Query 031083
Match_columns 166
No_of_seqs 118 out of 1535
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 14:08:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.4E-41 4.7E-46 235.8 16.7 154 12-166 10-163 (216)
2 2gf9_A RAS-related protein RAB 100.0 1.2E-35 4.3E-40 201.9 20.5 161 5-166 12-172 (189)
3 2fu5_C RAS-related protein RAB 100.0 3.3E-36 1.1E-40 203.6 17.0 155 11-166 4-158 (183)
4 2hup_A RAS-related protein RAB 100.0 2.7E-36 9.4E-41 207.3 16.6 157 9-166 23-180 (201)
5 2a5j_A RAS-related protein RAB 100.0 1.3E-35 4.3E-40 202.3 19.1 157 9-166 15-171 (191)
6 2ew1_A RAS-related protein RAB 100.0 8.1E-36 2.8E-40 205.1 17.9 157 9-166 20-176 (201)
7 2bme_A RAB4A, RAS-related prot 100.0 2.1E-35 7.3E-40 200.0 18.1 159 7-166 2-160 (186)
8 3tkl_A RAS-related protein RAB 100.0 5.7E-35 1.9E-39 199.4 19.8 157 9-166 10-166 (196)
9 1z08_A RAS-related protein RAB 100.0 2.8E-35 9.5E-40 196.6 17.7 154 12-166 3-156 (170)
10 3tw8_B RAS-related protein RAB 100.0 8.9E-35 3E-39 195.8 19.6 156 9-166 3-158 (181)
11 2il1_A RAB12; G-protein, GDP, 100.0 1.2E-35 4E-40 202.7 15.3 161 5-166 16-177 (192)
12 2bcg_Y Protein YP2, GTP-bindin 100.0 1.1E-34 3.7E-39 199.8 20.1 155 11-166 4-158 (206)
13 1zbd_A Rabphilin-3A; G protein 100.0 2.1E-34 7.1E-39 197.9 20.9 155 11-166 4-158 (203)
14 2efe_B Small GTP-binding prote 100.0 1.3E-34 4.5E-39 195.2 19.5 155 11-166 8-162 (181)
15 1z0f_A RAB14, member RAS oncog 100.0 7.4E-35 2.5E-39 195.9 17.8 156 10-166 10-165 (179)
16 1ek0_A Protein (GTP-binding pr 100.0 1.1E-34 3.8E-39 193.4 18.5 153 14-166 2-156 (170)
17 1r2q_A RAS-related protein RAB 100.0 8E-35 2.7E-39 194.1 17.6 153 13-166 4-156 (170)
18 2fg5_A RAB-22B, RAS-related pr 100.0 6E-35 2.1E-39 199.1 17.3 158 8-166 16-173 (192)
19 2oil_A CATX-8, RAS-related pro 100.0 9.2E-35 3.2E-39 198.2 18.1 157 9-166 19-175 (193)
20 1z0j_A RAB-22, RAS-related pro 100.0 1.9E-34 6.7E-39 192.4 19.2 154 12-166 3-156 (170)
21 3q3j_B RHO-related GTP-binding 100.0 4.7E-35 1.6E-39 203.0 16.5 159 5-165 17-188 (214)
22 2o52_A RAS-related protein RAB 100.0 4.7E-35 1.6E-39 200.9 16.1 156 10-166 20-175 (200)
23 1g16_A RAS-related protein SEC 100.0 8.4E-35 2.9E-39 194.2 16.8 151 14-166 2-152 (170)
24 2g6b_A RAS-related protein RAB 100.0 4.1E-34 1.4E-38 192.7 20.0 156 10-166 5-161 (180)
25 3kkq_A RAS-related protein M-R 100.0 4E-34 1.4E-38 193.4 19.7 157 8-166 11-169 (183)
26 1z06_A RAS-related protein RAB 100.0 1.3E-34 4.4E-39 196.9 17.1 156 10-166 15-175 (189)
27 2p5s_A RAS and EF-hand domain 100.0 4.5E-35 1.5E-39 200.8 14.7 157 10-166 23-184 (199)
28 3t5g_A GTP-binding protein RHE 100.0 3E-34 1E-38 193.6 18.3 153 12-166 3-156 (181)
29 3cbq_A GTP-binding protein REM 100.0 8.5E-35 2.9E-39 199.0 15.8 156 10-166 18-175 (195)
30 3dz8_A RAS-related protein RAB 100.0 6.1E-36 2.1E-40 203.9 9.9 157 9-166 17-173 (191)
31 1z2a_A RAS-related protein RAB 100.0 2.6E-34 8.7E-39 191.5 17.5 152 13-166 3-154 (168)
32 2y8e_A RAB-protein 6, GH09086P 100.0 3.4E-34 1.2E-38 192.7 18.0 154 12-166 11-164 (179)
33 3c5c_A RAS-like protein 12; GD 100.0 2E-34 6.7E-39 195.9 16.6 154 10-166 16-173 (187)
34 3cpj_B GTP-binding protein YPT 100.0 2.9E-34 9.8E-39 200.1 17.4 155 11-166 9-163 (223)
35 3ihw_A Centg3; RAS, centaurin, 100.0 7.4E-34 2.5E-38 192.7 18.9 151 9-166 14-167 (184)
36 2hxs_A RAB-26, RAS-related pro 100.0 1.4E-34 4.7E-39 194.7 15.0 154 12-166 3-160 (178)
37 2fn4_A P23, RAS-related protei 100.0 6.5E-34 2.2E-38 191.6 18.2 155 10-166 4-159 (181)
38 3cph_A RAS-related protein SEC 100.0 9.8E-34 3.4E-38 195.7 18.9 155 10-166 15-169 (213)
39 1ky3_A GTP-binding protein YPT 100.0 3.4E-34 1.2E-38 193.1 16.1 156 11-166 4-165 (182)
40 3reg_A RHO-like small GTPase; 100.0 1.3E-33 4.5E-38 192.7 18.9 155 10-166 18-175 (194)
41 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.4E-33 4.6E-38 189.6 18.7 153 12-166 4-161 (177)
42 2f7s_A C25KG, RAS-related prot 100.0 1.7E-34 5.7E-39 200.3 14.3 156 10-166 20-186 (217)
43 3q85_A GTP-binding protein REM 100.0 9.6E-34 3.3E-38 189.0 16.9 151 15-166 2-154 (169)
44 3bc1_A RAS-related protein RAB 100.0 1.4E-33 4.7E-38 192.0 18.0 155 11-166 7-172 (195)
45 2atx_A Small GTP binding prote 100.0 1.8E-33 6.2E-38 191.9 17.8 154 11-166 14-180 (194)
46 2q3h_A RAS homolog gene family 100.0 2.4E-33 8.2E-38 192.3 18.1 156 9-166 14-182 (201)
47 3oes_A GTPase rhebl1; small GT 100.0 7.8E-34 2.7E-38 194.9 15.7 155 10-166 19-174 (201)
48 1x3s_A RAS-related protein RAB 100.0 2E-33 6.7E-38 191.5 17.6 157 8-166 8-165 (195)
49 1gwn_A RHO-related GTP-binding 100.0 1.1E-33 3.9E-38 194.9 16.1 158 7-166 20-191 (205)
50 3clv_A RAB5 protein, putative; 100.0 5E-33 1.7E-37 190.6 18.9 152 11-166 3-191 (208)
51 1m7b_A RND3/RHOE small GTP-bin 100.0 1.8E-33 6.1E-38 190.6 16.4 154 11-166 3-170 (184)
52 2bov_A RAla, RAS-related prote 100.0 5.5E-33 1.9E-37 190.9 18.8 154 11-166 10-164 (206)
53 1vg8_A RAS-related protein RAB 100.0 3.6E-33 1.2E-37 192.0 17.9 153 12-166 5-162 (207)
54 3l0i_B RAS-related protein RAB 100.0 1.1E-35 3.8E-40 203.8 5.0 156 10-166 28-183 (199)
55 2yc2_C IFT27, small RAB-relate 100.0 3.5E-34 1.2E-38 197.1 12.5 155 12-166 17-179 (208)
56 1c1y_A RAS-related protein RAP 100.0 3.7E-33 1.2E-37 185.7 16.7 151 14-166 2-154 (167)
57 2nzj_A GTP-binding protein REM 100.0 5.2E-33 1.8E-37 186.3 17.2 152 13-166 2-156 (175)
58 2iwr_A Centaurin gamma 1; ANK 100.0 7.9E-33 2.7E-37 186.2 18.0 147 13-166 5-156 (178)
59 1kao_A RAP2A; GTP-binding prot 100.0 4.4E-33 1.5E-37 185.1 16.0 150 15-166 3-153 (167)
60 1u8z_A RAS-related protein RAL 100.0 6.1E-33 2.1E-37 184.5 16.7 151 14-166 3-154 (168)
61 2g3y_A GTP-binding protein GEM 100.0 6.7E-33 2.3E-37 191.7 17.1 155 10-166 32-190 (211)
62 2gco_A H9, RHO-related GTP-bin 100.0 1.2E-32 4.2E-37 189.0 18.3 156 9-166 19-187 (201)
63 2a9k_A RAS-related protein RAL 100.0 9.9E-33 3.4E-37 186.7 17.0 153 12-166 15-168 (187)
64 3q72_A GTP-binding protein RAD 100.0 1.8E-32 6.2E-37 182.3 17.6 149 15-166 2-151 (166)
65 3con_A GTPase NRAS; structural 100.0 4.3E-32 1.5E-36 184.4 19.5 154 10-166 16-170 (190)
66 4dsu_A GTPase KRAS, isoform 2B 100.0 3.3E-32 1.1E-36 184.5 18.8 151 13-166 2-153 (189)
67 2j1l_A RHO-related GTP-binding 100.0 1.2E-32 4.2E-37 190.8 16.9 153 12-166 31-196 (214)
68 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.6E-32 5.4E-37 185.7 17.1 152 13-166 3-167 (186)
69 2atv_A RERG, RAS-like estrogen 100.0 1.2E-32 4.1E-37 188.2 16.4 152 12-166 25-178 (196)
70 2erx_A GTP-binding protein DI- 100.0 2E-32 6.9E-37 182.8 16.2 151 14-166 2-154 (172)
71 2j0v_A RAC-like GTP-binding pr 100.0 1.1E-32 3.8E-37 190.5 15.2 153 12-166 6-167 (212)
72 4djt_A GTP-binding nuclear pro 100.0 8.3E-33 2.9E-37 191.8 14.3 154 12-166 8-162 (218)
73 2fv8_A H6, RHO-related GTP-bin 100.0 4.3E-32 1.5E-36 187.1 17.3 153 12-166 22-187 (207)
74 3gj0_A GTP-binding nuclear pro 100.0 1.3E-32 4.3E-37 191.4 13.8 154 9-166 9-162 (221)
75 2ce2_X GTPase HRAS; signaling 100.0 1.9E-31 6.5E-36 176.8 18.7 149 15-166 3-152 (166)
76 3bwd_D RAC-like GTP-binding pr 100.0 3E-33 1E-37 188.7 10.1 153 12-166 5-168 (182)
77 2gf0_A GTP-binding protein DI- 100.0 7.7E-32 2.6E-36 184.3 16.7 151 13-166 6-158 (199)
78 2cjw_A GTP-binding protein GEM 100.0 3E-31 1E-35 181.0 18.0 152 13-166 4-159 (192)
79 4gzl_A RAS-related C3 botulinu 100.0 8.4E-32 2.9E-36 185.3 15.3 153 12-166 27-192 (204)
80 4bas_A ADP-ribosylation factor 100.0 1.8E-31 6.3E-36 182.4 15.3 158 5-166 7-176 (199)
81 3t1o_A Gliding protein MGLA; G 100.0 2.2E-32 7.6E-37 186.5 10.4 151 11-166 10-179 (198)
82 2h57_A ADP-ribosylation factor 100.0 6.9E-31 2.4E-35 178.6 15.4 150 10-166 16-174 (190)
83 2f9l_A RAB11B, member RAS onco 100.0 4.1E-30 1.4E-34 176.1 18.3 153 13-166 3-155 (199)
84 1zd9_A ADP-ribosylation factor 100.0 1.2E-30 4E-35 177.3 14.9 153 7-166 14-172 (188)
85 2h17_A ADP-ribosylation factor 100.0 5.1E-31 1.8E-35 178.0 12.4 152 7-166 13-170 (181)
86 1f6b_A SAR1; gtpases, N-termin 100.0 1.4E-30 4.9E-35 178.4 14.4 146 13-166 23-186 (198)
87 1oix_A RAS-related protein RAB 100.0 8.4E-30 2.9E-34 173.7 18.1 156 10-166 24-179 (191)
88 1m2o_B GTP-binding protein SAR 100.0 4.6E-30 1.6E-34 174.8 16.2 146 13-166 21-179 (190)
89 1upt_A ARL1, ADP-ribosylation 100.0 1.7E-30 5.8E-35 173.5 12.8 147 12-166 4-156 (171)
90 3llu_A RAS-related GTP-binding 100.0 3.6E-31 1.2E-35 181.0 9.7 156 6-166 11-184 (196)
91 2wkq_A NPH1-1, RAS-related C3 100.0 1.5E-29 5.1E-34 185.3 17.4 152 13-166 153-317 (332)
92 1ksh_A ARF-like protein 2; sma 100.0 1.1E-29 3.9E-34 171.9 15.5 146 13-166 16-167 (186)
93 1zj6_A ADP-ribosylation factor 100.0 1.7E-30 6E-35 176.2 10.6 146 13-166 14-165 (187)
94 3th5_A RAS-related C3 botulinu 99.9 2.2E-32 7.4E-37 188.0 0.0 152 13-166 28-192 (204)
95 1r8s_A ADP-ribosylation factor 100.0 1.3E-30 4.6E-35 173.0 8.4 143 16-166 1-149 (164)
96 2b6h_A ADP-ribosylation factor 100.0 2.3E-30 7.8E-35 176.6 9.8 147 12-166 26-178 (192)
97 2zej_A Dardarin, leucine-rich 100.0 8.3E-31 2.8E-35 177.6 6.9 148 15-164 2-162 (184)
98 1fzq_A ADP-ribosylation factor 100.0 2.3E-29 7.8E-34 170.1 13.0 147 12-166 13-165 (181)
99 3c5h_A Glucocorticoid receptor 100.0 1.4E-30 4.9E-35 184.9 6.2 157 7-166 11-242 (255)
100 1moz_A ARL1, ADP-ribosylation 100.0 2.5E-29 8.7E-34 169.6 11.7 146 13-166 16-167 (183)
101 2x77_A ADP-ribosylation factor 100.0 8E-30 2.7E-34 173.1 8.8 146 13-166 20-171 (189)
102 2fh5_B SR-beta, signal recogni 100.0 3E-29 1E-33 173.4 10.2 120 13-135 5-130 (214)
103 3r7w_A Gtpase1, GTP-binding pr 100.0 3.2E-28 1.1E-32 177.0 12.5 146 14-162 2-165 (307)
104 2wji_A Ferrous iron transport 100.0 4.1E-28 1.4E-32 161.6 11.6 142 15-166 3-152 (165)
105 2lkc_A Translation initiation 100.0 1.4E-27 4.8E-32 160.3 12.0 142 12-166 5-158 (178)
106 2qu8_A Putative nucleolar GTP- 99.9 1.9E-27 6.6E-32 166.1 12.7 152 10-166 24-192 (228)
107 3o47_A ADP-ribosylation factor 99.9 3.3E-28 1.1E-32 178.4 8.6 147 12-166 162-314 (329)
108 3r7w_B Gtpase2, GTP-binding pr 99.9 1.1E-28 3.8E-33 178.8 4.9 140 17-162 1-158 (331)
109 1nrj_B SR-beta, signal recogni 99.9 2.8E-28 9.5E-33 169.0 5.7 144 12-165 9-170 (218)
110 2wjg_A FEOB, ferrous iron tran 99.9 4.8E-27 1.6E-31 159.1 10.3 143 14-166 6-156 (188)
111 3lvq_E ARF-GAP with SH3 domain 99.9 6.3E-26 2.1E-30 174.6 15.6 144 12-166 319-471 (497)
112 3dpu_A RAB family protein; roc 99.9 3E-27 1E-31 183.3 7.4 151 11-166 37-195 (535)
113 2gj8_A MNME, tRNA modification 99.9 9.9E-27 3.4E-31 156.0 8.7 142 14-166 3-153 (172)
114 3a1s_A Iron(II) transport prot 99.9 2.3E-26 7.8E-31 163.4 11.0 144 13-166 3-154 (258)
115 2dyk_A GTP-binding protein; GT 99.9 1.3E-26 4.3E-31 153.2 8.6 139 16-166 2-149 (161)
116 2cxx_A Probable GTP-binding pr 99.9 5.4E-27 1.8E-31 159.0 6.9 141 16-166 2-171 (190)
117 1svi_A GTP-binding protein YSX 99.9 9.3E-27 3.2E-31 158.6 7.7 148 11-166 19-182 (195)
118 3iby_A Ferrous iron transport 99.9 2.3E-26 7.9E-31 163.2 7.7 141 16-166 2-154 (256)
119 3iev_A GTP-binding protein ERA 99.9 9.4E-25 3.2E-29 158.7 14.7 152 10-166 5-169 (308)
120 3pqc_A Probable GTP-binding pr 99.9 1.2E-25 4.1E-30 152.8 8.9 147 10-166 18-181 (195)
121 3i8s_A Ferrous iron transport 99.9 4.7E-26 1.6E-30 163.1 7.1 142 15-166 3-156 (274)
122 3b1v_A Ferrous iron uptake tra 99.9 3.8E-26 1.3E-30 163.3 6.1 142 14-166 2-151 (272)
123 3k53_A Ferrous iron transport 99.9 4.5E-25 1.6E-29 157.8 9.6 143 15-166 3-153 (271)
124 4dhe_A Probable GTP-binding pr 99.9 2.3E-24 7.8E-29 149.7 6.5 150 11-166 25-198 (223)
125 3gee_A MNME, tRNA modification 99.9 1.9E-23 6.6E-28 159.3 11.8 145 14-166 232-385 (476)
126 3j2k_7 ERF3, eukaryotic polype 99.9 3.6E-23 1.2E-27 156.9 12.8 152 10-166 12-212 (439)
127 1cip_A Protein (guanine nucleo 99.9 7.9E-24 2.7E-28 156.0 9.0 111 54-166 185-331 (353)
128 2e87_A Hypothetical protein PH 99.9 9.8E-23 3.3E-27 150.9 14.6 148 13-166 165-323 (357)
129 3qq5_A Small GTP-binding prote 99.9 2.6E-24 8.8E-29 161.8 5.9 146 11-166 30-183 (423)
130 2ged_A SR-beta, signal recogni 99.9 1.9E-23 6.4E-28 142.0 9.4 114 12-134 45-170 (193)
131 2hjg_A GTP-binding protein ENG 99.9 1.3E-23 4.5E-28 159.3 9.3 148 12-166 172-336 (436)
132 1lnz_A SPO0B-associated GTP-bi 99.9 4.8E-24 1.6E-28 156.6 6.4 145 16-166 159-317 (342)
133 4dcu_A GTP-binding protein ENG 99.9 2.5E-23 8.5E-28 158.6 9.8 148 12-166 192-356 (456)
134 1wf3_A GTP-binding protein; GT 99.9 1.3E-22 4.6E-27 146.8 12.8 144 13-166 5-160 (301)
135 3ohm_A Guanine nucleotide-bind 99.9 4.4E-23 1.5E-27 150.2 9.9 112 53-166 158-305 (327)
136 1wb1_A Translation elongation 99.9 6.1E-23 2.1E-27 157.1 9.8 145 13-166 17-176 (482)
137 1jny_A EF-1-alpha, elongation 99.9 2.3E-23 8E-28 157.8 6.9 151 13-166 4-200 (435)
138 1xzp_A Probable tRNA modificat 99.9 7.9E-23 2.7E-27 156.1 8.9 140 15-166 243-392 (482)
139 3p26_A Elongation factor 1 alp 99.9 1.1E-22 3.6E-27 156.0 9.5 149 13-166 31-225 (483)
140 2xtz_A Guanine nucleotide-bind 99.9 7.4E-23 2.5E-27 150.8 7.8 105 62-166 181-332 (354)
141 1r5b_A Eukaryotic peptide chai 99.9 5.8E-23 2E-27 156.8 7.5 153 12-166 40-239 (467)
142 2qtf_A Protein HFLX, GTP-bindi 99.9 7E-22 2.4E-26 146.3 12.6 147 17-166 181-341 (364)
143 3sjy_A Translation initiation 99.9 2.3E-21 7.8E-26 145.7 15.4 153 11-166 4-179 (403)
144 1s0u_A EIF-2-gamma, translatio 99.9 1.7E-21 6E-26 146.5 14.6 149 12-166 5-185 (408)
145 3cb4_D GTP-binding protein LEP 99.9 4.5E-22 1.5E-26 155.2 11.7 147 13-166 2-169 (599)
146 1zun_B Sulfate adenylate trans 99.9 7.3E-22 2.5E-26 149.6 12.3 149 12-166 21-211 (434)
147 1zcb_A G alpha I/13; GTP-bindi 99.9 2.4E-22 8.4E-27 148.5 9.2 110 55-166 194-340 (362)
148 3t5d_A Septin-7; GTP-binding p 99.9 1.7E-22 5.9E-27 144.7 7.2 151 12-166 5-191 (274)
149 1kk1_A EIF2gamma; initiation o 99.9 7.6E-22 2.6E-26 148.6 10.6 152 9-166 4-187 (410)
150 1mky_A Probable GTP-binding pr 99.9 5.7E-22 2E-26 150.4 9.9 138 16-166 2-153 (439)
151 2ywe_A GTP-binding protein LEP 99.9 1.1E-21 3.9E-26 152.7 11.6 147 13-166 4-171 (600)
152 3izq_1 HBS1P, elongation facto 99.9 7.9E-22 2.7E-26 154.6 10.2 153 12-166 164-359 (611)
153 1f60_A Elongation factor EEF1A 99.9 8E-23 2.7E-27 155.7 4.2 149 13-166 5-199 (458)
154 3lxx_A GTPase IMAP family memb 99.9 2.5E-21 8.6E-26 136.0 11.5 147 11-162 25-192 (239)
155 2xtp_A GTPase IMAP family memb 99.9 1.3E-21 4.5E-26 139.0 10.1 151 11-166 18-195 (260)
156 3izy_P Translation initiation 99.9 5.4E-24 1.9E-28 163.9 -2.6 148 14-166 3-155 (537)
157 2qag_A Septin-2, protein NEDD5 99.9 1.4E-22 4.9E-27 150.1 4.5 149 12-165 34-220 (361)
158 4fid_A G protein alpha subunit 99.9 2.5E-21 8.4E-26 141.5 10.6 110 55-166 154-315 (340)
159 1azs_C GS-alpha; complex (lyas 99.9 2.5E-21 8.6E-26 144.3 10.2 76 56-133 211-297 (402)
160 1ega_A Protein (GTP-binding pr 99.9 8.8E-21 3E-25 137.4 12.5 145 14-166 7-162 (301)
161 3geh_A MNME, tRNA modification 99.9 7.4E-22 2.5E-26 150.1 6.7 140 14-166 223-371 (462)
162 3lxw_A GTPase IMAP family memb 99.8 1.7E-20 5.9E-25 132.4 13.1 151 10-162 16-186 (247)
163 1zo1_I IF2, translation initia 99.8 5.5E-23 1.9E-27 157.1 -0.2 145 13-166 2-154 (501)
164 1d2e_A Elongation factor TU (E 99.8 2.1E-21 7.2E-26 145.6 7.7 146 14-165 2-171 (397)
165 3mca_A HBS1, elongation factor 99.8 1.3E-21 4.5E-26 152.9 6.8 150 12-166 174-370 (592)
166 2c78_A Elongation factor TU-A; 99.8 1.5E-21 5.3E-26 146.7 6.5 148 12-165 8-180 (405)
167 3def_A T7I23.11 protein; chlor 99.8 1.1E-19 3.6E-24 129.4 14.6 118 13-133 34-164 (262)
168 3tr5_A RF-3, peptide chain rel 99.8 9.8E-21 3.4E-25 146.1 9.9 116 13-134 11-148 (528)
169 2hjg_A GTP-binding protein ENG 99.8 6.4E-22 2.2E-26 150.0 2.3 139 16-166 4-152 (436)
170 1mky_A Probable GTP-binding pr 99.8 5.2E-20 1.8E-24 139.7 12.2 147 13-166 178-342 (439)
171 1g7s_A Translation initiation 99.8 5E-20 1.7E-24 143.8 10.3 112 14-134 4-136 (594)
172 3avx_A Elongation factor TS, e 99.8 8.4E-20 2.9E-24 149.3 8.4 150 11-164 292-463 (1289)
173 1h65_A Chloroplast outer envel 99.8 1.6E-18 5.6E-23 123.7 13.8 119 13-134 37-168 (270)
174 2elf_A Protein translation elo 99.8 5.1E-20 1.8E-24 136.7 5.9 134 17-166 23-167 (370)
175 1wxq_A GTP-binding protein; st 99.8 4.3E-19 1.5E-23 132.8 10.1 85 16-100 1-114 (397)
176 1pui_A ENGB, probable GTP-bind 99.8 2.4E-19 8.2E-24 123.2 6.4 147 11-166 22-186 (210)
177 2aka_B Dynamin-1; fusion prote 99.8 2.4E-19 8.1E-24 129.6 5.9 150 12-166 23-240 (299)
178 4dcu_A GTP-binding protein ENG 99.8 4E-20 1.4E-24 140.9 1.9 140 15-166 23-172 (456)
179 1u0l_A Probable GTPase ENGC; p 99.8 7.3E-20 2.5E-24 132.6 3.2 125 30-166 32-160 (301)
180 2h5e_A Peptide chain release f 99.8 6.9E-18 2.4E-22 130.3 12.9 145 13-166 11-182 (529)
181 3t34_A Dynamin-related protein 99.8 2.7E-19 9.4E-24 132.6 4.6 148 14-165 33-247 (360)
182 1udx_A The GTP-binding protein 99.8 3E-18 1E-22 128.6 9.4 146 16-166 158-312 (416)
183 2qag_C Septin-7; cell cycle, c 99.8 5.6E-18 1.9E-22 127.2 10.8 150 12-166 28-214 (418)
184 2qnr_A Septin-2, protein NEDD5 99.8 1.9E-19 6.5E-24 130.4 2.5 150 12-166 15-201 (301)
185 2dy1_A Elongation factor G; tr 99.7 6.4E-18 2.2E-22 133.8 9.8 116 12-133 6-139 (665)
186 1jal_A YCHF protein; nucleotid 99.7 2.9E-17 9.9E-22 121.0 12.2 147 15-162 2-240 (363)
187 2xex_A Elongation factor G; GT 99.7 3.1E-17 1.1E-21 130.4 11.3 140 12-160 7-168 (693)
188 1dar_A EF-G, elongation factor 99.7 5.6E-17 1.9E-21 128.9 11.7 120 10-135 7-144 (691)
189 2j69_A Bacterial dynamin-like 99.7 4E-17 1.4E-21 129.8 10.0 119 13-134 67-244 (695)
190 1n0u_A EF-2, elongation factor 99.7 2.6E-17 8.9E-22 133.2 8.8 120 12-135 16-165 (842)
191 1jwy_B Dynamin A GTPase domain 99.7 9.3E-18 3.2E-22 122.1 5.2 147 12-163 21-240 (315)
192 2rdo_7 EF-G, elongation factor 99.7 2.2E-16 7.6E-21 125.6 12.9 122 11-136 6-150 (704)
193 2dby_A GTP-binding protein; GD 99.7 2E-16 6.9E-21 117.1 8.5 149 16-164 2-247 (368)
194 2qpt_A EH domain-containing pr 99.6 2.2E-16 7.6E-21 122.5 7.5 119 12-133 62-231 (550)
195 2x2e_A Dynamin-1; nitration, h 99.6 1.1E-17 3.7E-22 123.7 -1.2 149 13-166 29-245 (353)
196 2wsm_A Hydrogenase expression/ 99.6 7.5E-16 2.6E-20 106.6 4.1 141 14-166 29-201 (221)
197 4a9a_A Ribosome-interacting GT 99.6 2.7E-14 9.2E-19 105.8 12.5 137 12-152 69-221 (376)
198 2hf9_A Probable hydrogenase ni 99.6 9.5E-18 3.2E-22 116.5 -6.4 141 14-166 37-211 (226)
199 3vqt_A RF-3, peptide chain rel 99.6 1.9E-14 6.4E-19 111.7 11.0 120 12-137 28-169 (548)
200 3p32_A Probable GTPase RV1496/ 99.5 5.2E-15 1.8E-19 109.4 4.0 92 64-166 172-271 (355)
201 4fn5_A EF-G 1, elongation fact 99.5 1.6E-13 5.6E-18 109.5 10.8 123 12-138 10-155 (709)
202 2yv5_A YJEQ protein; hydrolase 99.5 1.2E-13 4E-18 100.1 7.9 89 74-166 66-156 (302)
203 2www_A Methylmalonic aciduria 99.5 3.6E-13 1.2E-17 99.3 9.5 90 64-166 167-266 (349)
204 2ohf_A Protein OLA1, GTP-bindi 99.4 8.9E-14 3E-18 103.5 5.2 91 12-102 19-131 (396)
205 3j25_A Tetracycline resistance 99.4 3.2E-14 1.1E-18 112.3 1.4 117 15-137 2-136 (638)
206 2p67_A LAO/AO transport system 99.4 2.6E-13 8.7E-18 99.9 4.8 91 64-166 149-248 (341)
207 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 6.4E-12 2.2E-16 93.6 11.7 88 12-99 17-127 (392)
208 3zvr_A Dynamin-1; hydrolase, D 99.4 6.1E-13 2.1E-17 106.0 6.3 147 13-166 49-265 (772)
209 1yrb_A ATP(GTP)binding protein 99.4 1.5E-12 5.2E-17 92.1 7.8 69 64-133 109-184 (262)
210 3l82_B F-box only protein 4; T 99.2 3.2E-12 1.1E-16 86.8 2.7 92 71-166 109-210 (227)
211 2qm8_A GTPase/ATPase; G protei 99.2 3.8E-11 1.3E-15 88.1 6.9 91 64-166 148-248 (337)
212 3l2o_B F-box only protein 4; s 99.1 7.1E-11 2.4E-15 83.9 3.6 93 71-166 194-295 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.0 5.3E-11 1.8E-15 88.4 -0.5 136 16-162 163-314 (369)
214 2qag_B Septin-6, protein NEDD5 99.0 1E-09 3.5E-14 82.5 6.2 26 15-40 42-67 (427)
215 3sop_A Neuronal-specific septi 98.9 5.7E-09 2E-13 74.3 9.4 24 15-38 2-25 (270)
216 3h2y_A GTPase family protein; 98.9 1.6E-10 5.6E-15 85.7 -1.0 131 16-157 161-308 (368)
217 3h2y_A GTPase family protein; 98.9 1.7E-09 5.8E-14 80.2 4.3 86 73-166 55-147 (368)
218 3ec1_A YQEH GTPase; atnos1, at 98.7 2.9E-09 9.8E-14 79.1 1.7 86 73-166 57-149 (369)
219 1puj_A YLQF, conserved hypothe 98.6 2.2E-08 7.4E-13 71.7 3.8 88 68-166 3-93 (282)
220 2j37_W Signal recognition part 98.6 8.3E-08 2.8E-12 73.7 7.1 130 13-156 99-271 (504)
221 1puj_A YLQF, conserved hypothe 98.5 1.1E-07 3.6E-12 68.2 5.6 57 13-74 118-175 (282)
222 1tq4_A IIGP1, interferon-induc 98.4 1.3E-06 4.6E-11 65.5 9.6 110 15-132 69-187 (413)
223 3cnl_A YLQF, putative uncharac 98.4 8.1E-08 2.8E-12 68.0 2.7 56 16-75 100-155 (262)
224 3dm5_A SRP54, signal recogniti 98.4 1.6E-06 5.5E-11 65.5 9.6 86 64-160 183-274 (443)
225 1f5n_A Interferon-induced guan 98.3 4E-07 1.4E-11 71.2 3.9 28 12-39 35-62 (592)
226 2v3c_C SRP54, signal recogniti 98.3 3.5E-06 1.2E-10 63.7 8.7 84 64-159 181-272 (432)
227 3kl4_A SRP54, signal recogniti 98.2 1.4E-06 4.7E-11 65.8 5.6 86 64-160 180-273 (433)
228 1t9h_A YLOQ, probable GTPase E 98.2 3.7E-06 1.3E-10 60.8 6.1 86 78-166 77-164 (307)
229 3cnl_A YLQF, putative uncharac 98.1 5.9E-07 2E-11 63.6 1.0 83 71-165 4-87 (262)
230 3szr_A Interferon-induced GTP- 98.1 6.7E-06 2.3E-10 64.8 6.2 24 17-40 47-70 (608)
231 1j8m_F SRP54, signal recogniti 98.0 1.7E-05 6E-10 57.0 7.4 84 64-159 181-273 (297)
232 2rcn_A Probable GTPase ENGC; Y 97.9 2.3E-05 7.8E-10 57.8 5.8 78 84-165 127-205 (358)
233 1bif_A 6-phosphofructo-2-kinas 97.8 6.9E-07 2.4E-11 68.3 -3.9 102 13-116 37-148 (469)
234 3q5d_A Atlastin-1; G protein, 97.7 4E-05 1.4E-09 58.1 5.4 26 12-37 64-89 (447)
235 1ye8_A Protein THEP1, hypothet 97.6 4.4E-05 1.5E-09 50.8 3.1 22 17-38 2-23 (178)
236 1kgd_A CASK, peripheral plasma 97.5 5.6E-05 1.9E-09 50.2 2.9 22 17-38 7-28 (180)
237 1lvg_A Guanylate kinase, GMP k 97.5 6.7E-05 2.3E-09 50.7 2.9 22 16-37 5-26 (198)
238 3ney_A 55 kDa erythrocyte memb 97.4 0.00012 4E-09 49.5 3.5 25 14-38 18-42 (197)
239 3a00_A Guanylate kinase, GMP k 97.4 9.2E-05 3.1E-09 49.4 2.8 20 18-37 4-23 (186)
240 3tr0_A Guanylate kinase, GMP k 97.4 0.0001 3.5E-09 49.7 2.9 22 17-38 9-30 (205)
241 1zp6_A Hypothetical protein AT 97.3 0.00012 4.1E-09 48.8 3.0 23 16-38 10-32 (191)
242 4gp7_A Metallophosphoesterase; 97.3 0.0001 3.6E-09 48.5 2.7 20 17-36 11-30 (171)
243 1s96_A Guanylate kinase, GMP k 97.3 0.00011 3.9E-09 50.4 2.9 23 16-38 17-39 (219)
244 1znw_A Guanylate kinase, GMP k 97.3 0.00011 3.9E-09 49.8 2.9 23 16-38 21-43 (207)
245 1z6g_A Guanylate kinase; struc 97.3 0.00013 4.4E-09 50.0 2.9 23 16-38 24-46 (218)
246 1ex7_A Guanylate kinase; subst 97.3 0.00016 5.5E-09 48.4 3.1 20 18-37 4-23 (186)
247 1ukz_A Uridylate kinase; trans 97.3 0.00027 9.3E-09 47.6 4.1 30 8-37 8-37 (203)
248 3c8u_A Fructokinase; YP_612366 97.3 0.00019 6.6E-09 48.7 3.3 25 13-37 20-44 (208)
249 3tau_A Guanylate kinase, GMP k 97.2 0.00017 5.8E-09 49.0 2.9 23 16-38 9-31 (208)
250 2wwf_A Thymidilate kinase, put 97.2 0.00024 8.3E-09 48.0 3.6 24 14-37 9-32 (212)
251 1ak2_A Adenylate kinase isoenz 97.2 0.00021 7.3E-09 49.3 3.4 27 11-37 12-38 (233)
252 3tif_A Uncharacterized ABC tra 97.2 0.00019 6.5E-09 49.8 3.0 23 17-39 33-55 (235)
253 1htw_A HI0065; nucleotide-bind 97.2 0.00022 7.4E-09 46.5 2.9 23 17-39 35-57 (158)
254 2xxa_A Signal recognition part 97.2 0.0078 2.7E-07 45.5 11.7 84 64-159 184-274 (433)
255 1knq_A Gluconate kinase; ALFA/ 97.2 0.00033 1.1E-08 46.0 3.8 22 16-37 9-30 (175)
256 2qor_A Guanylate kinase; phosp 97.1 0.00027 9.1E-09 47.8 3.1 22 16-37 13-34 (204)
257 2pcj_A ABC transporter, lipopr 97.1 0.00024 8.1E-09 49.0 2.9 23 17-39 32-54 (224)
258 2j41_A Guanylate kinase; GMP, 97.1 0.00025 8.5E-09 47.8 2.9 24 16-39 7-30 (207)
259 1kag_A SKI, shikimate kinase I 97.1 0.00027 9.2E-09 46.3 2.9 23 16-38 5-27 (173)
260 2bdt_A BH3686; alpha-beta prot 97.1 0.00026 8.9E-09 47.1 2.9 21 17-37 4-24 (189)
261 2onk_A Molybdate/tungstate ABC 97.1 0.00029 1E-08 49.1 3.2 23 17-39 26-48 (240)
262 3lw7_A Adenylate kinase relate 97.1 0.00032 1.1E-08 45.7 3.2 20 16-35 2-21 (179)
263 2rcn_A Probable GTPase ENGC; Y 97.1 0.00031 1E-08 51.8 3.2 24 17-40 217-240 (358)
264 1b0u_A Histidine permease; ABC 97.1 0.0003 1E-08 49.7 3.0 23 17-39 34-56 (262)
265 3asz_A Uridine kinase; cytidin 97.1 0.00034 1.1E-08 47.4 3.2 23 15-37 6-28 (211)
266 3gfo_A Cobalt import ATP-bindi 97.1 0.0003 1E-08 50.0 3.0 23 17-39 36-58 (275)
267 4eun_A Thermoresistant glucoki 97.1 0.00031 1E-08 47.4 2.9 23 15-37 29-51 (200)
268 1sgw_A Putative ABC transporte 97.1 0.00032 1.1E-08 48.0 3.0 23 17-39 37-59 (214)
269 2cbz_A Multidrug resistance-as 97.1 0.00032 1.1E-08 48.8 3.0 22 17-38 33-54 (237)
270 3kb2_A SPBC2 prophage-derived 97.1 0.00036 1.2E-08 45.5 3.1 21 17-37 3-23 (173)
271 2bbw_A Adenylate kinase 4, AK4 97.1 0.00039 1.3E-08 48.4 3.4 21 16-36 28-48 (246)
272 1y63_A LMAJ004144AAA protein; 97.1 0.00046 1.6E-08 45.9 3.6 25 14-38 9-33 (184)
273 4g1u_C Hemin import ATP-bindin 97.1 0.00033 1.1E-08 49.6 3.0 23 17-39 39-61 (266)
274 1ly1_A Polynucleotide kinase; 97.1 0.00044 1.5E-08 45.4 3.4 22 16-37 3-24 (181)
275 1g6h_A High-affinity branched- 97.1 0.00034 1.1E-08 49.3 3.0 23 17-39 35-57 (257)
276 3fb4_A Adenylate kinase; psych 97.0 0.00038 1.3E-08 47.3 3.1 22 16-37 1-22 (216)
277 2eyu_A Twitching motility prot 97.0 0.00034 1.2E-08 49.3 2.9 22 16-37 26-47 (261)
278 2cdn_A Adenylate kinase; phosp 97.0 0.0005 1.7E-08 46.2 3.7 26 12-37 17-42 (201)
279 1mv5_A LMRA, multidrug resista 97.0 0.00039 1.3E-08 48.5 3.2 23 17-39 30-52 (243)
280 4ido_A Atlastin-1; GTPase, GTP 97.0 0.0018 6.1E-08 49.1 6.9 64 12-75 64-151 (457)
281 2i3b_A HCR-ntpase, human cance 97.0 0.00036 1.2E-08 46.8 2.9 21 17-37 3-23 (189)
282 2olj_A Amino acid ABC transpor 97.0 0.00037 1.3E-08 49.3 3.0 23 17-39 52-74 (263)
283 2pze_A Cystic fibrosis transme 97.0 0.00037 1.3E-08 48.1 3.0 23 17-39 36-58 (229)
284 3dl0_A Adenylate kinase; phosp 97.0 0.0004 1.4E-08 47.2 3.1 22 16-37 1-22 (216)
285 2ff7_A Alpha-hemolysin translo 97.0 0.0004 1.4E-08 48.6 3.2 23 17-39 37-59 (247)
286 1vpl_A ABC transporter, ATP-bi 97.0 0.00039 1.3E-08 48.9 3.0 23 17-39 43-65 (256)
287 1ji0_A ABC transporter; ATP bi 97.0 0.00039 1.3E-08 48.4 3.0 23 17-39 34-56 (240)
288 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00042 1.4E-08 48.5 3.1 22 17-38 31-52 (250)
289 2qi9_C Vitamin B12 import ATP- 97.0 0.0004 1.4E-08 48.6 3.0 23 17-39 28-50 (249)
290 2zu0_C Probable ATP-dependent 97.0 0.00045 1.5E-08 48.9 3.2 22 17-38 48-69 (267)
291 1uf9_A TT1252 protein; P-loop, 97.0 0.00053 1.8E-08 46.0 3.4 27 12-38 5-31 (203)
292 1qhx_A CPT, protein (chloramph 97.0 0.00046 1.6E-08 45.4 3.0 22 16-37 4-25 (178)
293 3ec2_A DNA replication protein 97.0 0.00036 1.2E-08 46.1 2.5 23 15-37 38-60 (180)
294 3t61_A Gluconokinase; PSI-biol 97.0 0.00047 1.6E-08 46.4 3.0 23 15-37 18-40 (202)
295 1np6_A Molybdopterin-guanine d 97.0 0.00047 1.6E-08 45.7 2.9 24 15-38 6-29 (174)
296 2vp4_A Deoxynucleoside kinase; 97.0 0.00056 1.9E-08 47.2 3.5 27 12-38 17-43 (230)
297 2ixe_A Antigen peptide transpo 97.0 0.00043 1.5E-08 49.1 3.0 23 17-39 47-69 (271)
298 2ghi_A Transport protein; mult 97.0 0.00048 1.6E-08 48.6 3.2 22 17-38 48-69 (260)
299 2ihy_A ABC transporter, ATP-bi 97.0 0.0005 1.7E-08 49.0 3.2 23 17-39 49-71 (279)
300 3vaa_A Shikimate kinase, SK; s 97.0 0.00053 1.8E-08 46.1 3.2 23 15-37 25-47 (199)
301 3b85_A Phosphate starvation-in 97.0 0.00033 1.1E-08 47.8 2.1 22 17-38 24-45 (208)
302 2v9p_A Replication protein E1; 96.9 0.00048 1.6E-08 49.7 3.0 22 16-37 127-148 (305)
303 3lnc_A Guanylate kinase, GMP k 96.9 0.00029 9.9E-09 48.6 1.8 22 17-38 29-51 (231)
304 2nq2_C Hypothetical ABC transp 96.9 0.00049 1.7E-08 48.3 3.0 23 17-39 33-55 (253)
305 2if2_A Dephospho-COA kinase; a 96.9 0.00051 1.8E-08 46.2 3.0 22 16-37 2-23 (204)
306 2yz2_A Putative ABC transporte 96.9 0.0005 1.7E-08 48.6 3.0 23 17-39 35-57 (266)
307 2ehv_A Hypothetical protein PH 96.9 0.00054 1.8E-08 47.4 3.1 20 17-36 32-51 (251)
308 2rhm_A Putative kinase; P-loop 96.9 0.00073 2.5E-08 44.9 3.6 23 15-37 5-27 (193)
309 3uie_A Adenylyl-sulfate kinase 96.9 0.00053 1.8E-08 46.2 2.9 24 14-37 24-47 (200)
310 3sr0_A Adenylate kinase; phosp 96.9 0.00063 2.2E-08 46.3 3.2 22 16-37 1-22 (206)
311 3tlx_A Adenylate kinase 2; str 96.9 0.00074 2.5E-08 47.0 3.6 24 14-37 28-51 (243)
312 1jjv_A Dephospho-COA kinase; P 96.9 0.00072 2.5E-08 45.6 3.5 22 16-37 3-24 (206)
313 1u0l_A Probable GTPase ENGC; p 96.9 0.00069 2.4E-08 48.7 3.5 24 17-40 171-194 (301)
314 1cke_A CK, MSSA, protein (cyti 96.9 0.00062 2.1E-08 46.6 3.1 22 16-37 6-27 (227)
315 1nks_A Adenylate kinase; therm 96.9 0.00066 2.3E-08 45.0 3.2 21 17-37 3-23 (194)
316 2f6r_A COA synthase, bifunctio 96.9 0.0011 3.8E-08 47.2 4.5 27 11-37 71-97 (281)
317 4a74_A DNA repair and recombin 96.9 0.00053 1.8E-08 46.9 2.8 22 17-38 27-48 (231)
318 2pjz_A Hypothetical protein ST 96.9 0.00064 2.2E-08 48.0 3.2 23 17-39 32-54 (263)
319 2jaq_A Deoxyguanosine kinase; 96.9 0.00066 2.3E-08 45.5 3.2 21 17-37 2-22 (205)
320 3cm0_A Adenylate kinase; ATP-b 96.9 0.00081 2.8E-08 44.5 3.5 23 15-37 4-26 (186)
321 3aez_A Pantothenate kinase; tr 96.9 0.00082 2.8E-08 48.7 3.7 26 12-37 87-112 (312)
322 1t9h_A YLOQ, probable GTPase E 96.9 0.0002 6.7E-09 51.8 0.4 24 16-39 174-197 (307)
323 1lw7_A Transcriptional regulat 96.9 0.00055 1.9E-08 50.6 2.8 24 15-38 170-193 (365)
324 1kht_A Adenylate kinase; phosp 96.9 0.00073 2.5E-08 44.8 3.2 22 16-37 4-25 (192)
325 2yv5_A YJEQ protein; hydrolase 96.8 0.00065 2.2E-08 48.9 3.1 23 16-39 166-188 (302)
326 1e4v_A Adenylate kinase; trans 96.8 0.00067 2.3E-08 46.1 3.0 22 16-37 1-22 (214)
327 3trf_A Shikimate kinase, SK; a 96.8 0.00074 2.5E-08 44.7 3.1 22 16-37 6-27 (185)
328 3fvq_A Fe(3+) IONS import ATP- 96.8 0.00063 2.2E-08 50.2 3.0 23 17-39 32-54 (359)
329 2qt1_A Nicotinamide riboside k 96.8 0.0011 3.8E-08 44.8 3.9 26 13-38 19-44 (207)
330 3jvv_A Twitching mobility prot 96.8 0.00067 2.3E-08 50.0 2.9 21 17-37 125-145 (356)
331 1aky_A Adenylate kinase; ATP:A 96.8 0.00084 2.9E-08 45.8 3.2 22 16-37 5-26 (220)
332 2f1r_A Molybdopterin-guanine d 96.8 0.00035 1.2E-08 46.1 1.3 22 17-38 4-25 (171)
333 3nh6_A ATP-binding cassette SU 96.8 0.0005 1.7E-08 49.6 2.1 23 17-39 82-104 (306)
334 1gvn_B Zeta; postsegregational 96.8 0.00095 3.3E-08 47.7 3.6 24 14-37 32-55 (287)
335 1z47_A CYSA, putative ABC-tran 96.8 0.00077 2.6E-08 49.7 3.1 23 17-39 43-65 (355)
336 2jeo_A Uridine-cytidine kinase 96.8 0.00093 3.2E-08 46.5 3.4 24 14-37 24-47 (245)
337 3tui_C Methionine import ATP-b 96.8 0.00084 2.9E-08 49.6 3.2 23 17-39 56-78 (366)
338 3rlf_A Maltose/maltodextrin im 96.8 0.00084 2.9E-08 49.9 3.2 23 17-39 31-53 (381)
339 2bbs_A Cystic fibrosis transme 96.8 0.00081 2.8E-08 48.2 3.0 22 17-38 66-87 (290)
340 2yyz_A Sugar ABC transporter, 96.8 0.00083 2.8E-08 49.6 3.1 23 17-39 31-53 (359)
341 2x8a_A Nuclear valosin-contain 96.8 0.00078 2.7E-08 47.8 2.9 21 18-38 47-67 (274)
342 2plr_A DTMP kinase, probable t 96.8 0.001 3.5E-08 44.8 3.4 22 16-37 5-26 (213)
343 1via_A Shikimate kinase; struc 96.8 0.00086 3E-08 44.0 2.9 21 17-37 6-26 (175)
344 2it1_A 362AA long hypothetical 96.8 0.00086 3E-08 49.5 3.2 23 17-39 31-53 (362)
345 1tev_A UMP-CMP kinase; ploop, 96.8 0.0011 3.6E-08 44.1 3.4 22 16-37 4-25 (196)
346 1zd8_A GTP:AMP phosphotransfer 96.8 0.00089 3.1E-08 45.9 3.1 22 16-37 8-29 (227)
347 1zak_A Adenylate kinase; ATP:A 96.7 0.00084 2.9E-08 45.9 2.9 22 16-37 6-27 (222)
348 1qf9_A UMP/CMP kinase, protein 96.7 0.0013 4.5E-08 43.6 3.8 22 16-37 7-28 (194)
349 3iij_A Coilin-interacting nucl 96.7 0.0011 3.9E-08 43.6 3.4 23 15-37 11-33 (180)
350 1odf_A YGR205W, hypothetical 3 96.7 0.0014 4.7E-08 47.0 4.0 26 12-37 28-53 (290)
351 3tqc_A Pantothenate kinase; bi 96.7 0.0013 4.3E-08 47.9 3.8 26 12-37 89-114 (321)
352 1v43_A Sugar-binding transport 96.7 0.00094 3.2E-08 49.5 3.2 23 17-39 39-61 (372)
353 1g29_1 MALK, maltose transport 96.7 0.00092 3.1E-08 49.6 3.1 23 17-39 31-53 (372)
354 2pt5_A Shikimate kinase, SK; a 96.7 0.0011 3.7E-08 43.1 3.2 21 17-37 2-22 (168)
355 1ixz_A ATP-dependent metallopr 96.7 0.00091 3.1E-08 46.6 2.9 21 18-38 52-72 (254)
356 1rz3_A Hypothetical protein rb 96.7 0.0013 4.5E-08 44.3 3.6 25 13-37 20-44 (201)
357 2gza_A Type IV secretion syste 96.7 0.00087 3E-08 49.5 2.9 24 16-39 176-199 (361)
358 3co5_A Putative two-component 96.7 0.0017 5.8E-08 41.3 3.9 23 16-38 28-50 (143)
359 1jbk_A CLPB protein; beta barr 96.7 0.0011 3.8E-08 43.6 3.1 23 15-37 43-65 (195)
360 2kjq_A DNAA-related protein; s 96.7 0.00061 2.1E-08 43.8 1.8 23 16-38 37-59 (149)
361 2xb4_A Adenylate kinase; ATP-b 96.7 0.0011 3.8E-08 45.4 3.2 21 17-37 2-22 (223)
362 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.00088 3E-08 48.9 2.8 23 17-39 173-195 (330)
363 1sq5_A Pantothenate kinase; P- 96.7 0.0013 4.5E-08 47.4 3.7 25 13-37 78-102 (308)
364 2v54_A DTMP kinase, thymidylat 96.7 0.0013 4.5E-08 44.1 3.4 23 16-38 5-27 (204)
365 2yvu_A Probable adenylyl-sulfa 96.7 0.0017 6E-08 43.0 3.9 24 14-37 12-35 (186)
366 1nn5_A Similar to deoxythymidy 96.6 0.0013 4.4E-08 44.5 3.2 23 15-37 9-31 (215)
367 2ewv_A Twitching motility prot 96.6 0.0011 3.8E-08 49.2 3.0 22 16-37 137-158 (372)
368 3d31_A Sulfate/molybdate ABC t 96.6 0.00078 2.7E-08 49.5 2.2 23 17-39 28-50 (348)
369 2c95_A Adenylate kinase 1; tra 96.6 0.0013 4.5E-08 43.7 3.2 22 16-37 10-31 (196)
370 1xjc_A MOBB protein homolog; s 96.6 0.0014 4.7E-08 43.2 3.1 22 16-37 5-26 (169)
371 3be4_A Adenylate kinase; malar 96.6 0.0011 3.8E-08 45.2 2.8 22 16-37 6-27 (217)
372 2ze6_A Isopentenyl transferase 96.6 0.0012 4.1E-08 46.2 3.0 21 17-37 3-23 (253)
373 1rj9_A FTSY, signal recognitio 96.6 0.0011 3.9E-08 47.7 2.9 63 87-160 220-282 (304)
374 2p5t_B PEZT; postsegregational 96.6 0.0012 4.2E-08 46.1 3.0 25 13-37 30-54 (253)
375 3gd7_A Fusion complex of cysti 96.6 0.0012 4.1E-08 49.3 3.0 21 17-37 49-69 (390)
376 1p9r_A General secretion pathw 96.6 0.0012 4E-08 49.8 2.9 22 17-38 169-190 (418)
377 2oap_1 GSPE-2, type II secreti 96.6 0.0012 4.1E-08 51.0 2.9 24 16-39 261-284 (511)
378 1in4_A RUVB, holliday junction 96.6 0.0012 4.3E-08 48.0 2.9 23 16-38 52-74 (334)
379 2z0h_A DTMP kinase, thymidylat 96.6 0.0014 4.8E-08 43.6 2.9 21 17-37 2-22 (197)
380 2pbr_A DTMP kinase, thymidylat 96.6 0.0015 5.3E-08 43.3 3.1 21 17-37 2-22 (195)
381 3umf_A Adenylate kinase; rossm 96.6 0.0024 8.2E-08 43.8 4.1 20 18-37 32-51 (217)
382 2bwj_A Adenylate kinase 5; pho 96.6 0.0014 4.8E-08 43.7 2.9 23 15-37 12-34 (199)
383 3b9q_A Chloroplast SRP recepto 96.5 0.0014 4.7E-08 47.3 2.9 23 15-37 100-122 (302)
384 1iy2_A ATP-dependent metallopr 96.5 0.0014 4.8E-08 46.4 2.9 21 18-38 76-96 (278)
385 1gtv_A TMK, thymidylate kinase 96.5 0.00056 1.9E-08 46.3 0.8 21 17-37 2-22 (214)
386 4e22_A Cytidylate kinase; P-lo 96.5 0.0017 5.7E-08 45.5 3.3 22 15-36 27-48 (252)
387 1e6c_A Shikimate kinase; phosp 96.5 0.0017 5.7E-08 42.4 3.0 22 16-37 3-24 (173)
388 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0019 6.4E-08 45.4 3.4 22 16-37 5-26 (260)
389 1oxx_K GLCV, glucose, ABC tran 96.5 0.00077 2.6E-08 49.6 1.4 23 17-39 33-55 (353)
390 1vht_A Dephospho-COA kinase; s 96.5 0.0021 7.2E-08 43.7 3.6 23 15-37 4-26 (218)
391 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0016 5.5E-08 44.4 2.9 21 17-37 25-45 (235)
392 2iyv_A Shikimate kinase, SK; t 96.5 0.0016 5.6E-08 43.0 2.8 22 16-37 3-24 (184)
393 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0014 4.8E-08 50.0 2.7 23 16-38 139-161 (460)
394 1zuh_A Shikimate kinase; alpha 96.4 0.0022 7.5E-08 41.7 3.2 22 16-37 8-29 (168)
395 3kta_A Chromosome segregation 96.4 0.002 6.8E-08 42.5 3.0 21 17-37 28-48 (182)
396 2p65_A Hypothetical protein PF 96.4 0.0014 4.8E-08 42.9 2.2 23 15-37 43-65 (187)
397 2vli_A Antibiotic resistance p 96.4 0.0013 4.3E-08 43.4 2.0 22 16-37 6-27 (183)
398 1uj2_A Uridine-cytidine kinase 96.4 0.0023 7.9E-08 44.6 3.4 25 13-37 20-44 (252)
399 2pez_A Bifunctional 3'-phospho 96.4 0.0026 8.7E-08 41.9 3.4 23 15-37 5-27 (179)
400 1nij_A Hypothetical protein YJ 96.4 0.0013 4.6E-08 47.6 2.2 24 15-38 4-27 (318)
401 3bos_A Putative DNA replicatio 96.4 0.0021 7.3E-08 44.0 3.1 23 15-37 52-74 (242)
402 1lv7_A FTSH; alpha/beta domain 96.4 0.002 6.7E-08 45.0 2.9 22 16-37 46-67 (257)
403 3e70_C DPA, signal recognition 96.4 0.0026 9E-08 46.3 3.7 87 66-165 214-306 (328)
404 3r20_A Cytidylate kinase; stru 96.4 0.0024 8.1E-08 44.3 3.2 24 14-37 8-31 (233)
405 2obl_A ESCN; ATPase, hydrolase 96.4 0.0021 7.1E-08 47.3 3.0 23 17-39 73-95 (347)
406 4eaq_A DTMP kinase, thymidylat 96.4 0.0032 1.1E-07 43.4 3.8 24 14-37 25-48 (229)
407 4dzz_A Plasmid partitioning pr 96.4 0.01 3.6E-07 39.6 6.3 85 64-156 76-162 (206)
408 2w58_A DNAI, primosome compone 96.3 0.0024 8.4E-08 42.8 3.1 22 16-37 55-76 (202)
409 3nwj_A ATSK2; P loop, shikimat 96.3 0.0023 7.9E-08 44.8 2.9 22 16-37 49-70 (250)
410 2og2_A Putative signal recogni 96.3 0.0023 7.9E-08 47.2 2.9 24 14-37 156-179 (359)
411 2grj_A Dephospho-COA kinase; T 96.3 0.0033 1.1E-07 42.2 3.5 26 12-37 9-34 (192)
412 2yhs_A FTSY, cell division pro 96.3 0.0023 7.8E-08 49.1 2.9 24 14-37 292-315 (503)
413 1cr0_A DNA primase/helicase; R 96.3 0.0022 7.6E-08 45.7 2.8 22 17-38 37-58 (296)
414 3n70_A Transport activator; si 96.3 0.0028 9.7E-08 40.3 3.0 26 14-39 23-48 (145)
415 1n0w_A DNA repair protein RAD5 96.3 0.0027 9.1E-08 43.7 2.9 22 17-38 26-47 (243)
416 2cvh_A DNA repair and recombin 96.2 0.0027 9.3E-08 43.0 2.9 21 17-37 22-42 (220)
417 1m7g_A Adenylylsulfate kinase; 96.2 0.0038 1.3E-07 42.3 3.4 23 15-37 25-47 (211)
418 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0032 1.1E-07 49.0 3.4 23 16-38 48-70 (538)
419 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.0036 1.2E-07 40.2 3.1 19 18-36 26-44 (149)
420 1ltq_A Polynucleotide kinase; 96.2 0.0029 1E-07 45.1 3.0 22 16-37 3-24 (301)
421 1p5z_B DCK, deoxycytidine kina 96.2 0.0022 7.4E-08 45.1 2.2 26 13-38 22-47 (263)
422 3syl_A Protein CBBX; photosynt 96.2 0.004 1.4E-07 44.5 3.5 25 13-37 65-89 (309)
423 2dpy_A FLII, flagellum-specifi 96.1 0.0031 1.1E-07 47.8 3.0 23 17-39 159-181 (438)
424 1njg_A DNA polymerase III subu 96.1 0.0033 1.1E-07 42.8 2.9 21 17-37 47-67 (250)
425 3euj_A Chromosome partition pr 96.1 0.0031 1.1E-07 48.3 2.9 21 17-37 31-51 (483)
426 1svm_A Large T antigen; AAA+ f 96.1 0.0031 1.1E-07 46.8 2.9 23 15-37 169-191 (377)
427 3zvl_A Bifunctional polynucleo 96.1 0.0058 2E-07 46.0 4.3 24 14-37 257-280 (416)
428 3ozx_A RNAse L inhibitor; ATP 96.1 0.0032 1.1E-07 48.9 3.0 22 17-38 27-48 (538)
429 3h4m_A Proteasome-activating n 96.1 0.0035 1.2E-07 44.3 3.0 24 15-38 51-74 (285)
430 3b60_A Lipid A export ATP-bind 96.1 0.0033 1.1E-07 49.3 3.1 23 17-39 371-393 (582)
431 2chg_A Replication factor C sm 96.1 0.0035 1.2E-07 42.1 2.9 21 17-37 40-60 (226)
432 3b9p_A CG5977-PA, isoform A; A 96.1 0.0033 1.1E-07 44.8 2.8 24 15-38 54-77 (297)
433 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0044 1.5E-07 43.1 3.3 23 15-37 39-61 (262)
434 3b5x_A Lipid A export ATP-bind 96.1 0.0038 1.3E-07 49.0 3.2 23 17-39 371-393 (582)
435 3t15_A Ribulose bisphosphate c 96.0 0.0049 1.7E-07 44.0 3.5 23 15-37 36-58 (293)
436 3j16_B RLI1P; ribosome recycli 96.0 0.0039 1.3E-07 49.2 3.2 22 17-38 105-126 (608)
437 3cf0_A Transitional endoplasmi 96.0 0.0039 1.3E-07 44.7 2.8 24 15-38 49-72 (301)
438 1tue_A Replication protein E1; 96.0 0.0032 1.1E-07 42.7 2.2 22 16-37 59-80 (212)
439 3qf7_A RAD50; ABC-ATPase, ATPa 96.0 0.0044 1.5E-07 45.8 3.1 19 18-36 26-44 (365)
440 1d2n_A N-ethylmaleimide-sensit 96.0 0.0065 2.2E-07 42.7 3.8 26 13-38 62-87 (272)
441 1l8q_A Chromosomal replication 96.0 0.0041 1.4E-07 44.9 2.8 22 16-37 38-59 (324)
442 4fcw_A Chaperone protein CLPB; 95.9 0.007 2.4E-07 43.2 3.9 24 15-38 47-70 (311)
443 3eie_A Vacuolar protein sortin 95.9 0.0073 2.5E-07 43.7 4.0 24 14-37 50-73 (322)
444 1nlf_A Regulatory protein REPA 95.9 0.0044 1.5E-07 43.9 2.8 21 17-37 32-52 (279)
445 3gmt_A Adenylate kinase; ssgci 95.9 0.006 2E-07 42.1 3.3 25 13-37 6-30 (230)
446 3bk7_A ABC transporter ATP-bin 95.9 0.005 1.7E-07 48.6 3.2 23 16-38 118-140 (607)
447 3ozx_A RNAse L inhibitor; ATP 95.9 0.0048 1.6E-07 48.0 3.0 23 17-39 296-318 (538)
448 2yl4_A ATP-binding cassette SU 95.9 0.0035 1.2E-07 49.3 2.2 23 17-39 372-394 (595)
449 2qby_A CDC6 homolog 1, cell di 95.8 0.0048 1.6E-07 45.2 2.8 23 15-37 45-67 (386)
450 1q3t_A Cytidylate kinase; nucl 95.8 0.0065 2.2E-07 41.9 3.3 26 12-37 13-38 (236)
451 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0058 2E-07 47.5 3.4 23 17-39 314-336 (538)
452 3qf4_B Uncharacterized ABC tra 95.8 0.0038 1.3E-07 49.1 2.4 23 17-39 383-405 (598)
453 3bk7_A ABC transporter ATP-bin 95.8 0.0056 1.9E-07 48.3 3.2 23 17-39 384-406 (607)
454 1sxj_E Activator 1 40 kDa subu 95.8 0.0044 1.5E-07 45.2 2.4 21 17-37 38-58 (354)
455 2qmh_A HPR kinase/phosphorylas 95.8 0.0062 2.1E-07 41.1 2.9 24 16-39 35-58 (205)
456 4a82_A Cystic fibrosis transme 95.8 0.0033 1.1E-07 49.3 1.8 23 17-39 369-391 (578)
457 1ofh_A ATP-dependent HSL prote 95.8 0.006 2E-07 43.5 3.0 23 15-37 50-72 (310)
458 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0085 2.9E-07 44.1 3.8 24 14-37 23-46 (359)
459 1fnn_A CDC6P, cell division co 95.7 0.0064 2.2E-07 44.7 3.1 22 17-38 46-67 (389)
460 4b4t_M 26S protease regulatory 95.7 0.0071 2.4E-07 45.7 3.3 24 14-37 214-237 (434)
461 3ake_A Cytidylate kinase; CMP 95.7 0.0073 2.5E-07 40.5 3.1 21 17-37 4-24 (208)
462 1sxj_C Activator 1 40 kDa subu 95.7 0.006 2E-07 44.4 2.8 22 17-38 48-69 (340)
463 3crm_A TRNA delta(2)-isopenten 95.7 0.0085 2.9E-07 43.5 3.6 22 16-37 6-27 (323)
464 3uc9_A Increased recombination 95.7 0.0057 1.9E-07 42.1 2.5 23 17-39 29-53 (233)
465 3qf4_A ABC transporter, ATP-bi 95.7 0.0045 1.6E-07 48.6 2.3 22 17-38 371-392 (587)
466 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.0062 2.1E-07 44.2 2.8 24 15-38 45-68 (322)
467 1c9k_A COBU, adenosylcobinamid 95.7 0.0076 2.6E-07 40.0 3.0 21 18-38 2-22 (180)
468 2dr3_A UPF0273 protein PH0284; 95.7 0.007 2.4E-07 41.6 3.0 21 17-37 25-45 (247)
469 3j16_B RLI1P; ribosome recycli 95.7 0.0068 2.3E-07 47.8 3.2 22 18-39 381-402 (608)
470 2px0_A Flagellar biosynthesis 95.6 0.0066 2.2E-07 43.6 2.8 85 64-159 183-273 (296)
471 4b4t_K 26S protease regulatory 95.6 0.0085 2.9E-07 45.2 3.3 23 15-37 206-228 (428)
472 3d3q_A TRNA delta(2)-isopenten 95.6 0.0075 2.6E-07 44.1 2.9 22 16-37 8-29 (340)
473 1pzn_A RAD51, DNA repair and r 95.6 0.0069 2.4E-07 44.5 2.8 23 16-38 132-154 (349)
474 2qgz_A Helicase loader, putati 95.5 0.0086 2.9E-07 43.2 3.1 23 15-37 152-174 (308)
475 4b4t_L 26S protease subunit RP 95.5 0.0094 3.2E-07 45.1 3.3 24 14-37 214-237 (437)
476 3qks_A DNA double-strand break 95.5 0.0098 3.3E-07 40.2 3.1 19 18-36 26-44 (203)
477 1sxj_D Activator 1 41 kDa subu 95.5 0.0083 2.9E-07 43.6 2.9 22 17-38 60-81 (353)
478 2v1u_A Cell division control p 95.5 0.0067 2.3E-07 44.5 2.4 23 15-37 44-66 (387)
479 3pfi_A Holliday junction ATP-d 95.5 0.01 3.5E-07 43.0 3.3 24 15-38 55-78 (338)
480 3exa_A TRNA delta(2)-isopenten 95.4 0.0095 3.2E-07 43.1 3.0 22 17-38 5-26 (322)
481 2qen_A Walker-type ATPase; unk 95.4 0.0091 3.1E-07 43.1 2.9 23 16-38 32-54 (350)
482 1vma_A Cell division protein F 95.4 0.0094 3.2E-07 43.0 2.9 85 65-160 188-284 (306)
483 3uk6_A RUVB-like 2; hexameric 95.4 0.0093 3.2E-07 43.7 3.0 22 16-37 71-92 (368)
484 3hws_A ATP-dependent CLP prote 95.4 0.013 4.5E-07 43.0 3.8 25 14-38 50-74 (363)
485 3a8t_A Adenylate isopentenyltr 95.4 0.0095 3.2E-07 43.5 2.9 22 16-37 41-62 (339)
486 2r62_A Cell division protease 95.4 0.0036 1.2E-07 43.9 0.7 21 17-37 46-66 (268)
487 2z4s_A Chromosomal replication 95.4 0.0089 3.1E-07 45.3 2.8 22 16-37 131-152 (440)
488 3pxg_A Negative regulator of g 95.4 0.0092 3.1E-07 45.6 2.9 23 15-37 201-223 (468)
489 2iw3_A Elongation factor 3A; a 95.4 0.011 3.8E-07 49.1 3.5 24 17-40 463-486 (986)
490 2bjv_A PSP operon transcriptio 95.4 0.011 3.6E-07 41.4 3.0 25 15-39 29-53 (265)
491 4b4t_J 26S protease regulatory 95.3 0.01 3.5E-07 44.4 3.0 23 15-37 182-204 (405)
492 1a7j_A Phosphoribulokinase; tr 95.3 0.0051 1.8E-07 44.0 1.3 23 15-37 5-27 (290)
493 1um8_A ATP-dependent CLP prote 95.3 0.011 3.9E-07 43.5 3.2 25 14-38 71-95 (376)
494 4ag6_A VIRB4 ATPase, type IV s 95.3 0.01 3.6E-07 44.0 3.1 24 14-37 34-57 (392)
495 2fna_A Conserved hypothetical 95.3 0.0095 3.2E-07 43.1 2.8 21 17-37 32-52 (357)
496 2dhr_A FTSH; AAA+ protein, hex 95.3 0.0096 3.3E-07 45.9 2.8 22 17-38 66-87 (499)
497 3v9p_A DTMP kinase, thymidylat 95.3 0.01 3.4E-07 40.9 2.7 25 13-37 23-47 (227)
498 3m6a_A ATP-dependent protease 95.3 0.0095 3.3E-07 46.4 2.8 22 16-37 109-130 (543)
499 3foz_A TRNA delta(2)-isopenten 95.3 0.016 5.3E-07 41.9 3.7 22 16-37 11-32 (316)
500 3u61_B DNA polymerase accessor 95.3 0.037 1.3E-06 39.8 5.8 21 18-38 51-71 (324)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.4e-41 Score=235.85 Aligned_cols=154 Identities=37% Similarity=0.670 Sum_probs=135.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
+.+.+||+|+|++++|||||+++|..+.|...+.+|.+.++....+..++..+.+.+||++|+++|..++..++++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++|||+++++||+.+..|+..+......++|++|||||+|+ .+.+.+..+++++++++++++|+||||++|.||
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl-~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV 163 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL-ADKRQVSIEEGERKAKELNVMFIETSAKAGYNV 163 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTC-GGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccch-HhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCH
Confidence 99999999999999999999998887789999999999999 566789999999999999999999999999986
No 2
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.2e-35 Score=201.95 Aligned_cols=161 Identities=53% Similarity=0.922 Sum_probs=143.3
Q ss_pred ccccCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccc
Q 031083 5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84 (166)
Q Consensus 5 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 84 (166)
+.......++.+||+++|++++|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+
T Consensus 12 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 91 (189)
T 2gf9_A 12 SGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAY 91 (189)
T ss_dssp --CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGG
T ss_pred cCCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHh
Confidence 33445567788999999999999999999999999988888888888888888888888999999999999999999999
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCC
Q 031083 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNN 164 (166)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (166)
++.+|++++|||++++.+++.+..|+..+......+.|+++|+||+|+ ...+.+..++++++++.++++++++||++|.
T Consensus 92 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 170 (189)
T 2gf9_A 92 YRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL-EDERVVPAEDGRRLADDLGFEFFEASAKENI 170 (189)
T ss_dssp GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-GGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc-ccccCCCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 999999999999999999999999999998876668999999999999 3445667788999999999999999999998
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
|+
T Consensus 171 gi 172 (189)
T 2gf9_A 171 NV 172 (189)
T ss_dssp SH
T ss_pred CH
Confidence 75
No 3
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=3.3e-36 Score=203.62 Aligned_cols=155 Identities=70% Similarity=1.184 Sum_probs=112.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
..++.+||+++|++++|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 35678999999999999999999999999888888998888888888889988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+ ...+.+..++++++++.++++++++||++|+||
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV-NDKRQVSKERGEKLALDYGIKFMETSAKANINV 158 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--C-CSCCCSCHHHHHHHHHHHTCEEEECCC---CCH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccC-CccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 999999999999999999999998876668999999999999 444567788899999999999999999999875
No 4
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=207.31 Aligned_cols=157 Identities=46% Similarity=0.838 Sum_probs=132.7
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
....++.+||+++|.+++|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 45567789999999999999999999999998888888888888888888999889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-eEEEEecccCCCC
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETVSMFNNEW 166 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 166 (166)
|++|+|||++++++++.+..|+..+......+.|+++|+||+|+ ...+.+..++++++++.+++ +++++||++|+||
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl-~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDL-SELREVSLAEAQSLAEHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-GGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcc-ccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence 99999999999999999999999998877678999999999999 34456778899999999999 9999999999875
No 5
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.3e-35 Score=202.29 Aligned_cols=157 Identities=48% Similarity=0.869 Sum_probs=138.8
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
.....+.+||+|+|++++|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 45578899999999999999999999999999888888888888888888999889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+ ...+.+..++++++++.++++++++||++|+||
T Consensus 95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL-ESRRDVKREEGEAFAREHGLIFMETSAKTACNV 171 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-GGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc-CCccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999999998877678999999999999 444567788899999999999999999999885
No 6
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.1e-36 Score=205.06 Aligned_cols=157 Identities=45% Similarity=0.848 Sum_probs=142.4
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
....++.+||+++|++++|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 34567889999999999999999999999999888889988888888899999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+ ...+.+..++++++++..+++++++||++|+||
T Consensus 100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv 176 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL-AERREVSQQRAEEFSEAQDMYYLETSAKESDNV 176 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG-GGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-ccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999999998877678999999999999 344567788899999999999999999999885
No 7
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.1e-35 Score=200.00 Aligned_cols=159 Identities=43% Similarity=0.797 Sum_probs=143.1
Q ss_pred ccCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 031083 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (166)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 86 (166)
++....++.+||+++|++++|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++
T Consensus 2 ~m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 81 (186)
T 2bme_A 2 HMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR 81 (186)
T ss_dssp --CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTST
T ss_pred CcccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHh
Confidence 34555678899999999999999999999999998888888888888888889998899999999999999999999999
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+ .....+..++++++++..+++++++||++|+||
T Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 160 (186)
T 2bme_A 82 GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL-DADREVTFLEASRFAQENELMFLETSALTGENV 160 (186)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG-GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc-ccccccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 9999999999999999999999999888776678999999999999 344567778899999999999999999999875
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=5.7e-35 Score=199.42 Aligned_cols=157 Identities=65% Similarity=1.101 Sum_probs=144.0
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
....++.+||+++|++++|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+
T Consensus 10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 34456789999999999999999999999999988899999889989999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+ .....+..++++++++.++++++++||++|.||
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 166 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNV 166 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc-ccccccCHHHHHHHHHHcCCcEEEEeCCCCCCH
Confidence 99999999999999999999999998887778999999999999 455667778899999999999999999999875
No 9
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=2.8e-35 Score=196.59 Aligned_cols=154 Identities=38% Similarity=0.753 Sum_probs=133.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
.++.+||+++|++++|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46789999999999999999999999998888888888888888888888899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++|||++++.+++.+..|+..+......+.|+++|+||+|+ ...+.+..++++++++.++++++++||++|+|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EKERHVSIQEAESYAESVGAKHYHTSAKQNKGI 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGG-GGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccc-ccccccCHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 99999999999999999999887766668999999999999 344567788899999999999999999999875
No 10
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.9e-35 Score=195.84 Aligned_cols=156 Identities=56% Similarity=0.967 Sum_probs=138.1
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
....+..+||+++|++++|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 82 (181)
T 3tw8_B 3 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGT 82 (181)
T ss_dssp ---CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTC
T ss_pred ccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccC
Confidence 44567889999999999999999999999998888889988889889999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+ .....+..+++..++...+++++++||++|.|+
T Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 83 HGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDD-PERKVVETEDAYKFAGQMGIQLFETSAKENVNV 158 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTC-GGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCC-chhcccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 999999999999999999999999877654 7899999999998 445567778899999999999999999999875
No 11
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=202.75 Aligned_cols=161 Identities=45% Similarity=0.856 Sum_probs=134.0
Q ss_pred ccccCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccc
Q 031083 5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84 (166)
Q Consensus 5 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 84 (166)
++..+.+.+..+||+++|.+++|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+
T Consensus 16 ~~~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 95 (192)
T 2il1_A 16 PRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 95 (192)
T ss_dssp ------CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHH
T ss_pred CCCCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHH
Confidence 33445667889999999999999999999999999888888888888888888999988999999999999999999999
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHh-CCeEEEEecccC
Q 031083 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY-GIKFFETVSMFN 163 (166)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~ 163 (166)
++.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+ ...+++..++++++++.+ +++++++||++|
T Consensus 96 ~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl-~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g 174 (192)
T 2il1_A 96 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC-ETDREITRQQGEKFAQQITGMRFCEASAKDN 174 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG-GGGCCSCHHHHHHHHHTSTTCEEEECBTTTT
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc-ccccccCHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 999999999999999999999999998888777778999999999999 444567778899999885 789999999999
Q ss_pred CCC
Q 031083 164 NEW 166 (166)
Q Consensus 164 ~~v 166 (166)
+||
T Consensus 175 ~gi 177 (192)
T 2il1_A 175 FNV 177 (192)
T ss_dssp BSH
T ss_pred CCH
Confidence 875
No 12
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.1e-34 Score=199.78 Aligned_cols=155 Identities=60% Similarity=1.042 Sum_probs=141.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
..++.+||+|+|++++|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 35678999999999999999999999999988888988888888888999988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+. ..+.+..+++.++++..+++++++||++|.||
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 158 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK-DKRVVEYDVAKEFADANKMPFLETSALDSTNV 158 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-cccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 9999999999999999999999988776789999999999994 44567778899999999999999999999875
No 13
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-34 Score=197.87 Aligned_cols=155 Identities=54% Similarity=0.964 Sum_probs=141.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
..++.+||+|+|.+++|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 35678999999999999999999999999888888888888888888889889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+ .....+..++++++++.++++++++||++|.||
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINV 158 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTC-TTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc-CcccccCHHHHHHHHHHCCCeEEEEECCCCCCH
Confidence 999999999999999999999998776668999999999999 444567788899999999999999999999986
No 14
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.3e-34 Score=195.23 Aligned_cols=155 Identities=37% Similarity=0.663 Sum_probs=140.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
.....+||+++|++++|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 35678999999999999999999999999988888888888888888889888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+ .....+..++++++++..+++++++||++|+|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDL-LDARKVTAEDAQTYAQENGLFFMETSAKTATNV 162 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTC-TTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcc-cccccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 999999999999999999999998877678999999999999 444567788899999999999999999999875
No 15
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=7.4e-35 Score=195.91 Aligned_cols=156 Identities=45% Similarity=0.854 Sum_probs=141.4
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
...++.+||+++|.+++|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 44678899999999999999999999999988888888888888888888988899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+ ...+.+..++++++++.++++++++||++|+||
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL-EAQRDVTYEEAKQFAEENGLLFLEASAKTGENV 165 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc-ccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999999999998877678999999999999 444567788899999999999999999999875
No 16
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-34 Score=193.42 Aligned_cols=153 Identities=39% Similarity=0.701 Sum_probs=139.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
+.+||+++|++++|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 36899999999999999999999999888888888888888888889989999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--cccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK--RAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|||++++.+++.+..|+..+......+.|+++|+||+|+.... ..+..++++++++.++++++++||++|.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENV 156 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999999988776789999999999995432 567778899999999999999999999875
No 17
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=8e-35 Score=194.14 Aligned_cols=153 Identities=41% Similarity=0.696 Sum_probs=139.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
.+.+||+++|++++|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999999988888888888888888888988999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|||++++.+++.+..|+..+......+.|+++|+||+|+. ....+..++++++++..+++++++||++|+|+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA-NKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc-cccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 99999999999999999999988766789999999999994 34566778899999999999999999999874
No 18
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6e-35 Score=199.14 Aligned_cols=158 Identities=35% Similarity=0.650 Sum_probs=140.4
Q ss_pred cCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 031083 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (166)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 87 (166)
+++..++.+||+++|++++|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++.
T Consensus 16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (192)
T 2fg5_A 16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG 95 (192)
T ss_dssp -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence 34556788999999999999999999999999888888888888888888888888999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|++++|||++++.+++.+..|+..+......+.|+++|+||+|+ ...+.+..++++++++.++++++++||++|.|+
T Consensus 96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 173 (192)
T 2fg5_A 96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL-SDIREVPLKDAKEYAESIGAIVVETSAKNAINI 173 (192)
T ss_dssp CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG-GGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc-ccccccCHHHHHHHHHHcCCEEEEEeCCCCcCH
Confidence 999999999999999999999999998877678999999999999 344567788999999999999999999999875
No 19
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.2e-35 Score=198.18 Aligned_cols=157 Identities=43% Similarity=0.807 Sum_probs=141.4
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
.+..++.+||+|+|.+++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (193)
T 2oil_A 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA 98 (193)
T ss_dssp -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 45577889999999999999999999999999888888888888888888888899999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+. ....+..++++.+++..+++++++||++|+||
T Consensus 99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (193)
T 2oil_A 99 VGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS-QAREVPTEEARMFAENNGLLFLETSALDSTNV 175 (193)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999999999987666689999999999994 34556778899999999999999999999875
No 20
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1.9e-34 Score=192.37 Aligned_cols=154 Identities=36% Similarity=0.660 Sum_probs=140.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
..+.+||+++|++++|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999998888888888888888888999889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++|||++++.+++.+..|+..+......+.|+++|+||+|+. ...++..++++.+++.++++++++||++|.|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i 156 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT-DVREVMERDAKDYADSIHAIFVETSAKNAINI 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc-cccccCHHHHHHHHHHcCCEEEEEeCCCCcCH
Confidence 999999999999999999999988767789999999999994 44567778899999999999999999999874
No 21
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=4.7e-35 Score=203.01 Aligned_cols=159 Identities=21% Similarity=0.488 Sum_probs=132.7
Q ss_pred ccccCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccc
Q 031083 5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84 (166)
Q Consensus 5 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 84 (166)
+++........+||+++|++++|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+
T Consensus 17 q~~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 95 (214)
T 3q3j_B 17 QGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLC 95 (214)
T ss_dssp ----------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGG
T ss_pred hccCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHH
Confidence 445556667889999999999999999999999999988888888665 4566778888999999999999999999999
Q ss_pred cccccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CcccchHHHHHHHHHhC
Q 031083 85 YRGAMGILLVYDVTDESSFNN-IRNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYG 152 (166)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piivv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~ 152 (166)
++++|++|+|||++++.+++. +..|+..+.... .+.|+++|+||+|+.++ .+.+..++++++++.++
T Consensus 96 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 174 (214)
T 3q3j_B 96 YSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG 174 (214)
T ss_dssp CTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred cCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC
Confidence 999999999999999999998 688888887765 48999999999999543 36688899999999999
Q ss_pred C-eEEEEecccCCC
Q 031083 153 I-KFFETVSMFNNE 165 (166)
Q Consensus 153 ~-~~~~~Sa~~~~~ 165 (166)
+ +|++|||++|.|
T Consensus 175 ~~~~~e~SA~~g~g 188 (214)
T 3q3j_B 175 AEIYLEGSAFTSEK 188 (214)
T ss_dssp CSEEEECCTTTCHH
T ss_pred CCEEEEeccCCCcc
Confidence 9 999999999976
No 22
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.7e-35 Score=200.94 Aligned_cols=156 Identities=42% Similarity=0.779 Sum_probs=130.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
+..++.+||+|+|++++|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 44678899999999999999999999999988888888888888888889998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+ .....+..+++.++++..+++++++||++|+||
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl-~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi 175 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL-DPEREVTFLEASRFAQENELMFLETSALTGENV 175 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGG-GGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCc-ccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999999999998776678999999999999 444567778899999999999999999999885
No 23
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=8.4e-35 Score=194.16 Aligned_cols=151 Identities=61% Similarity=1.085 Sum_probs=132.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
+.+||+++|++++|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 56899999999999999999999999888888888888888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|||++++.+++.+..|+..+......+.|+++|+||+|+ ....+..++++++++.++++++++||++|+||
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 152 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM--ETRVVTADQGEALAKELGIPFIESSAKNDDNV 152 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC--TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC--CcCccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 999999999999999999998877678999999999999 34556778899999999999999999999875
No 24
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.1e-34 Score=192.66 Aligned_cols=156 Identities=49% Similarity=0.906 Sum_probs=132.0
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
...+..+||+++|.+++|||||+++|.++.+. ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34577899999999999999999999998885 46678888888877788899889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+. ....+..++++++++.++++++++||++|+||
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA-HERVVKREDGEKLAKEYGLPFMETSAKTGLNV 161 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT-SCCCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC-cccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 999999999999999999999999988766789999999999994 34566778899999999999999999999875
No 25
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=4e-34 Score=193.37 Aligned_cols=157 Identities=32% Similarity=0.522 Sum_probs=138.7
Q ss_pred cCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 031083 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (166)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 87 (166)
......+.+||+++|++++|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..+++.
T Consensus 11 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 89 (183)
T 3kkq_A 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89 (183)
T ss_dssp ---CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHH
T ss_pred CCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhc
Confidence 344567789999999999999999999999998888888887666 6777889999999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecc-cCCC
Q 031083 88 AMGILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSM-FNNE 165 (166)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~ 165 (166)
+|++++|||++++.+++.+..|+..+... ...+.|+++|+||+|+ .+.+.+..++++++++.++++|+++||+ +|+|
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLN 168 (183)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC-STTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBS
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCc-hhccCcCHHHHHHHHHHhCCeEEEeccCCCCCC
Confidence 99999999999999999999999988663 3458899999999999 4456788899999999999999999999 9987
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
|
T Consensus 169 v 169 (183)
T 3kkq_A 169 V 169 (183)
T ss_dssp H
T ss_pred H
Confidence 5
No 26
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.3e-34 Score=196.92 Aligned_cols=156 Identities=42% Similarity=0.787 Sum_probs=137.6
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccc-cccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGA 88 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~ 88 (166)
......+||+++|.+++|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++++. .++..+++.+
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 445678999999999999999999999999988888888888888888899988999999999999888 7888899999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccC---C
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFN---N 164 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~ 164 (166)
|++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+ ...+++..++++.+++.++++++++||++| +
T Consensus 95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~ 173 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL-RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND 173 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTC-GGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc-cccceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence 99999999999999999999999987765 458999999999999 444567788899999999999999999999 6
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
||
T Consensus 174 ~i 175 (189)
T 1z06_A 174 HV 175 (189)
T ss_dssp CH
T ss_pred CH
Confidence 63
No 27
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.5e-35 Score=200.82 Aligned_cols=157 Identities=44% Similarity=0.760 Sum_probs=128.3
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
...+..+||+|+|++++|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 44567899999999999999999999999988888888888888888889999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-----CCcccchHHHHHHHHHhCCeEEEEecccCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE-----SKRAVPTAKGQELADEYGIKFFETVSMFNN 164 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (166)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ..+.+..++++++++.++++++++||++|+
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 999999999999999999999988877666899999999999952 345677888999999999999999999998
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
||
T Consensus 183 gv 184 (199)
T 2p5s_A 183 NI 184 (199)
T ss_dssp TH
T ss_pred CH
Confidence 85
No 28
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=3e-34 Score=193.64 Aligned_cols=153 Identities=29% Similarity=0.466 Sum_probs=136.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
....+||+++|.+++|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 35679999999999999999999999888888888887666 67778899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+ ...+.+..++++++++.++++|+++||++|.||
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAESWNAAFLESSAKENQTA 156 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTC-TTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc-hhcceecHHHHHHHHHHhCCcEEEEecCCCCCH
Confidence 99999999999999999998886654 347899999999999 556778889999999999999999999998764
No 29
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=8.5e-35 Score=199.04 Aligned_cols=156 Identities=26% Similarity=0.366 Sum_probs=130.6
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccc-ccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGA 88 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~ 88 (166)
.+....+||+++|++++|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++.+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 4456789999999999999999999986544434445555666777788899999999999999987765 777888999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+ ...+.+..++++++++.++++|+++||++|.||
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl-~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL-ARSREVSLEEGRHLAGTLSCKHIETSAALHHNT 175 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTC-TTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhc-cccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence 999999999999999999999998877553 47899999999999 445667788999999999999999999999885
No 30
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.1e-36 Score=203.85 Aligned_cols=157 Identities=55% Similarity=0.979 Sum_probs=142.8
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
.+..++.+||+|+|.+++|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence 34467889999999999999999999999998888888888788888888888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+ ...+.+..++++.+++.++++++++||++|.||
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 173 (191)
T 3dz8_A 97 MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDM-EEERVVPTEKGQLLAEQLGFDFFEASAKENISV 173 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-ccccccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 99999999999999999999999998877678999999999999 445667788899999999999999999999885
No 31
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2.6e-34 Score=191.46 Aligned_cols=152 Identities=34% Similarity=0.646 Sum_probs=137.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
++.+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 56799999999999999999999999988888888888888888888988899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+. ..+.+..++++++++.++++++++||++|.|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLL-DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNV 154 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCEEEECBTTTTBSS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccC-cccccCHHHHHHHHHHcCCeEEEEecCCCCCH
Confidence 9999999999999999999887765 578999999999994 34556778899999999999999999999986
No 32
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=3.4e-34 Score=192.68 Aligned_cols=154 Identities=38% Similarity=0.682 Sum_probs=139.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
+...+||+++|++++|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 34679999999999999999999999999888888888888888899999989999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++|||++++.+++.+..|+..+......+.|+++|+||+|+. +...+..++++.+++..+++++++||++|+|+
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 164 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS-DKRQVSTEEGERKAKELNVMFIETSAKAGYNV 164 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG-GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 999999999999999999999887766789999999999994 44566778899999999999999999999874
No 33
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2e-34 Score=195.93 Aligned_cols=154 Identities=27% Similarity=0.443 Sum_probs=129.6
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
......+||+++|++++|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..+ ..+++.+|
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 3456789999999999999999999999998888888887655 456778888999999999999988775 56889999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEec-ccCCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQHAA---DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVS-MFNNE 165 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~ 165 (166)
++++|||++++++++.+..|+..+..... .+.|+++|+||+|+ ...+.+..++++++++.++++|+++|| ++|+|
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl-~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~g 172 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM-AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEH 172 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGG-GGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcch-hhcCccCHHHHHHHHHHcCCcEEEEeecCcccc
Confidence 99999999999999999999998876542 57899999999999 445667888999999999999999999 89876
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
|
T Consensus 173 v 173 (187)
T 3c5c_A 173 V 173 (187)
T ss_dssp H
T ss_pred H
Confidence 4
No 34
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=200.10 Aligned_cols=155 Identities=51% Similarity=0.880 Sum_probs=132.4
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
..++.+||+|+|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|+
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 35778999999999999999999999999988888888888888888899988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|+|||++++.+++.+..|+..+......+.|++||+||+|+. ..+.+..+++.++++.++++++++||++|+||
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA-HLRAVPTEESKTFAQENQLLFTETSALNSENV 163 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG-GGCCSCHHHHHHHHHHTTCEEEECCCC-CCCH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999999999987766689999999999994 34567778899999999999999999999875
No 35
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=7.4e-34 Score=192.71 Aligned_cols=151 Identities=19% Similarity=0.341 Sum_probs=130.6
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
.......+||+++|++|+|||||++++.++.+...+.++.+ .+...+.+++..+.+.+||++|++.+. +++.+
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 34567789999999999999999999999998887777743 344788889999999999999998776 78889
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC-CCCcccchHHHHHHHHHhC-CeEEEEecccCCC
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMD-ESKRAVPTAKGQELADEYG-IKFFETVSMFNNE 165 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~~K~Dl~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 165 (166)
|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ...+.+..++++++++.++ ++|+++||++|+|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 999999999999999999999999977543 478999999999995 3456678899999999997 8999999999988
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
|
T Consensus 167 v 167 (184)
T 3ihw_A 167 V 167 (184)
T ss_dssp H
T ss_pred H
Confidence 5
No 36
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.4e-34 Score=194.66 Aligned_cols=154 Identities=32% Similarity=0.554 Sum_probs=134.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECC-eEEEEEEEeCCCccccccccccccccccE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
..+.+||+++|++++|||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45679999999999999999999999988877788888788888888876 67899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC--CCCc-EEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQHAA--DNVN-KILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-iivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+++|||++++++++.+..|+..+..... .+.| +++|+||+|+ ...+.+..++++++++.++++++++||++|+||
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 160 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDL-EHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSV 160 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGG-GGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccc-ccccccCHHHHHHHHHHcCCcEEEEeCCCCCCH
Confidence 9999999999999999999888866432 1344 8999999999 344567778899999999999999999999875
No 37
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=6.5e-34 Score=191.60 Aligned_cols=155 Identities=32% Similarity=0.558 Sum_probs=136.9
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
.+....+||+++|.+|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||+||++++..++..+++.+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 34567899999999999999999999999988888888876655 67788888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++++|||++++.+++.+..|+..+.+ ....+.|+++|+||+|+ ...+.+..++++.+++..+++++++||++|+||
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL-ESQRQVPRSEASAFGASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG-GGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc-ccccccCHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 99999999999999999999988854 34558899999999999 444567788899999999999999999999875
No 38
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=9.8e-34 Score=195.67 Aligned_cols=155 Identities=61% Similarity=1.082 Sum_probs=138.1
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
...+..++|+|+|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 34566799999999999999999999999988888888888888888899998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+ ....+..++++++++.++++++++||++|+||
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM--ETRVVTADQGEALAKELGIPFIESSAKNDDNV 169 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC--SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC--cccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999999999998877668999999999999 34556778889999999999999999999986
No 39
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=3.4e-34 Score=193.15 Aligned_cols=156 Identities=40% Similarity=0.686 Sum_probs=124.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccccc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
.....+||+++|++|+|||||++++.+..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 34678999999999999999999999999888888888878887888776 55688999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCcccchHHHHHHHH-HhCCeEEEEecccCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKADMDESKRAVPTAKGQELAD-EYGIKFFETVSMFNN 164 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 164 (166)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+......+..++++++++ ..+++++++||++|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 99999999999999999999998876543 5789999999999966666677888999998 456899999999998
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
||
T Consensus 164 gi 165 (182)
T 1ky3_A 164 NV 165 (182)
T ss_dssp SH
T ss_pred CH
Confidence 75
No 40
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.3e-33 Score=192.68 Aligned_cols=155 Identities=29% Similarity=0.583 Sum_probs=135.0
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
......+||+++|.+++|||||++++.++.+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..+++++|
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 44677899999999999999999999999998888888876655 56778888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CcccchHHHHHHHHHhCCe-EEEEecccCCCC
Q 031083 90 GILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDES-KRAVPTAKGQELADEYGIK-FFETVSMFNNEW 166 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~~K~Dl~~~-~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v 166 (166)
++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.++ .+.+..++++++++.+++. ++++||++|+||
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL 175 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence 99999999999999997 56777776554 47899999999999543 4667889999999999998 999999999885
No 41
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.4e-33 Score=189.61 Aligned_cols=153 Identities=38% Similarity=0.684 Sum_probs=134.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
....+||+++|++++|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 46789999999999999999999999998888888888888888889999889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCcccchHHHHHHHH-HhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKADMDESKRAVPTAKGQELAD-EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v 166 (166)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ...+..++++++++ ..+++++++||++|+|+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 999999999999999999998876543 578999999999994 45677888999998 55689999999999885
No 42
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.7e-34 Score=200.30 Aligned_cols=156 Identities=50% Similarity=0.944 Sum_probs=137.1
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCe----------EEEEEEEeCCCcccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGK----------RIKLQIWDTAGQERFRT 79 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~ 79 (166)
...++.+||+|+|.+++|||||+++|.++.+...+.++.+.++....+.+++. .+.+.+||+||++.+..
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 44678899999999999999999999999998888888888887777777765 78999999999999999
Q ss_pred ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEE
Q 031083 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFET 158 (166)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (166)
.+..+++.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+ .....+..++++++++.++++++++
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl-~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADL-PDQREVNERQARELADKYGIPYFET 178 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTC-GGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcc-ccccccCHHHHHHHHHHCCCcEEEE
Confidence 999999999999999999999999999999888765443 57899999999999 4445677888999999999999999
Q ss_pred ecccCCCC
Q 031083 159 VSMFNNEW 166 (166)
Q Consensus 159 Sa~~~~~v 166 (166)
||++|+||
T Consensus 179 Sa~~g~gi 186 (217)
T 2f7s_A 179 SAATGQNV 186 (217)
T ss_dssp BTTTTBTH
T ss_pred ECCCCCCH
Confidence 99999875
No 43
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=9.6e-34 Score=189.05 Aligned_cols=151 Identities=26% Similarity=0.374 Sum_probs=120.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccc-ccccccccccEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGILL 93 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~ 93 (166)
.+||+++|++++|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998777666666666777888888999999999999999998876 67778899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|||++++++++.+..|+..+..... .+.|+++|+||+|+ .+...+..++++++++.++++++++||++|.||
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL-ARSREVSLEEGRHLAGTLSCKHIETSAALHHNT 154 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTC-GGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcch-hhcccCCHHHHHHHHHHcCCcEEEecCccCCCH
Confidence 9999999999999999999877654 47899999999999 445678889999999999999999999999885
No 44
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.4e-33 Score=191.96 Aligned_cols=155 Identities=51% Similarity=0.936 Sum_probs=137.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeE-EEEEEECCe---------EEEEEEEeCCCccccccc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFK-IRTIELDGK---------RIKLQIWDTAGQERFRTI 80 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~~~~~ 80 (166)
..++.+||+|+|++++|||||+++|.++.+...+.++.+.++. ...+..++. .+.+.+||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4577899999999999999999999999988888888887777 666677665 789999999999999999
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEe
Q 031083 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETV 159 (166)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (166)
+..+++.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+ .....+..++++++++.++++++++|
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDL-EDQRAVKEEEARELAEKYGIPYFETS 165 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTC-GGGCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc-ccccccCHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999877654 58899999999999 34456677889999999999999999
Q ss_pred cccCCCC
Q 031083 160 SMFNNEW 166 (166)
Q Consensus 160 a~~~~~v 166 (166)
|++|.||
T Consensus 166 a~~~~~v 172 (195)
T 3bc1_A 166 AANGTNI 172 (195)
T ss_dssp TTTCTTH
T ss_pred CCCCCCH
Confidence 9999875
No 45
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-33 Score=191.91 Aligned_cols=154 Identities=27% Similarity=0.577 Sum_probs=134.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
+.++.+||+++|++++|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++++|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 345789999999999999999999999988888888876554 4567778888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CcccchHHHHHHHHHhCC-eEEE
Q 031083 91 ILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFE 157 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~ 157 (166)
+++|||++++++++.+. .|+..+..... +.|+++|+||+|+.+. .+.+..+++.++++.+++ +|++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 171 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE 171 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence 99999999999999997 78888877644 7899999999999553 246778899999999998 9999
Q ss_pred EecccCCCC
Q 031083 158 TVSMFNNEW 166 (166)
Q Consensus 158 ~Sa~~~~~v 166 (166)
+||++|+||
T Consensus 172 ~Sa~~g~gi 180 (194)
T 2atx_A 172 CSALTQKGL 180 (194)
T ss_dssp CCTTTCTTH
T ss_pred eeCCCCCCH
Confidence 999999875
No 46
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=192.29 Aligned_cols=156 Identities=29% Similarity=0.546 Sum_probs=126.0
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
.......+||+++|.+++|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++++..++..+++++
T Consensus 14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 34567889999999999999999999999988888788776444 46677888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CcccchHHHHHHHHHhCC-eE
Q 031083 89 MGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KF 155 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~ 155 (166)
|++++|||++++.+++.+. .|+..+..... +.|+++|+||+|+... ...+..+++..+++.+++ +|
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY 171 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 9999999999999999997 68888877654 7899999999999543 356778889999999997 99
Q ss_pred EEEecccCCCC
Q 031083 156 FETVSMFNNEW 166 (166)
Q Consensus 156 ~~~Sa~~~~~v 166 (166)
+++||++|.||
T Consensus 172 ~~~Sa~~g~gi 182 (201)
T 2q3h_A 172 IECSALTQKNL 182 (201)
T ss_dssp EECCTTTCTTH
T ss_pred EEEecCCCCCH
Confidence 99999999875
No 47
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.8e-34 Score=194.90 Aligned_cols=155 Identities=28% Similarity=0.483 Sum_probs=130.2
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
.+....+||+|+|.+++|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..+++.+|
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 4456789999999999999999999999999888888887665 566677777789999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++++|||++++++++.+..|+..+.... ..+.|+++|+||+|+ .....+..++++.+++.++++++++||++|.||
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL-SPEREVQAVEGKKLAESWGATFMESSARENQLT 174 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTC-GGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccC-ccccccCHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence 9999999999999999999999986643 347899999999999 445667888899999999999999999999764
No 48
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-33 Score=191.54 Aligned_cols=157 Identities=45% Similarity=0.823 Sum_probs=139.8
Q ss_pred cCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 031083 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (166)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 87 (166)
+.......+||+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.
T Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (195)
T 1x3s_A 8 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG 87 (195)
T ss_dssp -CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTT
T ss_pred cccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 34445678999999999999999999999999988888888888888888899999999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+. ...+..+++.++++.++++++++||++|+||
T Consensus 88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCDGV 165 (195)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc--ccccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 999999999999999999999999887654 3478999999999993 3456778899999999999999999999874
No 49
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-33 Score=194.87 Aligned_cols=158 Identities=24% Similarity=0.557 Sum_probs=131.5
Q ss_pred ccCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 031083 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (166)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 86 (166)
.+.......+||+++|++++|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.|..++..+++
T Consensus 20 ~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 98 (205)
T 1gwn_A 20 HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP 98 (205)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred CCCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhcc
Confidence 3444567889999999999999999999999999888888877655 356677888899999999999999999999999
Q ss_pred cccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CcccchHHHHHHHHHhC-C
Q 031083 87 GAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYG-I 153 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~-~ 153 (166)
++|++|+|||++++.+++.+ ..|+..+.+.. .+.|+++|+||+|+.++ .+.+..++++++++.++ +
T Consensus 99 ~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 177 (205)
T 1gwn_A 99 DSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA 177 (205)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCC
Confidence 99999999999999999998 67888887654 47899999999999542 24577888999999998 6
Q ss_pred eEEEEecc-cCCCC
Q 031083 154 KFFETVSM-FNNEW 166 (166)
Q Consensus 154 ~~~~~Sa~-~~~~v 166 (166)
+|+++||+ +|.||
T Consensus 178 ~~~e~SAk~~~~gv 191 (205)
T 1gwn_A 178 TYIECSALQSENSV 191 (205)
T ss_dssp EEEECCTTTCHHHH
T ss_pred EEEEeeeccCCcCH
Confidence 99999999 56653
No 50
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=5e-33 Score=190.56 Aligned_cols=152 Identities=33% Similarity=0.576 Sum_probs=134.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeE---------------------------
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR--------------------------- 63 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 63 (166)
+.++.+||+|+|++++|||||+++|.+..+...+.++.+.++....+.+++..
T Consensus 3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp CCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence 34677999999999999999999999999988888888888887777777655
Q ss_pred ----------EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031083 64 ----------IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (166)
Q Consensus 64 ----------~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~ 133 (166)
+.+.+||+||++.+...+..+++.+|++++|||++++.+++.+..|+..+..... .|+++|+||+|+
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D~- 159 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKIDK- 159 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTTC-
T ss_pred cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCCc-
Confidence 8899999999999999999999999999999999999999999999998877653 899999999993
Q ss_pred CCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 134 ESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
....+..++++++++.++++++++||++|+||
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 191 (208)
T 3clv_A 160 -NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNI 191 (208)
T ss_dssp -C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred -ccccCCHHHHHHHHHHcCCcEEEEecCCCCCH
Confidence 44567788999999999999999999999875
No 51
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=1.8e-33 Score=190.60 Aligned_cols=154 Identities=25% Similarity=0.573 Sum_probs=131.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
..+..+||+++|++++|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 3567899999999999999999999999988888888775553 566778888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CcccchHHHHHHHHHhC-CeEEE
Q 031083 91 ILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYG-IKFFE 157 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~ 157 (166)
+++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.++ .+.+..++++++++.++ ++|++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 160 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 160 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999999998 67888886654 47899999999999542 25577889999999998 69999
Q ss_pred Eecc-cCCCC
Q 031083 158 TVSM-FNNEW 166 (166)
Q Consensus 158 ~Sa~-~~~~v 166 (166)
+||+ +|.||
T Consensus 161 ~Sa~~~~~gi 170 (184)
T 1m7b_A 161 CSALQSENSV 170 (184)
T ss_dssp CBTTTBHHHH
T ss_pred eeecCCCcCH
Confidence 9998 56653
No 52
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=5.5e-33 Score=190.91 Aligned_cols=154 Identities=32% Similarity=0.563 Sum_probs=135.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
+....+||+|+|++++|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 345679999999999999999999999988888888776544 4667788888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+++|||++++++++.+..|+..+..... .+.|+++|+||+|+ .....+..+++.++++.++++++++||++|+||
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 164 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTC-GGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCc-cccccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence 9999999999999999999998877553 47899999999999 344567788999999999999999999999875
No 53
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=3.6e-33 Score=192.04 Aligned_cols=153 Identities=35% Similarity=0.670 Sum_probs=135.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
..+.+||+|+|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 46789999999999999999999999999888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCcccchHHHHHHHH-HhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKADMDESKRAVPTAKGQELAD-EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v 166 (166)
|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ...+..+++..+++ ..+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS--CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 999999999999999999988866542 478999999999994 45566788888888 66789999999999875
No 54
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=203.82 Aligned_cols=156 Identities=65% Similarity=1.107 Sum_probs=132.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
...++.+||+|+|.+++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|
T Consensus 28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 107 (199)
T 3l0i_B 28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 107 (199)
T ss_dssp CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence 44577899999999999999999999999998888888888888899999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+ .....+..++++.+++.++++++++||++|.||
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl-~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv 183 (199)
T 3l0i_B 108 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNV 183 (199)
T ss_dssp EEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSC-C--CCCCSCC-CHHHHTTTCCBCCCCC---HHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccC-CccccCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 9999999999999999999999998776678999999999999 444556667789999999999999999999874
No 55
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=3.5e-34 Score=197.09 Aligned_cols=155 Identities=23% Similarity=0.462 Sum_probs=101.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC--CCCCCccccceeEeEEEEEEECCe--EEEEEEEeCCCcccccccccccccc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD--SFTTSFITTIGIDFKIRTIELDGK--RIKLQIWDTAGQERFRTITTAYYRG 87 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~ 87 (166)
....+||+|+|++++|||||+++|.++ .+...+.++.+.++....+.+++. .+.+.+||+||++.+...+..+++.
T Consensus 17 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 96 (208)
T 2yc2_C 17 ATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNG 96 (208)
T ss_dssp EEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhh
Confidence 356799999999999999999999998 777788888877788888888877 8899999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEeccc-C
Q 031083 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAA---DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMF-N 163 (166)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~ 163 (166)
+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+..+.+..++++++++.++++++++||++ |
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (208)
T 2yc2_C 97 VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPG 176 (208)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC----
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCC
Confidence 9999999999999999999999999988765 68999999999999442566778899999999999999999999 9
Q ss_pred CCC
Q 031083 164 NEW 166 (166)
Q Consensus 164 ~~v 166 (166)
.||
T Consensus 177 ~gi 179 (208)
T 2yc2_C 177 KDA 179 (208)
T ss_dssp ---
T ss_pred cCH
Confidence 875
No 56
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=3.7e-33 Score=185.68 Aligned_cols=151 Identities=32% Similarity=0.577 Sum_probs=132.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
+.+||+++|.+++|||||++++.++.+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..+++++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999999988888888775543 566778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHh-CCeEEEEecccCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEY-GIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v 166 (166)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+. ..+.+..++++++++.+ +++++++||++|+|+
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE-DERVVGKEQGQNLARQWCNCAFLESSAKSKINV 154 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc-ccccCCHHHHHHHHHHccCCcEEEecCCCCCCH
Confidence 999999999999999998887643 4588999999999994 44566788899999998 789999999999875
No 57
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=5.2e-33 Score=186.34 Aligned_cols=152 Identities=30% Similarity=0.431 Sum_probs=120.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc--cccccccccccccE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTITTAYYRGAMG 90 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~d~ 90 (166)
.+.+||+++|++++|||||+++|.+..+...+. +.+.++....+.+++..+.+.+||++|++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 457999999999999999999999988755433 345566677788899889999999999887 55666778899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+ ...+.+..++++.++..++++++++||++|+||
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL-ARCREVSVEEGRACAVVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTC-TTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhh-ccccccCHHHHHHHHHHcCCeEEEEecCCCCCH
Confidence 999999999999999999998887642 347899999999999 444567778889999999999999999999885
No 58
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=7.9e-33 Score=186.21 Aligned_cols=147 Identities=22% Similarity=0.352 Sum_probs=124.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
.+.+||+++|++++|||||+++|.++.+.. +.++.+.. +...+.+++..+.+.+||++|+++ ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 467999999999999999999999998876 66776643 457778888889999999999876 45788899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCC-CCcccchHHHHHHHHHh-CCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADMDE-SKRAVPTAKGQELADEY-GIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piivv~~K~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v 166 (166)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.. ..+.+..++++++++.+ +++++++||++|+||
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 156 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV 156 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence 9999999999999999876665432 35789999999999953 45567888999999987 689999999999875
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=4.4e-33 Score=185.07 Aligned_cols=150 Identities=35% Similarity=0.586 Sum_probs=132.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
.+||+++|++++|||||++++.++.+...+.++.+. .....+.+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 589999999999999999999999888777777664 3457778888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+ ....++..++++++++.++++++++||++|+|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 153 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL-ESEREVSSSEGRALAEEWGCPFMETSAKSKTMV 153 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG-GGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc-cccccCCHHHHHHHHHHhCCCEEEecCCCCcCH
Confidence 99999999999999998887654 357899999999999 344567778899999999999999999998764
No 60
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=6.1e-33 Score=184.52 Aligned_cols=151 Identities=32% Similarity=0.584 Sum_probs=130.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
..+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++..++..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 368999999999999999999999988877777776544 3566788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|||++++++++.+..|+..+..... .+.|+++|+||+|+. ....+..++++++++.++++++++||++|+||
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRADQWNVNYVETSAKTRANV 154 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc-ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCH
Confidence 9999999999999999998877554 478999999999994 34557788999999999999999999999875
No 61
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.7e-33 Score=191.66 Aligned_cols=155 Identities=25% Similarity=0.379 Sum_probs=126.0
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCC--CCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc-cccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYR 86 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~ 86 (166)
......+||+++|.+++|||||+++|.+.. +...+ ++.+.++....+.+++..+.+.+||++|++. +..+...+++
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~ 110 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ 110 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHh
Confidence 345667999999999999999999999643 33333 3355566677788899999999999999876 4556677888
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCC
Q 031083 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNE 165 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (166)
.+|++|+|||++++++|+.+..|+..+.+. ...+.|+++|+||+|+. ..+.+..++++.++..++++|+++||++|+|
T Consensus 111 ~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~-~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~ 189 (211)
T 2g3y_A 111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEGRACAVVFDCKFIETSAAVQHN 189 (211)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh-cCceEeHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999999999999999998888653 23478999999999993 4456777888899999999999999999998
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
|
T Consensus 190 v 190 (211)
T 2g3y_A 190 V 190 (211)
T ss_dssp H
T ss_pred H
Confidence 5
No 62
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1.2e-32 Score=189.00 Aligned_cols=156 Identities=30% Similarity=0.589 Sum_probs=133.5
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
.......+||+++|.+++|||||++++.++.+...+.++.+..+. ..+.+++..+.+.+||+||++++..++..+++.+
T Consensus 19 ~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 97 (201)
T 2gco_A 19 SHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97 (201)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCC
Confidence 344678899999999999999999999999988888888776655 4467888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------cccchHHHHHHHHHhCC-eE
Q 031083 89 MGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KF 155 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~ 155 (166)
|++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.. +.+..++++++++.+++ ++
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (201)
T 2gco_A 98 DVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 176 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence 999999999999999998 56777776654 478999999999995432 45677889999999998 89
Q ss_pred EEEecccCCCC
Q 031083 156 FETVSMFNNEW 166 (166)
Q Consensus 156 ~~~Sa~~~~~v 166 (166)
+++||++|.||
T Consensus 177 ~~~SA~~g~gi 187 (201)
T 2gco_A 177 LECSAKTKEGV 187 (201)
T ss_dssp EECCTTTCTTH
T ss_pred EEeeCCCCCCH
Confidence 99999999875
No 63
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=9.9e-33 Score=186.69 Aligned_cols=153 Identities=31% Similarity=0.560 Sum_probs=133.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
....+||+++|++++|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++++..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 45679999999999999999999999988888777776544 45667888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++|||++++++++.+..|+..+..... .+.|+++|+||+|+. ..+.+..++++++++.++++++++||++|+||
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 168 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCH
Confidence 999999999999999999998877554 478999999999993 34557788899999999999999999999875
No 64
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.8e-32 Score=182.34 Aligned_cols=149 Identities=30% Similarity=0.425 Sum_probs=108.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
.+||+++|++|+|||||++++.+..+... .++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999997665433 33333333 46678889999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
||++++++++.+..|+..+.... ..+.|+++|+||+|+ .....+..++++.+++.++++++++||++|+||
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 151 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL-VRSREVSVDEGRACAVVFDCKFIETSAALHHNV 151 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTC-CSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccc-ccccccCHHHHHHHHHHhCCcEEEeccCCCCCH
Confidence 99999999999999999887643 357899999999999 445677888899999999999999999999885
No 65
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=4.3e-32 Score=184.43 Aligned_cols=154 Identities=33% Similarity=0.542 Sum_probs=122.1
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
.+.-..+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 94 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence 3345679999999999999999999999888777777665443 466778888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. ..+..++++++++.++++++++||++|+|+
T Consensus 95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 170 (190)
T 3con_A 95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPFIETSAKTRQGV 170 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc--ccCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 99999999999999999999988876543 4789999999999944 456778899999999999999999999874
No 66
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=3.3e-32 Score=184.49 Aligned_cols=151 Identities=34% Similarity=0.579 Sum_probs=131.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
+..+||+++|++|+|||||+++|.++.+...+.++.. +.....+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4679999999999999999999999988877777765 455567788898999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+. ......++++.+++.++++++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 153 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP--SRTVDTKQAQDLARSYGIPFIETSAKTRQGV 153 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS--SCSSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc--ccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 9999999999999999999887743 3578999999999994 4556778899999999999999999999875
No 67
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=190.79 Aligned_cols=153 Identities=33% Similarity=0.634 Sum_probs=112.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
....+||+++|++++|||||+++|.++.+...+.++....+ ...+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 35679999999999999999999999988777777775443 46677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------cccchHHHHHHHHHhCC-eEEEE
Q 031083 92 LLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFET 158 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~ 158 (166)
++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.... +.+..++++++++.+++ +++++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999997 6888776654 478999999999995442 35677889999999998 99999
Q ss_pred ecccCCCC
Q 031083 159 VSMFNNEW 166 (166)
Q Consensus 159 Sa~~~~~v 166 (166)
||++|.||
T Consensus 189 SA~~g~gi 196 (214)
T 2j1l_A 189 SARLHDNV 196 (214)
T ss_dssp BTTTTBSH
T ss_pred cCCCCCCH
Confidence 99999885
No 68
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.6e-32 Score=185.67 Aligned_cols=152 Identities=30% Similarity=0.612 Sum_probs=132.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
...+||+++|.+++|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 3579999999999999999999999988887777776444 456678888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CcccchHHHHHHHHHhCC-eEEEEe
Q 031083 93 LVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETV 159 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (166)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+. .+.+..+++..+++.+++ +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 68888876654 7899999999999543 245677889999999997 999999
Q ss_pred cccCCCC
Q 031083 160 SMFNNEW 166 (166)
Q Consensus 160 a~~~~~v 166 (166)
|++|+|+
T Consensus 161 a~~g~gi 167 (186)
T 1mh1_A 161 ALTQRGL 167 (186)
T ss_dssp TTTCTTH
T ss_pred CCCccCH
Confidence 9999875
No 69
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-32 Score=188.22 Aligned_cols=152 Identities=34% Similarity=0.527 Sum_probs=132.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
....+||+++|.+++|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 45679999999999999999999999998888888877554 45677888889999999999887 67788889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCC-CC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNN-EW 166 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v 166 (166)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+. ..+.+..++++++++.++++++++||++|+ ||
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD-HSRQVSTEEGEKLATELACAFYECSACTGEGNI 178 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc-cccccCHHHHHHHHHHhCCeEEEECCCcCCcCH
Confidence 99999999999999999998887654 3588999999999993 346677889999999999999999999998 74
No 70
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-32 Score=182.77 Aligned_cols=151 Identities=28% Similarity=0.481 Sum_probs=130.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
..+||+++|++++|||||++++.++.+...+.++.+..+. ..+..++..+.+.+||+||++++..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4689999999999999999999999887777777764443 556778888899999999999999989999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|||++++.+++.+..|+..+.+... .+.|+++|+||+|+ .....+..++++.+++.++++++++||++|.||
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE-SPSREVQSSEAEALARTWKCAFMETSAKLNHNV 154 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGG-GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccc-ccccccCHHHHHHHHHHhCCeEEEecCCCCcCH
Confidence 9999999999999999888876532 47899999999999 334556778889999999999999999999875
No 71
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-32 Score=190.48 Aligned_cols=153 Identities=31% Similarity=0.641 Sum_probs=130.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
....+||+++|++++|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 35679999999999999999999999998888888877544 45667788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCc-------ccchHHHHHHHHHhCC-eEEEEeccc
Q 031083 92 LLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKR-------AVPTAKGQELADEYGI-KFFETVSMF 162 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~~~-------~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (166)
|+|||++++++++.+. .|+..+....+ +.|+++|+||+|+.+... .+..++++++++.+++ +|+++||++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 9999999999999987 78888877654 789999999999944322 2467889999999996 999999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
|+||
T Consensus 164 g~gi 167 (212)
T 2j0v_A 164 QQNV 167 (212)
T ss_dssp CTTH
T ss_pred CCCH
Confidence 9875
No 72
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=8.3e-33 Score=191.85 Aligned_cols=154 Identities=28% Similarity=0.517 Sum_probs=132.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 90 (166)
.+..+||+++|.+++|||||+++|.++.+...+.++.+.......+... +..+.+.+||++|++.+..++..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 4678999999999999999999999998888878887766665555543 444889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+ .....+..+++..+++..+++++++||++|.||
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDI-KNRQKISKKLVMEVLKGKNYEYFEISAKTAHNF 162 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTC-C----CCHHHHHHHTTTCCCEEEEEBTTTTBTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-ccccccCHHHHHHHHHHcCCcEEEEecCCCCCH
Confidence 999999999999999999999998877767999999999999 444567778889999999999999999999986
No 73
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.3e-32 Score=187.07 Aligned_cols=153 Identities=31% Similarity=0.575 Sum_probs=126.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
....+||+++|.+++|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||+||++++...+..+++.+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 456789999999999999999999999988877777765554 4467888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------cccchHHHHHHHHHhCC-eEEEE
Q 031083 92 LLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFET 158 (166)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~ 158 (166)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.... +.+..+++.++++.+++ +++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 999999999999998 56777776654 478999999999995432 45677889999999998 99999
Q ss_pred ecccCCCC
Q 031083 159 VSMFNNEW 166 (166)
Q Consensus 159 Sa~~~~~v 166 (166)
||++|.||
T Consensus 180 SA~~g~gi 187 (207)
T 2fv8_A 180 SAKTKEGV 187 (207)
T ss_dssp CTTTCTTH
T ss_pred eCCCCCCH
Confidence 99999875
No 74
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=1.3e-32 Score=191.44 Aligned_cols=154 Identities=27% Similarity=0.582 Sum_probs=136.2
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
.......+||+++|.+++|||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 44567889999999999999999999888887788888888888888888899999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+... ..+...+++..+++|+++||++|.||
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKSNYNF 162 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS---CGGGCCHHHHHTCEEEECBGGGTBTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc---cHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999999999987654 789999999999944322 23567788999999999999999986
No 75
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=1.9e-31 Score=176.84 Aligned_cols=149 Identities=33% Similarity=0.561 Sum_probs=130.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 94 (166)
.+||+++|++|+|||||++++.++.+...+.++.+.. ....+..++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 5899999999999999999999988877777776543 346677888889999999999999999899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 95 YDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .....++++++++.++++++++||++|.|+
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 152 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQDLARSYGIPYIETSAKTRQGV 152 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEEECTTTCTTH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh--cccCHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 999999999999999988876543 4789999999999844 456678899999999999999999999874
No 76
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=3e-33 Score=188.71 Aligned_cols=153 Identities=30% Similarity=0.635 Sum_probs=115.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
..+.+||+++|++++|||||++++.++.+...+.++.+..+. ..+..++..+.+.+||+||++++...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 356799999999999999999999998887777777654433 3345566778899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCc---------ccchHHHHHHHHHhCC-eEEEEec
Q 031083 92 LLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKR---------AVPTAKGQELADEYGI-KFFETVS 160 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~~~---------~~~~~~~~~~~~~~~~-~~~~~Sa 160 (166)
++|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+... .+..++++++++.+++ +|+++||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 9999999999999997 68888876654 789999999999944322 2467889999999997 9999999
Q ss_pred ccCCCC
Q 031083 161 MFNNEW 166 (166)
Q Consensus 161 ~~~~~v 166 (166)
++|+||
T Consensus 163 ~~~~gi 168 (182)
T 3bwd_D 163 KSQENV 168 (182)
T ss_dssp TTCTTH
T ss_pred CCCCCH
Confidence 999875
No 77
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.7e-32 Score=184.26 Aligned_cols=151 Identities=30% Similarity=0.483 Sum_probs=131.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
...++|+++|.+++|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 55799999999999999999999999888777777764443 55677888899999999999999998999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ..+..+++..+++.++++++++||++|.||
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--REVDTREAQAVAQEWKCAFMETSAKMNYNV 158 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS--CSSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc--cccCHHHHHHHHHHhCCeEEEEecCCCCCH
Confidence 99999999999999988887766442 3789999999999943 456678889999999999999999999875
No 78
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=3e-31 Score=181.02 Aligned_cols=152 Identities=26% Similarity=0.396 Sum_probs=122.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC--CCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc-ccccccccccccc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDD--SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAM 89 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d 89 (166)
...+||+++|++++|||||+++|.+. .+...+ ++.+.++....+.+++..+.+.+||++|++. +..++..+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 45699999999999999999999963 333333 3355566667788899999999999999776 5556777888999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++++|||++++++|+.+..|+..+.... ..+.|+++|+||+|+. ..+.+..++++.++..++++|+++||++|+||
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~-~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v 159 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RXREVSVSEGRAXAVVFDXKFIETSAAVQHNV 159 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh-ccccccHHHHHHHHHHhCCceEEeccccCCCH
Confidence 9999999999999999999988886643 3478999999999994 34567778888899999999999999999985
No 79
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=8.4e-32 Score=185.28 Aligned_cols=153 Identities=30% Similarity=0.603 Sum_probs=129.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
....+||+++|.+++|||||++++.++.+...+.++.+ +.....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 45679999999999999999999999988888777775 44456777888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------cccchHHHHHHHHHhCC-eEEEE
Q 031083 92 LLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFET 158 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~ 158 (166)
++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. ..+..+++..+++.+++ +++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999997 6777777665 578999999999995432 23677889999999996 69999
Q ss_pred ecccCCCC
Q 031083 159 VSMFNNEW 166 (166)
Q Consensus 159 Sa~~~~~v 166 (166)
||++|+||
T Consensus 185 SA~~g~gi 192 (204)
T 4gzl_A 185 SALTQRGL 192 (204)
T ss_dssp CTTTCTTH
T ss_pred eCCCCCCH
Confidence 99999985
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.98 E-value=1.8e-31 Score=182.38 Aligned_cols=158 Identities=16% Similarity=0.303 Sum_probs=115.9
Q ss_pred ccccCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCC-CccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 031083 5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83 (166)
Q Consensus 5 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 83 (166)
+.....+.....||+|+|.+++|||||+++|.++.+.. .+.++.+. ....+... .+.+.+||++|++++..++..
T Consensus 7 ~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~--~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~ 82 (199)
T 4bas_A 7 HHHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY--NVETFEKG--RVAFTVFDMGGAKKFRGLWET 82 (199)
T ss_dssp ---------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE--EEEEEEET--TEEEEEEEECCSGGGGGGGGG
T ss_pred ccccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce--eEEEEEeC--CEEEEEEECCCCHhHHHHHHH
Confidence 33445667889999999999999999999999999887 77777763 33344443 478999999999999999999
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCCCCcccchHHHH---HHHHHhC
Q 031083 84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA--------DNVNKILVGNKADMDESKRAVPTAKGQ---ELADEYG 152 (166)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~piivv~~K~Dl~~~~~~~~~~~~~---~~~~~~~ 152 (166)
+++.+|++|+|||++++++++.+..|+..+..... .+.|+++|+||+|+..........+.. .+++..+
T Consensus 83 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (199)
T 4bas_A 83 YYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHP 162 (199)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSC
T ss_pred HHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCe
Confidence 99999999999999999999999999888765421 378999999999995442211111111 1224467
Q ss_pred CeEEEEecccCCCC
Q 031083 153 IKFFETVSMFNNEW 166 (166)
Q Consensus 153 ~~~~~~Sa~~~~~v 166 (166)
++++++||++|+||
T Consensus 163 ~~~~~~Sa~~g~gv 176 (199)
T 4bas_A 163 FVIFASNGLKGTGV 176 (199)
T ss_dssp EEEEECBTTTTBTH
T ss_pred eEEEEeeCCCccCH
Confidence 89999999999885
No 81
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=2.2e-32 Score=186.50 Aligned_cols=151 Identities=22% Similarity=0.308 Sum_probs=122.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCc-----------cccceeEeEEEEE-EECCeEEEEEEEeCCCccccc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSF-----------ITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERFR 78 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~ 78 (166)
..+..+||+++|++++|||||++.+.+ .+...+ .++.+.++....+ .+++..+.+.+||+||++++.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 456789999999999999999976655 444442 3344444444444 556778899999999999999
Q ss_pred cccccccccccEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC
Q 031083 79 TITTAYYRGAMGILLVYDVT------DESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG 152 (166)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~ 152 (166)
.++..+++++|++|+|||++ +.++++.+..|+..+.. ...+.|+++|+||+|+.+ .+..++++++++.++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~ 164 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD---ALPVEMVRAVVDPEG 164 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT---CCCHHHHHHHHCTTC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc---ccCHHHHHHHHHhcC
Confidence 99999999999999999999 56777778788877732 335899999999999944 377889999999999
Q ss_pred C-eEEEEecccCCCC
Q 031083 153 I-KFFETVSMFNNEW 166 (166)
Q Consensus 153 ~-~~~~~Sa~~~~~v 166 (166)
+ +++++||++|+||
T Consensus 165 ~~~~~~~Sa~~~~gv 179 (198)
T 3t1o_A 165 KFPVLEAVATEGKGV 179 (198)
T ss_dssp CSCEEECBGGGTBTH
T ss_pred CceEEEEecCCCcCH
Confidence 9 9999999999885
No 82
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=6.9e-31 Score=178.62 Aligned_cols=150 Identities=19% Similarity=0.358 Sum_probs=120.0
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCC-CCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 88 (166)
......+||+++|.+++|||||+++|.+.. +...+.++.+ +....+.+++ +.+.+||++|++++...+..+++++
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC
Confidence 445678999999999999999999999887 5666666665 4556666665 6899999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCcccchHHHHHHHH-----HhCCeEEEEec
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAA---DNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETVS 160 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa 160 (166)
|++++|||++++++++.+..|+..+..... .+.|+++|+||+|+.. ....+++.++.. ..+++++++||
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD---AVTSVKVSQLLCLENIKDKPWHICASDA 168 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT---CCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc---CCCHHHHHHHhChhhccCCceEEEEccC
Confidence 999999999999999999999988876532 4789999999999943 234455665553 23578999999
Q ss_pred ccCCCC
Q 031083 161 MFNNEW 166 (166)
Q Consensus 161 ~~~~~v 166 (166)
++|+||
T Consensus 169 ~~~~gi 174 (190)
T 2h57_A 169 IKGEGL 174 (190)
T ss_dssp TTTBTH
T ss_pred CCCcCH
Confidence 999875
No 83
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=4.1e-30 Score=176.11 Aligned_cols=153 Identities=49% Similarity=0.886 Sum_probs=134.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
++.++|+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 56799999999999999999999999988888888888888888999999999999999999999888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|||+++..+++.+..|+..+......+.|+++++||+|+ .+......++++.++.+.++.++++||+++.++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl-~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i 155 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNV 155 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccc-ccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 9999999999999888988876655557899999999999 444556678899999999999999999999874
No 84
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=1.2e-30 Score=177.34 Aligned_cols=153 Identities=20% Similarity=0.372 Sum_probs=118.6
Q ss_pred ccCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 031083 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (166)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 86 (166)
..+......+||+|+|.+++|||||+++|.++.+...+.++.+.++. .+...+ +.+.+||+||++++...+..+++
T Consensus 14 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~ 89 (188)
T 1zd9_A 14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCR 89 (188)
T ss_dssp -----CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHT
T ss_pred ccccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHc
Confidence 33444667899999999999999999999999988777887775544 344444 78999999999999999999999
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHHH-----HHhCCeEEEEec
Q 031083 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELA-----DEYGIKFFETVS 160 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa 160 (166)
.+|++++|||++++++++.+..|+..+... ...+.|+++|+||+|+.... ..+++.+.. ...+++++++||
T Consensus 90 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA 166 (188)
T 1zd9_A 90 GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL---DEKELIEKMNLSAIQDREICCYSISC 166 (188)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC---CHHHHHHHhChhhhccCCeeEEEEEC
Confidence 999999999999999999999998887653 23578999999999994431 122222211 123468999999
Q ss_pred ccCCCC
Q 031083 161 MFNNEW 166 (166)
Q Consensus 161 ~~~~~v 166 (166)
++|+||
T Consensus 167 ~~g~gv 172 (188)
T 1zd9_A 167 KEKDNI 172 (188)
T ss_dssp TTCTTH
T ss_pred CCCCCH
Confidence 999885
No 85
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=5.1e-31 Score=178.04 Aligned_cols=152 Identities=20% Similarity=0.333 Sum_probs=115.9
Q ss_pred ccCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 031083 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (166)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 86 (166)
.......+.+||+++|.+++|||||+++|.++.+ ..+.++.+.. ...+.+++ +.+.+||++|++++..++..+++
T Consensus 13 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~ 87 (181)
T 2h17_A 13 GLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYT 87 (181)
T ss_dssp --------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS--CEEEEETT--EEEEEEEESSSGGGTCGGGGGGT
T ss_pred CccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhc
Confidence 3345567789999999999999999999999887 4555555533 34555565 78999999999999999999999
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHH-----HHhCCeEEEEec
Q 031083 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELA-----DEYGIKFFETVS 160 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa 160 (166)
.+|++++|||++++++++.+..|+..+.... ..+.|+++|+||+|+... ...+++.+.. +..+++++++||
T Consensus 88 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa 164 (181)
T 2h17_A 88 NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCA 164 (181)
T ss_dssp TCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECBT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC---CCHHHHHHHhCcccccCCceEEEEccC
Confidence 9999999999999999999999988876542 357899999999999442 2233443333 223568999999
Q ss_pred ccCCCC
Q 031083 161 MFNNEW 166 (166)
Q Consensus 161 ~~~~~v 166 (166)
++|+||
T Consensus 165 ~~g~gi 170 (181)
T 2h17_A 165 LTGEGL 170 (181)
T ss_dssp TTTBTH
T ss_pred CCCcCH
Confidence 999885
No 86
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=1.4e-30 Score=178.38 Aligned_cols=146 Identities=20% Similarity=0.336 Sum_probs=113.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
...+||+++|++|+|||||++++.++.+. .+.+|.+.. ...+.+++ +.+.+||+||++.++.++..+++++|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 44589999999999999999999988764 345555433 35666776 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHH-----------------hCCe
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADE-----------------YGIK 154 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~ 154 (166)
+|||++++++++.+..|+..+.+. ...+.|+++|+||+|+.. .+..+++++++.. .+++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARPLE 174 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc---cCCHHHHHHHhCcccccccccccccccccCceEE
Confidence 999999999999999999888654 335789999999999943 4566777777653 3468
Q ss_pred EEEEecccCCCC
Q 031083 155 FFETVSMFNNEW 166 (166)
Q Consensus 155 ~~~~Sa~~~~~v 166 (166)
+++|||++|+||
T Consensus 175 ~~~~SA~~g~gv 186 (198)
T 1f6b_A 175 VFMCSVLKRQGY 186 (198)
T ss_dssp EEECBTTTTBSH
T ss_pred EEEEECCCCCCH
Confidence 999999999985
No 87
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=8.4e-30 Score=173.65 Aligned_cols=156 Identities=49% Similarity=0.896 Sum_probs=138.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
...++.++|+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.++
T Consensus 24 ~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~ 103 (191)
T 1oix_A 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAV 103 (191)
T ss_dssp CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence 34567899999999999999999999999998888899998888889999999989999999999999888888899999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++++|||.++..+++.+..|+..+......+.|+++++||.|+ .+......++++.++.+.++.++++||+++.++
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl-~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v 179 (191)
T 1oix_A 104 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNV 179 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG-GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc-ccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999888888776655557899999999999 444556678899999999999999999999874
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=4.6e-30 Score=174.77 Aligned_cols=146 Identities=22% Similarity=0.341 Sum_probs=118.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
.+.+||+++|++|+|||||++++.++.+. .+.++.+. ....+.+++ +.+.+||+||++.++.++..+++++|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 45679999999999999999999998874 34555543 456677777 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHH------------hCCeEEEEe
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADE------------YGIKFFETV 159 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~S 159 (166)
+|||++++++++.+..|+..+.+. ...+.|+++|+||+|+.. .+..+++.+.... .+++++++|
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCS 172 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECB
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC---CCCHHHHHHHhCCccccccccccccceEEEEEeE
Confidence 999999999999999999888653 235789999999999943 4455666665442 346899999
Q ss_pred cccCCCC
Q 031083 160 SMFNNEW 166 (166)
Q Consensus 160 a~~~~~v 166 (166)
|++|+||
T Consensus 173 a~~g~gi 179 (190)
T 1m2o_B 173 VVMRNGY 179 (190)
T ss_dssp TTTTBSH
T ss_pred CCcCCCH
Confidence 9999885
No 89
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=1.7e-30 Score=173.47 Aligned_cols=147 Identities=21% Similarity=0.391 Sum_probs=115.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
....+||+++|++++|||||++++.++.+.. +.++.+ .....+.+++ ..+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 78 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAV 78 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEE
Confidence 3456999999999999999999999888753 455555 4445566664 6799999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHH-----HHHHhCCeEEEEecccCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQE-----LADEYGIKFFETVSMFNNE 165 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~ 165 (166)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ..+++.+ .++..+++++++||++|+|
T Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (171)
T 1upt_A 79 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM---TSSEMANSLGLPALKDRKWQIFKTSATKGTG 155 (171)
T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCTTSCEEEEECCTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC---CHHHHHHHhCchhccCCceEEEECcCCCCcC
Confidence 99999999999999998888775532 3578999999999994432 1122222 2233456899999999987
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
|
T Consensus 156 i 156 (171)
T 1upt_A 156 L 156 (171)
T ss_dssp H
T ss_pred H
Confidence 5
No 90
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=3.6e-31 Score=181.01 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=112.9
Q ss_pred cccCCCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEE--EEEE-CCeEEEEEEEeCCCcccccccc-
Q 031083 6 ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIR--TIEL-DGKRIKLQIWDTAGQERFRTIT- 81 (166)
Q Consensus 6 ~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~i~D~~g~~~~~~~~- 81 (166)
.....+.++.+||+++|.+++|||||++++.+. +... ++.+.++... ...+ ++..+.+.+||++|+++|....
T Consensus 11 ~~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 87 (196)
T 3llu_A 11 RENLYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTF 87 (196)
T ss_dssp ---------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTC
T ss_pred CCCCcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhh
Confidence 344466788999999999999999999988874 3333 3333333322 2223 2556789999999999987766
Q ss_pred --ccccccccEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------CcccchHHHHHHHH--
Q 031083 82 --TAYYRGAMGILLVYDVTDE--SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES------KRAVPTAKGQELAD-- 149 (166)
Q Consensus 82 --~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~------~~~~~~~~~~~~~~-- 149 (166)
..+++++|++|+|||++++ ++++.+..|+..+... ..+.|+++|+||+|+.++ .+.+..++++++++
T Consensus 88 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (196)
T 3llu_A 88 DYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG 166 (196)
T ss_dssp CHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh
Confidence 7899999999999999997 6677777777776543 348999999999998442 33456667788888
Q ss_pred --HhCCeEEEEecccCCCC
Q 031083 150 --EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 150 --~~~~~~~~~Sa~~~~~v 166 (166)
.++++|+++||++ +||
T Consensus 167 ~~~~~~~~~e~Sa~~-~~v 184 (196)
T 3llu_A 167 LEKLHLSFYLTSIYD-HSI 184 (196)
T ss_dssp CTTSCEEEEEECTTS-THH
T ss_pred hhcCCcceEEEEech-hhH
Confidence 7789999999999 764
No 91
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=1.5e-29 Score=185.30 Aligned_cols=152 Identities=29% Similarity=0.615 Sum_probs=132.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
...++|+++|.+++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 4568999999999999999999999998888888776444 466788888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CcccchHHHHHHHHHhCC-eEEEEe
Q 031083 93 LVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETV 159 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (166)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+. .+.+..+++.++++..++ +|+++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 999999999999987 67777776554 7899999999999543 256778899999999997 999999
Q ss_pred cccCCCC
Q 031083 160 SMFNNEW 166 (166)
Q Consensus 160 a~~~~~v 166 (166)
|++|+|+
T Consensus 311 a~~~~gi 317 (332)
T 2wkq_A 311 ALTQRGL 317 (332)
T ss_dssp TTTCTTH
T ss_pred CCCCcCH
Confidence 9999885
No 92
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=1.1e-29 Score=171.90 Aligned_cols=146 Identities=22% Similarity=0.441 Sum_probs=117.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
...+||+++|++++|||||++++.++. ...+.++.+ .....+.+++ +.+.+||+||++++...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999888 666677766 3445556655 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHHHH-----HhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v 166 (166)
+|||++++++++.+..|+..+.+. ...+.|+++|+||+|+.+. ...+++.+... ..+++++++||++|+||
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA---LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDL 167 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC---CCHHHHHHHhChhhccCCceEEEEeeCCCCCCH
Confidence 999999999999999998887653 3357899999999999443 22233333221 34568999999999875
No 93
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.7e-30 Score=176.21 Aligned_cols=146 Identities=21% Similarity=0.360 Sum_probs=114.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
...+||+++|.+++|||||++++.++.+. .+.++.+ +....+.+++ +.+.+||+||++++...+..+++++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999988876 5566655 3334555665 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHH-----HhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v 166 (166)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||++|+||
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCH
Confidence 9999999999999999998886642 357899999999999432 23444444432 34568999999999875
No 94
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=2.2e-32 Score=188.05 Aligned_cols=152 Identities=30% Similarity=0.631 Sum_probs=128.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
...+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 5679999999999999999999999888777777765433 455666777788999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------cccchHHHHHHHHHhCC-eEEEEe
Q 031083 93 LVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFETV 159 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S 159 (166)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.. ..+..+++.++++.+++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999987 67777765444 78999999999995432 24566778889999998 999999
Q ss_pred cccCCCC
Q 031083 160 SMFNNEW 166 (166)
Q Consensus 160 a~~~~~v 166 (166)
|++|+||
T Consensus 186 A~~g~gi 192 (204)
T 3th5_A 186 ALTQRGL 192 (204)
Confidence 9999885
No 95
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=1.3e-30 Score=172.96 Aligned_cols=143 Identities=22% Similarity=0.425 Sum_probs=111.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 95 (166)
+||+++|++++|||||++++.++.+.. +.+|.+ .....+..++ +.+.+||+||++++...+..+++++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999887754 455555 3334444444 78999999999999998889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHH-----HHHhCCeEEEEecccCCCC
Q 031083 96 DVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQEL-----ADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v 166 (166)
|++++++++.+..|+..+... ...+.|+++|+||+|+.+.. ..+++.+. ++..+++++++||++|.||
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRNWYIQATCATSGDGL 149 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC---CHHHHHHHhCcccccCccEEEEEcccCCCcCH
Confidence 999999999999888887553 34578999999999994431 12222221 1123457999999999875
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=2.3e-30 Score=176.56 Aligned_cols=147 Identities=20% Similarity=0.394 Sum_probs=109.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
....+||+++|++++|||||++++.++.+. .+.+|.+ +....+..++ +.+.+||+||++++...+..+++.+|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 356799999999999999999999988875 3455555 4444555555 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHH-----HHHhCCeEEEEecccCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQEL-----ADEYGIKFFETVSMFNNE 165 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~ 165 (166)
++|||++++++++.+..|+..+... ...+.|+++|+||+|+.+.. ..+++.+. ++..+++++++||++|.|
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g 177 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM---PVSELTDKLGLQHLRSRTWYVQATCATQGTG 177 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC---CHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence 9999999999999999998887553 33578999999999994431 12222211 112345799999999987
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
|
T Consensus 178 i 178 (192)
T 2b6h_A 178 L 178 (192)
T ss_dssp H
T ss_pred H
Confidence 5
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=8.3e-31 Score=177.55 Aligned_cols=148 Identities=26% Similarity=0.463 Sum_probs=109.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC--CCCCCccccceeEeEEEEEEE---CCeEEEEEEEeCCCcccccccccccccccc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDD--SFTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 89 (166)
.+||+++|++|+|||||++++.+. .+...+.++.+.++....+.+ ++..+.+.+||++|++++..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999984 555666777777766555443 335678999999999999998899999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccc---hHHHHHHHHHhCCe----EEEEecc
Q 031083 90 GILLVYDVTDE-SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP---TAKGQELADEYGIK----FFETVSM 161 (166)
Q Consensus 90 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~ 161 (166)
++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.+ ...+. .++++.+++.++++ |+++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSD-EKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCC-HHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCccc-chhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999997 57999999999887654 3789999999999943 22221 34456677777886 9999999
Q ss_pred cCC
Q 031083 162 FNN 164 (166)
Q Consensus 162 ~~~ 164 (166)
+|.
T Consensus 160 ~~~ 162 (184)
T 2zej_A 160 EES 162 (184)
T ss_dssp SCC
T ss_pred cCc
Confidence 985
No 98
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=2.3e-29 Score=170.09 Aligned_cols=147 Identities=21% Similarity=0.391 Sum_probs=114.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
+...+||+++|++|+|||||++++.+..+ ..+.++.+ +....+.+++ +.+.+||++|++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 46679999999999999999999998764 34455555 3445566664 6899999999999999899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHHH-----HHhCCeEEEEecccCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELA-----DEYGIKFFETVSMFNNE 165 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~ 165 (166)
++|||++++++++.+..|+..+... ...+.|+++|+||+|+.+.. ..+++.+.. ...+++++++||++|+|
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 164 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA---PASEIAEGLNLHTIRDRVWQIQSCSALTGEG 164 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC---CHHHHHHHhCchhccCCceEEEEccCCCCCC
Confidence 9999999999999999888877543 33578999999999994432 222332221 12346899999999998
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
|
T Consensus 165 i 165 (181)
T 1fzq_A 165 V 165 (181)
T ss_dssp H
T ss_pred H
Confidence 5
No 99
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-30 Score=184.88 Aligned_cols=157 Identities=24% Similarity=0.311 Sum_probs=116.7
Q ss_pred ccCCCCCceeeEEEEcCC---------CCcHHHHHHHHhc---CCCCCCccccc-eeEeEEEE--------------EEE
Q 031083 7 RARADYDYLIKLLLIGDS---------GVGKSCLLLRFSD---DSFTTSFITTI-GIDFKIRT--------------IEL 59 (166)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~---------~~GKssli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~ 59 (166)
+......+.+||+++|.+ ++|||||+++|.+ ..+...+.++. +.++.... ..+
T Consensus 11 ~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~ 90 (255)
T 3c5h_A 11 RENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLE 90 (255)
T ss_dssp CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC----
T ss_pred cCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeeccccccccccccccc
Confidence 344556788999999999 9999999999999 55666666554 33322111 124
Q ss_pred CCeEEEEEEEe-----------------------CCCccccccccccccc---------------------cccEEEEEE
Q 031083 60 DGKRIKLQIWD-----------------------TAGQERFRTITTAYYR---------------------GAMGILLVY 95 (166)
Q Consensus 60 ~~~~~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~ 95 (166)
++..+.+.+|| ++|+++|..++..+++ ++|++|+||
T Consensus 91 ~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~ 170 (255)
T 3c5h_A 91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGI 170 (255)
T ss_dssp -----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEE
T ss_pred CCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEE
Confidence 56778999999 6677888888888887 799999999
Q ss_pred ECCCh--hhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHh-CCeEEEEecccCCCC
Q 031083 96 DVTDE--SSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEY-GIKFFETVSMFNNEW 166 (166)
Q Consensus 96 d~~~~--~s~~~~~~~~~~~~~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v 166 (166)
|++++ .+++.+..|+..+... ...+.|+++|+||+|+. ..+.+ ++++++++.. +++++++||++|.||
T Consensus 171 D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~-~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv 242 (255)
T 3c5h_A 171 DVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG-VERYI--RDAHTFALSKKNLQVVETSARSNVNV 242 (255)
T ss_dssp ECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB-CHHHH--HHHHHHHHTSSSCCEEECBTTTTBSH
T ss_pred ECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc-ccHHH--HHHHHHHHhcCCCeEEEEECCCCCCH
Confidence 99998 9999999999988765 34579999999999993 22333 5778888874 789999999999885
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=2.5e-29 Score=169.62 Aligned_cols=146 Identities=20% Similarity=0.394 Sum_probs=112.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
...+||+++|++|+|||||++++.++.+ ..+.++.+ +....+.+++ ..+.+||+||++++...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT--CCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5679999999999999999999998776 45555555 3344556655 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHH-----HhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v 166 (166)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||++|+||
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIKGEGI 167 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 9999999999999999988886643 357899999999999442 22334433332 12357999999999875
No 101
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=8e-30 Score=173.15 Aligned_cols=146 Identities=20% Similarity=0.346 Sum_probs=114.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
+..+||+++|++++|||||++++.++.+.. +.++.+ .....+.+++ +.+.+||+||++++...+..+++++|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999999887643 455555 3344555554 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHH-----HHHHhCCeEEEEecccCCCC
Q 031083 93 LVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQE-----LADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v 166 (166)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+... .+++.+ .++..+++++++||++|+||
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS---EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGL 171 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC---HHHHHHHhChhhccCCceEEEEccCCCccCH
Confidence 9999999999999998888775532 34789999999999944321 122222 12233468999999999875
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=3e-29 Score=173.42 Aligned_cols=120 Identities=15% Similarity=0.269 Sum_probs=92.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCe-EEEEEEEeCCCcccccc-ccccccccccE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRT-ITTAYYRGAMG 90 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~d~ 90 (166)
...+||+++|++++|||||+++|.++.+...+.++. .+... +.+++. .+.+.+||+||++++.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 567999999999999999999999988877765443 33332 556543 57899999999999887 78888999999
Q ss_pred EEEEEECCChh-hHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCC
Q 031083 91 ILLVYDVTDES-SFNNIRNWMRNIDQH---AADNVNKILVGNKADMDES 135 (166)
Q Consensus 91 ~i~v~d~~~~~-s~~~~~~~~~~~~~~---~~~~~piivv~~K~Dl~~~ 135 (166)
+++|||+++.. ++..+..++..+... ...+.|+++|+||+|+...
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 99999999854 466666655554332 2447899999999999543
No 103
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=3.2e-28 Score=176.97 Aligned_cols=146 Identities=23% Similarity=0.349 Sum_probs=114.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCC---CCccccceeEeEEEEEEECCeEEEEEEEeCCCcccc-----cccccccc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFT---TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYY 85 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~ 85 (166)
..+||+++|.+|+|||||+++++++... ..+.+|.+..+ ..+.+++ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~--~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH--SHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEE--EEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEE--EEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999987332 23444544433 3445444 578999999999988 67888889
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHHh--cCCCCcEEEEEeCCCCCCC-Ccc----cchHHHHHHHHHhC---CeE
Q 031083 86 RGAMGILLVYDVTDESSFNNIRNWMRNIDQH--AADNVNKILVGNKADMDES-KRA----VPTAKGQELADEYG---IKF 155 (166)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piivv~~K~Dl~~~-~~~----~~~~~~~~~~~~~~---~~~ 155 (166)
+++|++|+|||++++.+++.+..|...+... ...+.|+++|+||+|+.+. .+. +..++++++++.+| +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 9999999999999999999997775554332 1347999999999999442 233 56688899999997 799
Q ss_pred EEEeccc
Q 031083 156 FETVSMF 162 (166)
Q Consensus 156 ~~~Sa~~ 162 (166)
+++||++
T Consensus 159 ~~tSa~~ 165 (307)
T 3r7w_A 159 FPTSIWD 165 (307)
T ss_dssp EECCTTS
T ss_pred EEeeecC
Confidence 9999998
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=4.1e-28 Score=161.57 Aligned_cols=142 Identities=18% Similarity=0.202 Sum_probs=105.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccc------ccccccc--
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYYR-- 86 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~-- 86 (166)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+||+||++.+.. +...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 48999999999999999999998776555556555555566666766 5799999999887652 2344554
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++|++++|+|+++.++ ...|+..+.+ .+.|+++|+||+|+.. ...+.. +++++++.++++++++||++|+||
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAK-SLGIEI-DVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHH-HTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhcc-ccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence 7999999999998554 3446666654 3689999999999833 222322 478899999999999999999885
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=1.4e-27 Score=160.30 Aligned_cols=142 Identities=21% Similarity=0.227 Sum_probs=108.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
.+..++|+++|++++|||||+++|.++.+...+.++.+.++....+.+++. .+.+||+||++++...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 456789999999999999999999999888777766666666566777774 578999999999999999999999999
Q ss_pred EEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHH-------hC--CeEEEEe
Q 031083 92 LLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE-------YG--IKFFETV 159 (166)
Q Consensus 92 i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~-------~~--~~~~~~S 159 (166)
++|||+++ +.+++.+ ..+ ...+.|+++|+||+|+... ..++....... ++ ++++++|
T Consensus 83 i~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEA----NPDRVMQELMEYNLVPEEWGGDTIFCKLS 151 (178)
T ss_dssp EEEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCS----CHHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred EEEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcC----CHHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence 99999998 3333322 222 2247899999999999442 12233333222 22 5899999
Q ss_pred cccCCCC
Q 031083 160 SMFNNEW 166 (166)
Q Consensus 160 a~~~~~v 166 (166)
|++|+||
T Consensus 152 a~~~~gv 158 (178)
T 2lkc_A 152 AKTKEGL 158 (178)
T ss_dssp SSSSHHH
T ss_pred cCCCCCH
Confidence 9999874
No 106
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=1.9e-27 Score=166.09 Aligned_cols=152 Identities=20% Similarity=0.153 Sum_probs=105.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc------c----ccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE------R----FRT 79 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~------~----~~~ 79 (166)
...+..++|+|+|.+|+|||||+++|.+..+.....+..+.+.....+..++ ..+.+||+||+. . +..
T Consensus 24 ~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 101 (228)
T 2qu8_A 24 SINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT 101 (228)
T ss_dssp SCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH
Confidence 3346789999999999999999999999876533333333444444555555 679999999983 2 211
Q ss_pred ccccccccccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccch---HHHHHHHHHhC--
Q 031083 80 ITTAYYRGAMGILLVYDVTDESSFNN--IRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPT---AKGQELADEYG-- 152 (166)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~---~~~~~~~~~~~-- 152 (166)
+..++..+|++++|||++++.+++. ...|+..+.... .+.|+++|+||+|+.+ ...+.. +++++++...+
T Consensus 102 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
T 2qu8_A 102 -ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCN-MDSLSIDNKLLIKQILDNVKNP 178 (228)
T ss_dssp -HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCCSC
T ss_pred -HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCC-chhhHHHHHHHHHHHHHhcCCC
Confidence 2234677899999999999888652 234555554432 3789999999999944 333333 35677788877
Q ss_pred CeEEEEecccCCCC
Q 031083 153 IKFFETVSMFNNEW 166 (166)
Q Consensus 153 ~~~~~~Sa~~~~~v 166 (166)
++++++||++|+||
T Consensus 179 ~~~~~~SA~~g~gi 192 (228)
T 2qu8_A 179 IKFSSFSTLTGVGV 192 (228)
T ss_dssp EEEEECCTTTCTTH
T ss_pred ceEEEEecccCCCH
Confidence 89999999999885
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.3e-28 Score=178.38 Aligned_cols=147 Identities=20% Similarity=0.395 Sum_probs=107.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
....+||+|+|.+++|||||+++|.++.+... .+|.+.. ...+...+ +.+.|||+||++.+..++..+++.+|++
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~v 236 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 236 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 34568999999999999999999999887543 3555433 33444444 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCcccchHHHHHHH-----HHhCCeEEEEecccCCC
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELA-----DEYGIKFFETVSMFNNE 165 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~ 165 (166)
|+|||++++++++.+..|+..+.. ....+.|++||+||+|+.+... .+++.... +..+++++++||++|.|
T Consensus 237 ilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~vSAk~g~g 313 (329)
T 3o47_A 237 IFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRHRNWYIQATCATSGDG 313 (329)
T ss_dssp EEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTCTTCCSSCEEEEECBTTTTBT
T ss_pred EEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC---HHHHHHHhchhhhhcCCCEEEEEECCCCcC
Confidence 999999999999999988877754 3335889999999999944321 22222211 12235799999999988
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
|
T Consensus 314 i 314 (329)
T 3o47_A 314 L 314 (329)
T ss_dssp H
T ss_pred H
Confidence 5
No 108
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=1.1e-28 Score=178.85 Aligned_cols=140 Identities=18% Similarity=0.221 Sum_probs=105.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCC---CccccceeEeEEEEEEECCeEEEEEEEeCCCcccccc---ccccccccccE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---ITTAYYRGAMG 90 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~ 90 (166)
||+++|..|+|||||++++.++.++. ...+|.+.++.. ++ ..+.+.+||++||++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999988764432 245666655542 22 347899999999999964 35788999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC------cccchHHHHHHHHH----hCCeEEEE
Q 031083 91 ILLVYDVTDE--SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK------RAVPTAKGQELADE----YGIKFFET 158 (166)
Q Consensus 91 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~------~~~~~~~~~~~~~~----~~~~~~~~ 158 (166)
+|+|||++++ +....+..|+..+... .+++|++++|||+|+..+. +++..++++++++. ++++||+|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 2222333334444433 3489999999999995442 45777888889986 68999999
Q ss_pred eccc
Q 031083 159 VSMF 162 (166)
Q Consensus 159 Sa~~ 162 (166)
||++
T Consensus 155 SAkd 158 (331)
T 3r7w_B 155 SIFD 158 (331)
T ss_dssp CSSS
T ss_pred ccCC
Confidence 9986
No 109
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=2.8e-28 Score=169.03 Aligned_cols=144 Identities=17% Similarity=0.303 Sum_probs=107.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCC---ccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccc-
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS---FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG- 87 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~- 87 (166)
....++|+++|++|+|||||+++|.+..+... +.++.+.++ ....+.+||+||++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 45679999999999999999999999876542 333332222 33578999999999998888888877
Q ss_pred ---ccEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCCcccc------hHHHHHHHHHhCC
Q 031083 88 ---AMGILLVYDVT-DESSFNNIRNWMRNIDQH----AADNVNKILVGNKADMDESKRAVP------TAKGQELADEYGI 153 (166)
Q Consensus 88 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~piivv~~K~Dl~~~~~~~~------~~~~~~~~~~~~~ 153 (166)
+|++++|||++ +++++..+..|+..+... ...+.|+++|+||+|+... ..+. .+++..++...++
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA-RPPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc-CCHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999 889999998888877654 3458999999999999443 3222 4567788888889
Q ss_pred eEEEEecccCCC
Q 031083 154 KFFETVSMFNNE 165 (166)
Q Consensus 154 ~~~~~Sa~~~~~ 165 (166)
+|+++||++|++
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 999999999875
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=4.8e-27 Score=159.15 Aligned_cols=143 Identities=18% Similarity=0.212 Sum_probs=111.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccc------cccccccc-
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR- 86 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 86 (166)
+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+||+||++.+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 568999999999999999999998776555566666666667777776 678999999988774 23455554
Q ss_pred -cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCC
Q 031083 87 -GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNE 165 (166)
Q Consensus 87 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (166)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+... ..+. .+++++++.++++++++||++|.|
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKS-LGIE-IDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhcccc-ccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence 4999999999885 4555667666654 36899999999998332 2222 457889999999999999999987
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
|
T Consensus 156 v 156 (188)
T 2wjg_A 156 I 156 (188)
T ss_dssp H
T ss_pred H
Confidence 5
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=6.3e-26 Score=174.57 Aligned_cols=144 Identities=20% Similarity=0.448 Sum_probs=113.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 91 (166)
....+||+++|.+++|||||+++|.++.+.. +.+|.+. ....+...+ +.+.+||++|++.+..++..+++.+|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGF--NVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccce--eEEEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 3567999999999999999999999988643 4555553 334455544 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHh--------CCeEEEEeccc
Q 031083 92 LLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEY--------GIKFFETVSMF 162 (166)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~ 162 (166)
|+|||++++++++.+..|+..+.+.. ..+.|++||+||+|+.+. ...+ ++.... +++++++||++
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~SA~~ 467 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA---MKPH---EIQEKLGLTRIRDRNWYVQPSCATS 467 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC---CCHH---HHHHHTTCTTCCSSCEEEEECBTTT
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC---CCHH---HHHHHhchhhhhcCCeEEEEEECCC
Confidence 99999999999999999988886532 357899999999999442 1222 233333 34699999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
|+||
T Consensus 468 g~gi 471 (497)
T 3lvq_E 468 GDGL 471 (497)
T ss_dssp TBTH
T ss_pred CCCH
Confidence 9985
No 112
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=3e-27 Score=183.32 Aligned_cols=151 Identities=23% Similarity=0.303 Sum_probs=111.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEE------EEE--CCeEEEEEEEeCCCccccccccc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRT------IEL--DGKRIKLQIWDTAGQERFRTITT 82 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~g~~~~~~~~~ 82 (166)
.....+||+++|.+++|||||++++.++.+...+.++.+.++.... +.. ++..+.+.+||+||++.+..++.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3567899999999999999999999999988888888876666442 112 23357899999999999999999
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEeccc
Q 031083 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMF 162 (166)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (166)
.+++++|++|+|||+++. +.+..|+..+..... +.|+++|+||+|+. ....+..+++++++...+++++++||++
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~vSA~~ 191 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDEN-PSYNIEQKKINERFPAIENRFHRISCKN 191 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTC-TTCCCCHHHHHHHCGGGTTCEEECCC--
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcc-cccccCHHHHHHHHHhcCCceEEEecCc
Confidence 999999999999999865 455677777776654 68999999999994 4456677888999999999999999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
|.||
T Consensus 192 g~gi 195 (535)
T 3dpu_A 192 GDGV 195 (535)
T ss_dssp ---C
T ss_pred ccCH
Confidence 9986
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=9.9e-27 Score=155.98 Aligned_cols=142 Identities=20% Similarity=0.194 Sum_probs=105.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAY 84 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 84 (166)
...+|+++|++|+|||||+++|.+..+. ....+..+.++....+.+++. .+.+||+||+.++... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3479999999999999999999987642 223344455666677778774 5889999998653221 1235
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCC
Q 031083 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNN 164 (166)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (166)
++.+|++++|||++++.+++ ...|+..+.+....+.|+++|+||+|+.+.... +++..+++++++||++|+
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~SA~~g~ 151 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLG--------MSEVNGHALIRLSARTGE 151 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--------EEEETTEEEEECCTTTCT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchhh--------hhhccCCceEEEeCCCCC
Confidence 78999999999999988875 456777777666567999999999998432211 122346799999999998
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
||
T Consensus 152 gv 153 (172)
T 2gj8_A 152 GV 153 (172)
T ss_dssp TH
T ss_pred CH
Confidence 85
No 114
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=2.3e-26 Score=163.40 Aligned_cols=144 Identities=18% Similarity=0.180 Sum_probs=110.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccc------cccc-
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT------TAYY- 85 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~- 85 (166)
...++|+++|.+|+|||||+++|.+..+.....+..+.+.....+..++ ..+.+||+||+..+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4578999999999999999999999877555556666566656666655 679999999988776532 4444
Q ss_pred -ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCC
Q 031083 86 -RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNN 164 (166)
Q Consensus 86 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (166)
..+|++++|+|+++.++.. .|+..+.. .+.|+++|+||+|+... ..+. .+++++++.++++++++||++|.
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~-~~i~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKK-TGMK-IDRYELQKHLGIPVVFTSSVTGE 152 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHH-TTCC-BCHHHHHHHHCSCEEECCTTTCT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCc-cchH-HHHHHHHHHcCCCEEEEEeeCCc
Confidence 5899999999999876543 35555543 37899999999998332 2222 24788999999999999999998
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
|+
T Consensus 153 gi 154 (258)
T 3a1s_A 153 GL 154 (258)
T ss_dssp TH
T ss_pred CH
Confidence 85
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=1.3e-26 Score=153.18 Aligned_cols=139 Identities=20% Similarity=0.165 Sum_probs=96.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCcccc-------cccccccccc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------RTITTAYYRG 87 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~ 87 (166)
.||+++|++|+|||||++++.+..+. ....+..+.+.....+..++. .+.+||+||+..+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999987753 233344444566666777764 6889999998763 3344567889
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-eEEEEecccCCCC
Q 031083 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETVSMFNNEW 166 (166)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 166 (166)
+|++++|+|++++.+... .++...... .+.|+++|+||+|+.+. .+++++++ ++++ +++++||++|.||
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~-----~~~~~~~~-~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKH-----ELYLGPLY-GLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGG-----GGGCGGGG-GGSSCSCEECBTTTTBSH
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccc-----hHhHHHHH-hCCCCCeEEEecccCCCh
Confidence 999999999998544322 222222222 36899999999999543 23345556 6787 8999999999875
No 116
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=5.4e-27 Score=158.98 Aligned_cols=141 Identities=21% Similarity=0.306 Sum_probs=106.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCC-----------ccccccccccc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITTAY 84 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~ 84 (166)
+||+++|++|+|||||++++.+..+...+.++.+.... .+..+ .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999887776665553333 33333 588999999 56677777777
Q ss_pred ccc-ccEEEEEEECCChhhHHHH-HHHHHH--------H-HHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC
Q 031083 85 YRG-AMGILLVYDVTDESSFNNI-RNWMRN--------I-DQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI 153 (166)
Q Consensus 85 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (166)
++. ++++++||++.+..+++.+ ..|... + ......+.|+++|+||+|+.... .++++++++.+++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV----QEVINFLAEKFEV 151 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH----HHHHHHHHHHHTC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH----HHHHHHHHHHhhh
Confidence 776 7877777777777788776 445432 2 22223578999999999994432 5678889999987
Q ss_pred e-------EEEEecccCCCC
Q 031083 154 K-------FFETVSMFNNEW 166 (166)
Q Consensus 154 ~-------~~~~Sa~~~~~v 166 (166)
+ ++++||++|+||
T Consensus 152 ~~~~~~~~~~~~Sa~~~~~v 171 (190)
T 2cxx_A 152 PLSEIDKVFIPISAKFGDNI 171 (190)
T ss_dssp CGGGHHHHEEECCTTTCTTH
T ss_pred hhhccCCcEEEEecCCCCCH
Confidence 4 799999999985
No 117
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=9.3e-27 Score=158.57 Aligned_cols=148 Identities=15% Similarity=0.153 Sum_probs=97.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTI 80 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 80 (166)
+....++|+++|.+|+|||||+++|.+..+.....++.+..........++ .+.+||+|| ++.+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 345689999999999999999999999876555555544334334444444 589999999 6667777
Q ss_pred cccccccc---cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccc--hHHHHH-HHHHhCCe
Q 031083 81 TTAYYRGA---MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP--TAKGQE-LADEYGIK 154 (166)
Q Consensus 81 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~--~~~~~~-~~~~~~~~ 154 (166)
+..+++.+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+.+. .... .+++++ ++...+++
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPK-GKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCG-GGHHHHHHHHHHHHTCCTTSE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCh-HHHHHHHHHHHHHHcccCCCc
Confidence 77777766 9999999999877765542 2222222 37899999999999432 2221 122332 33234679
Q ss_pred EEEEecccCCCC
Q 031083 155 FFETVSMFNNEW 166 (166)
Q Consensus 155 ~~~~Sa~~~~~v 166 (166)
++++||++|+||
T Consensus 171 ~~~~Sa~~~~gv 182 (195)
T 1svi_A 171 LILFSSETKKGK 182 (195)
T ss_dssp EEECCTTTCTTH
T ss_pred eEEEEccCCCCH
Confidence 999999999885
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=2.3e-26 Score=163.17 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=109.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITTAYY 85 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 85 (166)
.+|+++|.+|+|||||+|+|.+..+.....+..+.+.....+.+++. .+.+||+||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998766666677777777778888774 789999999877653 344556
Q ss_pred --ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccC
Q 031083 86 --RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFN 163 (166)
Q Consensus 86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (166)
..+|++++|+|+++.++...+..++.. .+.|+++|+||+|+.... .. ..+...+++.++++++++||++|
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~------~~~pvilv~NK~Dl~~~~-~~-~~~~~~l~~~lg~~vi~~SA~~g 151 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLFE------LGKPVVVALNMMDIAEHR-GI-SIDTEKLESLLGCSVIPIQAHKN 151 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHTT------SCSCEEEEEECHHHHHHT-TC-EECHHHHHHHHCSCEEECBGGGT
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHHH------cCCCEEEEEEChhcCCcC-Cc-HHHHHHHHHHcCCCEEEEECCCC
Confidence 789999999999987665544433322 278999999999984322 11 12356788899999999999999
Q ss_pred CCC
Q 031083 164 NEW 166 (166)
Q Consensus 164 ~~v 166 (166)
.|+
T Consensus 152 ~gi 154 (256)
T 3iby_A 152 IGI 154 (256)
T ss_dssp BSH
T ss_pred CCH
Confidence 874
No 119
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=9.4e-25 Score=158.75 Aligned_cols=152 Identities=16% Similarity=0.071 Sum_probs=114.4
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCC-CccccceeEeEEEEEEECCeEEEEEEEeCCCccccc----------
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------- 78 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------- 78 (166)
.+++..-.|+++|.+|+|||||+|+|.+..+.. ...+..+..........+ ...++.||||||+....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 345777899999999999999999999987643 223333333444444554 13689999999986544
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC--CeEE
Q 031083 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFF 156 (166)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~ 156 (166)
.....+++.+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+.. ......+.++.+.+.++ .+++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIG-PAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSS-SGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCC-CHHHHHHHHHHHHHhccCCCeEE
Confidence 4556778899999999999998888877777777765 3689999999999842 33445666778888876 7899
Q ss_pred EEecccCCCC
Q 031083 157 ETVSMFNNEW 166 (166)
Q Consensus 157 ~~Sa~~~~~v 166 (166)
++||++|.||
T Consensus 160 ~vSA~~g~gv 169 (308)
T 3iev_A 160 PISALKGANL 169 (308)
T ss_dssp ECBTTTTBSH
T ss_pred EEeCCCCCCH
Confidence 9999999885
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=1.2e-25 Score=152.79 Aligned_cols=147 Identities=20% Similarity=0.248 Sum_probs=102.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCC----------cccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRT 79 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~ 79 (166)
.+....+||+++|++|+|||||+++|.+.... ...++.+..........+. .+.+||+|| ++.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence 34567789999999999999999999988732 2233333333323333333 478999999 556666
Q ss_pred ccccccccc---cEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CcccchHHHHHHHHHhC-
Q 031083 80 ITTAYYRGA---MGILLVYDVTDESSF--NNIRNWMRNIDQHAADNVNKILVGNKADMDES-KRAVPTAKGQELADEYG- 152 (166)
Q Consensus 80 ~~~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~-~~~~~~~~~~~~~~~~~- 152 (166)
++..+++.+ |++++|+|+++..+. ..+..|+... +.|+++|+||+|+.+. ......+++++++...+
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE 167 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence 666666655 999999999875433 2333344332 6899999999999533 23344566677777755
Q ss_pred CeEEEEecccCCCC
Q 031083 153 IKFFETVSMFNNEW 166 (166)
Q Consensus 153 ~~~~~~Sa~~~~~v 166 (166)
++++++||++|+||
T Consensus 168 ~~~~~~Sa~~~~gv 181 (195)
T 3pqc_A 168 YTIIPTSSVTGEGI 181 (195)
T ss_dssp SCEEECCTTTCTTH
T ss_pred CceEEEecCCCCCH
Confidence 79999999999885
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=4.7e-26 Score=163.12 Aligned_cols=142 Identities=16% Similarity=0.178 Sum_probs=107.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccc----------cccc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------TTAY 84 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~ 84 (166)
.++|+++|.+|+|||||+|+|.+..+.....++.+.+.....+...+ ..+.+||+||+..+... ...+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 58999999999999999999999877656666666677777777766 45788999998876632 1222
Q ss_pred --cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEeccc
Q 031083 85 --YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMF 162 (166)
Q Consensus 85 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (166)
.+.+|++++|+|+++.++...+..++... +.|+++|+||+|+.+.. .. ..+.+.+++.++++++++||++
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~-~~-~~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQLLEL------GIPCIVALNMLDIAEKQ-NI-RIEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH------TCCEEEEEECHHHHHHT-TE-EECHHHHHHHHTSCEEECCCGG
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHHHHhc------CCCEEEEEECccchhhh-hH-HHHHHHHHHhcCCCEEEEEcCC
Confidence 26899999999999876655444444433 68999999999984321 11 2235788899999999999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
|.|+
T Consensus 153 g~gi 156 (274)
T 3i8s_A 153 GRGI 156 (274)
T ss_dssp GHHH
T ss_pred CCCH
Confidence 9864
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=3.8e-26 Score=163.25 Aligned_cols=142 Identities=16% Similarity=0.177 Sum_probs=104.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccc------cccccccc-
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR- 86 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 86 (166)
..++|+++|.+|+|||||+++|.+........+..+.+.... .++. ...+.+||+||+..+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~--~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSG--LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEE--ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEE--EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 358999999999999999999998765444445444433333 3343 4679999999988775 33455554
Q ss_pred -cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCC
Q 031083 87 -GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNE 165 (166)
Q Consensus 87 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (166)
.+|++++|+|+++.++. ..|...+.. .+.|+++|+||+|+... ..+. .++..+++.++++++++||++|+|
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~-~~~~-~~~~~l~~~lg~~vi~~SA~~g~g 150 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDG-QGKK-INVDKLSYHLGVPVVATSALKQTG 150 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCc-CCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence 69999999999986554 345455543 37899999999998432 2222 356889999999999999999988
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
+
T Consensus 151 i 151 (272)
T 3b1v_A 151 V 151 (272)
T ss_dssp H
T ss_pred H
Confidence 5
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=4.5e-25 Score=157.83 Aligned_cols=143 Identities=18% Similarity=0.160 Sum_probs=109.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--c
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--R 86 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~ 86 (166)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++. .+.+||+||+..+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 589999999999999999999998776666677777777777777774 589999999887665 344455 6
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
++|++++|+|+++.+ ....++..+.... ..|+++|+||+|+... ..... +...+++.++++++++||++|.|+
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~-~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKK-KGAKI-DIKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHH-HTCCC-CHHHHHHHHSSCEEECBGGGTBTH
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcc-cccHH-HHHHHHHHcCCcEEEEEeCCCCCH
Confidence 799999999999853 2333444444321 3899999999998332 22222 278889999999999999999874
No 124
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.90 E-value=2.3e-24 Score=149.70 Aligned_cols=150 Identities=11% Similarity=0.059 Sum_probs=96.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCC--CCCccccceeEeEEEEEEEC-CeEEEEEEEeCCCc----------ccc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSF--TTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQ----------ERF 77 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~----------~~~ 77 (166)
+....++|+|+|.+|+|||||+++|.+... .....+..+.+.. ..... .....+.+||+||. +.+
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN--YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE--EEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE--EEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 345679999999999999999999998763 2222222222222 22332 22357899999994 333
Q ss_pred cccccccccc---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcc-cchHHHHHHHHH---
Q 031083 78 RTITTAYYRG---AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTAKGQELADE--- 150 (166)
Q Consensus 78 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~-~~~~~~~~~~~~--- 150 (166)
......+++. +|++++|+|++++.+. ....++..+.. .+.|+++|+||+|+...... ...+++.+....
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 4444555555 8889999999975442 22334444443 36899999999998432111 112223333333
Q ss_pred ----hCCeEEEEecccCCCC
Q 031083 151 ----YGIKFFETVSMFNNEW 166 (166)
Q Consensus 151 ----~~~~~~~~Sa~~~~~v 166 (166)
.+++++++||++|.||
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv 198 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGL 198 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSH
T ss_pred cccCCCCeEEEeecCCCcCH
Confidence 4578999999999885
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=1.9e-23 Score=159.32 Aligned_cols=145 Identities=17% Similarity=0.127 Sum_probs=87.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAY 84 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 84 (166)
..++|+++|.+|+|||||+|+|.+... .....+.++.+.....+.+++ +.+.+|||||+.++...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 358899999999999999999998753 334445556666667777777 579999999987665433 446
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCC
Q 031083 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNN 164 (166)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (166)
++.+|++++|+|++++.+++.+..+...+.. .. +.|+++|+||+|+.... .. +.+++.+....+++++||++|+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~-~~piIvV~NK~Dl~~~~-~~---~~~~l~~~~~~~~i~vSAktg~ 383 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAA-HP-AAKFLTVANKLDRAANA-DA---LIRAIADGTGTEVIGISALNGD 383 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CT-TSEEEEEEECTTSCTTT-HH---HHHHHHHHHTSCEEECBTTTTB
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHh-cC-CCCEEEEEECcCCCCcc-ch---hHHHHHhcCCCceEEEEECCCC
Confidence 7899999999999998877543333222222 22 68999999999994432 21 2244555434789999999998
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
|+
T Consensus 384 GI 385 (476)
T 3gee_A 384 GI 385 (476)
T ss_dssp SH
T ss_pred CH
Confidence 85
No 126
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.90 E-value=3.6e-23 Score=156.85 Aligned_cols=152 Identities=16% Similarity=0.113 Sum_probs=104.6
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCCccccceeEeEEEEEE
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDS-------------------------------FTTSFITTIGIDFKIRTIE 58 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 58 (166)
.+....++|+++|.+++|||||+++|+... ...+..+..+++.....+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 345677999999999999999999995431 1122223345555555555
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhh---HH---HHHHHHHHHHHhcCCCCc-EEEEEeCCC
Q 031083 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FN---NIRNWMRNIDQHAADNVN-KILVGNKAD 131 (166)
Q Consensus 59 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iivv~~K~D 131 (166)
.++ ..+.|||+||+++|.......+..+|++|+|+|+++... ++ .....+..+. ..+.| +++++||+|
T Consensus 92 ~~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~---~~~v~~iIvviNK~D 166 (439)
T 3j2k_7 92 TEK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK---TAGVKHLIVLINKMD 166 (439)
T ss_pred cCC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH---HcCCCeEEEEeecCC
Confidence 544 589999999999998888888999999999999998532 11 1122222222 12566 999999999
Q ss_pred CCCCC-----cccchHHHHHHHHHhC------CeEEEEecccCCCC
Q 031083 132 MDESK-----RAVPTAKGQELADEYG------IKFFETVSMFNNEW 166 (166)
Q Consensus 132 l~~~~-----~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v 166 (166)
+.... .....+++..+.+.++ ++++++||++|+|+
T Consensus 167 l~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni 212 (439)
T 3j2k_7 167 DPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANL 212 (439)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccc
Confidence 84321 1223345566666665 46999999999986
No 127
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=7.9e-24 Score=155.97 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=90.4
Q ss_pred EEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCC----------hhhHHHHHHHHHHHHHh-cCCCCc
Q 031083 54 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWMRNIDQH-AADNVN 122 (166)
Q Consensus 54 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~p 122 (166)
...+.+++ +.+.+||++|+++++.+|..++++++++|||||+++ .+++++...|+..+... ...++|
T Consensus 185 ~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 185 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 34455554 789999999999999999999999999999999999 56789999999888663 335799
Q ss_pred EEEEEeCCCCCCCC--------------cccchHHHHHHHH-----------HhCCeEEEEecccCCCC
Q 031083 123 KILVGNKADMDESK--------------RAVPTAKGQELAD-----------EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 123 iivv~~K~Dl~~~~--------------~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v 166 (166)
++|++||+|+.++. ..+..+++.++++ ..++.+++|||++|+||
T Consensus 263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV 331 (353)
T 1cip_A 263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 331 (353)
T ss_dssp EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHH
T ss_pred EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhH
Confidence 99999999984221 1356788888887 34678999999999875
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=9.8e-23 Score=150.93 Aligned_cols=148 Identities=15% Similarity=0.162 Sum_probs=109.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---------ITTA 83 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~ 83 (166)
...++|+++|++|+|||||+++|.+........+..+.......+..++ ..+.+||+||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 5678999999999999999999998765333333333344444555554 5689999999754211 1123
Q ss_pred ccccccEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecc
Q 031083 84 YYRGAMGILLVYDVTDES--SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSM 161 (166)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (166)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+... . ..+++.++++..+++++++||+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~-~--~~~~~~~~~~~~~~~~~~iSA~ 318 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADE-E--NIKRLEKFVKEKGLNPIKISAL 318 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCH-H--HHHHHHHHHHHTTCCCEECBTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCCh-H--HHHHHHHHHHhcCCCeEEEeCC
Confidence 345699999999999877 67777888888877554 7899999999999332 2 2355677777888999999999
Q ss_pred cCCCC
Q 031083 162 FNNEW 166 (166)
Q Consensus 162 ~~~~v 166 (166)
+|+||
T Consensus 319 ~g~gi 323 (357)
T 2e87_A 319 KGTGI 323 (357)
T ss_dssp TTBTH
T ss_pred CCcCH
Confidence 99885
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=2.6e-24 Score=161.81 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=103.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccc-------c
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-------T 82 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~ 82 (166)
+....++|+++|..++|||||+++|.+..+. ....+..+.+.....+.+.+.. .+.+|||||++.+..+. .
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence 3456799999999999999999999987763 3334444555666666666543 78999999998776553 3
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEeccc
Q 031083 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMF 162 (166)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (166)
.++..+|++++|+|+...+ ....|+..+... +.|+++|+||+|+...... +.++++++.++++++++||++
T Consensus 109 ~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~---~~~~~l~~~~g~~v~~vSAkt 179 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE---ELKGLYESRYEAKVLLVSALQ 179 (423)
T ss_dssp HHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT---HHHHHSSCCTTCCCCCCSSCC
T ss_pred HHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH---HHHHHHHHHcCCCEEEEECCC
Confidence 3678899999999994333 334555655543 7899999999999544332 667778888899999999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
|+|+
T Consensus 180 g~gI 183 (423)
T 3qq5_A 180 KKGF 183 (423)
T ss_dssp TTST
T ss_pred CCCH
Confidence 9886
No 130
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.9e-23 Score=142.02 Aligned_cols=114 Identities=18% Similarity=0.312 Sum_probs=87.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCC---CccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccccc-
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG- 87 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~- 87 (166)
....++|+++|++|+|||||++++.+..+.. ...++.+. +...+.+.+||+||++.+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 4667999999999999999999999987644 12222221 1133578999999999988888777776
Q ss_pred ---ccEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCC
Q 031083 88 ---AMGILLVYDVT-DESSFNNIRNWMRNIDQH----AADNVNKILVGNKADMDE 134 (166)
Q Consensus 88 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~piivv~~K~Dl~~ 134 (166)
+|++++|||++ ++.++..+..|+..+... ...+.|+++|+||+|+.+
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 89999999999 899999998888777553 335899999999999944
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=1.3e-23 Score=159.28 Aligned_cols=148 Identities=16% Similarity=0.152 Sum_probs=102.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCc----------cccccc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTI 80 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~ 80 (166)
.+..+||+++|.+++|||||+|++.+..+. ....+.++.+.....+.+++. .+.+|||||+ +.|..+
T Consensus 172 ~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 249 (436)
T 2hjg_A 172 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 249 (436)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHH
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHH
Confidence 346799999999999999999999987753 333444555565566777774 5899999997 344433
Q ss_pred cc-cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHH-HHHHH----hCCe
Q 031083 81 TT-AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ-ELADE----YGIK 154 (166)
Q Consensus 81 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~-~~~~~----~~~~ 154 (166)
+. .+++.+|++++|+|++++.+++.. .|+..+.. .+.|+++|+||+|+.+. .....++.. ++.+. .+++
T Consensus 250 ~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~l~~~~~~~ 324 (436)
T 2hjg_A 250 RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDK-DESTMKEFEENIRDHFQFLDYAP 324 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCC-CTTHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCc-chHHHHHHHHHHHHhcccCCCCC
Confidence 33 467889999999999998887665 45555543 36899999999999543 333223332 22232 3689
Q ss_pred EEEEecccCCCC
Q 031083 155 FFETVSMFNNEW 166 (166)
Q Consensus 155 ~~~~Sa~~~~~v 166 (166)
++++||++|.||
T Consensus 325 ~~~~SA~tg~~v 336 (436)
T 2hjg_A 325 ILFMSALTKKRI 336 (436)
T ss_dssp EEECCTTTCTTG
T ss_pred EEEEecccCCCH
Confidence 999999999986
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.89 E-value=4.8e-24 Score=156.58 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=108.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc----ccccccccccc---cc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----RFRTITTAYYR---GA 88 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~---~~ 88 (166)
.+|+|+|.+++|||||+++|.+........+..+.......+.+++. ..+.+||+||.. .+..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 46899999999999999999987643233333334444455565542 368999999953 33344455554 49
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC--CeEEEEecc
Q 031083 89 MGILLVYDVTD---ESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFFETVSM 161 (166)
Q Consensus 89 d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 161 (166)
|++|+|+|+++ +++++.+..|+.++..... .+.|+++|+||+|+... .++.+++++.++ .+++++||+
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~-----~e~~~~l~~~l~~~~~v~~iSA~ 312 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AENLEAFKEKLTDDYPVFPISAV 312 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHHHHHHHHHCCSCCCBCCCSSC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC-----HHHHHHHHHHhhcCCCEEEEECC
Confidence 99999999998 7889999999998877542 47899999999998432 245677777777 689999999
Q ss_pred cCCCC
Q 031083 162 FNNEW 166 (166)
Q Consensus 162 ~~~~v 166 (166)
+++|+
T Consensus 313 tg~gi 317 (342)
T 1lnz_A 313 TREGL 317 (342)
T ss_dssp CSSTT
T ss_pred CCcCH
Confidence 99986
No 133
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=2.5e-23 Score=158.58 Aligned_cols=148 Identities=17% Similarity=0.156 Sum_probs=105.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTI 80 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 80 (166)
.+..++|+++|.+++|||||+++|.+... .....++++.+.....+..++. .+.+||||| ++.|..+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 45679999999999999999999997642 2333444445555556677774 689999999 5666665
Q ss_pred cc-cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHh-----CCe
Q 031083 81 TT-AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY-----GIK 154 (166)
Q Consensus 81 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~-----~~~ 154 (166)
+. .+++.+|++++|+|+++..+ +....|+..+.. .+.|+++|+||+|+.+ ......+++++.+++. +++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~ 344 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVD-KDESTMKEFEENIRDHFQFLDYAP 344 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSC-CCSSHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCC-CchHHHHHHHHHHHHhcccCCCCC
Confidence 54 37789999999999997443 223344444443 3689999999999943 3445566677766665 589
Q ss_pred EEEEecccCCCC
Q 031083 155 FFETVSMFNNEW 166 (166)
Q Consensus 155 ~~~~Sa~~~~~v 166 (166)
++++||++|.||
T Consensus 345 ~~~~SA~~g~gv 356 (456)
T 4dcu_A 345 ILFMSALTKKRI 356 (456)
T ss_dssp EEECCTTTCTTG
T ss_pred EEEEcCCCCcCH
Confidence 999999999986
No 134
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=1.3e-22 Score=146.84 Aligned_cols=144 Identities=16% Similarity=0.126 Sum_probs=97.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCC-CccccceeEeEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTA 83 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~ 83 (166)
-+..+|+++|.+|+|||||+|+|++..+.. ...+.++.......+..++ .++.+|||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHH
Confidence 345689999999999999999999987743 2223233333333334443 6899999999765 3344556
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHh-C-CeEEEEec
Q 031083 84 YYRGAMGILLVYDVTDESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY-G-IKFFETVS 160 (166)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa 160 (166)
+++.+|++++|+|++++.+.. ..|+ ..+.... .+.|+++|+||+|+...... ..+..+.+ + .+++++||
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~iSA 154 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE-----AMKAYHELLPEAEPRMLSA 154 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH-----HHHHHHHTSTTSEEEECCT
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH-----HHHHHHHhcCcCcEEEEeC
Confidence 788999999999999865433 3343 4454432 36899999999998432110 23333333 3 47899999
Q ss_pred ccCCCC
Q 031083 161 MFNNEW 166 (166)
Q Consensus 161 ~~~~~v 166 (166)
++|.|+
T Consensus 155 ~~g~gv 160 (301)
T 1wf3_A 155 LDERQV 160 (301)
T ss_dssp TCHHHH
T ss_pred CCCCCH
Confidence 998763
No 135
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.89 E-value=4.4e-23 Score=150.17 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=88.5
Q ss_pred EEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECC----------ChhhHHHHHHHHHHHHHh-cCCCC
Q 031083 53 KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWMRNIDQH-AADNV 121 (166)
Q Consensus 53 ~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~ 121 (166)
....+.+++ +.+.+||++|+++++.+|..++++++++|||||++ +.+++++...|+..+... ...++
T Consensus 158 ~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~ 235 (327)
T 3ohm_A 158 IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 235 (327)
T ss_dssp EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence 344455555 78999999999999999999999999999999665 677888888888888653 34589
Q ss_pred cEEEEEeCCCCCCCC---------------cccchHHHHHHH----------HHhCCeEEEEecccCCCC
Q 031083 122 NKILVGNKADMDESK---------------RAVPTAKGQELA----------DEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 122 piivv~~K~Dl~~~~---------------~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v 166 (166)
|++|++||+|+.++. .....+++.++. ...++.+++|||++++||
T Consensus 236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV 305 (327)
T 3ohm_A 236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENI 305 (327)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHH
T ss_pred eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHH
Confidence 999999999984321 135677888874 345678899999998775
No 136
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.88 E-value=6.1e-23 Score=157.11 Aligned_cols=145 Identities=15% Similarity=0.117 Sum_probs=101.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCC-------CCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 85 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 85 (166)
-..++|+++|..++|||||+++|.+.. +..+..+..+++.....+.+++ ..+.+||+||+++|.......+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 457999999999999999999999866 2333333344444444455555 6799999999999988888889
Q ss_pred ccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-cccchHHHHHHHHHh----CCeEEE
Q 031083 86 RGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK-RAVPTAKGQELADEY----GIKFFE 157 (166)
Q Consensus 86 ~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~-~~~~~~~~~~~~~~~----~~~~~~ 157 (166)
..+|++++|+|+++ +.+.+.+. .+.. .+.|+++++||+|+.+.. .+...+++.++++.. +.++++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 167 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 167 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred hhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence 99999999999998 55554443 1211 267889999999995421 122345566666665 579999
Q ss_pred EecccCCCC
Q 031083 158 TVSMFNNEW 166 (166)
Q Consensus 158 ~Sa~~~~~v 166 (166)
+||++|+|+
T Consensus 168 vSA~~g~gI 176 (482)
T 1wb1_A 168 ISAKTGFGV 176 (482)
T ss_dssp CCTTTCTTH
T ss_pred EECcCCCCH
Confidence 999999884
No 137
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.88 E-value=2.3e-23 Score=157.82 Aligned_cols=151 Identities=19% Similarity=0.217 Sum_probs=103.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC--CCCCCc-----------------------------cccceeEeEEEEEEECC
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDD--SFTTSF-----------------------------ITTIGIDFKIRTIELDG 61 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 61 (166)
...+||+++|..++|||||+++|+.. .+.... .+..+++.....+..+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~- 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK- 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-
Confidence 45799999999999999999999864 332110 1122333333333333
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhc----CCC-CcEEEEEeCCCCCCCC
Q 031083 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA----ADN-VNKILVGNKADMDESK 136 (166)
Q Consensus 62 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~-~piivv~~K~Dl~~~~ 136 (166)
...+.+||+||+++|...+..++..+|++|+|+|+++ .+|+....|..+..++. ..+ .++++++||+|+.+..
T Consensus 83 -~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 83 -KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp -SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred -CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 3679999999999998888889999999999999998 67775543322222211 113 3699999999995421
Q ss_pred c-----ccchHHHHHHHHHhC-----CeEEEEecccCCCC
Q 031083 137 R-----AVPTAKGQELADEYG-----IKFFETVSMFNNEW 166 (166)
Q Consensus 137 ~-----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v 166 (166)
. ....++++++++.++ ++++++||++|+|+
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v 200 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNI 200 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTT
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccc
Confidence 1 223466778888776 68999999999985
No 138
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=7.9e-23 Score=156.10 Aligned_cols=140 Identities=21% Similarity=0.254 Sum_probs=103.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc-ccccc--------cccc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-RFRTI--------TTAY 84 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~~--------~~~~ 84 (166)
.++|+++|.+++|||||+|+|.+... .....+.++.++....+.+++ ..+.+|||+|.. .+... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 38999999999999999999998753 234445555666667777777 568999999987 55421 2356
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCC
Q 031083 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNN 164 (166)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (166)
++.+|++++|+|++++.+++... ++..+ .+.|+++|+||+|+.+. +..+++.+++. .+++++++||++|+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~---~~~~~~~~~~~-~~~~~i~iSAktg~ 390 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK---INEEEIKNKLG-TDRHMVKISALKGE 390 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC---CCHHHHHHHHT-CSTTEEEEEGGGTC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc---cCHHHHHHHhc-CCCcEEEEECCCCC
Confidence 78999999999999987775532 33332 26799999999999432 33445554432 34789999999998
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
|+
T Consensus 391 Gi 392 (482)
T 1xzp_A 391 GL 392 (482)
T ss_dssp CH
T ss_pred CH
Confidence 75
No 139
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.88 E-value=1.1e-22 Score=156.05 Aligned_cols=149 Identities=16% Similarity=0.109 Sum_probs=96.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCCccccceeEeEEEEEEECC
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-------------------------------TTSFITTIGIDFKIRTIELDG 61 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (166)
...+||+++|.+++|||||+++|+.... ..+..+..+++.....+..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec--
Confidence 4579999999999999999999975411 1111112222233333333
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHH------HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031083 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN------IRNWMRNIDQHAADNVNKILVGNKADMDES 135 (166)
Q Consensus 62 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~piivv~~K~Dl~~~ 135 (166)
....+.|||+||+++|......++..+|++|+|+|+++..+... ....+.... ... ..|+++|+||+|+.+.
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~-~~~-~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SLG-IHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHH-HTT-CCCEEEEEECGGGGTT
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHH-HcC-CCcEEEEEECcCcccc
Confidence 34679999999999999988899999999999999998754322 111122222 111 3469999999999542
Q ss_pred Ccccch----HHHHHHHHHhC-----CeEEEEecccCCCC
Q 031083 136 KRAVPT----AKGQELADEYG-----IKFFETVSMFNNEW 166 (166)
Q Consensus 136 ~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v 166 (166)
.+... +++..+.+..+ ++++++||++|+|+
T Consensus 187 -~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi 225 (483)
T 3p26_A 187 -SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGV 225 (483)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTS
T ss_pred -hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCc
Confidence 22222 33444444444 58999999999986
No 140
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.88 E-value=7.4e-23 Score=150.79 Aligned_cols=105 Identities=13% Similarity=0.188 Sum_probs=82.3
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCC
Q 031083 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWMRNIDQHA-ADNVNKILVGNKA 130 (166)
Q Consensus 62 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piivv~~K~ 130 (166)
..+.+.+||++|+++++.+|..++++++++|+|||++ +.+++++...|+..+.... ..++|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 7889999999999887642 3589999999999
Q ss_pred CCCCCCcc--------------------cchHHHHHHHHH----------------hCCeEEEEecccCCCC
Q 031083 131 DMDESKRA--------------------VPTAKGQELADE----------------YGIKFFETVSMFNNEW 166 (166)
Q Consensus 131 Dl~~~~~~--------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v 166 (166)
|+.++... ...+++.+++++ ..+.+++|||++++||
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV 332 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLV 332 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhH
Confidence 98432110 124677777543 1235689999999875
No 141
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.88 E-value=5.8e-23 Score=156.78 Aligned_cols=153 Identities=14% Similarity=0.082 Sum_probs=90.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc--CCCCC-----------------------------CccccceeEeEEEEEEEC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSD--DSFTT-----------------------------SFITTIGIDFKIRTIELD 60 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 60 (166)
....++|+++|..++|||||+++|.. +.+.. +.....+++.....+..+
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 35678999999999999999999974 22210 001112222222234444
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChh---hHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 031083 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESK 136 (166)
Q Consensus 61 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-iivv~~K~Dl~~~~ 136 (166)
+ ..+.|||+||+++|...+...+..+|++|+|+|+++.. +|+....+...+......++| +++++||+|+....
T Consensus 120 ~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 120 H--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp S--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred C--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence 4 57899999999999988888899999999999999852 333222222222221223666 99999999994322
Q ss_pred c-----ccchHHHHHHHHHh-C------CeEEEEecccCCCC
Q 031083 137 R-----AVPTAKGQELADEY-G------IKFFETVSMFNNEW 166 (166)
Q Consensus 137 ~-----~~~~~~~~~~~~~~-~------~~~~~~Sa~~~~~v 166 (166)
. ....+++.++++.. + ++++++||++|+|+
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i 239 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNV 239 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTT
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccc
Confidence 1 22334677777776 3 56999999999985
No 142
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.88 E-value=7e-22 Score=146.33 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=98.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc---------ccccccccccc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAYYRG 87 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~ 87 (166)
.|+++|++|+|||||+|+|.+..+.....+..+.+.....+.+++ ..+.+||++|.-. +...+ ..+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence 499999999999999999999876544445555566667788887 4678999999621 22222 24678
Q ss_pred ccEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHh---CCeEEEEeccc
Q 031083 88 AMGILLVYDVTDES--SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY---GIKFFETVSMF 162 (166)
Q Consensus 88 ~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~ 162 (166)
+|++++|+|++++. ..+.+..|...+......+.|+++|+||+|+.+.........+..+++.+ +.+++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999999877 55556556555555444578999999999984332111112344455666 24789999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
|+|+
T Consensus 338 g~gi 341 (364)
T 2qtf_A 338 RTNL 341 (364)
T ss_dssp TBSH
T ss_pred CcCH
Confidence 9874
No 143
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=2.3e-21 Score=145.68 Aligned_cols=153 Identities=11% Similarity=0.087 Sum_probs=104.6
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEE-------EE---------EE---CCeEEEEEEEeC
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIR-------TI---------EL---DGKRIKLQIWDT 71 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~i~D~ 71 (166)
.....++|+++|.+++|||||+++|.+.......... ....... .+ .. ......+.+||+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 3456799999999999999999999985443211100 0000000 00 00 112368999999
Q ss_pred CCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc-ccchHHHHHHHHH
Q 031083 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAKGQELADE 150 (166)
Q Consensus 72 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~-~~~~~~~~~~~~~ 150 (166)
||++.|.......+..+|++++|+|+++..++.....++..+.... ..|+++|+||+|+.+... ....+++.++.+.
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999988889999999999999998776677777776665443 248999999999943221 1122333333333
Q ss_pred h---CCeEEEEecccCCCC
Q 031083 151 Y---GIKFFETVSMFNNEW 166 (166)
Q Consensus 151 ~---~~~~~~~Sa~~~~~v 166 (166)
. +++++++||++|+|+
T Consensus 161 ~~~~~~~ii~vSA~~g~gi 179 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINI 179 (403)
T ss_dssp STTTTCCEEECBTTTTBSH
T ss_pred hCCCCCEEEEEECCCCcCh
Confidence 2 578999999999885
No 144
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=1.7e-21 Score=146.53 Aligned_cols=149 Identities=13% Similarity=0.123 Sum_probs=95.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC---CCCCCccc--cceeEeEEEEEEE-------------C--C----eEEEEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD---SFTTSFIT--TIGIDFKIRTIEL-------------D--G----KRIKLQ 67 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 67 (166)
....++|+++|..++|||||+++|.+. .+..+..+ |....+....+.. + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 356799999999999999999999853 33334334 3333333322211 1 1 136899
Q ss_pred EEeCCCccccccccccccccccEEEEEEECCC----hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc-ccchH
Q 031083 68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTA 142 (166)
Q Consensus 68 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~-~~~~~ 142 (166)
+||+||++.|...+...+..+|++|+|+|+++ +++.+.+..+ ... . ..|+++++||+|+.+... ....+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l-~-~~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL-G-IDKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT-T-CCCEEEEEECTTSSCTTTTTTHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc-C-CCeEEEEEEccCCCCHHHHHHHHH
Confidence 99999999988877777888999999999995 4455544322 111 1 347999999999955432 23456
Q ss_pred HHHHHHHHh---CCeEEEEecccCCCC
Q 031083 143 KGQELADEY---GIKFFETVSMFNNEW 166 (166)
Q Consensus 143 ~~~~~~~~~---~~~~~~~Sa~~~~~v 166 (166)
+++++++.. +++++++||++|+|+
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi 185 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEANI 185 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------CH
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCCCH
Confidence 677777653 579999999999874
No 145
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.87 E-value=4.5e-22 Score=155.20 Aligned_cols=147 Identities=22% Similarity=0.284 Sum_probs=101.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCC--CCC-----Cccc------cceeEeE--EEEEEE---CCeEEEEEEEeCCCc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDS--FTT-----SFIT------TIGIDFK--IRTIEL---DGKRIKLQIWDTAGQ 74 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~-----~~~~------~~~~~~~--~~~~~~---~~~~~~~~i~D~~g~ 74 (166)
+...||+++|..++|||||+++|.... ... .... ..++.+. ...+.+ ++..+.+.+|||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 457899999999999999999998621 110 0000 1112222 222333 556789999999999
Q ss_pred cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-
Q 031083 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI- 153 (166)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~- 153 (166)
..|...+...++.+|++|+|+|+++..+.+....|+.... .+.|+++|+||+|+.... ..+..+++...+++
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~---~~~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD---PERVAEEIEDIVGID 154 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc---HHHHHHHHHHHhCCC
Confidence 9999988899999999999999999777766666665553 378999999999995432 23335667777776
Q ss_pred --eEEEEecccCCCC
Q 031083 154 --KFFETVSMFNNEW 166 (166)
Q Consensus 154 --~~~~~Sa~~~~~v 166 (166)
.++++||++|.||
T Consensus 155 ~~~vi~vSAktg~GI 169 (599)
T 3cb4_D 155 ATDAVRCSAKTGVGV 169 (599)
T ss_dssp CTTCEEECTTTCTTH
T ss_pred cceEEEeecccCCCc
Confidence 4999999999875
No 146
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=7.3e-22 Score=149.64 Aligned_cols=149 Identities=18% Similarity=0.163 Sum_probs=102.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC--CCC----------ccc---------------------cceeEeEEEEEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF--TTS----------FIT---------------------TIGIDFKIRTIE 58 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~----------~~~---------------------~~~~~~~~~~~~ 58 (166)
....+||+++|..++|||||+++|..... ... ... ..+++.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 35679999999999999999999986431 000 001 112222222333
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCCc
Q 031083 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNV-NKILVGNKADMDESKR 137 (166)
Q Consensus 59 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piivv~~K~Dl~~~~~ 137 (166)
.++ ..+.+||+||+++|...+..++..+|++|+|+|+++.... ....++..+... +. |+++|+||+|+.+...
T Consensus 101 ~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~ 174 (434)
T 1zun_B 101 TAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMDLNGFDE 174 (434)
T ss_dssp CSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTTTTTSCH
T ss_pred cCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCcCCcccH
Confidence 333 5789999999999988888889999999999999985432 233344333322 33 6999999999954221
Q ss_pred c---cchHHHHHHHHHhC-----CeEEEEecccCCCC
Q 031083 138 A---VPTAKGQELADEYG-----IKFFETVSMFNNEW 166 (166)
Q Consensus 138 ~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v 166 (166)
. ...+++.++++.++ ++++++||++|+|+
T Consensus 175 ~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi 211 (434)
T 1zun_B 175 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNV 211 (434)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTT
T ss_pred HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCc
Confidence 1 13456777888887 68999999999985
No 147
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.87 E-value=2.4e-22 Score=148.49 Aligned_cols=110 Identities=18% Similarity=0.192 Sum_probs=81.5
Q ss_pred EEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCC----------hhhHHHHHHHHHHHHHh-cCCCCcE
Q 031083 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWMRNIDQH-AADNVNK 123 (166)
Q Consensus 55 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~pi 123 (166)
..+.+++ +.+.+||++|+++++..|..++++++++|||||+++ .+++++...|+..+... ...++|+
T Consensus 194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 271 (362)
T ss_dssp EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence 3445554 789999999999999999999999999999999999 77999999999988664 3458999
Q ss_pred EEEEeCCCCCCCC---------------cccchHHHHHHHH-----------HhCCeEEEEecccCCCC
Q 031083 124 ILVGNKADMDESK---------------RAVPTAKGQELAD-----------EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 124 ivv~~K~Dl~~~~---------------~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v 166 (166)
+|++||+|+.++. ..+..+++..++. ..++.+++|||++|+||
T Consensus 272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV 340 (362)
T 1zcb_A 272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENI 340 (362)
T ss_dssp EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHH
T ss_pred EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhH
Confidence 9999999984321 1256677877762 34578999999999875
No 148
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.87 E-value=1.7e-22 Score=144.65 Aligned_cols=151 Identities=20% Similarity=0.222 Sum_probs=88.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCc-------cccceeEeEEEEEEECCeEEEEEEEeCCCccc-------
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSF-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER------- 76 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------- 76 (166)
....++|+++|.+|+|||||+|+|++.... ..+ .++.+.+.....+..++..+.+.+|||||...
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 356799999999999999999998875543 333 45556566656666666667999999999632
Q ss_pred ccccc-------ccccc-------------cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031083 77 FRTIT-------TAYYR-------------GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136 (166)
Q Consensus 77 ~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~ 136 (166)
+..+. ..++. .+|+++++++.+.......-..++..+.. +.|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 21111 11222 37789999977653222222334555533 78999999999983221
Q ss_pred -cccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 137 -RAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 137 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
.....+++.+.....+++++++||++++++
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~ 191 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEE 191 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC--------
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhH
Confidence 112223455566677899999999998874
No 149
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=7.6e-22 Score=148.58 Aligned_cols=152 Identities=16% Similarity=0.193 Sum_probs=102.2
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHhcC---CCCCCccc--cceeEeEEEEEEE-------------C--C----eEE
Q 031083 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDD---SFTTSFIT--TIGIDFKIRTIEL-------------D--G----KRI 64 (166)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~ 64 (166)
+......++|+++|..++|||||+++|.+. .+..+..+ |....+....+.. + + ...
T Consensus 4 ~~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~ 83 (410)
T 1kk1_A 4 RKSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVR 83 (410)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEE
T ss_pred cccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCccccccc
Confidence 345577899999999999999999999953 33334344 3332333222211 1 1 136
Q ss_pred EEEEEeCCCccccccccccccccccEEEEEEECCC----hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc-cc
Q 031083 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AV 139 (166)
Q Consensus 65 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~-~~ 139 (166)
.+.+||+||++.|.......+..+|++|+|+|+++ +.+.+.+..+ ..+ . ..|+++++||+|+.+... ..
T Consensus 84 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~~---~--~~~iivviNK~Dl~~~~~~~~ 157 (410)
T 1kk1_A 84 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII---G--QKNIIIAQNKIELVDKEKALE 157 (410)
T ss_dssp EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH---T--CCCEEEEEECGGGSCHHHHHH
T ss_pred EEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc---C--CCcEEEEEECccCCCHHHHHH
Confidence 89999999999988777777888999999999995 4455444322 222 1 347999999999954321 12
Q ss_pred chHHHHHHHHH---hCCeEEEEecccCCCC
Q 031083 140 PTAKGQELADE---YGIKFFETVSMFNNEW 166 (166)
Q Consensus 140 ~~~~~~~~~~~---~~~~~~~~Sa~~~~~v 166 (166)
..++++++.+. .+++++++||++|+|+
T Consensus 158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi 187 (410)
T 1kk1_A 158 NYRQIKEFIEGTVAENAPIIPISALHGANI 187 (410)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSH
T ss_pred HHHHHHHHHHhcCcCCCeEEEeeCCCCCCH
Confidence 34455666654 3579999999999874
No 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=5.7e-22 Score=150.42 Aligned_cols=138 Identities=24% Similarity=0.282 Sum_probs=91.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCcccc---------cccccccc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITTAYY 85 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~ 85 (166)
.+|+++|.+++|||||+|+|.+.... ....+..+.+.....+.+++. .+.+|||+|.+.. ......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987643 344455555666677778774 5789999997642 23345678
Q ss_pred ccccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHH-HHHHHHhCC-eEEEEecc
Q 031083 86 RGAMGILLVYDVTDESSFNN--IRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKG-QELADEYGI-KFFETVSM 161 (166)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~ 161 (166)
+.+|++++|+|++++.+... +..|+.. .+.|+++|+||+|+... . ..++ .++. .+++ +++++||+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~~~---~-~~~~~~~~~-~lg~~~~~~iSA~ 148 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK------STVDTILVANKAENLRE---F-EREVKPELY-SLGFGEPIPVSAE 148 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSHHH---H-HHHTHHHHG-GGSSCSCEECBTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCccc---c-HHHHHHHHH-hcCCCCEEEEecc
Confidence 89999999999987554332 2333322 26799999999998321 1 1223 4444 5676 79999999
Q ss_pred cCCCC
Q 031083 162 FNNEW 166 (166)
Q Consensus 162 ~~~~v 166 (166)
+|.|+
T Consensus 149 ~g~gv 153 (439)
T 1mky_A 149 HNINL 153 (439)
T ss_dssp TTBSH
T ss_pred CCCCH
Confidence 99875
No 151
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=1.1e-21 Score=152.74 Aligned_cols=147 Identities=18% Similarity=0.250 Sum_probs=103.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC--CCCC-----Cc--------cccceeEeEEEEEEE---CCeEEEEEEEeCCCc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDD--SFTT-----SF--------ITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ 74 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~~-----~~--------~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~ 74 (166)
+...+|+++|..++|||||+++|... .... .. ....++......+.+ ++..+.+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 56789999999999999999999752 1111 00 011111111112222 456689999999999
Q ss_pred cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-
Q 031083 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI- 153 (166)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~- 153 (166)
..|...+...++.+|++|+|+|+++..+.+....|+.... .++|+++|+||+|+.... ..+..+++.+.+++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~---~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD---VDRVKKQIEEVLGLD 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHTSCCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC---HHHHHHHHHHhhCCC
Confidence 9998888888999999999999999877777776766553 378999999999995432 22335667777776
Q ss_pred --eEEEEecccCCCC
Q 031083 154 --KFFETVSMFNNEW 166 (166)
Q Consensus 154 --~~~~~Sa~~~~~v 166 (166)
.++++||++|.||
T Consensus 157 ~~~vi~vSAktg~GI 171 (600)
T 2ywe_A 157 PEEAILASAKEGIGI 171 (600)
T ss_dssp GGGCEECBTTTTBSH
T ss_pred cccEEEEEeecCCCc
Confidence 4999999999885
No 152
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=7.9e-22 Score=154.55 Aligned_cols=153 Identities=15% Similarity=0.091 Sum_probs=100.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCc-------------------------------cccceeEeEEEEEEEC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSF-------------------------------ITTIGIDFKIRTIELD 60 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 60 (166)
....+||+++|.+++|||||+++|++....... .+..+++.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 355799999999999999999999865322111 1222333333334444
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhh---HHHHHHHHHHHHHhcCCC-CcEEEEEeCCCCCCCC
Q 031083 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FNNIRNWMRNIDQHAADN-VNKILVGNKADMDESK 136 (166)
Q Consensus 61 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~-~piivv~~K~Dl~~~~ 136 (166)
+ .++.|||+||+++|.......+..+|++|+|+|+++... +.....+...+......+ .|+++|+||+|+.+..
T Consensus 244 ~--~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 244 R--ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp S--CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTC
T ss_pred C--ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchh
Confidence 3 679999999999999888889999999999999997421 100111111111111123 3599999999995421
Q ss_pred cc---cchHHHHHHHHHhC-----CeEEEEecccCCCC
Q 031083 137 RA---VPTAKGQELADEYG-----IKFFETVSMFNNEW 166 (166)
Q Consensus 137 ~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v 166 (166)
.. ...+++..+...++ ++++++||++|+||
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI 359 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGV 359 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTT
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCc
Confidence 11 12344555555554 58999999999986
No 153
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.86 E-value=8e-23 Score=155.70 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=101.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC--CCCCC-----------------------------ccccceeEeEEEEEEECC
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDD--SFTTS-----------------------------FITTIGIDFKIRTIELDG 61 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 61 (166)
...++|+++|.+++|||||+++|++. .+... .....+++.....+..++
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45799999999999999999999863 22110 001122222223334333
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECCChh---hHH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 031083 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFN---NIRNWMRNIDQHAADNVN-KILVGNKADMDE 134 (166)
Q Consensus 62 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iivv~~K~Dl~~ 134 (166)
..+.+||+||+++|.......+..+|++|+|+|+++.. +|+ .....+..... .+.| +++++||+|+.+
T Consensus 85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 67999999999999888888899999999999999753 221 22222222222 2455 999999999953
Q ss_pred CCc---ccchHHHHHHHHHhC-----CeEEEEecccCCCC
Q 031083 135 SKR---AVPTAKGQELADEYG-----IKFFETVSMFNNEW 166 (166)
Q Consensus 135 ~~~---~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v 166 (166)
... ....+++.++++.++ ++++++||++|+|+
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv 199 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM 199 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCc
Confidence 111 123456677777776 68999999999986
No 154
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=2.5e-21 Score=135.97 Aligned_cols=147 Identities=17% Similarity=0.172 Sum_probs=95.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccc--cceeEeEEEEEEECCeEEEEEEEeCCCcc-----------cc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFIT--TIGIDFKIRTIELDGKRIKLQIWDTAGQE-----------RF 77 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------~~ 77 (166)
+....++|+++|.+|+|||||++++.+..+.....+ +.+.......+.+++ ..+.+|||||.. .+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 345679999999999999999999999887655544 344455556666766 468999999932 33
Q ss_pred ccccccccccccEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccc------hHHHHHHHH
Q 031083 78 RTITTAYYRGAMGILLVYDVTDESS--FNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP------TAKGQELAD 149 (166)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~------~~~~~~~~~ 149 (166)
.......++.+|++++|+|+++... ...+..+...+.... ..|+++|+||+|+.... .+. .++++++.+
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~--~~~~iiv~nK~D~~~~~-~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERA--RSFMILIFTRKDDLGDT-NLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHH--GGGEEEEEECGGGC-------------CHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhc--cceEEEEEeCCccCCcc-cHHHHHHhchHHHHHHHH
Confidence 3344455667899999999876433 222222222222211 35899999999984332 111 346788899
Q ss_pred HhCCeEEEEeccc
Q 031083 150 EYGIKFFETVSMF 162 (166)
Q Consensus 150 ~~~~~~~~~Sa~~ 162 (166)
.++..|+..++..
T Consensus 180 ~~~~~~~~~~~~~ 192 (239)
T 3lxx_A 180 IFGDRYCALNNKA 192 (239)
T ss_dssp HHSSSEEECCTTC
T ss_pred HcCCEEEEEECCC
Confidence 9998888777654
No 155
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.86 E-value=1.3e-21 Score=138.96 Aligned_cols=151 Identities=16% Similarity=0.145 Sum_probs=94.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCC-CCCCcccc-ceeEeEEEEEEECCeEEEEEEEeCCCcccccccc-------
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDS-FTTSFITT-IGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT------- 81 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------- 81 (166)
+....++|+|+|.+|+|||||++++.+.. +.....++ .+.......+.+++ ..+.+|||||+..+....
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 34567999999999999999999999876 44443343 34445555566666 568999999976543221
Q ss_pred ----ccccccccEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEe-CCCCCCCCcccch-------HHHHHHH
Q 031083 82 ----TAYYRGAMGILLVYDVTDESS-FNNIRNWMRNIDQHAADNVNKILVGN-KADMDESKRAVPT-------AKGQELA 148 (166)
Q Consensus 82 ----~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piivv~~-K~Dl~~~~~~~~~-------~~~~~~~ 148 (166)
...++.+|++++|+|+++... ...+..++..+..... ..|+++|+| |+|+... .... .+++++.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~vv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA-MGHTIVLFTHKEDLNGG--SLMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG-GGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh-hccEEEEEEcccccCCc--cHHHHHHhcchHHHHHHH
Confidence 225678999999999986222 1222233333321111 345666666 9999532 1211 3355677
Q ss_pred HHhCCe---E--EEEecccCCCC
Q 031083 149 DEYGIK---F--FETVSMFNNEW 166 (166)
Q Consensus 149 ~~~~~~---~--~~~Sa~~~~~v 166 (166)
+.++.. + +++||++|.||
T Consensus 173 ~~~~~~~~~~~~~~~SA~~~~gv 195 (260)
T 2xtp_A 173 AACGGRICAFNNRAEGSNQDDQV 195 (260)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHH
T ss_pred HHhCCeEEEecCcccccccHHHH
Confidence 777643 2 68899887653
No 156
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.86 E-value=5.4e-24 Score=163.85 Aligned_cols=148 Identities=15% Similarity=0.171 Sum_probs=104.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 93 (166)
+.++|+++|.+++|||||+++|.+..+.....++.+.++....+..++. ..+.||||||++.|..++..++..+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4578999999999999999999986655444555554444334443221 368999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHH---HHHh--CCeEEEEecccCCCC
Q 031083 94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQEL---ADEY--GIKFFETVSMFNNEW 166 (166)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~---~~~~--~~~~~~~Sa~~~~~v 166 (166)
|+|+++........ .+..+. ..+.|+++++||+|+++........+...+ +..+ .++++++||++|.|+
T Consensus 82 VVDa~dg~~~qt~e-~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 82 VVAADDGVMKQTVE-SIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp ECBSSSCCCHHHHH-HHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred EEECCCCccHHHHH-HHHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence 99999855443332 222222 347899999999999654433333333322 1222 258999999999986
No 157
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.4e-22 Score=150.08 Aligned_cols=149 Identities=24% Similarity=0.387 Sum_probs=82.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCC-CCCCcc--------ccceeEeEEEEEEECCeEEEEEEEeCCCc-------c
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS-FTTSFI--------TTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------E 75 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~ 75 (166)
....++|+|+|++|+|||||+++|++.. +...+. ++.+.......+..++..+.+.+||+||+ +
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 3556899999999999999999987643 322221 34343333334444666678999999998 5
Q ss_pred ccccccc-------cccccccEE-----------EEEEECCC-hhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031083 76 RFRTITT-------AYYRGAMGI-----------LLVYDVTD-ESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES 135 (166)
Q Consensus 76 ~~~~~~~-------~~~~~~d~~-----------i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~ 135 (166)
.+..++. .+++.++++ +++|++++ ..++..+. .++..+ ..++|+++|+||+|+..
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~- 188 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLT- 188 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCC-
Confidence 6666554 445443322 35555544 34454444 333333 35789999999999843
Q ss_pred Ccccch--HHHHHHHHHhCCeEEEEecccCCC
Q 031083 136 KRAVPT--AKGQELADEYGIKFFETVSMFNNE 165 (166)
Q Consensus 136 ~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (166)
...+.. +++.++++.+++++|++||++|.+
T Consensus 189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE 220 (361)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCSCCCC------
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc
Confidence 233322 567777888899999999998864
No 158
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.86 E-value=2.5e-21 Score=141.48 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=85.4
Q ss_pred EEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECC----------ChhhHHHHHHHHHHHHHh-cCCCCcE
Q 031083 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWMRNIDQH-AADNVNK 123 (166)
Q Consensus 55 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~pi 123 (166)
..+.+++ +.+.+||++|+++++.+|..++++++++|||||++ +.+++++...|+..+... ...++|+
T Consensus 154 ~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~pi 231 (340)
T 4fid_A 154 YDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVK 231 (340)
T ss_dssp EEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEE
T ss_pred EEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeE
Confidence 3444443 78999999999999999999999999999999999 788999999999888664 3468999
Q ss_pred EEEEeCCCCCCCC--------------cccchHHHHHHHH-Hh--------------------------CCeEEEEeccc
Q 031083 124 ILVGNKADMDESK--------------RAVPTAKGQELAD-EY--------------------------GIKFFETVSMF 162 (166)
Q Consensus 124 ivv~~K~Dl~~~~--------------~~~~~~~~~~~~~-~~--------------------------~~~~~~~Sa~~ 162 (166)
+|++||+|+.++. .....+++.++.. ++ ++.+++|||+.
T Consensus 232 iLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~d 311 (340)
T 4fid_A 232 LIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATD 311 (340)
T ss_dssp EEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTC
T ss_pred EEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeC
Confidence 9999999983211 1124566666543 33 36788999998
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
+.||
T Consensus 312 t~nv 315 (340)
T 4fid_A 312 GSNI 315 (340)
T ss_dssp HHHH
T ss_pred cHHH
Confidence 8764
No 159
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.85 E-value=2.5e-21 Score=144.30 Aligned_cols=76 Identities=18% Similarity=0.304 Sum_probs=67.3
Q ss_pred EEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCC----------hhhHHHHHHHHHHHHHh-cCCCCcEE
Q 031083 56 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWMRNIDQH-AADNVNKI 124 (166)
Q Consensus 56 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~pii 124 (166)
.+.+++ +.+.+||++|+++++.+|..++++++++|||||+++ .++++++..|+..+... ...++|++
T Consensus 211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii 288 (402)
T 1azs_C 211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 288 (402)
T ss_dssp EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence 344554 789999999999999999999999999999999999 88999999999998764 34689999
Q ss_pred EEEeCCCCC
Q 031083 125 LVGNKADMD 133 (166)
Q Consensus 125 vv~~K~Dl~ 133 (166)
||+||+|+.
T Consensus 289 LvgNK~DL~ 297 (402)
T 1azs_C 289 LFLNKQDLL 297 (402)
T ss_dssp EEEECHHHH
T ss_pred EEEEChhhh
Confidence 999999984
No 160
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.85 E-value=8.8e-21 Score=137.42 Aligned_cols=145 Identities=17% Similarity=0.098 Sum_probs=97.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCC-CccccceeEeEEEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTA 83 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~ 83 (166)
+..+|+++|++|+|||||+|++.+..+.. ...+..+.......+..++ .++.+|||||.. .+......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 44689999999999999999999876532 1222222222333344444 578999999986 23444567
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-eEEEEeccc
Q 031083 84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETVSMF 162 (166)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (166)
.++.+|++++|+|+++ +.....++..... ..+.|+++++||+|+.. ......+.+.++++.+++ .++++||++
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQ-EKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCC-CHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCc-cHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 7889999999999976 2222223322222 23689999999999843 122233455666666776 799999999
Q ss_pred CCCC
Q 031083 163 NNEW 166 (166)
Q Consensus 163 ~~~v 166 (166)
|.|+
T Consensus 159 g~~v 162 (301)
T 1ega_A 159 GLNV 162 (301)
T ss_dssp TTTH
T ss_pred CCCH
Confidence 9874
No 161
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.85 E-value=7.4e-22 Score=150.13 Aligned_cols=140 Identities=21% Similarity=0.195 Sum_probs=90.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAY 84 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 84 (166)
..++|+++|++|+|||||+|+|.+..+. ....++++.+.....+.+++ ..+.+|||+|...+...+ ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4578999999999999999999986432 33334444455555566777 568999999976544322 336
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCC
Q 031083 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNN 164 (166)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (166)
++.+|++++|+|.+++.+... ..|+..+. +.|+++|+||+|+..... .. +.+++. .+.+++++||++|+
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~-~~--~~~~~~--~~~~~i~iSAktg~ 369 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQL-IT--SLEYPE--NITQIVHTAAAQKQ 369 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGG-ST--TCCCCT--TCCCEEEEBTTTTB
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchh-hH--HHHHhc--cCCcEEEEECCCCC
Confidence 788999999999998766544 44555543 369999999999944322 11 111111 35789999999998
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
|+
T Consensus 370 Gi 371 (462)
T 3geh_A 370 GI 371 (462)
T ss_dssp SH
T ss_pred CH
Confidence 74
No 162
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.85 E-value=1.7e-20 Score=132.39 Aligned_cols=151 Identities=15% Similarity=0.078 Sum_probs=92.3
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCcccc--ceeEeEEEEEEECCeEEEEEEEeCCCc--------ccccc
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITT--IGIDFKIRTIELDGKRIKLQIWDTAGQ--------ERFRT 79 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~ 79 (166)
......++|+++|.+|+|||||+|++.+.........+ .+.......+..++ ..+.+|||||. +.+..
T Consensus 16 ~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~ 93 (247)
T 3lxw_A 16 FQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCE 93 (247)
T ss_dssp ----CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSH
T ss_pred ccCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHH
Confidence 33467899999999999999999999987765443332 22334445556665 56899999995 22222
Q ss_pred ccccc----cccccEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCccc-----chHHHHHHHH
Q 031083 80 ITTAY----YRGAMGILLVYDVTDESSF-NNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAV-----PTAKGQELAD 149 (166)
Q Consensus 80 ~~~~~----~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~-----~~~~~~~~~~ 149 (166)
..... .+.+|++++|+|+++.... ..+..++..+......+.|+++++||+|+.+..... ..++.+.+.+
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 94 ERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH
Confidence 22222 3889999999999852221 122233333321111267999999999994422111 1245688888
Q ss_pred HhCCeEEEEeccc
Q 031083 150 EYGIKFFETVSMF 162 (166)
Q Consensus 150 ~~~~~~~~~Sa~~ 162 (166)
.++..|+..++..
T Consensus 174 ~~g~~~~~~~~~~ 186 (247)
T 3lxw_A 174 ECGGRVCAFDNRA 186 (247)
T ss_dssp HTTTCEEECCTTC
T ss_pred HcCCeEEEEeCCC
Confidence 8888887666543
No 163
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.85 E-value=5.5e-23 Score=157.12 Aligned_cols=145 Identities=18% Similarity=0.221 Sum_probs=99.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 92 (166)
++..+|+++|..++|||||+++|.+..+.....+..+.+.....+.+++ ..+.||||||++.|..++...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4568999999999999999999987554433333333333222333344 46899999999999999999999999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcc-cchH--HHHHHHHHhC--CeEEEEecccCC
Q 031083 93 LVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTA--KGQELADEYG--IKFFETVSMFNN 164 (166)
Q Consensus 93 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~-~~~~--~~~~~~~~~~--~~~~~~Sa~~~~ 164 (166)
+|+|+++ +.+.+.+. .+. ..+.|+++++||+|+++.... +..+ +...++..++ ++++++||++|+
T Consensus 80 LVVda~~g~~~qT~e~l~----~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAIQ----HAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEEETTTBSCTTTHHHHH----HHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EEeecccCccHHHHHHHH----HHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 9999988 44444332 221 237899999999999543221 1100 0011222333 699999999999
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
|+
T Consensus 153 gI 154 (501)
T 1zo1_I 153 GI 154 (501)
T ss_dssp TC
T ss_pred Cc
Confidence 86
No 164
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.84 E-value=2.1e-21 Score=145.61 Aligned_cols=146 Identities=18% Similarity=0.162 Sum_probs=99.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcC-------CCCC---------CccccceeEeEEEEEEECCeEEEEEEEeCCCcccc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDD-------SFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 77 (166)
..+||+++|..++|||||+++|.+. .+.. +.....+++. ..+.++.....+.+||+||+++|
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~--~~~~~~~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA--AHVEYSTAARHYAHTDCPGHADY 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC--EEEEEECSSCEEEEEECSSHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe--eeEEeccCCeEEEEEECCChHHH
Confidence 4689999999999999999999863 1111 0111122222 22333333467899999999998
Q ss_pred ccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCc--ccchHHHHHHHHHhC--
Q 031083 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR--AVPTAKGQELADEYG-- 152 (166)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~~K~Dl~~~~~--~~~~~~~~~~~~~~~-- 152 (166)
.......+..+|++|+|+|+++....+. ..++..+.. .++| +++++||+|+.+... +...++++++++.++
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 155 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 8878888899999999999998543322 223333322 2677 789999999953211 122356777888776
Q ss_pred ---CeEEEEecccCCC
Q 031083 153 ---IKFFETVSMFNNE 165 (166)
Q Consensus 153 ---~~~~~~Sa~~~~~ 165 (166)
++++++||++|.|
T Consensus 156 ~~~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 156 GEETPIIVGSALCALE 171 (397)
T ss_dssp TTTSCEEECCHHHHHT
T ss_pred cccCcEEEeehhhccc
Confidence 5899999999764
No 165
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.84 E-value=1.3e-21 Score=152.87 Aligned_cols=150 Identities=18% Similarity=0.173 Sum_probs=81.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCCccccceeEeEEEEEEEC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS-------------------------------FTTSFITTIGIDFKIRTIELD 60 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (166)
....++|+++|.+++|||||+++|+... +..+..+.++++.....+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567899999999999999999996410 111112233333333333333
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChh---hH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 031083 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SF---NNIRNWMRNIDQHAADNVN-KILVGNKADMD 133 (166)
Q Consensus 61 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-iivv~~K~Dl~ 133 (166)
...+.|||+||++.|.......+..+|++|+|+|+++.. .+ ......+..+.. .+.| +++|+||+|+.
T Consensus 254 --~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 254 --KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGG
T ss_pred --CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccc
Confidence 367899999999999998888999999999999998532 11 011111122221 2455 99999999995
Q ss_pred CCCcc---cchHHHHHHH-HHhCC-----eEEEEecccCCCC
Q 031083 134 ESKRA---VPTAKGQELA-DEYGI-----KFFETVSMFNNEW 166 (166)
Q Consensus 134 ~~~~~---~~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~v 166 (166)
+.... ...+++..+. +..++ +++++||++|+||
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI 370 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNL 370 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSS
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccc
Confidence 42211 1223444555 44454 7999999999986
No 166
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.84 E-value=1.5e-21 Score=146.71 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=103.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC--------CCCCC---------ccccceeEeEEEEEEECCeEEEEEEEeCCCc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD--------SFTTS---------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 74 (166)
....++|+++|.+++|||||+++|.+. .+... .....+++.. ...++.....+.+||+||+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~--~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTA--HVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCE--EEEEECSSCEEEEEECCCS
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEee--eeEeccCCeEEEEEECCCh
Confidence 346799999999999999999999872 22111 0112222232 3333333467899999999
Q ss_pred cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCc--ccchHHHHHHHHHh
Q 031083 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR--AVPTAKGQELADEY 151 (166)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~~K~Dl~~~~~--~~~~~~~~~~~~~~ 151 (166)
++|.......+..+|++|+|+|+++... .....++..+.. .+.| +++++||+|+.++.. +...++++++++.+
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY 161 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence 9998888888899999999999998644 344555555443 2567 899999999953211 11234567777777
Q ss_pred C-----CeEEEEecccCCC
Q 031083 152 G-----IKFFETVSMFNNE 165 (166)
Q Consensus 152 ~-----~~~~~~Sa~~~~~ 165 (166)
+ ++++++||++|.|
T Consensus 162 ~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 162 EFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp TSCTTTSCEEECCHHHHHH
T ss_pred cccccCCCEEEccHHHhhh
Confidence 6 6899999999865
No 167
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.84 E-value=1.1e-19 Score=129.38 Aligned_cols=118 Identities=18% Similarity=0.232 Sum_probs=84.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccc-----
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR----- 86 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~----- 86 (166)
...++|+++|.+|+|||||+++|.+..+. ....+..+.......+..++ ..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 46799999999999999999999987752 22223333445555666666 47999999999877655444443
Q ss_pred ----cccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCC--CcEEEEEeCCCCC
Q 031083 87 ----GAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADN--VNKILVGNKADMD 133 (166)
Q Consensus 87 ----~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~piivv~~K~Dl~ 133 (166)
.+|++++|++++... +... ..|+..+......+ .|+++|+||+|+.
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 789999999988754 3333 46666666554433 3899999999984
No 168
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.84 E-value=9.8e-21 Score=146.08 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=83.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCC-----------------CC-----CccccceeEeEEEEEEECCeEEEEEEEe
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-----------------TT-----SFITTIGIDFKIRTIELDGKRIKLQIWD 70 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~-----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~D 70 (166)
....+|+++|.+++|||||+++|..... .. +.....++......+.+++ +.+.+||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 4578999999999999999999962100 00 0011122223334455555 6799999
Q ss_pred CCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031083 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (166)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~ 134 (166)
|||+..|...+..+++.+|++|+|+|+++..+......| ..+.. .++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 999999999899999999999999999987666554433 33322 3789999999999943
No 169
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.83 E-value=6.4e-22 Score=150.04 Aligned_cols=139 Identities=15% Similarity=0.157 Sum_probs=87.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCC-CccccceeEeEEEEEEECCeEEEEEEEeCCCcc--------ccccccccccc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYYR 86 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~ 86 (166)
.+|+++|.+|+|||||+|+|.+..+.. ...+..+.+.....+.+++ ..+.+|||+|++ .+...+..+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 689999999999999999999876532 2233333344444445554 468999999975 45555677888
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-eEEEEecccCCC
Q 031083 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETVSMFNNE 165 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 165 (166)
.+|++++|+|++++.+... .++..+.+ ..+.|+++|+||+|+...... +.++. .+++ .++++||++|.|
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~-----~~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRAN-----IYDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----C-----CCSSG-GGSSCCCEECBTTTTBT
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhh-----HHHHH-HcCCCCeEEEeCcCCCC
Confidence 9999999999998666443 23333322 247899999999998433211 12222 4565 789999999987
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
+
T Consensus 152 v 152 (436)
T 2hjg_A 152 L 152 (436)
T ss_dssp H
T ss_pred h
Confidence 4
No 170
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.83 E-value=5.2e-20 Score=139.69 Aligned_cols=147 Identities=19% Similarity=0.129 Sum_probs=93.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccc----------
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT---------- 81 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---------- 81 (166)
+..++|+++|++|+|||||+|++.+.... ....+..+.+.....+.+++. .+.+||++|..+.....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 45689999999999999999999987642 222333444555566777875 57899999974332211
Q ss_pred --ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHH-HHHHH----hCCe
Q 031083 82 --TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ-ELADE----YGIK 154 (166)
Q Consensus 82 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~-~~~~~----~~~~ 154 (166)
...++.+|++++++|+++..+.... .+...+.. .+.|+++|+||.|+.+.. ....++.. .+.+. .+++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHR-EKRYDEFTKLFREKLYFIDYSP 330 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTG-GGCHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCch-hhHHHHHHHHHHHHhccCCCCc
Confidence 2356679999999999986655432 22222222 367999999999994432 22233332 22232 3579
Q ss_pred EEEEecccCCCC
Q 031083 155 FFETVSMFNNEW 166 (166)
Q Consensus 155 ~~~~Sa~~~~~v 166 (166)
++++||++|.||
T Consensus 331 ~~~~SA~~g~gv 342 (439)
T 1mky_A 331 LIFTSADKGWNI 342 (439)
T ss_dssp EEECBTTTTBSH
T ss_pred EEEEECCCCCCH
Confidence 999999999875
No 171
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.82 E-value=5e-20 Score=143.78 Aligned_cols=112 Identities=18% Similarity=0.185 Sum_probs=79.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCC----ccccceeEeEEEEEEE---------C-----CeEEEEEEEeCCCcc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTS----FITTIGIDFKIRTIEL---------D-----GKRIKLQIWDTAGQE 75 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~~~~~~~~~~~~~~~---------~-----~~~~~~~i~D~~g~~ 75 (166)
+.++|+++|.+++|||||+++|.+..+... ..++.+..+. .+.. . .....+.||||||++
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~--~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEI--PMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEE--EHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEE--eechhhhhccccccccccccccCCEEEEECCCcH
Confidence 457999999999999999999987543221 1122221111 1100 0 011258999999999
Q ss_pred ccccccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031083 76 RFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (166)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~ 134 (166)
.|..++...++.+|++|+|+|+++ +.+++.+.. +.. .++|+++++||+|+..
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIH 136 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGST
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEeccccccc
Confidence 999999999999999999999999 667655442 211 3789999999999953
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.80 E-value=8.4e-20 Score=149.31 Aligned_cols=150 Identities=18% Similarity=0.137 Sum_probs=100.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCC-------CCC-------CccccceeEeEEEEEEECCeEEEEEEEeCCCccc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDS-------FTT-------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 76 (166)
.....++|+++|..++|||||+++|.+.. +.. ....+.++++....+.++.....+.+||+||+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34567999999999999999999998631 100 0001112222212233333446789999999999
Q ss_pred cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCc--ccchHHHHHHHHHhC-
Q 031083 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR--AVPTAKGQELADEYG- 152 (166)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~~K~Dl~~~~~--~~~~~~~~~~~~~~~- 152 (166)
|.......+..+|++|+|+|+++.... ....++..+... ++| +++++||+|+.+... +...+++.++++..+
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 988888889999999999999985332 233344443332 567 799999999954211 112356777888776
Q ss_pred ----CeEEEEecccCC
Q 031083 153 ----IKFFETVSMFNN 164 (166)
Q Consensus 153 ----~~~~~~Sa~~~~ 164 (166)
++++++||++|.
T Consensus 448 ~~~~vp~IpvSAktG~ 463 (1289)
T 3avx_A 448 PGDDTPIVRGSALKAL 463 (1289)
T ss_dssp CTTTCCEEECCSTTTT
T ss_pred cccceeEEEEEeccCC
Confidence 589999999983
No 173
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.80 E-value=1.6e-18 Score=123.71 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=80.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCC-CccccceeEeEEEEEEECCeEEEEEEEeCCCcccccccccc--------
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA-------- 83 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-------- 83 (166)
...++|+++|.+|+|||||+|+|++..+.. ...+..+.......+..++ ..+.+|||||+..+......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 457999999999999999999999877532 2122222223333344444 67999999998765433221
Q ss_pred -ccccccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 031083 84 -YYRGAMGILLVYDVTDESSFNN-IRNWMRNIDQHAADN--VNKILVGNKADMDE 134 (166)
Q Consensus 84 -~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~piivv~~K~Dl~~ 134 (166)
....+|++++|+|++.. ++.. ...|+..+......+ .|+++|+||+|+..
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 13479999999998763 3333 246666665544333 69999999999843
No 174
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.80 E-value=5.1e-20 Score=136.68 Aligned_cols=134 Identities=10% Similarity=0.029 Sum_probs=94.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 96 (166)
+|+++|.+++|||||+++|. ....+++.....+..++ ..+.+||+||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 12222233333444444 569999999999987777777899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCCCCc-ccchHHHHHHHHHhC---CeEEE--Eeccc---CCC
Q 031083 97 VTDESSFNNIRNWMRNIDQHAADNVNK-ILVGN-KADMDESKR-AVPTAKGQELADEYG---IKFFE--TVSMF---NNE 165 (166)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~pi-ivv~~-K~Dl~~~~~-~~~~~~~~~~~~~~~---~~~~~--~Sa~~---~~~ 165 (166)
++ ..+...+.++..+... +.|. ++++| |+|+ +... ....++++++.+..+ +++++ +||++ |+|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 43 3444555555554432 4666 88999 9998 3211 112245666666554 69999 99999 877
Q ss_pred C
Q 031083 166 W 166 (166)
Q Consensus 166 v 166 (166)
+
T Consensus 167 i 167 (370)
T 2elf_A 167 V 167 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 175
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.79 E-value=4.3e-19 Score=132.76 Aligned_cols=85 Identities=20% Similarity=0.212 Sum_probs=48.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEE---------------------ECC-eEEEEEEEeCCC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIE---------------------LDG-KRIKLQIWDTAG 73 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~g 73 (166)
++|+++|.+++|||||+|++++........+.++.+....... +++ ..+++.+||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998764333333333333222211 222 247899999999
Q ss_pred ccc----ccccc---ccccccccEEEEEEECCCh
Q 031083 74 QER----FRTIT---TAYYRGAMGILLVYDVTDE 100 (166)
Q Consensus 74 ~~~----~~~~~---~~~~~~~d~~i~v~d~~~~ 100 (166)
... ...+. ...++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 22222 2456899999999999875
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.78 E-value=2.4e-19 Score=123.21 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=89.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc----------cccc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTI 80 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~ 80 (166)
+.....+|+++|++|+|||||++++.+..+.....++.+.......+.+++ .+.+||+||... +...
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHH
Confidence 345568999999999999999999998765443344444333333334433 478899999642 2222
Q ss_pred ccccc---ccccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-cccchHHHHHHHHHhC--
Q 031083 81 TTAYY---RGAMGILLVYDVTDESSFNN--IRNWMRNIDQHAADNVNKILVGNKADMDESK-RAVPTAKGQELADEYG-- 152 (166)
Q Consensus 81 ~~~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~-~~~~~~~~~~~~~~~~-- 152 (166)
...++ ..++++++++|++++.+... +..|+. ..+.|+++++||+|+.... .+...+.+..++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~------~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~ 172 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV------DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD 172 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH------HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH------HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC
Confidence 22233 46899999999998655432 222322 1368999999999984321 1222345566666654
Q ss_pred CeEEEEecccCCCC
Q 031083 153 IKFFETVSMFNNEW 166 (166)
Q Consensus 153 ~~~~~~Sa~~~~~v 166 (166)
+.++++||+++.++
T Consensus 173 ~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 173 VQVETFSSLKKQGV 186 (210)
T ss_dssp EEEEECBTTTTBSH
T ss_pred CceEEEeecCCCCH
Confidence 57889999998863
No 177
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.77 E-value=2.4e-19 Score=129.56 Aligned_cols=150 Identities=13% Similarity=0.110 Sum_probs=90.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCC------ccccc----------------------eeE------------
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS------FITTI----------------------GID------------ 51 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~------~~~~~----------------------~~~------------ 51 (166)
....++|+|+|.+++|||||+|+|.+..+.+. ..++. +.+
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 45568999999999999999999999877422 11210 000
Q ss_pred -----------eEEEEEEECCeEEEEEEEeCCCcc-------------ccccccccccccccEEE-EEEECCChhhHHHH
Q 031083 52 -----------FKIRTIELDGKRIKLQIWDTAGQE-------------RFRTITTAYYRGAMGIL-LVYDVTDESSFNNI 106 (166)
Q Consensus 52 -----------~~~~~~~~~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~ 106 (166)
.....+...+ ...+.+|||||.. .+..+...+++.++.++ +|+|+++..+....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred hcccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 0000011110 2578999999953 23345566777777666 79999875443333
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHH--hC-CeEEEEecccCCCC
Q 031083 107 RNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE--YG-IKFFETVSMFNNEW 166 (166)
Q Consensus 107 ~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~v 166 (166)
..++..+. ..+.|+++|+||+|+.+.... ..+.++..... .+ .+++++||++|+|+
T Consensus 182 ~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi 240 (299)
T 2aka_B 182 LKIAKEVD---PQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGK 240 (299)
T ss_dssp HHHHHHHC---TTCSSEEEEEECGGGSCTTCC-CHHHHTTCSSCCTTCEEECCCCCCBCTTSC
T ss_pred HHHHHHhC---CCCCeEEEEEEccccCCCCch-HHHHHhCCcCcCCCCcEEEECCChhhcccc
Confidence 33444443 346899999999999543221 12221110001 12 36789999999885
No 178
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=4e-20 Score=140.90 Aligned_cols=140 Identities=15% Similarity=0.145 Sum_probs=87.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCC--------cccccccccccc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG--------QERFRTITTAYY 85 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~~ 85 (166)
..+|+++|.+|+|||||+|+|.+..+. ....+..+.+.....+...+ ..+.+||||| ++++......++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 579999999999999999999986653 12223223233333333333 5799999999 666666777888
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC-eEEEEecccCC
Q 031083 86 RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETVSMFNN 164 (166)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (166)
+.+|++|+|+|..+..+. ...++..+.+. .+.|+++|+||+|+..... +..++. ..++ ..+++||++|.
T Consensus 101 ~~ad~il~VvD~~~~~~~--~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~-----~~~e~~-~lg~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTA--ADEEVAKILYR--TKKPVVLAVNKLDNTEMRA-----NIYDFY-SLGFGEPYPISGTHGL 170 (456)
T ss_dssp HHCSEEEEEEESSSCSCH--HHHHHHHHHTT--CCSCEEEEEECC--------------CCSG-GGSSSSEEECCTTTCT
T ss_pred hhCCEEEEEEeCCCCCCh--HHHHHHHHHHH--cCCCEEEEEECccchhhhh-----hHHHHH-HcCCCceEEeeccccc
Confidence 999999999998864332 22333333322 4789999999999843211 111111 2333 56799999998
Q ss_pred CC
Q 031083 165 EW 166 (166)
Q Consensus 165 ~v 166 (166)
|+
T Consensus 171 gv 172 (456)
T 4dcu_A 171 GL 172 (456)
T ss_dssp TH
T ss_pred ch
Confidence 74
No 179
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.77 E-value=7.3e-20 Score=132.58 Aligned_cols=125 Identities=18% Similarity=0.153 Sum_probs=101.6
Q ss_pred HHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChh-hHHHHH
Q 031083 30 CLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-SFNNIR 107 (166)
Q Consensus 30 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 107 (166)
+|+.++..+.|. ..+.+|.+..+. ..+..++ .+.+||+ +++++.++..+++++|++|+|||+++++ +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888888 888899985444 3332232 6899999 8999999999999999999999999988 688888
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhC--CeEEEEecccCCCC
Q 031083 108 NWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFFETVSMFNNEW 166 (166)
Q Consensus 108 ~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v 166 (166)
.|+..+.. .+.|+++|+||+|+.+. .. .++++++++.++ ++++++||++|.||
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~-~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv 160 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDE-DD--LRKVRELEEIYSGLYPIVKTSAKTGMGI 160 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCH-HH--HHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCc-hh--HHHHHHHHHHHhhhCcEEEEECCCCcCH
Confidence 89887654 37899999999999432 22 256788888888 89999999999885
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.76 E-value=6.9e-18 Score=130.35 Aligned_cols=145 Identities=16% Similarity=0.090 Sum_probs=94.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCC------------c--------ccccee--EeEEEEEEECCeEEEEEEEe
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS------------F--------ITTIGI--DFKIRTIELDGKRIKLQIWD 70 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~------------~--------~~~~~~--~~~~~~~~~~~~~~~~~i~D 70 (166)
....+|+++|.+++|||||+++|........ . ....++ ......+.+++ +.+.+||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 4579999999999999999999986311000 0 001111 11122344444 6799999
Q ss_pred CCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHH
Q 031083 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE 150 (166)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~ 150 (166)
+||+..|......+++.+|++|+|+|+++.... ....++.... ..++|+++++||+|+..... .+...++...
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~~---~~~ipiivviNK~Dl~~~~~---~~~~~~i~~~ 161 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVTR---LRDTPILTFMNKLDRDIRDP---MELLDEVENE 161 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHHT---TTTCCEEEEEECTTSCCSCH---HHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHHH---HcCCCEEEEEcCcCCccccH---HHHHHHHHHH
Confidence 999999988888889999999999999985432 2233333332 23789999999999944322 2345666777
Q ss_pred hCCeE-----EEEecccCCCC
Q 031083 151 YGIKF-----FETVSMFNNEW 166 (166)
Q Consensus 151 ~~~~~-----~~~Sa~~~~~v 166 (166)
++... ..+|++++.||
T Consensus 162 l~~~~~~~~~pi~sa~~~~Gv 182 (529)
T 2h5e_A 162 LKIGCAPITWPIGCGKLFKGV 182 (529)
T ss_dssp HCCEEEESEEEESCGGGCCEE
T ss_pred hCCCccceecceecccCccee
Confidence 77543 33577776653
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=2.7e-19 Score=132.58 Aligned_cols=148 Identities=12% Similarity=0.113 Sum_probs=95.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCcccccee---EeE-------------------------------------
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGI---DFK------------------------------------- 53 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~---~~~------------------------------------- 53 (166)
...+|+|+|++|+|||||+++|.+..+.+......+. ...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 4559999999999999999999998774333222110 000
Q ss_pred --------------EEEEEECCeEEEEEEEeCCCcccc-------------ccccccccccccEEEEEEECCChhhHHHH
Q 031083 54 --------------IRTIELDGKRIKLQIWDTAGQERF-------------RTITTAYYRGAMGILLVYDVTDESSFNNI 106 (166)
Q Consensus 54 --------------~~~~~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 106 (166)
...+... ....+++||+||..++ ..+...+++++|++|++++..+.+...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEET-TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred HhcCCCCCcccceEEEEEeCC-CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence 0001111 1135899999997665 445567888999999999876543321
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCC
Q 031083 107 RNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNE 165 (166)
Q Consensus 107 ~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (166)
..|+..+......+.|+++|+||+|+.... ....+.++.+...++.+|+++|+.++++
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~v~~~s~~~ 247 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDKG-TDAVEILEGRSFKLKYPWVGVVNRSQAD 247 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCTT-CCSHHHHTTSSSCCSSCCEEECCCCHHH
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCCc-ccHHHHHcCccccccCCeEEEEECChHH
Confidence 223333333344567999999999985432 2333444445556678999999988654
No 182
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.75 E-value=3e-18 Score=128.65 Aligned_cols=146 Identities=12% Similarity=0.159 Sum_probs=98.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc----cccccccc---cccc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YRGA 88 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~ 88 (166)
-.|+++|++|+|||||++.+.+........+..+.......+..++ ...+.+||+||... +..+...+ +..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 3578999999999999999998643222222222333444455543 24688999999642 22222222 3468
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
+.+++++|++ .+.+..+..+.+++..... .+.|.++|+||+|+... ...+++.+..+..+++++.+||++++++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~~g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAREGLAVLPVSALTGAGL 312 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHhcCCeEEEEECCCccCH
Confidence 9999999998 6677777777776654321 25689999999998432 2334555666666889999999999874
No 183
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=5.6e-18 Score=127.21 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=83.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCc--------cccceeEeEEEEEEECCeEEEEEEEeCCCccccc-----
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----- 78 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----- 78 (166)
....++|+|+|++|+|||||++.|.+..+.... .++.........+...+....+++||++|...+.
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 456688999999999999999999987653211 1122211111111223333578999999965431
Q ss_pred --c------------------ccccccccccEEEEEEECCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031083 79 --T------------------ITTAYYRGAMGILLVYDVTDE-SSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK 136 (166)
Q Consensus 79 --~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~piivv~~K~Dl~~~~ 136 (166)
. +...++.++++.+++|..... .++.... .|+..+. .+.|+++|+||+|+.. .
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~-~ 182 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLT-P 182 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSC-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCcc-H
Confidence 1 123345555555555555442 3444433 4555553 3789999999999833 2
Q ss_pred cccch--HHHHHHHHHhCCeEEEEecccCCCC
Q 031083 137 RAVPT--AKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 137 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
.++.. +++.+.+..+++++|++|+++++++
T Consensus 183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v 214 (418)
T 2qag_C 183 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEE 214 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCC-------
T ss_pred HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCH
Confidence 33332 6778888899999999999998774
No 184
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.75 E-value=1.9e-19 Score=130.35 Aligned_cols=150 Identities=21% Similarity=0.273 Sum_probs=76.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC-CCCCCc--------cccceeEeEEEEEEECCeEEEEEEEeCCCc-------c
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD-SFTTSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------E 75 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~ 75 (166)
....++|+++|++|+|||||++++.+. .++..+ .++.........+..++....+++||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 456789999999999999999998875 443322 111111111112222344568999999997 4
Q ss_pred ccccccc-------cccccc-------------cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031083 76 RFRTITT-------AYYRGA-------------MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135 (166)
Q Consensus 76 ~~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~ 135 (166)
.+..+.. .+++.. ++++++.+.+. .+++.+.. ..+... ..+.++++|+||.|+...
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l-~~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI-HNKVNIVPVIAKADTLTL 170 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH-TTTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH-HhcCCEEEEEEeCCCCCH
Confidence 4444433 333322 33444433221 12333321 222222 236799999999998432
Q ss_pred C-cccchHHHHHHHHHhCCeEEEEecccCCCC
Q 031083 136 K-RAVPTAKGQELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 136 ~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
. .....++++++++.+++++|++||++| ||
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v 201 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIYHLPDAES-DE 201 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC-------
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCccc-cc
Confidence 1 123456788999999999999999998 65
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.74 E-value=6.4e-18 Score=133.83 Aligned_cols=116 Identities=13% Similarity=0.172 Sum_probs=82.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCC-------------Cc-----cccceeEeEEEEEEECCeEEEEEEEeCCC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-------------SF-----ITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 73 (166)
.+...+|+++|+.++|||||+++|.+..... .+ ....++......+...+ +.+.+||+||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG 83 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPG 83 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCC
Confidence 3567899999999999999999998432210 00 01122223333444443 6799999999
Q ss_pred ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031083 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (166)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~ 133 (166)
+..|.......++.+|++++|+|+++..... ...++..+.. .+.|+++++||+|+.
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH---ccCCEEEEecCCchh
Confidence 9999888888999999999999988754432 2344444433 368999999999984
No 186
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.74 E-value=2.9e-17 Score=121.00 Aligned_cols=147 Identities=14% Similarity=0.126 Sum_probs=95.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeE---------------EEEEEEeCCCccccc-
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR- 78 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~~- 78 (166)
.++|+++|.+++|||||+|+|.+..+.....+..+++.....+.+++.. ..+.+||+||...+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 3689999999999999999999877544334433333433345555432 479999999987543
Q ss_pred ---cccc---cccccccEEEEEEECCCh----------hhHHHHHHHHHHH-----------------------------
Q 031083 79 ---TITT---AYYRGAMGILLVYDVTDE----------SSFNNIRNWMRNI----------------------------- 113 (166)
Q Consensus 79 ---~~~~---~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~----------------------------- 113 (166)
.+.. ..++.+|++++|+|+++. +.++.+..+..++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 2322 346899999999999862 2333322111111
Q ss_pred -----------H-------------------Hh-cCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEeccc
Q 031083 114 -----------D-------------------QH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMF 162 (166)
Q Consensus 114 -----------~-------------------~~-~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (166)
. .. .....|+++++|+.|... ........++++++..+++++.+||+.
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~-~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF-ENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS-SSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc-cccHHHHHHHHHHHHcCCCEEEechHH
Confidence 0 00 123489999999999622 223446678888888899999999875
No 187
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.72 E-value=3.1e-17 Score=130.39 Aligned_cols=140 Identities=17% Similarity=0.142 Sum_probs=93.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc--CCCCC-----------Cc-----cccceeEeEEEEEEECCeEEEEEEEeCCC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSD--DSFTT-----------SF-----ITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~--~~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 73 (166)
.+...+|+++|.+++|||||+++|.. +.+.. .+ .+..++......+.+++ +.+.+|||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence 46679999999999999999999984 22210 00 01112222233445554 6799999999
Q ss_pred ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCC
Q 031083 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI 153 (166)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (166)
+..+...+...++.+|++|+|+|+++..+......|. .+.. .+.|+++|+||+|+..... .+-.+++...++.
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~~~~---~~~~~~l~~~l~~ 157 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLGANF---EYSVSTLHDRLQA 157 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTTCCH---HHHHHHHHHHHCC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccccch---HHHHHHHHHHhCC
Confidence 9999888888999999999999999877765554443 3332 2789999999999954321 2223444444553
Q ss_pred ----eEEEEec
Q 031083 154 ----KFFETVS 160 (166)
Q Consensus 154 ----~~~~~Sa 160 (166)
..+.+|+
T Consensus 158 ~~~~~~ipisa 168 (693)
T 2xex_A 158 NAAPIQLPIGA 168 (693)
T ss_dssp CEEESEEEECC
T ss_pred CceeEEeeccc
Confidence 2455665
No 188
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.71 E-value=5.6e-17 Score=128.91 Aligned_cols=120 Identities=19% Similarity=0.201 Sum_probs=85.2
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHhcC--CCC------C----------CccccceeEeEEEEEEECCeEEEEEEEeC
Q 031083 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDD--SFT------T----------SFITTIGIDFKIRTIELDGKRIKLQIWDT 71 (166)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~--~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 71 (166)
...+...+|+++|.+++|||||+++|... .+. . +.....++......+.+++ +.+.+|||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDT 84 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDT 84 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECC
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEEC
Confidence 34567899999999999999999999841 110 0 0011112222333444554 67999999
Q ss_pred CCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031083 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135 (166)
Q Consensus 72 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~ 135 (166)
||+..|...+...++.+|++|+|+|+++..+......|.. +.. .+.|+++|+||+|+...
T Consensus 85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCcccC
Confidence 9999998888899999999999999999777766555543 322 27899999999999543
No 189
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.71 E-value=4e-17 Score=129.83 Aligned_cols=119 Identities=17% Similarity=0.239 Sum_probs=80.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCC-Ccccccee--Ee-------------------------------------
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGI--DF------------------------------------- 52 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~--~~------------------------------------- 52 (166)
...++|+|+|.+++|||||+|+|.+....+ ...+++.. .+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 346899999999999999999999876533 22333210 00
Q ss_pred --------------EEEEEEECCeE--EEEEEEeCCCccc---cccccccccccccEEEEEEECCChhhHHHHHHHHHHH
Q 031083 53 --------------KIRTIELDGKR--IKLQIWDTAGQER---FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI 113 (166)
Q Consensus 53 --------------~~~~~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 113 (166)
....+.++... ..+.+|||||... .......+++.+|++++|+|++++.+......|.+.+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 00111111110 2489999999543 3345567888999999999999887776665555444
Q ss_pred HHhcCCCCcEEEEEeCCCCCC
Q 031083 114 DQHAADNVNKILVGNKADMDE 134 (166)
Q Consensus 114 ~~~~~~~~piivv~~K~Dl~~ 134 (166)
.. .+.|+++|+||+|+..
T Consensus 227 ~~---~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TT---SCCCEEEEEECGGGGG
T ss_pred Hh---hCCCEEEEEECccccc
Confidence 32 2568999999999843
No 190
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.70 E-value=2.6e-17 Score=133.20 Aligned_cols=120 Identities=20% Similarity=0.209 Sum_probs=86.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCC--CC--------------CCccccceeEe--EEEEEE------------ECC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS--FT--------------TSFITTIGIDF--KIRTIE------------LDG 61 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~--~~--------------~~~~~~~~~~~--~~~~~~------------~~~ 61 (166)
.+...||+|+|..++|||||+++|+... .. .+.....++.. ....+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999998631 10 00111111111 112222 234
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031083 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135 (166)
Q Consensus 62 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~ 135 (166)
..+.+.+|||||+.+|...+..+++.+|++|+|+|+++..+++....|.+... .+.|+++|+||+|+...
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~~~ 165 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRALL 165 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcchh
Confidence 47889999999999999999999999999999999999877776655554332 37899999999998533
No 191
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.70 E-value=9.3e-18 Score=122.10 Aligned_cols=147 Identities=14% Similarity=0.164 Sum_probs=84.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCcccccee-----EeEE--------------------------------
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGI-----DFKI-------------------------------- 54 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~-----~~~~-------------------------------- 54 (166)
.....+|+|+|.+++|||||+|+|.+..+.+......+. ....
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 345679999999999999999999998763221100000 0000
Q ss_pred ----------------------EEEEECCeEEEEEEEeCCCccc-------------cccccccccccccEEEEEEECCC
Q 031083 55 ----------------------RTIELDGKRIKLQIWDTAGQER-------------FRTITTAYYRGAMGILLVYDVTD 99 (166)
Q Consensus 55 ----------------------~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~ 99 (166)
..+... ....+.+|||||... +......+++.+|++++|+|.++
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSP-HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEET-TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecC-CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 000111 114689999999643 33445667889999999999754
Q ss_pred hhhH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEecccC
Q 031083 100 ESSF-NNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMFN 163 (166)
Q Consensus 100 ~~s~-~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (166)
.... .....++..+. ..+.|+++|+||+|+...... ..+.++.....++..++++|+.++
T Consensus 180 ~~~~~~~~~~i~~~~~---~~~~~~i~v~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v~~~sa 240 (315)
T 1jwy_B 180 TDLANSDALQLAKEVD---PEGKRTIGVITKLDLMDKGTD-AMEVLTGRVIPLTLGFIGVINRSQ 240 (315)
T ss_dssp SCSTTCSHHHHHHHHC---SSCSSEEEEEECTTSSCSSCC-CHHHHTTSSSCCTTCEEECCCCCH
T ss_pred cchhhhHHHHHHHHhC---CCCCcEEEEEcCcccCCcchH-HHHHHhCCCccCCCCeEEEecCCh
Confidence 3211 11112223332 247899999999999543321 122222111122367888777654
No 192
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.70 E-value=2.2e-16 Score=125.65 Aligned_cols=122 Identities=18% Similarity=0.120 Sum_probs=84.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhcC--CCCCC-----------c-----cccceeEeEEEEEEEC-----CeEEEEE
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDD--SFTTS-----------F-----ITTIGIDFKIRTIELD-----GKRIKLQ 67 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~--~~~~~-----------~-----~~~~~~~~~~~~~~~~-----~~~~~~~ 67 (166)
..+...+|+++|..++|||||+++|... .+... + ....++......+.++ +..+.+.
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 3466799999999999999999999742 11110 0 1111222222233333 2347899
Q ss_pred EEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 031083 68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136 (166)
Q Consensus 68 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~ 136 (166)
+|||||+..|...+...++.+|++|+|+|+++.........| .... ..++|+++|+||+|+....
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~---~~~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQAN---KYKVPRIAFVNKMDRMGAN 150 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHH---HcCCCEEEEEeCCCccccc
Confidence 999999999988888899999999999999986655444333 3332 2378999999999985443
No 193
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.66 E-value=2e-16 Score=117.07 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=92.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECC-------------------eEEEEEEEeCCCccc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG-------------------KRIKLQIWDTAGQER 76 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~ 76 (166)
++|+++|.+|+|||||++++.+........+..+++.......+++ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999997643222222222222223333322 125799999999765
Q ss_pred cc----cc---cccccccccEEEEEEECCCh----------hhHHHHHHHHHHH--------------------------
Q 031083 77 FR----TI---TTAYYRGAMGILLVYDVTDE----------SSFNNIRNWMRNI-------------------------- 113 (166)
Q Consensus 77 ~~----~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~-------------------------- 113 (166)
.. .+ ....++.+|++++|+|+++. +.++.+..+..++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 42 12 22346899999999999862 1222111100000
Q ss_pred ---------HHh------------------------cCCCCcEEEEEeCCCC--CCCCcccchHHHHHHHHHhCCeEEEE
Q 031083 114 ---------DQH------------------------AADNVNKILVGNKADM--DESKRAVPTAKGQELADEYGIKFFET 158 (166)
Q Consensus 114 ---------~~~------------------------~~~~~piivv~~K~Dl--~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (166)
... .....|+++++||.|. .+.........++++++..+++++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 000 0123699999999984 11111345677888999999999999
Q ss_pred ecccCC
Q 031083 159 VSMFNN 164 (166)
Q Consensus 159 Sa~~~~ 164 (166)
||++..
T Consensus 242 SAk~E~ 247 (368)
T 2dby_A 242 SARLEA 247 (368)
T ss_dssp CHHHHH
T ss_pred echhHH
Confidence 998754
No 194
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.65 E-value=2.2e-16 Score=122.53 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=79.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCC---CCccccceeEeEEEE--------------------------------
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT---TSFITTIGIDFKIRT-------------------------------- 56 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~~-------------------------------- 56 (166)
.....+|+|+|.+|+|||||+|+|++..+. ....+++........
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 356789999999999999999999998763 222332211000000
Q ss_pred ----EEECCeE-EEEEEEeCCCccc-----------cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCC
Q 031083 57 ----IELDGKR-IKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120 (166)
Q Consensus 57 ----~~~~~~~-~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 120 (166)
+.+++.. .++.||||||... +......++..+|++++|+|+++....+....++..+.. .+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HE 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cC
Confidence 0000000 2588999999754 334455677889999999999886555556666665543 25
Q ss_pred CcEEEEEeCCCCC
Q 031083 121 VNKILVGNKADMD 133 (166)
Q Consensus 121 ~piivv~~K~Dl~ 133 (166)
.|+++|+||+|+.
T Consensus 219 ~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 219 DKIRVVLNKADMV 231 (550)
T ss_dssp GGEEEEEECGGGS
T ss_pred CCEEEEEECCCcc
Confidence 7899999999984
No 195
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.63 E-value=1.1e-17 Score=123.69 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=82.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCc------cccce----------------------eE-------------
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSF------ITTIG----------------------ID------------- 51 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~------~~~~~----------------------~~------------- 51 (166)
....+|+|+|.+++|||||+|+|.+..+.+.. .|+.. .+
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 44579999999999999999999998764221 12200 00
Q ss_pred ----------eEEEEEEECCeEEEEEEEeCCCcc-------------cccccccccccccc-EEEEEEECCChhhHHHHH
Q 031083 52 ----------FKIRTIELDGKRIKLQIWDTAGQE-------------RFRTITTAYYRGAM-GILLVYDVTDESSFNNIR 107 (166)
Q Consensus 52 ----------~~~~~~~~~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 107 (166)
.....+... ....+++|||||.. .+..+...++...+ +++++.+++..-.-....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~-~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~ 187 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187 (353)
T ss_dssp HTTTTCCCCCCEEEEEEET-TCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred cccCCCcccCceEEEEecC-CCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence 000011111 12469999999953 22334455565554 555566665422211222
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHH--HHHHhC-CeEEEEecccCCCC
Q 031083 108 NWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQE--LADEYG-IKFFETVSMFNNEW 166 (166)
Q Consensus 108 ~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~v 166 (166)
.++..+ ...+.|+++|+||+|+.+..... .+.++. +....+ .+++.+||++|+|+
T Consensus 188 ~i~~~~---~~~~~~~i~V~NK~Dl~~~~~~~-~~~~~~~~~~l~~~~~~v~~~SA~~~~~i 245 (353)
T 2x2e_A 188 KVAKEV---DPQGQRTIGVITKLDLMDEGTDA-RDVLENKLLPLRRGYIGVVNRSQKDIDGK 245 (353)
T ss_dssp HHHHHH---CTTCTTEEEEEECGGGSCTTCCC-HHHHTTCSSCCTTCEEECCCCCHHHHHTT
T ss_pred HHHHHh---CcCCCceEEEeccccccCcchhH-HHHHhCCcccccCCceEEEeCCccccccc
Confidence 233333 34578999999999995432211 111110 111123 25678999998764
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.58 E-value=7.5e-16 Score=106.55 Aligned_cols=141 Identities=17% Similarity=0.130 Sum_probs=82.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEe--------------EEEEEEEC----------------CeE
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDF--------------KIRTIELD----------------GKR 63 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~ 63 (166)
...+|+++|.+|+|||||+++|...............++ ....+... ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457999999999999999999986422111111100000 00111110 012
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHH
Q 031083 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAK 143 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~ 143 (166)
..+.+||++|+..... .+....+.+++|+|+++... ....+.... +.|+++|+||+|+.+ ......++
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~~------~~~~iiv~NK~Dl~~-~~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEIF------RVADLIVINKVALAE-AVGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHHH------HTCSEEEEECGGGHH-HHTCCHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhhh------hcCCEEEEecccCCc-chhhHHHH
Confidence 4578889988411010 11124678999999886532 111111111 468999999999832 22234566
Q ss_pred HHHHHHHhC--CeEEEEecccCCCC
Q 031083 144 GQELADEYG--IKFFETVSMFNNEW 166 (166)
Q Consensus 144 ~~~~~~~~~--~~~~~~Sa~~~~~v 166 (166)
+.+.++..+ ++++++||++|+|+
T Consensus 177 ~~~~~~~~~~~~~i~~~Sa~~g~gi 201 (221)
T 2wsm_A 177 MKADAKLINPRAKIIEMDLKTGKGF 201 (221)
T ss_dssp HHHHHHHHCTTSEEEECBTTTTBTH
T ss_pred HHHHHHHhCCCCeEEEeecCCCCCH
Confidence 666666654 78999999999874
No 197
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.7e-14 Score=105.78 Aligned_cols=137 Identities=15% Similarity=0.122 Sum_probs=93.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccc----cc---cccc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----TI---TTAY 84 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~---~~~~ 84 (166)
.+...+|.++|.|++|||||+|+|++........+.++.+.....+.+++ .++.++|+||.-.-. .+ ....
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 45567999999999999999999999877667778888888888889988 567888999943211 11 2234
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHh--cCCCCcEEEEEeCCCCCC-------CCcccchHHHHHHHHHhC
Q 031083 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQH--AADNVNKILVGNKADMDE-------SKRAVPTAKGQELADEYG 152 (166)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piivv~~K~Dl~~-------~~~~~~~~~~~~~~~~~~ 152 (166)
++.+|++++|+|+++|.. ....+..++... ...+.|.+++.||.|... .......++++.+...+.
T Consensus 147 i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~ 221 (376)
T 4a9a_A 147 ARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYR 221 (376)
T ss_dssp HHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTT
T ss_pred HHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhc
Confidence 568999999999998644 222222333221 123567888999999621 112234555666655554
No 198
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.57 E-value=9.5e-18 Score=116.54 Aligned_cols=141 Identities=16% Similarity=0.184 Sum_probs=79.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeE------------EEEEEEC-CeEE----------------
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFK------------IRTIELD-GKRI---------------- 64 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~~---------------- 64 (166)
..++|+++|.+|+|||||+++|....+...+.++...++. ...+.++ +..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999987554444444443322 1122221 1111
Q ss_pred ---EEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccch
Q 031083 65 ---KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPT 141 (166)
Q Consensus 65 ---~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~ 141 (166)
.+.+.|++|.-... ..+-...+..+.+.+......... .+...+ ..|.++|+||+|+.+ ......
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~------~~~~iiv~NK~Dl~~-~~~~~~ 184 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGIM------KTADLIVINKIDLAD-AVGADI 184 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH------TTCSEEEEECGGGHH-HHTCCH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhHh------hcCCEEEEeccccCc-hhHHHH
Confidence 24444555421000 011112334556666432111100 001111 467899999999833 223456
Q ss_pred HHHHHHHHHh--CCeEEEEecccCCCC
Q 031083 142 AKGQELADEY--GIKFFETVSMFNNEW 166 (166)
Q Consensus 142 ~~~~~~~~~~--~~~~~~~Sa~~~~~v 166 (166)
+++.++++.+ +++++++||++|+||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv 211 (226)
T 2hf9_A 185 KKMENDAKRINPDAEVVLLSLKTMEGF 211 (226)
T ss_dssp HHHHHHHHHHCTTSEEEECCTTTCTTH
T ss_pred HHHHHHHHHhCCCCeEEEEEecCCCCH
Confidence 6777777765 579999999999875
No 199
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.57 E-value=1.9e-14 Score=111.71 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=84.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCC----------------------CCCCccccceeEeEEEEEEECCeEEEEEEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS----------------------FTTSFITTIGIDFKIRTIELDGKRIKLQIW 69 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 69 (166)
..+..||+|+|..++|||||..+|+... ...+....+++......+.+++ +.+.++
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlI 105 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLL 105 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEE
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEE
Confidence 4567899999999999999999996210 0112222223333345566666 668888
Q ss_pred eCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 031083 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (166)
Q Consensus 70 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~ 137 (166)
||||+..|......-++.+|++|+|+|+...-......-|.+... .++|++++.||+|......
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~----~~lp~i~fINK~Dr~~ad~ 169 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM----RATPVMTFVNKMDREALHP 169 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCCEEEEEECTTSCCCCH
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH----hCCceEEEEecccchhcch
Confidence 999999999999999999999999999998554444444433332 2789999999999855443
No 200
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.52 E-value=5.2e-15 Score=109.41 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=56.5
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc-ccchH
Q 031083 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTA 142 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~-~~~~~ 142 (166)
+.+.||||||... .....+..+|++++|+|....+....+.. .+ ...|+++|+||+|+..... .....
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---~~-----~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---GV-----LELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---TS-----GGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---hH-----hhcCCEEEEECCCCcChhHHHHHHH
Confidence 5689999999432 12234578999999999876554422221 11 1358999999999832111 11111
Q ss_pred HHHHHHHHh-------CCeEEEEecccCCCC
Q 031083 143 KGQELADEY-------GIKFFETVSMFNNEW 166 (166)
Q Consensus 143 ~~~~~~~~~-------~~~~~~~Sa~~~~~v 166 (166)
+........ +.+++++||++|+|+
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi 271 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGL 271 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCH
Confidence 222222222 578999999999874
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.49 E-value=1.6e-13 Score=109.53 Aligned_cols=123 Identities=17% Similarity=0.125 Sum_probs=83.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC--------CC----------CCCccccceeEeEEEEEEECC-----eEEEEEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD--------SF----------TTSFITTIGIDFKIRTIELDG-----KRIKLQI 68 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i 68 (166)
.++..||+|+|..++|||||..+|+.. .. ..+....+++......+.+.+ ..+.+.+
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 367889999999999999999998631 11 111112222222233334432 3578999
Q ss_pred EeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcc
Q 031083 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (166)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~ 138 (166)
+|||||..|.......++-+|++|+|+|+...-......-|.+.... ++|.+++.||+|....+..
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~a~~~ 155 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQGANFL 155 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTTCCHH
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccCccHH
Confidence 99999999999899999999999999999985444444444444433 7899999999998554443
No 202
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.47 E-value=1.2e-13 Score=100.06 Aligned_cols=89 Identities=11% Similarity=0.080 Sum_probs=72.4
Q ss_pred ccccccccccccccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccc-hHHHHHHHHHh
Q 031083 74 QERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP-TAKGQELADEY 151 (166)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~-~~~~~~~~~~~ 151 (166)
+++++.+...+++++|++++|+|+++++ ++..+..|+..+.. .+.|+++|+||+|+.+. ..+. .++..++.+.+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~-~~v~~~~~~~~~~~~~ 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNE-EEKKELERWISIYRDA 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCH-HHHHHHHHHHHHHHHT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCc-cccHHHHHHHHHHHHC
Confidence 6778888888999999999999999986 88888888886654 47899999999999432 2222 45567777788
Q ss_pred CCeEEEEecccCCCC
Q 031083 152 GIKFFETVSMFNNEW 166 (166)
Q Consensus 152 ~~~~~~~Sa~~~~~v 166 (166)
+++++++||++|+|+
T Consensus 142 g~~~~~~SA~~g~gi 156 (302)
T 2yv5_A 142 GYDVLKVSAKTGEGI 156 (302)
T ss_dssp TCEEEECCTTTCTTH
T ss_pred CCeEEEEECCCCCCH
Confidence 999999999999874
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.45 E-value=3.6e-13 Score=99.30 Aligned_cols=90 Identities=12% Similarity=0.076 Sum_probs=50.3
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHH
Q 031083 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAK 143 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~ 143 (166)
+.+.++|++|.... .......+|++++|+|.+.++....+.. .+ ...|.++|+||+|+.+.. .. ...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~-~~-~~~ 233 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIV-PA-RRI 233 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHH-HH-HHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCch-hH-HHH
Confidence 46789999995211 2334568999999999987543222211 11 145789999999983210 00 011
Q ss_pred HHHHHH----------HhCCeEEEEecccCCCC
Q 031083 144 GQELAD----------EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 144 ~~~~~~----------~~~~~~~~~Sa~~~~~v 166 (166)
...+.. .++.+++.+||++|+|+
T Consensus 234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi 266 (349)
T 2www_A 234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGI 266 (349)
T ss_dssp HHHHHHHHTTCC-----CCCEEEECCTTTCTTH
T ss_pred HHHHHHHHHhcCccccCCCceEEEEecCCCCCH
Confidence 222322 12457899999999874
No 204
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.44 E-value=8.9e-14 Score=103.46 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=54.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCe---------------EEEEEEEeCCCccc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQER 76 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~ 76 (166)
.....+|+++|.+|+|||||+|++.+........++.+.+.....+.+++. ...+.+||+||...
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 345689999999999999999999998765555566666666666666543 13589999999765
Q ss_pred ccc-------ccccccccccEEEEEEECCChhh
Q 031083 77 FRT-------ITTAYYRGAMGILLVYDVTDESS 102 (166)
Q Consensus 77 ~~~-------~~~~~~~~~d~~i~v~d~~~~~s 102 (166)
... .+..+++++|++++|+|+++.++
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 433 34556789999999999986544
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.41 E-value=3.2e-14 Score=112.33 Aligned_cols=117 Identities=18% Similarity=0.167 Sum_probs=80.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc--CCCC----------------CCccccceeEeEEEEEEECCeEEEEEEEeCCCccc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD--DSFT----------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 76 (166)
..||+|+|..++|||||..+|+. +... .+....+++......+.+++ +.+.++|||||..
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~D 79 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMD 79 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSS
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHH
Confidence 46899999999999999999863 1110 01111122222223344454 6688899999999
Q ss_pred cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 031083 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (166)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~ 137 (166)
|.......++.+|++|+|+|+...-......-|.+.... ++|.+++.||+|....+.
T Consensus 80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~----~lp~i~~INKmDr~~a~~ 136 (638)
T 3j25_A 80 FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM----GIPTIFFINKIDQNGIDL 136 (638)
T ss_dssp THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH----TCSCEECCEECCSSSCCS
T ss_pred HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc----CCCeEEEEeccccccCCH
Confidence 999899999999999999999984433333333333322 678999999999854443
No 206
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.39 E-value=2.6e-13 Score=99.86 Aligned_cols=91 Identities=14% Similarity=0.106 Sum_probs=52.5
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccc--h
Q 031083 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP--T 141 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~--~ 141 (166)
+.+.|+||||...... .....+|++++|+|.+..+....+.. .. .+.|.++|+||+|+... .... .
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~-~~~~~~~ 216 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNH-TNVAIAR 216 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCH-HHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCCh-HHHHHHH
Confidence 5689999999644332 23578999999999976543221111 11 13578999999998321 1110 1
Q ss_pred HHHHHHHHHh-------CCeEEEEecccCCCC
Q 031083 142 AKGQELADEY-------GIKFFETVSMFNNEW 166 (166)
Q Consensus 142 ~~~~~~~~~~-------~~~~~~~Sa~~~~~v 166 (166)
++.++....+ ..+++++||++|+|+
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi 248 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGI 248 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCH
Confidence 1222222222 357899999999874
No 207
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.37 E-value=6.4e-12 Score=93.63 Aligned_cols=88 Identities=19% Similarity=0.216 Sum_probs=64.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCCC-CCCccccceeEeEEEEEEECCeE---------------EEEEEEeCCCcc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQE 75 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~ 75 (166)
.....+|.++|++|+|||||+|.|.+... .....|+++++.....+.+++.+ ..+.+||+||..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 34568999999999999999999999776 55556666666666667766521 358899999943
Q ss_pred c-------cccccccccccccEEEEEEECCC
Q 031083 76 R-------FRTITTAYYRGAMGILLVYDVTD 99 (166)
Q Consensus 76 ~-------~~~~~~~~~~~~d~~i~v~d~~~ 99 (166)
. +...+...++.+|++++|+|+++
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 22223345578999999999874
No 208
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.37 E-value=6.1e-13 Score=106.02 Aligned_cols=147 Identities=16% Similarity=0.115 Sum_probs=85.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCcc-cccee-----------------------------------------
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFI-TTIGI----------------------------------------- 50 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~~~~----------------------------------------- 50 (166)
....+|+|+|..++|||||+|+|.+..+.+... ..+..
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 345799999999999999999999977632211 11100
Q ss_pred ---------EeEEEEEEECCeEEEEEEEeCCCccc-------------ccccccccc-ccccEEEEEEECCChhhHHHHH
Q 031083 51 ---------DFKIRTIELDGKRIKLQIWDTAGQER-------------FRTITTAYY-RGAMGILLVYDVTDESSFNNIR 107 (166)
Q Consensus 51 ---------~~~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 107 (166)
+.....+...+. .+++|+||||--. ...+...++ ..+|++++|+|++....-....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 001111122211 2578999999432 111222333 5789999999998743322322
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHH----hC-CeEEEEecccCCCC
Q 031083 108 NWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE----YG-IKFFETVSMFNNEW 166 (166)
Q Consensus 108 ~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~~v 166 (166)
.++..+. ..+.|+++|+||+|+....... .+... .+. .+ .+++.+||++|.|+
T Consensus 208 ~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~--~~il~-~~~~~l~lg~~~VV~iSA~~G~Gv 265 (772)
T 3zvr_A 208 KIAKEVD---PQGQRTIGVITKLDLMDEGTDA--RDVLE-NKLLPLRRGYIGVVNRSQKDIDGK 265 (772)
T ss_dssp HHHHHHC---TTCSSEEEEEECTTSSCTTCCS--HHHHT-TCSSCCSSCEEECCCCCCEESSSS
T ss_pred HHHHHHH---hcCCCEEEEEeCcccCCcchhh--HHHHH-HHhhhhhccCCceEEecccccccc
Confidence 3333333 3468999999999995432221 11111 111 12 35677999999875
No 209
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.37 E-value=1.5e-12 Score=92.10 Aligned_cols=69 Identities=14% Similarity=-0.071 Sum_probs=40.6
Q ss_pred EEEEEEeCCCccccccccc------cccccccEEEEEEECCChhhHHHHHHHHH-HHHHhcCCCCcEEEEEeCCCCC
Q 031083 64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTDESSFNNIRNWMR-NIDQHAADNVNKILVGNKADMD 133 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~piivv~~K~Dl~ 133 (166)
+.+.+||+||+.+...... ..+.+ +++++++|.....+......... ........+.|+++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccc
Confidence 4689999999765433211 23456 88999998764322222221111 1111112267999999999984
No 210
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.23 E-value=3.2e-12 Score=86.83 Aligned_cols=92 Identities=4% Similarity=-0.052 Sum_probs=55.9
Q ss_pred CCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHH---HH-Hhc-CCCCcEEEEEeCC-CCCCCCcccchHHH
Q 031083 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRN---ID-QHA-ADNVNKILVGNKA-DMDESKRAVPTAKG 144 (166)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~---~~-~~~-~~~~piivv~~K~-Dl~~~~~~~~~~~~ 144 (166)
.+||+.++.+|..|+.++|++|||+|.+|.+..+ .+..+.+ +. ... ..+.|++|++||. |++.. .+..|+
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A---ms~~EI 184 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCFYL 184 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB---CCHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC---CCHHHH
Confidence 3478899999999999999999999999976544 3333322 22 221 2578999999995 67433 333333
Q ss_pred HHHHH----HhCCeEEEEecccCCCC
Q 031083 145 QELAD----EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 145 ~~~~~----~~~~~~~~~Sa~~~~~v 166 (166)
.+... .....++.|||++|+|+
T Consensus 185 ~e~L~L~~l~R~W~Iq~csA~TGeGL 210 (227)
T 3l82_B 185 AHELHLNLLNHPWLVQDTEAETLTGF 210 (227)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTH
T ss_pred HHHcCCcCCCCCEEEEEeECCCCcCH
Confidence 32221 12246889999999974
No 211
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.19 E-value=3.8e-11 Score=88.13 Aligned_cols=91 Identities=14% Similarity=0.105 Sum_probs=50.6
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHH
Q 031083 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAK 143 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~ 143 (166)
..+.|+||+|...-. ......+|.+++++|....+..+.+... +. ..+.++++||+|+... .......
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~-~~~s~~~ 215 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDG-ERRASAA 215 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCC-HHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCc-hhHHHHH
Confidence 568899999953211 1234679999999998754332111111 11 2356777899997321 1111122
Q ss_pred HHHHHHHh----------CCeEEEEecccCCCC
Q 031083 144 GQELADEY----------GIKFFETVSMFNNEW 166 (166)
Q Consensus 144 ~~~~~~~~----------~~~~~~~Sa~~~~~v 166 (166)
.+++.... ..+++.+||++|+++
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi 248 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGL 248 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCH
Confidence 23333321 357889999999874
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.07 E-value=7.1e-11 Score=83.93 Aligned_cols=93 Identities=6% Similarity=-0.032 Sum_probs=60.4
Q ss_pred CCCccccccccccccccccEEEEEEECCChhhHH---HHHHHHHHHHHh-cCCCCcEEEEEeC-CCCCCCCcccchHHHH
Q 031083 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWMRNIDQH-AADNVNKILVGNK-ADMDESKRAVPTAKGQ 145 (166)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~-~~~~~piivv~~K-~Dl~~~~~~~~~~~~~ 145 (166)
.+||+..+.+|..|+.++|++|||+|.+|++.++ ++.++...+... ...+.|++|++|| .|++.. .+..|+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---ms~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---CCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---CCHHHHH
Confidence 4578899999999999999999999999987654 222222222222 1357899999996 587433 2333332
Q ss_pred HHHH----HhCCeEEEEecccCCCC
Q 031083 146 ELAD----EYGIKFFETVSMFNNEW 166 (166)
Q Consensus 146 ~~~~----~~~~~~~~~Sa~~~~~v 166 (166)
+... .....++.|||++|+|+
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL 295 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGF 295 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTH
T ss_pred HHcCCccCCCcEEEEecccCCCcCH
Confidence 2211 11246889999999974
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.96 E-value=5.3e-11 Score=88.36 Aligned_cols=136 Identities=14% Similarity=0.165 Sum_probs=75.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC------CCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccccc----ccc----
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----TIT---- 81 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~---- 81 (166)
.+++++|.+|+|||||+|+|.+. .......+.++. ....+..+. .+.++||||-.... .+.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~--~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTL--DMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSC--EEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEE--eeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 57999999999999999999975 222222233332 223334433 26888999943211 111
Q ss_pred cccc--ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEe
Q 031083 82 TAYY--RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETV 159 (166)
Q Consensus 82 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (166)
..++ +..+.++++++....-.+..+.. +......+.|+++++||.|..... ......+.+.+..|..+...+
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~--~~~~~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRT--KLEKADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEE--EGGGHHHHHHHHBTTTBCSSC
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccc--cHHHHHHHHHHhcCCccCCCC
Confidence 1111 56788999998742111101100 111223468999999999973221 122333455566665554444
Q ss_pred ccc
Q 031083 160 SMF 162 (166)
Q Consensus 160 a~~ 162 (166)
+..
T Consensus 312 ~~~ 314 (369)
T 3ec1_A 312 KRY 314 (369)
T ss_dssp GGG
T ss_pred chh
Confidence 443
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.95 E-value=1e-09 Score=82.48 Aligned_cols=26 Identities=31% Similarity=0.648 Sum_probs=22.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCC
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSF 40 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~ 40 (166)
.++++|+|++|+|||||++.+.+..+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccc
Confidence 46799999999999999999998643
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.94 E-value=5.7e-09 Score=74.28 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=22.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
.++++++|++|+|||||++.+.+.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 579999999999999999999873
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.86 E-value=1.6e-10 Score=85.70 Aligned_cols=131 Identities=12% Similarity=0.111 Sum_probs=68.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCC-----CC--CccccceeEeEEEEEEECCeEEEEEEEeCCCcccccc----cccc-
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSF-----TT--SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----ITTA- 83 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~- 83 (166)
.+|+++|.+|+|||||+|+|.+... .. ...+.++ .....+..++. +.++||||-..... +...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT--LDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCee--cceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence 5899999999999999999997521 11 1112222 22223333332 67889999432211 1111
Q ss_pred -----ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEE
Q 031083 84 -----YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFE 157 (166)
Q Consensus 84 -----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (166)
..+..+.++++++.........+.. +......+.|+++++||+|.... .......+.+.+..|..++.
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~--~~~~~~~~~~~~~~g~~l~p 308 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHR--TKLEKADELYKNHAGDLLSP 308 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEE--EEHHHHHHHHHHHBTTTBCS
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccc--ccHHHHHHHHHHHhCCccCC
Confidence 1245778888888632111111100 11122346799999999997322 11122233444555544433
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.85 E-value=1.7e-09 Score=80.23 Aligned_cols=86 Identities=21% Similarity=0.308 Sum_probs=63.0
Q ss_pred CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHH----HHHH
Q 031083 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKG----QELA 148 (166)
Q Consensus 73 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~----~~~~ 148 (166)
.+++|......+++.++++++|+|+++++ ..|...+.+... +.|+++|+||+|+.+.. ...+++ ..++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~--~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS--VKHDKVKHWMRYSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT--SCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc--cCHHHHHHHHHHHH
Confidence 45778888888888999999999999864 345555555443 78999999999994332 222333 3446
Q ss_pred HHhCC---eEEEEecccCCCC
Q 031083 149 DEYGI---KFFETVSMFNNEW 166 (166)
Q Consensus 149 ~~~~~---~~~~~Sa~~~~~v 166 (166)
++.|+ .++++||++|.|+
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi 147 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGI 147 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTH
T ss_pred HHcCCCcccEEEEeCCCCcCH
Confidence 67787 7999999999874
No 218
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.72 E-value=2.9e-09 Score=79.07 Aligned_cols=86 Identities=20% Similarity=0.253 Sum_probs=61.1
Q ss_pred CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHH----HHHH
Q 031083 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKG----QELA 148 (166)
Q Consensus 73 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~----~~~~ 148 (166)
.++.|......+++.++++++|+|++++++ .|...+.+... +.|+++|+||+|+.+.. ...++. .+++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~--~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS--VKYPKLLRWMRRMA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT--CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc--cCHHHHHHHHHHHH
Confidence 477888888888889999999999999774 33344444333 67999999999995432 222333 3345
Q ss_pred HHhCC---eEEEEecccCCCC
Q 031083 149 DEYGI---KFFETVSMFNNEW 166 (166)
Q Consensus 149 ~~~~~---~~~~~Sa~~~~~v 166 (166)
+..|. .++.+||++|.|+
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi 149 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGM 149 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTH
T ss_pred HHcCCCcccEEEEECCCCCCH
Confidence 66776 7899999999874
No 219
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.62 E-value=2.2e-08 Score=71.73 Aligned_cols=88 Identities=20% Similarity=0.129 Sum_probs=57.6
Q ss_pred EEeCCCcc-ccccccccccccccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHH
Q 031083 68 IWDTAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFN--NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKG 144 (166)
Q Consensus 68 i~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~ 144 (166)
+-..||+. .........++.+|++++|+|+.+|.+.. .+..++ .+.|.++|+||+|+.+. ...+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~---~~~~~~ 71 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADA---AVTQQW 71 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCH---HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCH---HHHHHH
Confidence 34678876 33445566788999999999999987764 333332 36799999999999431 112223
Q ss_pred HHHHHHhCCeEEEEecccCCCC
Q 031083 145 QELADEYGIKFFETVSMFNNEW 166 (166)
Q Consensus 145 ~~~~~~~~~~~~~~Sa~~~~~v 166 (166)
.++.++.+++++.+||++|.++
T Consensus 72 ~~~~~~~g~~~i~iSA~~~~gi 93 (282)
T 1puj_A 72 KEHFENQGIRSLSINSVNGQGL 93 (282)
T ss_dssp HHHHHTTTCCEEECCTTTCTTG
T ss_pred HHHHHhcCCcEEEEECCCcccH
Confidence 4444556789999999998874
No 220
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.61 E-value=8.3e-08 Score=73.75 Aligned_cols=130 Identities=13% Similarity=0.120 Sum_probs=69.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHh------cCCCCC-C---cccc-----------ceeEeEEEEE--------------
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFS------DDSFTT-S---FITT-----------IGIDFKIRTI-------------- 57 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~------~~~~~~-~---~~~~-----------~~~~~~~~~~-------------- 57 (166)
.....|+++|.+|+||||+++.|. +..... . +.+. .++.++....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999998 322100 0 0000 0111111000
Q ss_pred -EECCeEEEEEEEeCCCcccccc-cccc---c--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeC
Q 031083 58 -ELDGKRIKLQIWDTAGQERFRT-ITTA---Y--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK-ILVGNK 129 (166)
Q Consensus 58 -~~~~~~~~~~i~D~~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ivv~~K 129 (166)
...+ +.++|+||||...... +... . ...+|.+++|+|+...... ......+.. ..|+ .+|+||
T Consensus 179 ~~~~~--~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~----~~~i~gvVlNK 249 (504)
T 2j37_W 179 FKNEN--FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD----KVDVASVIVTK 249 (504)
T ss_dssp HHHTT--CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH----HHCCCCEEEEC
T ss_pred HHHCC--CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh----hcCceEEEEeC
Confidence 0022 4688999999653221 1111 1 2268999999999874331 112222222 1465 889999
Q ss_pred CCCCCCCcccchHHHHHHHHHhCCeEE
Q 031083 130 ADMDESKRAVPTAKGQELADEYGIKFF 156 (166)
Q Consensus 130 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (166)
.|.... . ..+..+....+.|+.
T Consensus 250 ~D~~~~-~----g~~l~~~~~~g~PI~ 271 (504)
T 2j37_W 250 LDGHAK-G----GGALSAVAATKSPII 271 (504)
T ss_dssp TTSCCC-C----THHHHHHHHHCCCEE
T ss_pred Cccccc-h----HHHHHHHHHhCCCeE
Confidence 997321 1 123445566776653
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.54 E-value=1.1e-07 Score=68.15 Aligned_cols=57 Identities=28% Similarity=0.386 Sum_probs=35.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCC-CCccccceeEeEEEEEEECCeEEEEEEEeCCCc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 74 (166)
...++++++|.+|+|||||+|++.+.... ....+..+.... .+..+. .+.++||||.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~ 175 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGI 175 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCc
Confidence 45689999999999999999999986532 222222222221 222222 4788999994
No 222
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.44 E-value=1.3e-06 Score=65.53 Aligned_cols=110 Identities=13% Similarity=0.205 Sum_probs=56.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccc-eeEeEEEEEEECCeEE-EEEEEeCCCcccccc-----cccccccc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTI-GIDFKIRTIELDGKRI-KLQIWDTAGQERFRT-----ITTAYYRG 87 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~i~D~~g~~~~~~-----~~~~~~~~ 87 (166)
...++++|++|+|||||+|.+.+-..+....... +.+.....+.++.... .+++||++|-..... +....+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 3479999999999999999999833221111100 0000000111111111 478899998431111 11112334
Q ss_pred ccEEEEEEECC--ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031083 88 AMGILLVYDVT--DESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132 (166)
Q Consensus 88 ~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl 132 (166)
.+..++ ++.. ..... . +...+.. .+.|+++|.||.|+
T Consensus 149 ~~~~~~-lS~G~~~kqrv-~---la~aL~~---~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 149 YDFFII-ISATRFKKNDI-D---IAKAISM---MKKEFYFVRTKVDS 187 (413)
T ss_dssp CSEEEE-EESSCCCHHHH-H---HHHHHHH---TTCEEEEEECCHHH
T ss_pred cCCeEE-eCCCCccHHHH-H---HHHHHHh---cCCCeEEEEecCcc
Confidence 455555 7765 22221 1 2222222 25799999999997
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.44 E-value=8.1e-08 Score=68.03 Aligned_cols=56 Identities=23% Similarity=0.370 Sum_probs=34.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCcc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 75 (166)
++++++|.+|+|||||+|++.+...... .++.+.+.....+..+. .+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCcc
Confidence 6999999999999999999998665321 11111111111222222 57899999954
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.43 E-value=1.6e-06 Score=65.54 Aligned_cols=86 Identities=15% Similarity=0.050 Sum_probs=50.8
Q ss_pred EEEEEEeCCCccccccccc------cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 031083 64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~ 137 (166)
+.+.|+||+|......... ......|.+++|+|+........ ....+... -.+..+|.||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCccc--
Confidence 4578899999533221111 11224788999999887433222 22222221 2346789999997221
Q ss_pred ccchHHHHHHHHHhCCeEEEEec
Q 031083 138 AVPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
.-.+..+....+.|+.+++.
T Consensus 255 ---gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 255 ---GGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp ---HHHHHHHHHTTCCCEEEEEC
T ss_pred ---ccHHHHHHHHHCCCEEEEEc
Confidence 12345666778899887776
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.30 E-value=4e-07 Score=71.18 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=25.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.....+|+|+|.+++|||||+|+|.+..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 4567899999999999999999999865
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.29 E-value=3.5e-06 Score=63.74 Aligned_cols=84 Identities=17% Similarity=0.075 Sum_probs=49.1
Q ss_pred EEEEEEeCCCcccccc-cc-----ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-c-EEEEEeCCCCCCC
Q 031083 64 IKLQIWDTAGQERFRT-IT-----TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNV-N-KILVGNKADMDES 135 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-iivv~~K~Dl~~~ 135 (166)
+.+.++|++|...... +. ......+|.+++|+|+..... .......+. ... | ..+|.||.|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCST
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCccc
Confidence 4578999999543211 10 112236899999999876432 111222221 234 5 8899999997221
Q ss_pred CcccchHHHHHHHHHhCCeEEEEe
Q 031083 136 KRAVPTAKGQELADEYGIKFFETV 159 (166)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~S 159 (166)
...+..+....+.++..++
T Consensus 254 -----~g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 254 -----GGGALSAVAETKAPIKFIG 272 (432)
T ss_dssp -----THHHHHHHHHSSCCEEEEC
T ss_pred -----hHHHHHHHHHHCCCEEEee
Confidence 1234557777888776653
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.25 E-value=1.4e-06 Score=65.83 Aligned_cols=86 Identities=15% Similarity=0.063 Sum_probs=51.1
Q ss_pred EEEEEEeCCCccc--ccccc----ccc--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031083 64 IKLQIWDTAGQER--FRTIT----TAY--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135 (166)
Q Consensus 64 ~~~~i~D~~g~~~--~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~ 135 (166)
+.+.+.|++|... ..... ... ....+.+++|+|+......... ...+... -.+..+|.||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~---~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA---SPIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH---CSSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc---cCCcEEEEecccccc-
Confidence 4577889999543 11111 111 1135889999999874432222 2333222 235788999999621
Q ss_pred CcccchHHHHHHHHHhCCeEEEEec
Q 031083 136 KRAVPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
..-.+..+....+.|+.+++.
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~ 273 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT 273 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC
T ss_pred ----cchHHHHHHHHHCCCEEEEEC
Confidence 223456677778999887775
No 228
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.16 E-value=3.7e-06 Score=60.77 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=55.3
Q ss_pred ccccccccccccEEEEEEECCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcc-cchHHHHHHHHHhCCeE
Q 031083 78 RTITTAYYRGAMGILLVYDVTDESSFN-NIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTAKGQELADEYGIKF 155 (166)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~-~~~~~~~~~~~~~~~~~ 155 (166)
+.+......++|.+++|+|+.+|..-. .+..++.... ..+.|.+||+||+||.+.... ...++..++-+..|.++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 344455678999999999999766533 3333332221 236789999999999443110 01233444445668899
Q ss_pred EEEecccCCCC
Q 031083 156 FETVSMFNNEW 166 (166)
Q Consensus 156 ~~~Sa~~~~~v 166 (166)
+.+||++|.++
T Consensus 154 ~~~sa~~~~g~ 164 (307)
T 1t9h_A 154 YLTSSKDQDSL 164 (307)
T ss_dssp EECCHHHHTTC
T ss_pred EEEecCCCCCH
Confidence 99999887653
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.10 E-value=5.9e-07 Score=63.59 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=52.2
Q ss_pred CCCccc-cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHH
Q 031083 71 TAGQER-FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD 149 (166)
Q Consensus 71 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~ 149 (166)
.|||.. ........++++|++++|+|+.+|.+..... +. + . +.|.++|+||+|+.+. ...++..++.+
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~~~---~~~~~~~~~~~ 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIADE---KTTKKWVEFFK 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGSCH---HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCCCH---HHHHHHHHHHH
Confidence 466652 2234556778999999999999987754211 01 1 1 6799999999999432 11223344455
Q ss_pred HhCCeEEEEecccCCC
Q 031083 150 EYGIKFFETVSMFNNE 165 (166)
Q Consensus 150 ~~~~~~~~~Sa~~~~~ 165 (166)
+.+.++ .+||++|.+
T Consensus 73 ~~g~~v-~iSa~~~~g 87 (262)
T 3cnl_A 73 KQGKRV-ITTHKGEPR 87 (262)
T ss_dssp HTTCCE-EECCTTSCH
T ss_pred HcCCeE-EEECCCCcC
Confidence 667888 999999875
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.06 E-value=6.7e-06 Score=64.81 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSF 40 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~ 40 (166)
.++|+|+.|||||||++.+.+-..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-
T ss_pred eEEEECCCCChHHHHHHHHhCCCC
Confidence 499999999999999999998643
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.02 E-value=1.7e-05 Score=57.05 Aligned_cols=84 Identities=14% Similarity=0.066 Sum_probs=51.5
Q ss_pred EEEEEEeCCCccc--ccc-ccc-----cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 031083 64 IKLQIWDTAGQER--FRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDE 134 (166)
Q Consensus 64 ~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~~K~Dl~~ 134 (166)
+.+++.||||... ... +.. .....+|.+++|+|+.... ........+.. ..+ ..+|.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 4588999999765 221 111 1234689999999987532 22222222222 345 778999999622
Q ss_pred CCcccchHHHHHHHHHhCCeEEEEe
Q 031083 135 SKRAVPTAKGQELADEYGIKFFETV 159 (166)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~S 159 (166)
....+..++...+.++..++
T Consensus 254 -----~~g~~~~~~~~~~~pi~~i~ 273 (297)
T 1j8m_F 254 -----KGGGALSAVAATGATIKFIG 273 (297)
T ss_dssp -----THHHHHHHHHTTTCCEEEEE
T ss_pred -----chHHHHHHHHHHCcCEEEEe
Confidence 12345677888899888776
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.87 E-value=2.3e-05 Score=57.80 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=47.6
Q ss_pred ccccccEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEeccc
Q 031083 84 YYRGAMGILLVYDVTDESS-FNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVSMF 162 (166)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (166)
...++|.+++|.+.. |.. ...+..++-.... .+.|.+||+||+||.+.......++........|.+++.+||++
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 357899999887754 543 3334444332221 26688999999999432210001222333345688999999999
Q ss_pred CCC
Q 031083 163 NNE 165 (166)
Q Consensus 163 ~~~ 165 (166)
|.+
T Consensus 203 ~~g 205 (358)
T 2rcn_A 203 QDG 205 (358)
T ss_dssp TBT
T ss_pred CcC
Confidence 876
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.77 E-value=6.9e-07 Score=68.30 Aligned_cols=102 Identities=11% Similarity=0.127 Sum_probs=56.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcCCCCCCccccceeEeEEEEEEECCeEEEEEEEeCCCccc--ccccc--------c
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTIT--------T 82 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~ 82 (166)
....+|+++|.+|+||||+.++|........ ..+.............+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4557899999999999999999975321110 11111000000000011112346789888632 22222 4
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHh
Q 031083 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQH 116 (166)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 116 (166)
.++...++.++|+|.++. +.+....|+..+.+.
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 455567888999999986 445555565555443
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.74 E-value=4e-05 Score=58.12 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=22.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
..+..-|.|+|++++|||+|+|.|++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 45667899999999999999999985
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.57 E-value=4.4e-05 Score=50.81 Aligned_cols=22 Identities=32% Similarity=0.762 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998863
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.50 E-value=5.6e-05 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
-++++|++|||||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999863
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.46 E-value=6.7e-05 Score=50.68 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
-.++|+|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999975
No 238
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.40 E-value=0.00012 Score=49.54 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=21.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
..--|+|+|++|+|||||++.|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4456889999999999999999853
No 239
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.38 E-value=9.2e-05 Score=49.41 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031083 18 LLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~ 37 (166)
++++|++|||||||++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999985
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.37 E-value=0.0001 Score=49.69 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 241
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.34 E-value=0.00012 Score=48.78 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
-.++++|++|||||||++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999874
No 242
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.34 E-value=0.0001 Score=48.51 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=17.6
Q ss_pred eEEEEcCCCCcHHHHHHHHh
Q 031083 17 KLLLIGDSGVGKSCLLLRFS 36 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~ 36 (166)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999644
No 243
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.34 E-value=0.00011 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
--++|+|++|||||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 46889999999999999999874
No 244
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.33 E-value=0.00011 Score=49.79 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
--++++|++|||||||++.+.+-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35889999999999999999864
No 245
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.30 E-value=0.00013 Score=50.04 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
-.++|+|++|+|||||++.+.+-
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999873
No 246
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.29 E-value=0.00016 Score=48.44 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031083 18 LLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~ 37 (166)
|+|+||+|+||+||+++|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999975
No 247
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.26 E-value=0.00027 Score=47.58 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=23.6
Q ss_pred cCCCCCceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
+.........|+|.|++||||||+.+.|..
T Consensus 8 ~~~~~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 8 PAFSPDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CCSCTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 333444556899999999999999998863
No 248
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.26 E-value=0.00019 Score=48.70 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=21.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
+....|.|+|++|||||||++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998865
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.24 E-value=0.00017 Score=49.00 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
--|+++|++|+|||||++.|...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999999864
No 250
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.23 E-value=0.00024 Score=48.05 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=21.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
....|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 251
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.23 E-value=0.00021 Score=49.34 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=21.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
......+|+|.|++||||||+.+.|..
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344557899999999999999999864
No 252
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.21 E-value=0.00019 Score=49.84 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998743
No 253
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.19 E-value=0.00022 Score=46.51 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999998744
No 254
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.19 E-value=0.0078 Score=45.55 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=47.1
Q ss_pred EEEEEEeCCCcccccc-ccc-----cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 031083 64 IKLQIWDTAGQERFRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESK 136 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~~K~Dl~~~~ 136 (166)
+.++|+|+||.-.... +.. ......+.+++|+|+...... ......+.. ..+ .-+|.||.|....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~- 255 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDAR- 255 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSC-
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCcc-
Confidence 4588889999644322 111 113357889999998764322 122222222 234 3578999997221
Q ss_pred cccchHHHHHHHHHhCCeEEEEe
Q 031083 137 RAVPTAKGQELADEYGIKFFETV 159 (166)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~S 159 (166)
. ..+..+....+.++..+.
T Consensus 256 ~----g~~l~i~~~~~~Pi~~iG 274 (433)
T 2xxa_A 256 G----GAALSIRHITGKPIKFLG 274 (433)
T ss_dssp C----THHHHHHHHHCCCEEEEE
T ss_pred H----HHHHHHHHHHCCCeEEEe
Confidence 1 234567777787765443
No 255
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.18 E-value=0.00033 Score=45.98 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|+++|++||||||+.+.+..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 256
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.15 E-value=0.00027 Score=47.82 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-|+|+|++||||||+++.|..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 257
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.15 E-value=0.00024 Score=49.00 Aligned_cols=23 Identities=39% Similarity=0.426 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 258
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.14 E-value=0.00025 Score=47.78 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
..|+++|++||||||+++.+.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998643
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.13 E-value=0.00027 Score=46.27 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
..|+++|++||||||+.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999763
No 260
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.13 E-value=0.00026 Score=47.15 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
-++++|++||||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 261
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.12 E-value=0.00029 Score=49.07 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998853
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.11 E-value=0.00032 Score=45.72 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCcHHHHHHHH
Q 031083 16 IKLLLIGDSGVGKSCLLLRF 35 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l 35 (166)
.-|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 263
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.09 E-value=0.00031 Score=51.81 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSF 40 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~ 40 (166)
.++++|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999998543
No 264
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.09 E-value=0.0003 Score=49.68 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-++++|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 265
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.09 E-value=0.00034 Score=47.41 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...|.++|+.|||||||++.+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 266
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.09 E-value=0.0003 Score=50.04 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 267
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.09 E-value=0.00031 Score=47.35 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...|+++|++||||||+++.+.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999865
No 268
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.08 E-value=0.00032 Score=48.02 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.07 E-value=0.00032 Score=48.77 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.07 E-value=0.00036 Score=45.50 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 271
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.07 E-value=0.00039 Score=48.41 Aligned_cols=21 Identities=24% Similarity=0.616 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHh
Q 031083 16 IKLLLIGDSGVGKSCLLLRFS 36 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~ 36 (166)
-.|+|+|++|||||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 272
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.06 E-value=0.00046 Score=45.89 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
...+|+++|++||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998653
No 273
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.06 E-value=0.00033 Score=49.56 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998743
No 274
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.05 E-value=0.00044 Score=45.43 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 275
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.05 E-value=0.00034 Score=49.25 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 276
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.05 E-value=0.00038 Score=47.33 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
No 277
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.04 E-value=0.00034 Score=49.33 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
=.++++|++|||||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999999876
No 278
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.04 E-value=0.0005 Score=46.24 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=22.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
......|+|.|++||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44557899999999999999999864
No 279
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.04 E-value=0.00039 Score=48.47 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 280
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.03 E-value=0.0018 Score=49.14 Aligned_cols=64 Identities=25% Similarity=0.281 Sum_probs=40.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc------------------CCCCC---CccccceeEeEEEEEEE---CCeEEEEE
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSD------------------DSFTT---SFITTIGIDFKIRTIEL---DGKRIKLQ 67 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~------------------~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~ 67 (166)
..+..-|.|+|+.++|||+|+|.|+. ..|.. ....|.++-.....+.. ++..+.+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 45667788999999999999996541 22221 12234444333222211 56678999
Q ss_pred EEeCCCcc
Q 031083 68 IWDTAGQE 75 (166)
Q Consensus 68 i~D~~g~~ 75 (166)
+.||.|..
T Consensus 144 llDTEG~~ 151 (457)
T 4ido_A 144 LMDTQGTF 151 (457)
T ss_dssp EEEECCBT
T ss_pred EEeccCCC
Confidence 99999954
No 281
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.03 E-value=0.00036 Score=46.80 Aligned_cols=21 Identities=38% Similarity=0.716 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
.++++|+.|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 588999999999999999876
No 282
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.03 E-value=0.00037 Score=49.26 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999998743
No 283
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.03 E-value=0.00037 Score=48.15 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 284
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.03 E-value=0.0004 Score=47.23 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999954
No 285
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.03 E-value=0.0004 Score=48.58 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 286
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.02 E-value=0.00039 Score=48.92 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 287
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.01 E-value=0.00039 Score=48.44 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998743
No 288
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.01 E-value=0.00042 Score=48.55 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 289
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.01 E-value=0.0004 Score=48.64 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998743
No 290
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.99 E-value=0.00045 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 291
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.99 E-value=0.00053 Score=45.98 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=22.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
......|+|.|++||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 344578999999999999999998764
No 292
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.98 E-value=0.00046 Score=45.36 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 293
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.97 E-value=0.00036 Score=46.08 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-.++++|++|+|||||++.+.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999876
No 294
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.97 E-value=0.00047 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...|+|+|++||||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 295
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.97 E-value=0.00047 Score=45.65 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
..-++++|++|+|||||++++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 346899999999999999999863
No 296
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.97 E-value=0.00056 Score=47.17 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
.....-|+|.|+.||||||+++.+.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345568999999999999999998764
No 297
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.97 E-value=0.00043 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++|+|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 298
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.97 E-value=0.00048 Score=48.56 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999874
No 299
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.96 E-value=0.0005 Score=49.00 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998743
No 300
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.96 E-value=0.00053 Score=46.14 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-.|+++|++||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
No 301
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.95 E-value=0.00033 Score=47.76 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 302
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.95 E-value=0.00048 Score=49.69 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
=.++|+|++|+|||||++.+.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 4689999999999999999874
No 303
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.94 E-value=0.00029 Score=48.55 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=15.0
Q ss_pred eEEEEcCCCCcHHHHHHHHh-cC
Q 031083 17 KLLLIGDSGVGKSCLLLRFS-DD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~-~~ 38 (166)
-++++|++|||||||++.+. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 53
No 304
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.94 E-value=0.00049 Score=48.33 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
No 305
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.94 E-value=0.00051 Score=46.23 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
.+|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 306
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.93 E-value=0.0005 Score=48.63 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998743
No 307
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.93 E-value=0.00054 Score=47.44 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=18.4
Q ss_pred eEEEEcCCCCcHHHHHHHHh
Q 031083 17 KLLLIGDSGVGKSCLLLRFS 36 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~ 36 (166)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57899999999999999887
No 308
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.92 E-value=0.00073 Score=44.92 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...|++.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 309
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.91 E-value=0.00053 Score=46.17 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=20.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...-|.++|++||||||+.+.+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998865
No 310
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.91 E-value=0.00063 Score=46.27 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
.+|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999865
No 311
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.90 E-value=0.00074 Score=47.00 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...+|++.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999964
No 312
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.90 E-value=0.00072 Score=45.60 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 313
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.90 E-value=0.00069 Score=48.73 Aligned_cols=24 Identities=38% Similarity=0.331 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSF 40 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~ 40 (166)
.++++|++|+|||||+|.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999987543
No 314
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.89 E-value=0.00062 Score=46.56 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|.++|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 315
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.89 E-value=0.00066 Score=45.02 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 316
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.89 E-value=0.0011 Score=47.17 Aligned_cols=27 Identities=37% Similarity=0.306 Sum_probs=22.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 11 DYDYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.+.....|+|.|++||||||+.+.|..
T Consensus 71 ~~~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 71 LPSGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp SCTTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999999863
No 317
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.88 E-value=0.00053 Score=46.86 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
-++++|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 318
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.88 E-value=0.00064 Score=48.00 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998854
No 319
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.88 E-value=0.00066 Score=45.49 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999875
No 320
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.88 E-value=0.00081 Score=44.49 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...|++.|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 321
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.87 E-value=0.00082 Score=48.66 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=22.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.....-|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34557899999999999999999865
No 322
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.86 E-value=0.0002 Score=51.77 Aligned_cols=24 Identities=42% Similarity=0.542 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-.++++|++|+|||||+|.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 378999999999999999998753
No 323
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.86 E-value=0.00055 Score=50.56 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
.-+++|+|++|+|||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999874
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.85 E-value=0.00073 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 325
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.85 E-value=0.00065 Score=48.92 Aligned_cols=23 Identities=43% Similarity=0.678 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
--++++|++|+|||||+|.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 357899999999999999998 43
No 326
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.85 E-value=0.00067 Score=46.14 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
.+|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 327
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.85 E-value=0.00074 Score=44.68 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 328
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.84 E-value=0.00063 Score=50.16 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999854
No 329
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.83 E-value=0.0011 Score=44.75 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=22.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
.....|+++|++||||||+.+.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34467999999999999999999864
No 330
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.81 E-value=0.00067 Score=50.03 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
.++|+|++|||||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999876
No 331
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.81 E-value=0.00084 Score=45.82 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|+++|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 332
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.80 E-value=0.00035 Score=46.11 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
.+.|+|++|||||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999873
No 333
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.80 E-value=0.0005 Score=49.65 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++|+|+.|+|||||++.+.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 68999999999999999998743
No 334
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.80 E-value=0.00095 Score=47.70 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...-|++.|++||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999964
No 335
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.79 E-value=0.00077 Score=49.66 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-++++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 336
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.79 E-value=0.00093 Score=46.47 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=21.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...-|.++|+.|||||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999865
No 337
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.77 E-value=0.00084 Score=49.62 Aligned_cols=23 Identities=35% Similarity=0.314 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-+.++|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999998744
No 338
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.77 E-value=0.00084 Score=49.89 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999998844
No 339
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.77 E-value=0.00081 Score=48.17 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999999874
No 340
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.77 E-value=0.00083 Score=49.57 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999998743
No 341
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.76 E-value=0.00078 Score=47.82 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031083 18 LLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~ 38 (166)
++++|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999873
No 342
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.76 E-value=0.001 Score=44.80 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|++.|++||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 343
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.76 E-value=0.00086 Score=44.02 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 344
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.76 E-value=0.00086 Score=49.53 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998853
No 345
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.76 E-value=0.0011 Score=44.11 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|++.|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 346
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.75 E-value=0.00089 Score=45.93 Aligned_cols=22 Identities=23% Similarity=0.579 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|+|.|++||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999863
No 347
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.75 E-value=0.00084 Score=45.88 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 348
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.75 E-value=0.0013 Score=43.56 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|++.|++||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 349
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.74 E-value=0.0011 Score=43.61 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...|++.|++|+||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35799999999999999999873
No 350
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.74 E-value=0.0014 Score=46.97 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=21.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
......|+|.|++|||||||.+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988754
No 351
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.73 E-value=0.0013 Score=47.87 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=21.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
....+-|.|+|++|||||||++.+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998853
No 352
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.73 E-value=0.00094 Score=49.52 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-++++|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999998743
No 353
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.73 E-value=0.00092 Score=49.58 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999998854
No 354
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.72 E-value=0.0011 Score=43.10 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 355
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.72 E-value=0.00091 Score=46.64 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031083 18 LLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~ 38 (166)
++++|++|+|||+|++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999863
No 356
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.71 E-value=0.0013 Score=44.29 Aligned_cols=25 Identities=28% Similarity=0.178 Sum_probs=21.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
....-|.++|++|||||||++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 357
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.70 E-value=0.00087 Score=49.48 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-.++|+|++|+|||||++.+.+-.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 379999999999999999998743
No 358
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.70 E-value=0.0017 Score=41.30 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999988764
No 359
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.70 E-value=0.0011 Score=43.57 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-.+++.|++|+|||+|++.+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
No 360
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.70 E-value=0.00061 Score=43.84 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
-.++++|++|+|||+|++.+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999873
No 361
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.69 E-value=0.0011 Score=45.43 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 362
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.69 E-value=0.00088 Score=48.86 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|++|||||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998743
No 363
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.69 E-value=0.0013 Score=47.43 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
....-|.|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999999876
No 364
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.67 E-value=0.0013 Score=44.07 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
..|++.|++||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 365
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.67 E-value=0.0017 Score=42.97 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
....|++.|.+|+||||+.+.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 366
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.64 E-value=0.0013 Score=44.47 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...|++.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999874
No 367
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.64 E-value=0.0011 Score=49.16 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
-.++|+|++||||||+++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999986
No 368
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.64 E-value=0.00078 Score=49.50 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998743
No 369
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.63 E-value=0.0013 Score=43.75 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|++.|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 370
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.63 E-value=0.0014 Score=43.16 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..+.++|++|+|||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999875
No 371
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.62 E-value=0.0011 Score=45.19 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
.+|+|.|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999864
No 372
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.62 E-value=0.0012 Score=46.24 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 373
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.61 E-value=0.0011 Score=47.71 Aligned_cols=63 Identities=8% Similarity=-0.003 Sum_probs=36.3
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcccchHHHHHHHHHhCCeEEEEec
Q 031083 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
..+.++++.|...... +......+.+.. +. .+++.||.|-.. . .-.+..+....+.|+..+..
T Consensus 220 ~P~~~lLvLDa~t~~~---~~~~~~~~~~~~--~~-t~iivTh~d~~a--~---gg~~l~i~~~~~~pi~~ig~ 282 (304)
T 1rj9_A 220 EPKEVWLVLDAVTGQN---GLEQAKKFHEAV--GL-TGVIVTKLDGTA--K---GGVLIPIVRTLKVPIKFVGV 282 (304)
T ss_dssp CCSEEEEEEETTBCTH---HHHHHHHHHHHH--CC-SEEEEECTTSSC--C---CTTHHHHHHHHCCCEEEEEC
T ss_pred CCCeEEEEEcHHHHHH---HHHHHHHHHHHc--CC-cEEEEECCcccc--c---ccHHHHHHHHHCCCeEEEeC
Confidence 4667888999776433 222222332221 22 567799998521 1 12346777888888777653
No 374
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.61 E-value=0.0012 Score=46.13 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.....|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999864
No 375
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.60 E-value=0.0012 Score=49.26 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
.+.++|++|||||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 578999999999999999987
No 376
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.59 E-value=0.0012 Score=49.81 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
-++|+|++|||||||++.+.+-
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999863
No 377
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.57 E-value=0.0012 Score=51.00 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-.++|+|++||||||+++.+.+--
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999998743
No 378
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.57 E-value=0.0012 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
-.+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999863
No 379
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.56 E-value=0.0014 Score=43.64 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
-|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 380
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.56 E-value=0.0015 Score=43.28 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 381
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.56 E-value=0.0024 Score=43.76 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031083 18 LLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~ 37 (166)
|+|+|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999998864
No 382
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.55 E-value=0.0014 Score=43.71 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 383
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.55 E-value=0.0014 Score=47.26 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.--++++|+.|+||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999875
No 384
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.54 E-value=0.0014 Score=46.42 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031083 18 LLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~ 38 (166)
++++|++|+|||+|++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999874
No 385
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.54 E-value=0.00056 Score=46.31 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999875
No 386
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.54 E-value=0.0017 Score=45.46 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHh
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFS 36 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~ 36 (166)
...|.|+|++||||||+.+.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999997
No 387
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.51 E-value=0.0017 Score=42.38 Aligned_cols=22 Identities=14% Similarity=0.375 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 388
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.51 E-value=0.0019 Score=45.40 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 389
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.50 E-value=0.00077 Score=49.63 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
-++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998854
No 390
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.50 E-value=0.0021 Score=43.70 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999865
No 391
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.49 E-value=0.0016 Score=44.42 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
-++++|++|+|||||++.+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999874
No 392
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.48 E-value=0.0016 Score=42.97 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998864
No 393
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0014 Score=49.98 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
-.++|+|+.|||||||++.+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 46899999999999999999874
No 394
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.43 E-value=0.0022 Score=41.72 Aligned_cols=22 Identities=41% Similarity=0.469 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999864
No 395
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.43 E-value=0.002 Score=42.48 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=18.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999864
No 396
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.42 E-value=0.0014 Score=42.93 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-.+++.|++|+|||++++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998875
No 397
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.42 E-value=0.0013 Score=43.38 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=15.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|++.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 398
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.41 E-value=0.0023 Score=44.64 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=21.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...+.|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998854
No 399
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.40 E-value=0.0026 Score=41.88 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...|++.|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 400
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.40 E-value=0.0013 Score=47.60 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
.--++|+|+.|||||||++.+.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 345789999999999999999965
No 401
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.40 E-value=0.0021 Score=43.95 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-.+++.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 402
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.40 E-value=0.002 Score=45.02 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..+++.|++|+|||+|++.+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4599999999999999999976
No 403
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.39 E-value=0.0026 Score=46.33 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=49.1
Q ss_pred EEEEeCCCccccccccccc------cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCccc
Q 031083 66 LQIWDTAGQERFRTITTAY------YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAV 139 (166)
Q Consensus 66 ~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~~~ 139 (166)
+.+.|++|..+........ .-..|-.+++.|..... .+......+.+.. + .-.++.||.|- ...
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~--~-it~iilTKlD~--~a~-- 283 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV--K-IDGIILTKLDA--DAR-- 283 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS--C-CCEEEEECGGG--CSC--
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc--C-CCEEEEeCcCC--ccc--
Confidence 5678999964322211111 11367889999976543 2333333333222 2 24778899995 111
Q ss_pred chHHHHHHHHHhCCeEEEEecccCCC
Q 031083 140 PTAKGQELADEYGIKFFETVSMFNNE 165 (166)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (166)
.-.+..+....+.|+..++ +|++
T Consensus 284 -~G~~l~~~~~~~~pi~~i~--~Ge~ 306 (328)
T 3e70_C 284 -GGAALSISYVIDAPILFVG--VGQG 306 (328)
T ss_dssp -CHHHHHHHHHHTCCEEEEE--CSSS
T ss_pred -hhHHHHHHHHHCCCEEEEe--CCCC
Confidence 2335677888899888777 4443
No 404
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.38 E-value=0.0024 Score=44.28 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
..+.|.+.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
No 405
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.37 E-value=0.0021 Score=47.25 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
++.++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999854
No 406
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.36 E-value=0.0032 Score=43.41 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...-|++.|++||||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 407
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.36 E-value=0.01 Score=39.60 Aligned_cols=85 Identities=14% Similarity=0.049 Sum_probs=56.4
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCcccch
Q 031083 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA--ADNVNKILVGNKADMDESKRAVPT 141 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piivv~~K~Dl~~~~~~~~~ 141 (166)
+.++++|+|+.. .......+..+|.++++...+... ..+..+++.+.... ..+.++.+|.|+.|... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~----~~~ 147 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA----TML 147 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE----EEE
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc----hHH
Confidence 457889999864 233445566799999999876544 66666666665432 33677899999999521 133
Q ss_pred HHHHHHHHHhCCeEE
Q 031083 142 AKGQELADEYGIKFF 156 (166)
Q Consensus 142 ~~~~~~~~~~~~~~~ 156 (166)
.++.++.++++.+++
T Consensus 148 ~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 148 NVLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHcCCcee
Confidence 456677777775544
No 408
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.34 E-value=0.0024 Score=42.77 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..+++.|++|+|||+|++.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 409
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.31 E-value=0.0023 Score=44.80 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
-.|+++|++|+||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 410
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.30 E-value=0.0023 Score=47.20 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
..--++++|+.|+||||+++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345689999999999999999875
No 411
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.30 E-value=0.0033 Score=42.22 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=22.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-.++.|.+.|.+||||||+.+.|..
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999865
No 412
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.29 E-value=0.0023 Score=49.15 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=20.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
..--++|+|+.|+|||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345689999999999999999865
No 413
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.28 E-value=0.0022 Score=45.75 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
-++|+|++|+|||||++.+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 414
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.27 E-value=0.0028 Score=40.31 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=22.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
....|++.|++|+|||++.+.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34579999999999999999997643
No 415
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.25 E-value=0.0027 Score=43.69 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999874
No 416
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.24 E-value=0.0027 Score=42.96 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 417
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.20 E-value=0.0038 Score=42.27 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...|++.|.+|+||||+.+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 418
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.19 E-value=0.0032 Score=48.98 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
=.++++|+.|+|||||++.+.+-
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 419
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.19 E-value=0.0036 Score=40.19 Aligned_cols=19 Identities=47% Similarity=0.635 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 031083 18 LLLIGDSGVGKSCLLLRFS 36 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~ 36 (166)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999975
No 420
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.19 E-value=0.0029 Score=45.14 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 421
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.18 E-value=0.0022 Score=45.08 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=21.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
.+...|+|.|..||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 44578999999999999999998753
No 422
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.15 E-value=0.004 Score=44.53 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=20.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.....+++.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999986654
No 423
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.14 E-value=0.0031 Score=47.79 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998854
No 424
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.13 E-value=0.0033 Score=42.79 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
-+++.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 425
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.13 E-value=0.0031 Score=48.31 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
-++++|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999875
No 426
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.12 E-value=0.0031 Score=46.81 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-.++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999985
No 427
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.12 E-value=0.0058 Score=45.97 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...-|+++|++||||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999875
No 428
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.11 E-value=0.0032 Score=48.95 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
-+.++|+.|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999999874
No 429
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.10 E-value=0.0035 Score=44.28 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
...+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999763
No 430
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.10 E-value=0.0033 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999998743
No 431
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.10 E-value=0.0035 Score=42.09 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999875
No 432
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.09 E-value=0.0033 Score=44.77 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
.-.+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999763
No 433
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.07 E-value=0.0044 Score=43.12 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999976
No 434
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.05 E-value=0.0038 Score=48.96 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 435
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.03 E-value=0.0049 Score=44.05 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
..-+++.|++|+|||+|.+.+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35677889999999999999876
No 436
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.0039 Score=49.17 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
.+.++|+.|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999874
No 437
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.00 E-value=0.0039 Score=44.73 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
.-.+++.|++|+|||+|++.+.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999999863
No 438
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.99 E-value=0.0032 Score=42.74 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
-.+++.|++|+|||+++..+.+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999888865
No 439
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.98 E-value=0.0044 Score=45.82 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 031083 18 LLLIGDSGVGKSCLLLRFS 36 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~ 36 (166)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5589999999999999986
No 440
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.97 E-value=0.0065 Score=42.75 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
.....+++.|++|+|||++++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44568999999999999999999763
No 441
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.96 E-value=0.0041 Score=44.93 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
-.+++.|++|+|||+|++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999876
No 442
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.92 E-value=0.007 Score=43.24 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
.-.+++.|++|+|||++++.+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 347999999999999999998763
No 443
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.91 E-value=0.0073 Score=43.70 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
....+++.|++|+|||+|++.+..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999999976
No 444
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.90 E-value=0.0044 Score=43.85 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999875
No 445
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.90 E-value=0.006 Score=42.14 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=20.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
-...++.++|++||||||+.+.|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 4568999999999999999998864
No 446
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.88 E-value=0.005 Score=48.57 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
=.++++|+.|+|||||++.+.+-
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 36899999999999999999874
No 447
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.87 E-value=0.0048 Score=47.99 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.+.++|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 448
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.86 E-value=0.0035 Score=49.33 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68899999999999999998743
No 449
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.84 E-value=0.0048 Score=45.24 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-.++|.|++|+|||+|++.+.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999876
No 450
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.84 E-value=0.0065 Score=41.89 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=21.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 12 YDYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
......|.++|++|+||||+.+.|..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999998864
No 451
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.84 E-value=0.0058 Score=47.52 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.+.|+|+.|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 452
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.83 E-value=0.0038 Score=49.13 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|++|+|||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999998743
No 453
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.80 E-value=0.0056 Score=48.30 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 454
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.78 E-value=0.0044 Score=45.19 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
++++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999876
No 455
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.78 E-value=0.0062 Score=41.13 Aligned_cols=24 Identities=42% Similarity=0.641 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
..|+|+|++|+|||+|...|...-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999998643
No 456
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.77 E-value=0.0033 Score=49.26 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (166)
.++++|+.|+|||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68899999999999999888743
No 457
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.76 E-value=0.006 Score=43.47 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 458
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.75 E-value=0.0085 Score=44.08 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=20.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...+|+++|++|+||||+.+.+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999987754
No 459
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.74 E-value=0.0064 Score=44.74 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
.++|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998863
No 460
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.0071 Score=45.74 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
..-.|++.||||+|||.|++.+.+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHH
Confidence 346799999999999999999987
No 461
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.72 E-value=0.0073 Score=40.45 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
.|.+.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 462
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.70 E-value=0.006 Score=44.42 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
++++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 463
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.70 E-value=0.0085 Score=43.51 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
..|+|+|++|+|||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 464
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.0057 Score=42.14 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=19.3
Q ss_pred eEEEE--cCCCCcHHHHHHHHhcCC
Q 031083 17 KLLLI--GDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 17 ~i~v~--G~~~~GKssli~~l~~~~ 39 (166)
||+|+ |+++.||++|++++++..
T Consensus 29 kilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 29 KILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred ceEEEecCcccccHHHHHHHHhccc
Confidence 45555 999999999999999875
No 465
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.69 E-value=0.0045 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998874
No 466
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.69 E-value=0.0062 Score=44.16 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
.-.|++.|++|+|||+|++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999999863
No 467
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.68 E-value=0.0076 Score=40.02 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031083 18 LLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~ 38 (166)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 468
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.68 E-value=0.007 Score=41.62 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=17.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
-+++.|++|+|||+|+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877753
No 469
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.0068 Score=47.84 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 031083 18 LLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~~ 39 (166)
++++|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999998854
No 470
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.63 E-value=0.0066 Score=43.57 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=47.2
Q ss_pred EEEEEEeCCCccccccc-c---ccccc--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 031083 64 IKLQIWDTAGQERFRTI-T---TAYYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (166)
Q Consensus 64 ~~~~i~D~~g~~~~~~~-~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl~~~~~ 137 (166)
..+.+.|++|....... . ...+. ..+.++++++++.. ...+..+...+. .-+ ..-+|.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~-~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVP-VNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSC-CCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCC-CCEEEEeCCCcccc--
Confidence 45888999996543221 1 11222 35678899987742 233333333222 112 24566799996321
Q ss_pred ccchHHHHHHHHHhCCeEEEEe
Q 031083 138 AVPTAKGQELADEYGIKFFETV 159 (166)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (166)
...+..++...++++..++
T Consensus 255 ---~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 ---LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp ---CHHHHHHHHTCSCCCSEEC
T ss_pred ---hhHHHHHHHHHCcCEEEEE
Confidence 2356777788888775554
No 471
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.0085 Score=45.24 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.--|++.||||+|||+|++.+.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999986
No 472
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.58 E-value=0.0075 Score=44.10 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-|+|.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999999875
No 473
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.58 E-value=0.0069 Score=44.48 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
--+.|+|++|+|||||++.+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999874
No 474
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.53 E-value=0.0086 Score=43.16 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 475
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.0094 Score=45.10 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=21.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
..--|++.||||+|||+|++.+.+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999999986
No 476
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.50 E-value=0.0098 Score=40.16 Aligned_cols=19 Identities=47% Similarity=0.635 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 031083 18 LLLIGDSGVGKSCLLLRFS 36 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~ 36 (166)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4788999999999999875
No 477
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.47 E-value=0.0083 Score=43.57 Aligned_cols=22 Identities=27% Similarity=0.676 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998763
No 478
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.46 E-value=0.0067 Score=44.48 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-.+++.|++|+|||++++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 479
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.45 E-value=0.01 Score=43.02 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
...+++.|++|+|||+|++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999653
No 480
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.44 E-value=0.0095 Score=43.12 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
-|+|+||+++|||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999753
No 481
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.42 E-value=0.0091 Score=43.15 Aligned_cols=23 Identities=43% Similarity=0.535 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHhcC
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (166)
--++|.|++|+|||+|++.+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 36899999999999999999764
No 482
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.42 E-value=0.0094 Score=42.99 Aligned_cols=85 Identities=21% Similarity=0.151 Sum_probs=47.8
Q ss_pred EEEEEeCCCcccccccc-----------cc-ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031083 65 KLQIWDTAGQERFRTIT-----------TA-YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132 (166)
Q Consensus 65 ~~~i~D~~g~~~~~~~~-----------~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~~K~Dl 132 (166)
.+.+.|+||........ .. .-...+.+++|.|..... +.+.. ...+.+.. + ..-+|.||.|-
T Consensus 188 dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D~ 261 (306)
T 1vma_A 188 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLDG 261 (306)
T ss_dssp SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGGG
T ss_pred CEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCCC
Confidence 47888999953222111 00 112478889999987432 22222 12222221 2 24567899995
Q ss_pred CCCCcccchHHHHHHHHHhCCeEEEEec
Q 031083 133 DESKRAVPTAKGQELADEYGIKFFETVS 160 (166)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (166)
... .-.+..+....++|+..+..
T Consensus 262 ~~~-----gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 262 TAK-----GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp CSC-----TTHHHHHHHHHCCCEEEEEC
T ss_pred ccc-----hHHHHHHHHHHCCCEEEEeC
Confidence 211 22378888899988877654
No 483
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.41 E-value=0.0093 Score=43.68 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 484
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.41 E-value=0.013 Score=43.00 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
....+++.|++|+|||++.+.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999998763
No 485
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.41 E-value=0.0095 Score=43.52 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-|+|+|++|+|||+|...|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 486
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.38 E-value=0.0036 Score=43.85 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999875
No 487
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.38 E-value=0.0089 Score=45.27 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
-.+++.|++|+|||+|++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 488
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.36 E-value=0.0092 Score=45.56 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-+++++|++|+|||++++.+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999865
No 489
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.35 E-value=0.011 Score=49.05 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhcCCC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDDSF 40 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~ 40 (166)
.++++|+.|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999997543
No 490
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.35 E-value=0.011 Score=41.45 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhcCC
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSDDS 39 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (166)
...|++.|++|+|||++++.+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3579999999999999999998643
No 491
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.01 Score=44.38 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-.|++.||||+|||.|.+.+.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHH
Confidence 45799999999999999999976
No 492
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.34 E-value=0.0051 Score=43.98 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=17.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHhc
Q 031083 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.+-|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998864
No 493
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.33 E-value=0.011 Score=43.55 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhcC
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (166)
....+++.|++|+|||++.+.+...
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998763
No 494
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.33 E-value=0.01 Score=44.05 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=21.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
...+++|+|++|+|||++++.+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 495
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.32 E-value=0.0095 Score=43.14 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhc
Q 031083 17 KLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (166)
-++|.|++|+|||+|++.+..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 496
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.31 E-value=0.0096 Score=45.86 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhcC
Q 031083 17 KLLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (166)
.++++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999863
No 497
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.30 E-value=0.01 Score=40.93 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=18.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHhc
Q 031083 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~ 37 (166)
.+..-|++.|++||||||+++.+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999865
No 498
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.30 E-value=0.0095 Score=46.36 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
-.++++|++|+|||+|++.+.+
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 499
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.30 E-value=0.016 Score=41.92 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHhc
Q 031083 16 IKLLLIGDSGVGKSCLLLRFSD 37 (166)
Q Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (166)
.-|+|+|+++||||+|...+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4578999999999999999975
No 500
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.29 E-value=0.037 Score=39.78 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031083 18 LLLIGDSGVGKSCLLLRFSDD 38 (166)
Q Consensus 18 i~v~G~~~~GKssli~~l~~~ 38 (166)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999999753
Done!