRKLKAR--------GYRVATVKHAHHDFD---LDKPGKDTYR 54 (161)
T ss_pred EEEEecCCCChhhHHHHHHHHHHhC--------CcEEEEEEecCCCCC---CCCCCCccch
Confidence 6799999999999999997632111 123333444333323 3888876553
No 458
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.13 E-value=0.00045 Score=46.71 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
-|+++|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4799999999999999999874
No 459
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.12 E-value=0.00046 Score=42.65 Aligned_cols=21 Identities=43% Similarity=0.776 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHh
Q 031083 16 IKLLLIGDSGVGKSCLLLRFS 36 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~ 36 (166)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457999999999999999986
No 460
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.00043 Score=51.37 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 031083 18 LLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~~ 39 (166)
++++||+|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998743
No 461
>PRK14530 adenylate kinase; Provisional
Probab=97.11 E-value=0.00047 Score=48.17 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
.+|+|+|++||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
No 462
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.10 E-value=0.00054 Score=48.53 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=23.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
-+..++++|+|++|||||+|+..++..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 345689999999999999999998863
No 463
>PRK03839 putative kinase; Provisional
Probab=97.07 E-value=0.00054 Score=46.41 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
+|+++|++|+||||+.+.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 464
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.07 E-value=0.00075 Score=46.87 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.....|+|.|++|||||||.+.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568899999999999999999875
No 465
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.07 E-value=0.00059 Score=46.58 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.-.++++|++|+|||||++.+.+--
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4579999999999999999988743
No 466
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.06 E-value=0.00061 Score=44.08 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 467
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.06 E-value=0.00054 Score=48.94 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
-++++||.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999999987
No 468
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.06 E-value=0.00052 Score=47.23 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031083 18 LLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~ 37 (166)
|.|.|++|||||||.+.+.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999976
No 469
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.06 E-value=0.0006 Score=46.15 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-.++++|+.|+|||||++.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 34789999999999999998863
No 470
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.0021 Score=48.26 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=29.9
Q ss_pred EEEEEEEeCCCccccc-cccccc-----cccccEEEEEEECCChhhHHHHHHHHH
Q 031083 63 RIKLQIWDTAGQERFR-TITTAY-----YRGAMGILLVYDVTDESSFNNIRNWMR 111 (166)
Q Consensus 63 ~~~~~i~D~~g~~~~~-~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~ 111 (166)
.+.++|.||+|.-..+ ++.... .-.-|-+|||.|++-....+.....++
T Consensus 183 ~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk 237 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFK 237 (483)
T ss_pred CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHH
Confidence 4668899999943222 222211 123678999999998666554444443
No 471
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.00054 Score=44.70 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
....||+|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 5678999999999999999999974
No 472
>PRK14531 adenylate kinase; Provisional
Probab=97.04 E-value=0.00064 Score=46.26 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
+.+|+++|+|||||||+.+.+..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999865
No 473
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.03 E-value=0.019 Score=38.55 Aligned_cols=83 Identities=12% Similarity=-0.010 Sum_probs=49.4
Q ss_pred EEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHH
Q 031083 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKG 144 (166)
Q Consensus 65 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~ 144 (166)
.++++|+|+.... .....+..+|.++++.+.+. .+...+..+++.+.... .....+|.|+.+.... ...+..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~---~~~~~~ 135 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMV---EGGDMV 135 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCccccc---chhhHH
Confidence 5889999975432 23344678999999888664 45555555555554421 2357789999986221 111113
Q ss_pred HHHHHHhCCeE
Q 031083 145 QELADEYGIKF 155 (166)
Q Consensus 145 ~~~~~~~~~~~ 155 (166)
+.+.+.++.++
T Consensus 136 ~~~~~~~~~~v 146 (179)
T cd02036 136 EDIEEILGVPL 146 (179)
T ss_pred HHHHHHhCCCE
Confidence 44555556544
No 474
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.03 E-value=0.00061 Score=46.29 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHh
Q 031083 16 IKLLLIGDSGVGKSCLLLRFS 36 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~ 36 (166)
.-|+++|++||||||+++.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368899999999999999997
No 475
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.02 E-value=0.00064 Score=46.46 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
=|+|+|++|+|||||+++|...
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3899999999999999999874
No 476
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.02 E-value=0.00068 Score=45.96 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
=.++++|+.|+|||||++.+.+-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 368999999999999999998854
No 477
>PRK14532 adenylate kinase; Provisional
Probab=97.01 E-value=0.00066 Score=46.31 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
+|+++|++||||||+.+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999975
No 478
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.01 E-value=0.00059 Score=50.99 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
...+|+|.|++|||||||++.+.+.-
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHccc
Confidence 46889999999999999999998753
No 479
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.01 E-value=0.00071 Score=45.84 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
=.+.|+|++|+|||||+|-+.+=.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhcc
Confidence 368999999999999999987733
No 480
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.00 E-value=0.00073 Score=47.19 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57999999999999999998753
No 481
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.00 E-value=0.00065 Score=46.88 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 031083 18 LLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~~ 39 (166)
|+|.|++||||||+++.+...-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987643
No 482
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.00057 Score=47.36 Aligned_cols=21 Identities=48% Similarity=0.575 Sum_probs=18.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
-.+++||+|||||||++.+-.
T Consensus 35 VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHh
Confidence 358999999999999998854
No 483
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.00 E-value=0.00068 Score=45.67 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
.-+.|+|++|||||||++++...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 46899999999999999999863
No 484
>PRK13949 shikimate kinase; Provisional
Probab=96.99 E-value=0.00074 Score=45.42 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
+|+|+|++|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998875
No 485
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.99 E-value=0.0015 Score=41.43 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
--|++-|+-|+|||||++.+...
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999863
No 486
>PRK02496 adk adenylate kinase; Provisional
Probab=96.97 E-value=0.00081 Score=45.72 Aligned_cols=22 Identities=23% Similarity=0.595 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
.+++|+|++||||||+.+.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 487
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.97 E-value=0.0008 Score=46.57 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998853
No 488
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0076 Score=46.42 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=23.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
...-+|+|+||.|+|||||+.-|++.-
T Consensus 611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred cccceeEEECCCCccHHHHHHHHhcCC
Confidence 456789999999999999999998843
No 489
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.97 E-value=0.0008 Score=46.94 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 490
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.97 E-value=0.00082 Score=46.68 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998753
No 491
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.96 E-value=0.00078 Score=46.04 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 492
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.94 E-value=0.00074 Score=46.15 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
+|+|+|++||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 493
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.94 E-value=0.0009 Score=46.57 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999853
No 494
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.94 E-value=0.00079 Score=46.52 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
--|+++|++|||||||++.+.+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999874
No 495
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.00082 Score=46.71 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
.++++|+.|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
No 496
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.00089 Score=47.35 Aligned_cols=23 Identities=43% Similarity=0.440 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999754
No 497
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.00083 Score=46.05 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-++++|++|||||||+|-+.+=.
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCc
Confidence 47899999999999999987733
No 498
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.93 E-value=0.00074 Score=47.42 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031083 18 LLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~ 37 (166)
|.+.|++|||||||++.+.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 67999999999999999875
No 499
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.93 E-value=0.00094 Score=46.19 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.+.++|+.|+|||||++.+.+-.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 500
>PRK10646 ADP-binding protein; Provisional
Probab=96.92 E-value=0.0051 Score=40.57 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
-|++-|+-|+|||||++.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999764
Done!