Citrus Sinensis ID: 031085

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MPYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPEPEDPLQGVFFWHILCPSSIDFLNPFMSLNNTQSYALAFGT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEEEEccccccccccccccEEEEEEEEEcEEEEEEEccccccccccccccccccccccccccccccccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHcccccccccccccccccccccccccccccEEEEEEEEcccEEEEEEEEccccEEccccccccEEEEEEEEEEEEEEEccccccccccccccccEEEEEEEccEEccccccEEEEcccccEEEEcc
Coil and Loop (DISEMBL)
MPYYIQRLYNTCraafspegpvtDEALERVRAMLDkikpsdvgleQEAQLvrnwpgpvlerngrhpslapikylhlhecdsfsigifcmppssmiplhnhpgmtvLSKLVYGslhvksydwldlpepedplqgvffwhilcpssidflnpfmslnntqSYALAFGT
Flexible Loop (DISEMBL)
MPYYIQRLYNtcraafspegpVTDEALERVRAMLDKIKpsdvgleqeaqlvrnwpgpvlerNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPEPEDPLQGVFFWHILCPSSIDFLNPFMSLNNTQSYALAFGT
Low Complexity Region (SEG)
MPYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPEPEDPLQGVFFWHILCPSSIDFLNPFMSLNNTQSYALAFGT
Disordered region (IsUnstruct)
**YYIQRLYNTCRAAFS************VRAML************EAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPEPEDPLQGVFFWHILCPSSIDFLNPFMSLNNTQSYAL****
Disordered Region (DISOPRED)
*PYYIQRLYNTCRAAFSP*GPV*DEALERVRAMLDKIKPSDVGLEQEAQL***************PSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLD****************LCPSSIDFLNPFMSLNNTQS***A***
Disordered Region (DISEMBL)
MPYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPEPEDPLQGVFFWHILCPSSIDFLNPFMSLNNTQSYALAFGT
Disordered Region (DISPRO)
*PYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLV**************PSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPEPEDPLQGVFFWHILCPSSIDFLNPFMSLNNTQSYALAFGT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPEPEDPLQGVFFWHILCPSSIDFLNPFMSLNNTQSYALAFGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	166	2.2.26 [Sep-21-2011]
Q556I2	218	Probable 2-aminoethanethi	no	no	0.524	0.399	0.346	3e-10
Q6PDY2	256	2-aminoethanethiol dioxyg	yes	no	0.680	0.441	0.3	4e-10
Q96SZ5	270	2-aminoethanethiol dioxyg	yes	no	0.602	0.370	0.300	2e-08

>sp|Q556I2|AEDO_DICDI Probable 2-aminoethanethiol dioxygenase OS=Dictyostelium discoideum GN=ado-1 PE=3 SV=2

 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 58/98 (59%), Gaps = 11/98 (11%)

Query: 26  ALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSIG 85
            L+ + ++  +IK  D+ +++   L +    P+   NG+      + Y  L E + F++ 
Sbjct: 24  TLDSLVSVFKEIKCKDLKIDKPLTLTK----PI--GNGKK-----VFYYPLVENEKFTLA 72

Query: 86  IFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLD 123
           IF  PP++ IP H+HP MTVLSK++YGS+   S+DW+D
Sbjct: 73  IFAFPPNTCIPTHDHPQMTVLSKVLYGSISCDSFDWID 110

Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 1EC: 9

>sp|Q6PDY2|AEDO_MOUSE 2-aminoethanethiol dioxygenase OS=Mus musculus GN=Ado PE=1 SV=2

 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 17/130 (13%)

Query: 1   MPYYIQRLYNTCRAAF-----SPEGPVTD--EALERVRAMLDKIKPSDVGLEQEAQLVRN 53
           M   IQR+       F       EGP     E L  ++++L +++  D+ +     L + 
Sbjct: 6   MASLIQRIARQACLTFRGSSTGSEGPAPGFPENLSLLKSLLTQVRAEDLNIAPRKALPQP 65

Query: 54  WPGPVLERNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGS 113
            P     RN     L P+ Y+H++E + FS+G+F +   + IPLH+HPGM  + K++YG+
Sbjct: 66  LP-----RN-----LPPVTYMHIYETEGFSLGVFLLKSGTCIPLHDHPGMHGMLKVLYGT 115

Query: 114 LHVKSYDWLD 123
           + +   D LD
Sbjct: 116 VRISCMDKLD 125

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 9

>sp|Q96SZ5|AEDO_HUMAN 2-aminoethanethiol dioxygenase OS=Homo sapiens GN=ADO PE=1 SV=2

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 13/113 (11%)

Query: 14  AAFSPEGPVTD---EALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAP 70
           AA  PE P+     E L +++++L +++  D+ +      ++             P+L P
Sbjct: 35  AASGPEAPMQPGFPENLSKLKSLLTQLRAEDLNIAPRKATLQPL----------PPNLPP 84

Query: 71  IKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLD 123
           + Y+H++E D FS+G+F +   + IPLH+HPGM  + K++YG++ +   D LD
Sbjct: 85  VTYMHIYETDGFSLGVFLLKSGTSIPLHDHPGMHGMLKVLYGTVRISCMDKLD 137

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
449463110	243	PREDICTED: probable 2-aminoethanethiol d	0.777	0.530	0.829	5e-59
356543090	239	PREDICTED: 2-aminoethanethiol dioxygenas	0.801	0.556	0.751	1e-54
359806677	239	uncharacterized protein LOC100805101 [Gl	0.801	0.556	0.744	2e-54
297820700	242	hypothetical protein ARALYDRAFT_486320 [	0.801	0.549	0.762	3e-54
15231104	242	uncharacterized protein [Arabidopsis tha	0.801	0.549	0.762	3e-54
297827967	241	hypothetical protein ARALYDRAFT_903639 [	0.801	0.551	0.755	5e-54
302143432	239	unnamed protein product [Vitis vinifera]	0.777	0.539	0.767	1e-53
359485291	240	PREDICTED: 2-aminoethanethiol dioxygenas	0.771	0.533	0.773	1e-53
18406030	241	uncharacterized protein [Arabidopsis tha	0.801	0.551	0.748	2e-53
145331101	242	uncharacterized protein [Arabidopsis tha	0.927	0.636	0.660	2e-53

>gi|449463110|ref|XP_004149277.1| PREDICTED: probable 2-aminoethanethiol dioxygenase-like [Cucumis sativus]

 Score =  231 bits (590), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 107/129 (82%), Positives = 118/129 (91%)

Query: 1   MPYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLE 60
           MPYYIQRLYNTC+AA SP GPV++EALE+VRAML+KIKPSDVGLEQEAQ+VRNW GPV E
Sbjct: 1   MPYYIQRLYNTCKAALSPNGPVSEEALEKVRAMLEKIKPSDVGLEQEAQVVRNWSGPVQE 60

Query: 61  RNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD 120
           RNGR  S  PIKYLHLHECDSFSIGIFCMPP+S+IP HNHPGMTVLSKL+YGSLHVKSYD
Sbjct: 61  RNGRRQSFPPIKYLHLHECDSFSIGIFCMPPTSIIPFHNHPGMTVLSKLIYGSLHVKSYD 120

Query: 121 WLDLPEPED 129
           W+DLP  +D
Sbjct: 121 WVDLPGLDD 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543090|ref|XP_003539996.1| PREDICTED: 2-aminoethanethiol dioxygenase-like [Glycine max]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 100/133 (75%), Positives = 116/133 (87%)

Query: 1   MPYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLE 60
           MPYYIQRLY  C A+FSP+GPV++EA+E+VR  L+KIKPSDVGLEQEAQ+V+NW G +LE
Sbjct: 1   MPYYIQRLYRLCNASFSPDGPVSEEAIEKVREKLEKIKPSDVGLEQEAQVVQNWSGSMLE 60

Query: 61  RNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD 120
           RNG H SL PIKYLHLHE DSFSIGIFCMPPSS+IPLHNHPGMTVLSKL+YGS++VKSYD
Sbjct: 61  RNGSHQSLPPIKYLHLHESDSFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSMYVKSYD 120

Query: 121 WLDLPEPEDPLQG 133
           W+D P   DP + 
Sbjct: 121 WIDAPGSTDPSEA 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806677|ref|NP_001241542.1| uncharacterized protein LOC100805101 [Glycine max] gi|255647592|gb|ACU24259.1| unknown [Glycine max]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 99/133 (74%), Positives = 114/133 (85%)

Query: 1   MPYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLE 60
           MPYYIQRLY  C A+FSP GP ++EA+E+VR  L++IKPSDVGLEQEAQ+VRNW G +LE
Sbjct: 1   MPYYIQRLYRLCNASFSPNGPASEEAIEKVREKLERIKPSDVGLEQEAQVVRNWSGSMLE 60

Query: 61  RNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD 120
            NG H SL PIKYLHLHECDSFSIGIFCMPPSS+IPLHNHPGMTVLSKL+YGS++VKSYD
Sbjct: 61  HNGSHQSLPPIKYLHLHECDSFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSMYVKSYD 120

Query: 121 WLDLPEPEDPLQG 133
           W+D P   DP + 
Sbjct: 121 WIDAPGSNDPSEA 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820700|ref|XP_002878233.1| hypothetical protein ARALYDRAFT_486320 [Arabidopsis lyrata subsp. lyrata] gi|297324071|gb|EFH54492.1| hypothetical protein ARALYDRAFT_486320 [Arabidopsis lyrata subsp. lyrata]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 103/135 (76%), Positives = 117/135 (86%), Gaps = 2/135 (1%)

Query: 1   MPYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLE 60
           MPY+IQRL+NTC+++ SP GPV++EAL++VR +L+KIKPSDVGLEQEAQLVRNWPGP  E
Sbjct: 1   MPYFIQRLFNTCKSSLSPNGPVSEEALDKVRNVLEKIKPSDVGLEQEAQLVRNWPGPGNE 60

Query: 61  RNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD 120
           RNG H SL  IKYL LHECDSFSIGIFCMPP S+IPLHNHPGMTVLSKLVYGS+HVKSYD
Sbjct: 61  RNGNHNSLPAIKYLQLHECDSFSIGIFCMPPGSVIPLHNHPGMTVLSKLVYGSMHVKSYD 120

Query: 121 WL--DLPEPEDPLQG 133
           W   D  E +DPLQ 
Sbjct: 121 WAEPDQSELDDPLQA 135

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231104|ref|NP_191426.1| uncharacterized protein [Arabidopsis thaliana] gi|145332889|ref|NP_001078310.1| uncharacterized protein [Arabidopsis thaliana] gi|334186089|ref|NP_001190128.1| uncharacterized protein [Arabidopsis thaliana] gi|7630062|emb|CAB88284.1| putative protein [Arabidopsis thaliana] gi|15293013|gb|AAK93617.1| unknown protein [Arabidopsis thaliana] gi|21536892|gb|AAM61224.1| unknown [Arabidopsis thaliana] gi|23296434|gb|AAN13116.1| unknown protein [Arabidopsis thaliana] gi|332646292|gb|AEE79813.1| uncharacterized protein [Arabidopsis thaliana] gi|332646293|gb|AEE79814.1| uncharacterized protein [Arabidopsis thaliana] gi|332646294|gb|AEE79815.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 103/135 (76%), Positives = 117/135 (86%), Gaps = 2/135 (1%)

Query: 1   MPYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLE 60
           MPY+IQRL+NTC+++ SP GPV++EAL++VR +L+KIKPSDVGLEQEAQLVRNWPGP  E
Sbjct: 1   MPYFIQRLFNTCKSSLSPNGPVSEEALDKVRNVLEKIKPSDVGLEQEAQLVRNWPGPGNE 60

Query: 61  RNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD 120
           RNG H SL  IKYL LHECDSFSIGIFCMPP S+IPLHNHPGMTVLSKLVYGS+HVKSYD
Sbjct: 61  RNGNHHSLPAIKYLQLHECDSFSIGIFCMPPGSIIPLHNHPGMTVLSKLVYGSMHVKSYD 120

Query: 121 WL--DLPEPEDPLQG 133
           W   D  E +DPLQ 
Sbjct: 121 WAEPDQSELDDPLQA 135

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827967|ref|XP_002881866.1| hypothetical protein ARALYDRAFT_903639 [Arabidopsis lyrata subsp. lyrata] gi|297327705|gb|EFH58125.1| hypothetical protein ARALYDRAFT_903639 [Arabidopsis lyrata subsp. lyrata]

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 102/135 (75%), Positives = 116/135 (85%), Gaps = 2/135 (1%)

Query: 1   MPYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLE 60
           MPY+ QRLYNTC+A+FS + P++DEALE+VR +L+KIKPSDVG+EQEAQL R   GP+ E
Sbjct: 1   MPYFAQRLYNTCKASFSSDAPISDEALEKVRNVLEKIKPSDVGIEQEAQLARTRSGPLNE 60

Query: 61  RNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD 120
           RNG H S   IKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGS+HVKSYD
Sbjct: 61  RNGSHQSPPAIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSMHVKSYD 120

Query: 121 WL--DLPEPEDPLQG 133
           WL  +L EP+DP Q 
Sbjct: 121 WLEPELTEPDDPSQA 135

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143432|emb|CBI21993.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 99/129 (76%), Positives = 112/129 (86%)

Query: 5   IQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGR 64
           IQRLYN C+++FSP GPV++EALE+VR MLDKI+PSDVGLEQEAQ  R W GP+ + NG 
Sbjct: 5   IQRLYNACKSSFSPNGPVSEEALEKVRTMLDKIRPSDVGLEQEAQCARVWSGPMHQCNGS 64

Query: 65  HPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDL 124
           HPSL PIKYLHLHECDSFSIG+FCMPPSS+IPLHNHPGMTVLSKL+YGSL+VKSYDWLD 
Sbjct: 65  HPSLPPIKYLHLHECDSFSIGVFCMPPSSIIPLHNHPGMTVLSKLLYGSLYVKSYDWLDF 124

Query: 125 PEPEDPLQG 133
           P   DP Q 
Sbjct: 125 PAAADPSQA 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485291|ref|XP_002280878.2| PREDICTED: 2-aminoethanethiol dioxygenase [Vitis vinifera]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 99/128 (77%), Positives = 112/128 (87%)

Query: 5   IQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGR 64
           IQRLYN C+++FSP GPV++EALE+VR MLDKI+PSDVGLEQEAQ  R W GP+ + NG 
Sbjct: 5   IQRLYNACKSSFSPNGPVSEEALEKVRTMLDKIRPSDVGLEQEAQCARVWSGPMHQCNGS 64

Query: 65  HPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDL 124
           HPSL PIKYLHLHECDSFSIG+FCMPPSS+IPLHNHPGMTVLSKL+YGSL+VKSYDWLD 
Sbjct: 65  HPSLPPIKYLHLHECDSFSIGVFCMPPSSIIPLHNHPGMTVLSKLLYGSLYVKSYDWLDF 124

Query: 125 PEPEDPLQ 132
           P   DP Q
Sbjct: 125 PAAADPSQ 132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406030|ref|NP_565980.1| uncharacterized protein [Arabidopsis thaliana] gi|20197959|gb|AAD21739.2| expressed protein [Arabidopsis thaliana] gi|20198080|gb|AAM15389.1| expressed protein [Arabidopsis thaliana] gi|88196755|gb|ABD43020.1| At2g42670 [Arabidopsis thaliana] gi|330255059|gb|AEC10153.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 101/135 (74%), Positives = 118/135 (87%), Gaps = 2/135 (1%)

Query: 1   MPYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLE 60
           MPY+ QRLYNTC+A+FS +GP+T++ALE+VR +L+KIKPSDVG+EQ+AQL R+  GP+ E
Sbjct: 1   MPYFAQRLYNTCKASFSSDGPITEDALEKVRNVLEKIKPSDVGIEQDAQLARSRSGPLNE 60

Query: 61  RNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD 120
           RNG + S   IKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGS+HVKSYD
Sbjct: 61  RNGSNQSPPAIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSMHVKSYD 120

Query: 121 WLD--LPEPEDPLQG 133
           WL+  L EPEDP Q 
Sbjct: 121 WLEPQLTEPEDPSQA 135

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145331101|ref|NP_001078042.1| uncharacterized protein [Arabidopsis thaliana] gi|110742706|dbj|BAE99264.1| hypothetical protein [Arabidopsis thaliana] gi|330255060|gb|AEC10154.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/156 (66%), Positives = 126/156 (80%), Gaps = 2/156 (1%)

Query: 1   MPYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLE 60
           MPY+ QRLYNTC+A+FS +GP+T++ALE+VR +L+KIKPSDVG+EQ+AQL R+  GP+ E
Sbjct: 1   MPYFAQRLYNTCKASFSSDGPITEDALEKVRNVLEKIKPSDVGIEQDAQLARSRSGPLNE 60

Query: 61  RNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD 120
           RNG + S   IKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGS+HVKSYD
Sbjct: 61  RNGSNQSPPAIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSMHVKSYD 120

Query: 121 WLD--LPEPEDPLQGVFFWHILCPSSIDFLNPFMSL 154
           WL+  L EPEDP Q      ++  + +   +P  +L
Sbjct: 121 WLEPQLTEPEDPSQEARPAKLVKDTEMTAQSPVTTL 156

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
TAIR|locus:2098984	242	AT3G58670 [Arabidopsis thalian	0.795	0.545	0.768	2.6e-54
TAIR|locus:2041524	242	AT2G42670 [Arabidopsis thalian	0.795	0.545	0.753	3.8e-53
TAIR|locus:2150866	293	AT5G15120 [Arabidopsis thalian	0.692	0.392	0.512	2.3e-30
TAIR|locus:2178032	276	AT5G39890 [Arabidopsis thalian	0.686	0.413	0.464	4e-26
TAIR|locus:2014169	282	AT1G18490 "AT1G18490" [Arabido	0.728	0.429	0.443	9.7e-25
UNIPROTKB|G3MZK0	270	ADO "Uncharacterized protein"	0.825	0.507	0.285	2.1e-13
UNIPROTKB|F1RFB8	270	ADO "2-aminoethanethiol (Cyste	0.644	0.396	0.3	2.1e-13
ZFIN|ZDB-GENE-040426-2267	254	adob "2-aminoethanethiol (cyst	0.692	0.452	0.330	3.4e-13
UNIPROTKB|Q96SZ5	270	ADO "2-aminoethanethiol dioxyg	0.602	0.370	0.309	3.6e-13
UNIPROTKB|E2RLA7	270	ADO "Uncharacterized protein"	0.644	0.396	0.283	1.9e-12

TAIR|locus:2098984 AT3G58670 [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 103/134 (76%), Positives = 117/134 (87%)

Query:     1 MPYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLE 60
             MPY+IQRL+NTC+++ SP GPV++EAL++VR +L+KIKPSDVGLEQEAQLVRNWPGP  E
Sbjct:     1 MPYFIQRLFNTCKSSLSPNGPVSEEALDKVRNVLEKIKPSDVGLEQEAQLVRNWPGPGNE 60

Query:    61 RNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD 120
             RNG H SL  IKYL LHECDSFSIGIFCMPP S+IPLHNHPGMTVLSKLVYGS+HVKSYD
Sbjct:    61 RNGNHHSLPAIKYLQLHECDSFSIGIFCMPPGSIIPLHNHPGMTVLSKLVYGSMHVKSYD 120

Query:   121 WL--DLPEPEDPLQ 132
             W   D  E +DPLQ
Sbjct:   121 WAEPDQSELDDPLQ 134

GO:0005634 "nucleus" evidence=ISM

GO:0047800 "cysteamine dioxygenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2041524 AT2G42670 [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 101/134 (75%), Positives = 118/134 (88%)

Query:     1 MPYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLE 60
             MPY+ QRLYNTC+A+FS +GP+T++ALE+VR +L+KIKPSDVG+EQ+AQL R+  GP+ E
Sbjct:     1 MPYFAQRLYNTCKASFSSDGPITEDALEKVRNVLEKIKPSDVGIEQDAQLARSRSGPLNE 60

Query:    61 RNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD 120
             RNG + S   IKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGS+HVKSYD
Sbjct:    61 RNGSNQSPPAIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSMHVKSYD 120

Query:   121 WLD--LPEPEDPLQ 132
             WL+  L EPEDP Q
Sbjct:   121 WLEPQLTEPEDPSQ 134

GO:0005634 "nucleus" evidence=ISM

GO:0047800 "cysteamine dioxygenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2150866 AT5G15120 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 64/125 (51%), Positives = 87/125 (69%)

Query:     5 IQRLYNTCRAAFSPEGP---VTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLER 61
             ++RL+NTC+  FS  GP    +++ ++++R +LD +KP DVGL       R  P   +E 
Sbjct:    58 VRRLFNTCKEVFSNGGPGVIPSEDKIQQLREILDDMKPEDVGLTPTMPYFR--PNSGVEA 115

Query:    62 NGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDW 121
                  S  PI YLHLH+CD FSIGIFC+PPS +IPLHNHPGMTV SKL++G++H+KSYDW
Sbjct:   116 R----SSPPITYLHLHQCDQFSIGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDW 171

Query:   122 L-DLP 125
             + D P
Sbjct:   172 VVDAP 176

GO:0005634 "nucleus" evidence=ISM

GO:0047800 "cysteamine dioxygenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009061 "anaerobic respiration" evidence=IEP;IMP

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2178032 AT5G39890 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 59/127 (46%), Positives = 85/127 (66%)

Query:     5 IQRLYNTCRAAFSP--EGPV-TDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLER 61
             +Q+L++TC+  F+    G V + E +E +RA+LD+IKP DVG+  +    R+        
Sbjct:    47 VQKLFDTCKKVFADGKSGTVPSQENIEMLRAVLDEIKPEDVGVNPKMSYFRSTV------ 100

Query:    62 NGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDW 121
              GR P    + YLH++ C  FSI IFC+PPS +IPLHNHP MTV SKL++G++H+KSYDW
Sbjct:   101 TGRSPL---VTYLHIYACHRFSICIFCLPPSGVIPLHNHPEMTVFSKLLFGTMHIKSYDW 157

Query:   122 L-DLPEP 127
             + D P+P
Sbjct:   158 VPDSPQP 164

GO:0005634 "nucleus" evidence=ISM

GO:0047800 "cysteamine dioxygenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2014169 AT1G18490 "AT1G18490" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 55/124 (44%), Positives = 84/124 (67%)

Query:     5 IQRLYNTCRAAFSPEGPV-TDEALERVRAMLDKIKPSDVGLEQEAQLV-RNWPGPVLERN 62
             +Q LY+ C+  F+ + P     A++++ ++LD + P+DVGLE+ +Q   R +    + R 
Sbjct:    35 VQELYDLCKETFTGKAPSPASMAIQKLCSVLDSVSPADVGLEEVSQDDDRGYGVSGVSRF 94

Query:    63 GRHPSLA-PIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDW 121
              R    A PI +L +HECD+F++ IFC P SS+IPLH+HP M V SK++YGSLHVK+YDW
Sbjct:    95 NRVGRWAQPITFLDIHECDTFTMCIFCFPTSSVIPLHDHPEMAVFSKILYGSLHVKAYDW 154

Query:   122 LDLP 125
             ++ P
Sbjct:   155 VEPP 158

GO:0005575 "cellular_component" evidence=ND

GO:0047800 "cysteamine dioxygenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|G3MZK0 ADO "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 44/154 (28%), Positives = 78/154 (50%)

Query:    18 PEGPVTD---EALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYL 74
             PE P+     E L +++++L +++  D+ +      V+    P+       P+L P+ Y+
Sbjct:    39 PEAPIPQGFPENLSKLKSLLTQVRAEDLNISPRKATVQ----PL------RPNLPPVTYM 88

Query:    75 HLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDL---PEPEDPL 131
             H+ E D FS+G+F +   + IPLH+HPGM  + K++YG++ +   D L++     P  P 
Sbjct:    89 HICETDGFSLGVFLLKSGTSIPLHDHPGMHGILKVLYGTVRISCMDKLEVGSGQRPRAPP 148

Query:   132 QGVFFWHILCPSSIDFLNPFMSLNNTQSYALAFG 165
                 F   L P  +D + P + L +   Y  A G
Sbjct:   149 PEQQFEPPLQPRELDAVQPGV-LRSRAEYTEASG 181

GO:0005739 "mitochondrion" evidence=IEA

GO:0047800 "cysteamine dioxygenase activity" evidence=IEA

UNIPROTKB|F1RFB8 ADO "2-aminoethanethiol (Cysteamine) dioxygenase" [Sus scrofa (taxid:9823)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 36/120 (30%), Positives = 66/120 (55%)

Query:    14 AAFSPEGPVTD---EALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAP 70
             AA  PE PV     E L +++++L +++  D+ +      ++  P          P+L P
Sbjct:    35 AAPGPEAPVPQGFPENLSKLKSLLTQVRAEDLNISPRKATLQPLP----------PNLPP 84

Query:    71 IKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPEPEDP 130
             + Y+H++E D FS+G+F +   + IPLH+HPGM  + K++YG++ +   D L+    + P
Sbjct:    85 VTYMHIYETDGFSLGVFLLKSGTSIPLHDHPGMHGMLKVLYGTVRISCMDKLEAGSGQRP 144

GO:0005739 "mitochondrion" evidence=IEA

GO:0047800 "cysteamine dioxygenase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-2267 adob "2-aminoethanethiol (cysteamine) dioxygenase b" [Danio rerio (taxid:7955)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 42/127 (33%), Positives = 70/127 (55%)

Query:    25 EALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAP-IKYLHLHECDSFS 83
             E   +++++L +++ +D  L+  A+   + P P       H  +AP + Y+H+ E DSFS
Sbjct:    36 ENQSKLKSLLAEVRAAD--LKIAARTPESAPVP-------HQRIAPPVTYMHICETDSFS 86

Query:    84 IGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPEPEDPLQGVFFWHILCPS 143
             +G+F +   + IPLH+HPGM  + K++YG + +  +D LD  +P D   GV F   L P 
Sbjct:    87 MGVFLLKTGASIPLHDHPGMYGMLKVIYGKVRISCFDRLD--KPRDGASGVQFNPPLMPF 144

Query:   144 SIDFLNP 150
                 L P
Sbjct:   145 QRGSLRP 151

GO:0047800 "cysteamine dioxygenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

UNIPROTKB|Q96SZ5 ADO "2-aminoethanethiol dioxygenase" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 3.6e-13, P = 3.6e-13
 Identities = 35/113 (30%), Positives = 64/113 (56%)

Query:    14 AAFSPEGPVTD---EALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAP 70
             AA  PE P+     E L +++++L +++  D+ +      ++  P          P+L P
Sbjct:    35 AASGPEAPMQPGFPENLSKLKSLLTQLRAEDLNIAPRKATLQPLP----------PNLPP 84

Query:    71 IKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLD 123
             + Y+H++E D FS+G+F +   + IPLH+HPGM  + K++YG++ +   D LD
Sbjct:    85 VTYMHIYETDGFSLGVFLLKSGTSIPLHDHPGMHGMLKVLYGTVRISCMDKLD 137

GO:0046872 "metal ion binding" evidence=IEA

GO:0047800 "cysteamine dioxygenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2RLA7 ADO "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 167 (63.8 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 34/120 (28%), Positives = 65/120 (54%)

Query:    14 AAFSPEGPVTD---EALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAP 70
             +A  PE P+     E L +++ +L +++  D+ +      ++  P          P+L P
Sbjct:    35 SASGPEAPMPQGFPENLSKLKNLLTQVRAEDLNIAPRKATLQPLP----------PNLPP 84

Query:    71 IKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPEPEDP 130
             + Y+H++E D FS+G+F +   + IPLH+HPGM  + K++YG++ +   D L+    + P
Sbjct:    85 VTYMHIYETDGFSLGVFLLKSGTSIPLHDHPGMHGMLKVLYGTVRISCMDKLEAGGGQQP 144

GO:0047800 "cysteamine dioxygenase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.13.11	LOW CONFIDENCE prediction!
3rd Layer	1.13.11.19	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	166
pfam07847	194	pfam07847, DUF1637, Protein of unknown function (D	2e-42

>gnl|CDD|219605 pfam07847, DUF1637, Protein of unknown function (DUF1637)

 Score =  139 bits (352), Expect = 2e-42
 Identities = 50/101 (49%), Positives = 67/101 (66%), Gaps = 7/101 (6%)

Query: 33  MLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSIGIFCMPPS 92
           +LD++ P DVGL+ E    R              S  P+ YLH++ECD FS+G+FC+PP 
Sbjct: 1   LLDELTPEDVGLDPELFYFRAAAKSG-------KSRPPVTYLHIYECDDFSMGVFCLPPG 53

Query: 93  SMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPEPEDPLQG 133
           ++IPLH+HPGMTVLSK++YGSLHVKSYDW+D    +    G
Sbjct: 54  AVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDGEPLDTTRGG 94

This family contains many eukaryotic hypothetical proteins. The region featured in this family is approximately 120 residues long. According to InterPro annotation, some members of this family may belong to the cupin superfamily. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
KOG4281	236	consensus Uncharacterized conserved protein [Funct	100.0
PF07847	200	DUF1637: Protein of unknown function (DUF1637); In	100.0
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	98.35
COG1917	131	Uncharacterized conserved protein, contains double	96.19
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	94.45
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	94.03
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	93.96
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	93.45
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	92.92
smart00835	146	Cupin_1 Cupin. This family represents the conserve	92.55
PRK13290	125	ectC L-ectoine synthase; Reviewed	87.88
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	85.95
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	84.86
KOG4064	196	consensus Cysteine dioxygenase CDO1 [Amino acid tr	84.83
COG5553	191	Predicted metal-dependent enzyme of the double-str	80.37
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	80.07

>KOG4281 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=9.4e-49  Score=328.44  Aligned_cols=137  Identities=57%  Similarity=1.046  Sum_probs=119.3

Q ss_pred             CChHHHHHHHHHhhhcCCCCC-CCHHHHHHHHHHhccCCccCCCCchhhhcccCCCCCCccCCCCCCCCCCeeEEeeecC
Q 031085            1 MPYYIQRLYNTCRAAFSPEGP-VTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHEC   79 (166)
Q Consensus         1 m~~~IQrL~~~c~~tFs~~~~-ps~~~l~kL~~lLd~Itp~DvgLd~~~~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e~   79 (166)
                      ||. +||||+.||++|+.+++ ++++++++||++||+|+++||||+++++.+++  +..     ..+..+||+|+|||||
T Consensus         1 ~p~-vq~l~ntck~~fs~~~pg~~~~nlqkLr~vLd~lkp~Dvgl~~~~~~~~~--~~~-----~~rn~ppitYlhi~Ec   72 (236)
T KOG4281|consen    1 SPF-VQRLFNTCKEVFSTGGPGPFEENLQKLRSVLDELKPEDVGLEPEMQYFRP--SGV-----SERNLPPITYLHIHEC   72 (236)
T ss_pred             Chh-hHHHHHHHHHHhcCCCCCccHHHHHHHHHHHhhCCHhhcCcChhhhhccC--CCC-----CcCCCCCceEEEEEec
Confidence            565 99999999999998776 89999999999999999999999999988764  111     1233689999999999


Q ss_pred             CceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEeeccCCCC--CCCCCc-ceE-------EEecCCcccc
Q 031085           80 DSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPE--PEDPLQ-GVF-------FWHILCPSSI  145 (166)
Q Consensus        80 ~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~v~~~~--~~~~~~-~~~-------~~~~~~~~~~  145 (166)
                      +.|||||||||+|++||||||||||||||+|||+|||+||||++++.  ..++.| +|.       .+|++||.++
T Consensus        73 D~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyDw~ePd~~~~~dp~q~~r~akl~~d~~~T~~s~~~~  148 (236)
T KOG4281|consen   73 DRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYDWVEPDEPQTEDPHQPVRPAKLVSDKEFTAASPAST  148 (236)
T ss_pred             CceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeeccccCCCCcccCCCCcceeeeeEeccceecCCCCCcE
Confidence            99999999999999999999999999999999999999999998764  335533 444       8999999886

>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine

Probab=100.00  E-value=1.2e-36  Score=251.53  Aligned_cols=108  Identities=51%  Similarity=0.907  Sum_probs=89.9

Q ss_pred             HhccCCccCCCCchhhhcccCCCCCCccCCCCCCCCCCeeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhcc
Q 031085           33 MLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYG  112 (166)
Q Consensus        33 lLd~Itp~DvgLd~~~~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~G  112 (166)
                      |||+||++||||+++...++.      .........++|+|++||||++||||||+||+|++||||||||||||||||||
T Consensus         1 lld~i~~~Dvgl~~~~~~~~~------~~~~~~~~~~~i~y~~iyE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~G   74 (200)
T PF07847_consen    1 LLDKITPEDVGLDPSLQFFRA------PSNRSSPSSPPITYMHIYEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYG   74 (200)
T ss_pred             CcCcccHHHcCCCcccccccc------cccccCCCCCCeEEEEEEECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEee
Confidence            689999999999999976642      11223456899999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeeccCCCCCCC-----CCcceE----EEecCCccccc
Q 031085          113 SLHVKSYDWLDLPEPED-----PLQGVF----FWHILCPSSID  146 (166)
Q Consensus       113 s~~v~Syd~v~~~~~~~-----~~~~~~----~~~~~~~~~~~  146 (166)
                      ++||+||||++......     ...+++    +++++|.++|=
T Consensus        75 s~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL  117 (200)
T PF07847_consen   75 SLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVL  117 (200)
T ss_pred             eEEEEEccccccccccccccccceeeEEEecceecCCCCCeEE
Confidence            99999999999544322     222444    59999998873

Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=98.35  E-value=1.3e-06  Score=70.36  Aligned_cols=100  Identities=20%  Similarity=0.330  Sum_probs=69.1

Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHHHHHHhccCCccCCCCchhhhcccCCCCCCccCCCCCCCCCCeeEEeeecCCceEE
Q 031085            5 IQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSI   84 (166)
Q Consensus         5 IQrL~~~c~~tFs~~~~ps~~~l~kL~~lLd~Itp~DvgLd~~~~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e~~~fs~   84 (166)
                      ++.++++-+..|..    ...++++++.++..+....   ++-.. +..+            ....-++--||.++.|++
T Consensus        18 ~~~li~~L~~~~~~----~~~~v~~i~~l~~~~~~~~---~~w~~-~~~~------------d~~~Y~r~ll~~~~~~el   77 (175)
T PF05995_consen   18 LADLIADLRQIFDQ----EPDDVEEIAALLRSLASDP---SDWLK-YARF------------DPDRYTRNLLYRDERFEL   77 (175)
T ss_dssp             HHHHHHHHHHHTSS----SSHHHHHHHHHHHHSCSSC---HHHGG-GC--------------SSSSSEEEEEEGGCT-EE
T ss_pred             HHHHHHHHHHhhcc----cccCHHHHHHHHHHHhcCh---HHHHH-hhcc------------cCCCCeEEEEecCCCeEE
Confidence            56666777777753    2467888888888776532   11111 1111            112356777899999999


Q ss_pred             EEEEcCCCCcccCCCCCCChhhhhhhccceEEEEeeccCC
Q 031085           85 GIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDL  124 (166)
Q Consensus        85 ~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~v~~  124 (166)
                      -++|-+||..-|.|||.|..++.+||.|.++-.-|.|.+.
T Consensus        78 ~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~  117 (175)
T PF05995_consen   78 WLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDD  117 (175)
T ss_dssp             EEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTS
T ss_pred             EEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCc
Confidence            9999999999999999999999999999999999999876

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=96.19  E-value=0.0047  Score=46.33  Aligned_cols=41  Identities=24%  Similarity=0.371  Sum_probs=37.1

Q ss_pred             cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           78 ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        78 e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      +..++.+..|.+.+|+++|-|.||......-||.|.+.+.-
T Consensus        39 ~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~   79 (131)
T COG1917          39 EGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL   79 (131)
T ss_pred             CCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEe
Confidence            57889999999999999999999988888899999998754

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=94.45  E-value=0.037  Score=49.70  Aligned_cols=42  Identities=19%  Similarity=0.393  Sum_probs=38.4

Q ss_pred             CCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031085           79 CDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD  120 (166)
Q Consensus        79 ~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd  120 (166)
                      ...++++.+.|+||+..++|.||+-.=+.-||.|++++..+|
T Consensus       242 ~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d  283 (367)
T TIGR03404       242 SKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFA  283 (367)
T ss_pred             cceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEe
Confidence            356999999999999999999999999999999999998764

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=94.03  E-value=0.011  Score=38.99  Aligned_cols=33  Identities=30%  Similarity=0.618  Sum_probs=30.7

Q ss_pred             EEEEcCCCCcccCCCCCCChhhhhhhccceEEE
Q 031085           85 GIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVK  117 (166)
Q Consensus        85 ~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~  117 (166)
                      |+.-++||+.+|.|-|++...+.-||.|++.+.
T Consensus         1 ~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~   33 (71)
T PF07883_consen    1 GLVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT   33 (71)
T ss_dssp             EEEEEETTEEEEEEEESSEEEEEEEEESEEEEE
T ss_pred             CEEEECCCCCCCCEECCCCCEEEEEEECCEEEE
Confidence            567899999999999999999999999999987

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=93.96  E-value=0.069  Score=44.53  Aligned_cols=58  Identities=16%  Similarity=0.272  Sum_probs=45.5

Q ss_pred             CCeeEEeeec-CCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEE-----EEeeccCCCCC
Q 031085           69 APIKYLHLHE-CDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHV-----KSYDWLDLPEP  127 (166)
Q Consensus        69 ~pi~y~~i~e-~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v-----~Syd~v~~~~~  127 (166)
                      +.+..+.++. ++.-++.+..+++|+.+|.|.|.|.- +.-||.|+..-     ..-||+..+..
T Consensus       113 ~gv~~~~L~~~~~~~~v~Ll~i~pG~~~p~H~H~G~E-~tlVLeG~f~de~g~y~~Gd~i~~p~~  176 (215)
T TIGR02451       113 GRVSRVTLPIDDGNARVRLLYIEAGQSIPQHTHKGFE-LTLVLHGAFSDETGVYGVGDFEEADGS  176 (215)
T ss_pred             CCeEEEeccCCCCCcEEEEEEECCCCccCCCcCCCcE-EEEEEEEEEEcCCCccCCCeEEECCCC
Confidence            4588888887 55779999999999999999999988 66789998652     23467665543

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=93.45  E-value=0.12  Score=47.47  Aligned_cols=79  Identities=18%  Similarity=0.371  Sum_probs=56.8

Q ss_pred             CCHHHHHHHHHHhccCCccCCCCchhh---hcccCCCCCCccCCCCCCCCCCeeEEeeecCCceEEEEEEcCCCCcccCC
Q 031085           22 VTDEALERVRAMLDKIKPSDVGLEQEA---QLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLH   98 (166)
Q Consensus        22 ps~~~l~kL~~lLd~Itp~DvgLd~~~---~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e~~~fs~~iF~lp~g~~IPLH   98 (166)
                      ...+..|++|.+.++++.+  |.+.-.   ...++|                -+|..+++.+.|.+..+.++||+.+++|
T Consensus       331 ~~~~~~q~vk~~v~~l~~~--~~~~~~~~~~~~~pW----------------G~~~~~~~~~~~~~~~~~i~PG~~~~~h  392 (468)
T TIGR01479       331 AHKDRVQDVKKIVEQLKAD--GRTETEQHREVYRPW----------------GKYDSIDQGDRYQVKRITVKPGEKLSLQ  392 (468)
T ss_pred             echHHhhhHHHHHHHHHhc--CchhhhcCceEECCC----------------CceEEEecCCCEEEEEEEECCCCccCcc
Confidence            3456778888888888633  222222   123555                2367788999999999999999999988


Q ss_pred             CCCCChhhhhhhccceEEEE
Q 031085           99 NHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        99 DHPgMtv~sKvL~Gs~~v~S  118 (166)
                      -|++=.-..-||.|++.+.-
T Consensus       393 ~H~~~~E~~~Vl~G~~~v~~  412 (468)
T TIGR01479       393 MHHHRAEHWIVVSGTARVTI  412 (468)
T ss_pred             ccCCCceEEEEEeeEEEEEE
Confidence            88755544479999999873

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=92.92  E-value=0.068  Score=38.16  Aligned_cols=50  Identities=20%  Similarity=0.341  Sum_probs=39.0

Q ss_pred             CCCeeEEeeecCC---ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           68 LAPIKYLHLHECD---SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        68 ~~pi~y~~i~e~~---~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      .+.|....+++++   ...+.+--+.||+.+|.|.|++--- .=||.|++....
T Consensus         7 ~~Gv~~~~L~~~~~~~g~~~~L~r~~pG~~~p~H~H~g~ee-~~VLeG~~~d~~   59 (91)
T PF12973_consen    7 RPGVSVKPLHRDEGETGERVSLLRLEPGASLPRHRHPGGEE-ILVLEGELSDGD   59 (91)
T ss_dssp             STTEEEEEEEECSSSTTEEEEEEEE-TTEEEEEEEESS-EE-EEEEECEEEETT
T ss_pred             CCCEEEEEeccCCCcccCEEEEEEECCCCCcCccCCCCcEE-EEEEEEEEEECC
Confidence            4679999999765   4688899999999999999998544 368899887543

>smart00835 Cupin_1 Cupin

Probab=92.55  E-value=0.11  Score=39.91  Aligned_cols=45  Identities=27%  Similarity=0.272  Sum_probs=39.3

Q ss_pred             eeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEe
Q 031085           75 HLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSY  119 (166)
Q Consensus        75 ~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Sy  119 (166)
                      ..+++..+++....+++|+..+.|-||+-.-+.-||.|.+.+..-
T Consensus        23 ~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~   67 (146)
T smart00835       23 PALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVV   67 (146)
T ss_pred             cccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEE
Confidence            557788999999999999999999999777788899999988643

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=87.88  E-value=0.5  Score=36.48  Aligned_cols=47  Identities=17%  Similarity=0.076  Sum_probs=36.5

Q ss_pred             eeEEeeecCC--ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           71 IKYLHLHECD--SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        71 i~y~~i~e~~--~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      ++.--+.+.+  .|++-.+.|+||+.+|.|-|... -+.-||.|++.+..
T Consensus        22 ~~krll~~~~~~~~~~~~~~l~pG~~~~~h~h~~~-E~~yVL~G~~~~~~   70 (125)
T PRK13290         22 TSRRLLLKDDGMGFSFHETTIYAGTETHLHYKNHL-EAVYCIEGEGEVED   70 (125)
T ss_pred             eEEEEEEecCCCCEEEEEEEECCCCcccceeCCCE-EEEEEEeCEEEEEE
Confidence            4444455444  56666689999999999999876 49999999999884

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=85.95  E-value=1.9  Score=34.40  Aligned_cols=80  Identities=16%  Similarity=0.292  Sum_probs=59.9

Q ss_pred             CHHHHHHHHHHhccCCccCCCCch-hhhcccCCCCCCccCCCCCCCCCCeeEEeeecCCceEEEEEEcCCCCcccCCCCC
Q 031085           23 TDEALERVRAMLDKIKPSDVGLEQ-EAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHP  101 (166)
Q Consensus        23 s~~~l~kL~~lLd~Itp~DvgLd~-~~~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e~~~fs~~iF~lp~g~~IPLHDHP  101 (166)
                      ..+..+++|.++++++.+.-.... .....++|                -+|--|.+.+.|.+-...+.||..++||-|.
T Consensus        19 ~k~~~q~vK~~v~~lk~~~~~E~~~~~~~~rpW----------------G~~~~l~~~~~~~vkri~V~pG~~lSlq~H~   82 (151)
T PF01050_consen   19 DKDRSQDVKEVVEQLKQKGRYEAKEHRRVYRPW----------------GSYEVLDEGEGYKVKRITVNPGKRLSLQYHH   82 (151)
T ss_pred             CcHHhhhhHHHHHhhhcccccccccceeEecCC----------------cEEEEEEccCCEEEEEEEEcCCCccceeeec
Confidence            456778888888887655322211 11123445                2477777899999999999999999999999


Q ss_pred             CChhhhhhhccceEEEE
Q 031085          102 GMTVLSKLVYGSLHVKS  118 (166)
Q Consensus       102 gMtv~sKvL~Gs~~v~S  118 (166)
                      .=.=.--|+.|.+.|..
T Consensus        83 ~R~E~W~Vv~G~a~v~~   99 (151)
T PF01050_consen   83 HRSEHWTVVSGTAEVTL   99 (151)
T ss_pred             ccccEEEEEeCeEEEEE
Confidence            88888889999999886

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=84.86  E-value=1.4  Score=33.47  Aligned_cols=51  Identities=24%  Similarity=0.206  Sum_probs=42.7

Q ss_pred             CCCeeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           68 LAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        68 ~~pi~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      .+.-.|-.+.+.+.+++..+.+++|..+++|-|..=--+--||.|.+.|.-
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~   72 (127)
T COG0662          22 RPWGSYTVLDAGDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI   72 (127)
T ss_pred             eCCcceeecccCCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE
Confidence            344556666788999999999999999999999997778888999888753

>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]

Probab=84.83  E-value=1  Score=37.59  Aligned_cols=47  Identities=23%  Similarity=0.467  Sum_probs=43.3

Q ss_pred             cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEeeccCC
Q 031085           78 ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDL  124 (166)
Q Consensus        78 e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~v~~  124 (166)
                      .+..|.+-|.|--+|---..|||-+-+-|.|+|.|.++=+-|.|-|.
T Consensus        68 GNGKfNLmILCWGeGhgSSvHDHtdsHCF~KmL~G~L~Et~yawPd~  114 (196)
T KOG4064|consen   68 GNGKFNLMILCWGEGHGSSVHDHTDSHCFVKMLDGELTETKYAWPDR  114 (196)
T ss_pred             CCCeEeEEEEEecCCCCccccccccchhHHHHhcCcchhhcccCCCc
Confidence            35789999999999999999999999999999999999999999764

>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]

Probab=80.37  E-value=3.7  Score=34.49  Aligned_cols=46  Identities=20%  Similarity=0.203  Sum_probs=37.3

Q ss_pred             cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEeeccCC
Q 031085           78 ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDL  124 (166)
Q Consensus        78 e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~v~~  124 (166)
                      +-..|||--|.+-||..-|.||| +|-++.-+|.|.=+=.-|-....
T Consensus        69 ~~gfltV~~~t~~PG~~~p~HnH-~~wglVgil~G~E~n~~y~~~~~  114 (191)
T COG5553          69 PQGFLTVYHITLSPGVQYPPHNH-LMWGLVGILWGGETNFIYPLAGE  114 (191)
T ss_pred             ccccEEEEEEEeCCCcccCCccc-chheeeeeeecccccceecccCC
Confidence            44569999999999999999999 79999999999876555554433

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=80.07  E-value=1.6  Score=37.34  Aligned_cols=36  Identities=17%  Similarity=0.222  Sum_probs=30.5

Q ss_pred             ceEEEEEEcCCCCcccC-CCCCCChhhhhhhccceEEE
Q 031085           81 SFSIGIFCMPPSSMIPL-HNHPGMTVLSKLVYGSLHVK  117 (166)
Q Consensus        81 ~fs~~iF~lp~g~~IPL-HDHPgMtv~sKvL~Gs~~v~  117 (166)
                      +|.|.+|.|+||+.||. |-|+.++++ -||.|+..++
T Consensus       178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~-yiL~G~G~~~  214 (260)
T TIGR03214       178 DMNVHILSFEPGASHPYIETHVMEHGL-YVLEGKGVYN  214 (260)
T ss_pred             CcEEEEEEECCCcccCCcccccceeEE-EEEeceEEEE
Confidence            88999999999999996 777766776 7889988764

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	166
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
3uss_A	211	Putative uncharacterized protein; cupin, three his	9e-05
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	3e-04
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 8e-07
 Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 32/140 (22%)

Query: 2   PYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLER 61
           P   +++++   + F P   +    L  +   + K     V      +L +     ++E+
Sbjct: 368 PAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDVMVV----VNKLHKY---SLVEK 419

Query: 62  NGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLV--YGSLHVKSY 119
             +  ++     +     +        +   +   LH          +V  Y     K++
Sbjct: 420 QPKESTI----SIPSIYLE------LKVKLENEYALHR--------SIVDHYNIP--KTF 459

Query: 120 DWLDLPEPEDPLQGVFFWHI 139
           D  DL  P   L   F+ HI
Sbjct: 460 DSDDLIPP--YLDQYFYSHI 477

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} Length = 211

 Score = 40.1 bits (93), Expect = 9e-05
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 9/131 (6%)

Query: 24  DEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKY----LHLHEC 79
            + +  +  +LD        L Q   L+                  P +Y    LH+   
Sbjct: 11  RQFIGELATLLDSRPDESTLLAQAHPLLAELVHQDDWLPEDCARPDPQRYQQYLLHVDSR 70

Query: 80  DSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPEPEDPLQGVFFWHI 139
             FS+  F   P  + P+H+H    ++  ++ G+ + + Y +     P            
Sbjct: 71  QRFSVVSFVWGPGQITPVHDHRVWGLI-GMLRGAEYSQPYAFDAGGRPHPSGA----RRR 125

Query: 140 LCPSSIDFLNP 150
           L P  ++ L+P
Sbjct: 126 LEPGEVEALSP 136

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19 Length = 208

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 15/123 (12%)

Query: 1   MPYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLE 60
               ++       A      P     L    A+L ++   D  L         +  P  E
Sbjct: 12  SLAPLREFITGLSALLDE-QPGEARILREGGALLARLVARDDWLPDA------FAQPHPE 64

Query: 61  RNGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD 120
              +         LH    + FSI  F   P    P+H+H    ++  ++ G+ + + + 
Sbjct: 65  YYQQML-------LHCDSAERFSIVSFVWGPGQRTPIHDHTVWGLI-GMLRGAEYSQPFV 116

Query: 121 WLD 123
              
Sbjct: 117 LDG 119

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis} Length = 171

 Score = 37.5 bits (86), Expect = 8e-04
 Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 3/106 (2%)

Query: 24  DEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFS 83
            E ++ +   L      D+      Q+       + +   + P         ++  +   
Sbjct: 14  YECIQDIFGGLKNPSVKDL-ATSLKQIPNAAK--LSQPYIKEPDQYAYGRNAIYRNNELE 70

Query: 84  IGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPEPED 129
           I +  +PP+    +H+H      + ++ G L    Y          
Sbjct: 71  IIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELS 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	166
3uss_A	211	Putative uncharacterized protein; cupin, three his	98.74
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	98.62
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	98.57
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	98.5
3h8u_A	125	Uncharacterized conserved protein with double-STR	96.6
1v70_A	105	Probable antibiotics synthesis protein; structural	96.53
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	96.2
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	96.13
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	95.97
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	95.8
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	95.66
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	95.57
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	95.32
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	95.3
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	95.21
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	95.19
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	95.04
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	94.66
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	94.45
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	94.36
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	94.34
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	94.33
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	93.79
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	93.64
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	93.5
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	92.97
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	92.36
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	91.46
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	91.39
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	91.05
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	90.63
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	90.57
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	90.45
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	90.05
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	89.9
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	89.43
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	89.36
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	89.29
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	89.02
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	88.93
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	88.87
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	88.57
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	88.47
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	88.38
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	88.01
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	87.47
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	86.38
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	85.94
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	84.85
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	84.16
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	83.49
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	83.28
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	83.04
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	82.51
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	82.47
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	82.44
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	81.88
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	81.05
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	80.83
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	80.14

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=98.74  E-value=2.7e-08  Score=81.81  Aligned_cols=105  Identities=15%  Similarity=0.199  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHhccCCccCCCCchhhhcccCCCCCCccCCCCCCCCCCeeEEeeecCC--
Q 031085            3 YYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECD--   80 (166)
Q Consensus         3 ~~IQrL~~~c~~tFs~~~~ps~~~l~kL~~lLd~Itp~DvgLd~~~~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e~~--   80 (166)
                      ..+++++...++.+.++. ...+.+++|+.+|.++...|--|......+.               ...-+..-||++.  
T Consensus         8 ~~l~~fi~~l~~~l~~~~-~~~~~l~~l~~ll~~l~~~~~wl~~~~~~p~---------------~~~y~r~lL~~dp~~   71 (211)
T 3uss_A            8 DRLRQFIGELATLLDSRP-DESTLLAQAHPLLAELVHQDDWLPEDCARPD---------------PQRYQQYLLHVDSRQ   71 (211)
T ss_dssp             HHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHTSSCCCCCGGGGCCC---------------SSSCEEEEEEECTTS
T ss_pred             HHHHHHHHHHHHHHccCC-chHHHHHHHHHHHHHHHcCccccchhhcCCC---------------CCceeEEEEecCCCC
Confidence            468888889998887533 3456899999999999888754443221110               0112345788765  


Q ss_pred             ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEeeccCC
Q 031085           81 SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDL  124 (166)
Q Consensus        81 ~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~v~~  124 (166)
                      .|+|-+++.+||...|+|||. +.++.+||.|.++.+.|+|.+.
T Consensus        72 ~f~v~~l~W~PGq~spiHDH~-swg~~~Vl~G~l~e~~y~~~~~  114 (211)
T 3uss_A           72 RFSVVSFVWGPGQITPVHDHR-VWGLIGMLRGAEYSQPYAFDAG  114 (211)
T ss_dssp             SCEEEEEEECTTCBCCSBCCS-SCEEEEEEESCEEEEEEEECTT
T ss_pred             CEEEEEEEECCCCcCCCCCCC-eeEEEEeeeceEEEEEeeeCCC
Confidence            999999999999999999999 9999999999999999999863

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=98.62  E-value=1e-07  Score=77.58  Aligned_cols=106  Identities=19%  Similarity=0.190  Sum_probs=77.2

Q ss_pred             ChHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHhccCCccCCCCchhhhcccCCCCCCccCCCCCCCCCCeeEEeeecC--
Q 031085            2 PYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHEC--   79 (166)
Q Consensus         2 ~~~IQrL~~~c~~tFs~~~~ps~~~l~kL~~lLd~Itp~DvgLd~~~~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e~--   79 (166)
                      +..++++++.+++.|.. +..+.+.++.|+.+|.++...+=-+.....   .            .....-+..-||++  
T Consensus        13 ~~~l~~fi~~l~~~~~~-~~~~~~~l~~l~~ll~~l~~~~~wl~~~~~---~------------~~~~~y~r~lL~~dp~   76 (208)
T 2gm6_A           13 LAPLREFITGLSALLDE-QPGEARILREGGALLARLVARDDWLPDAFA---Q------------PHPEYYQQMLLHCDSA   76 (208)
T ss_dssp             CHHHHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHSCCSCCGGGS---C------------CCSSSCEEEEEEECTT
T ss_pred             cHHHHHHHHHHHHHHhc-cCCcHHHHHHHHHHHHHHhcCchhhhhhhc---C------------CCccceeEEEeecCCC
Confidence            35689999999999974 334455668888888776554222222110   0            00112345568886  


Q ss_pred             CceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEeeccCC
Q 031085           80 DSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDL  124 (166)
Q Consensus        80 ~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~v~~  124 (166)
                      +.|++-+++.+||..-|.|||++ .++.+||.|+++.+-|+|.+.
T Consensus        77 ~~~~v~~l~w~PGq~spiHdH~~-~~~~~VL~G~l~e~~y~~~~~  120 (208)
T 2gm6_A           77 ERFSIVSFVWGPGQRTPIHDHTV-WGLIGMLRGAEYSQPFVLDGS  120 (208)
T ss_dssp             SSCEEEEEEECTTCBCCSBCCSS-CEEEEEEESCEEEEEEEECTT
T ss_pred             CCEEEEEEEeCCCcccCcccCCc-ceEEEEecccEEEEEeecCCC
Confidence            69999999999999999999998 999999999999999999763

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=98.57  E-value=1e-07  Score=77.41  Aligned_cols=102  Identities=20%  Similarity=0.341  Sum_probs=72.7

Q ss_pred             CChHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHhccCCcc--CCCCchhhhcccCCCCCCccCCCCCCCCCCeeEEeeec
Q 031085            1 MPYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPS--DVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHE   78 (166)
Q Consensus         1 m~~~IQrL~~~c~~tFs~~~~ps~~~l~kL~~lLd~Itp~--DvgLd~~~~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e   78 (166)
                      +|+.++.|++.-++.|.+.. +   +++.|+.+|.++...  |..  +    +..+         .   ...-+-.-||+
T Consensus         8 ~~~~l~~li~~l~~~~~~~~-~---~~~~l~~ll~~l~~~~~~W~--~----~~~~---------d---~~~y~R~ll~~   65 (200)
T 3eln_A            8 KPRTLADLIRILHELFAGDE-V---NVEEVQAVLEAYESNPAEWA--L----YAKF---------D---QYRYTRNLVDQ   65 (200)
T ss_dssp             CCSSHHHHHHHHHHHTSSSS-C---CHHHHHHHHHHSCCCHHHHG--G----GCCC---------C---SSSCEEEEEEC
T ss_pred             ChHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHHHHcCHHHHH--h----hhcc---------C---ccceEEEeeec
Confidence            35668899999999997532 3   345566666665432  121  1    1000         0   11233445676


Q ss_pred             -CCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEeeccCC
Q 031085           79 -CDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDL  124 (166)
Q Consensus        79 -~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~v~~  124 (166)
                       ++.|+|-+++.+||..-|+|||.+..++.+||.|.++.+.|+|.+.
T Consensus        66 ~~~~~~l~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~  112 (200)
T 3eln_A           66 GNGKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDK  112 (200)
T ss_dssp             GGGTCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCS
T ss_pred             CCCceEEEEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCC
Confidence             5789999999999999999999999999999999999999999653

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=98.50  E-value=4.9e-07  Score=71.94  Aligned_cols=97  Identities=15%  Similarity=0.195  Sum_probs=71.8

Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHHHHHHhccCCccCCCCchhhhcccCCCCCCccCCCCCCCCCCeeEEeeecCCceEEEE
Q 031085            7 RLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSIGI   86 (166)
Q Consensus         7 rL~~~c~~tFs~~~~ps~~~l~kL~~lLd~Itp~DvgLd~~~~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e~~~fs~~i   86 (166)
                      .||++-++.|.+...+++++++++   |.+.     .++++...  .+.     .   ......-+-.-||+++.|+|-+
T Consensus        12 ~~~~~~~~~~~~l~~~~~~~l~~~---l~~~-----~~~~~~w~--~~~-----~---~~~~~~YtR~ll~~~~~~~v~~   73 (171)
T 3eqe_A           12 ELYECIQDIFGGLKNPSVKDLATS---LKQI-----PNAAKLSQ--PYI-----K---EPDQYAYGRNAIYRNNELEIIV   73 (171)
T ss_dssp             CHHHHHHHHHTTCSSCCHHHHHHH---HTTS-----TTHHHHHT--TSC-----C---CCSSSSSEEEEEEECSSCEEEE
T ss_pred             HHHHHHHHHhcCCCCCCHHHHHHH---HHHh-----cCCHHHHh--hcc-----c---CCCCCcEEEEEEecCCCeEEEE
Confidence            488999999987566777766554   4443     34433321  110     0   0111234556788999999999


Q ss_pred             EEcCCCCcccCCCCCCChhhhhhhccceEEEEeec
Q 031085           87 FCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDW  121 (166)
Q Consensus        87 F~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~  121 (166)
                      ++.+||..-|+|||.+-.++.+||.|+++.+.|+|
T Consensus        74 l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~  108 (171)
T 3eqe_A           74 INIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRS  108 (171)
T ss_dssp             EEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEE
T ss_pred             EEECCCCCcccccCCCceEEEEEEeeeEEEEEeec
Confidence            99999999999999999999999999999999998

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=96.60  E-value=0.0015  Score=46.33  Aligned_cols=45  Identities=16%  Similarity=0.160  Sum_probs=39.5

Q ss_pred             EEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEE
Q 031085           73 YLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVK  117 (166)
Q Consensus        73 y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~  117 (166)
                      ...+++++.+.+..+.++||..+|.|.|++..-+.-||.|++.+.
T Consensus        30 ~~~~~~~~~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~   74 (125)
T 3h8u_A           30 RSVVLETNDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYH   74 (125)
T ss_dssp             CEEEEECSSCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEE
T ss_pred             EEEEEcCCCEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEE
Confidence            345778899999999999999999999999888899999999974

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=96.53  E-value=0.0024  Score=42.59  Aligned_cols=49  Identities=12%  Similarity=0.287  Sum_probs=43.4

Q ss_pred             CeeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           70 PIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        70 pi~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      .+....++..+.+.+..+.+++|..+|.|-|++..-+.-|+.|++.+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~   64 (105)
T 1v70_A           16 KMAKIPVFQSERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV   64 (105)
T ss_dssp             SCEEEEEEEETTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE
T ss_pred             ccccceecCCCceEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE
Confidence            4566778899999999999999999999999998778889999999764

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=96.20  E-value=0.006  Score=41.95  Aligned_cols=50  Identities=14%  Similarity=0.169  Sum_probs=43.2

Q ss_pred             CCeeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           69 APIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        69 ~pi~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      |.-.|-.+.+.+.+.+....++||+..+.|-|++-.-+.-||.|.+.+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~   54 (97)
T 2fqp_A            5 PGAIPTVQIDNERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET   54 (97)
T ss_dssp             CBCEEEEEEESSSEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE
T ss_pred             CCCceeEEEcCCeEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe
Confidence            33456777889999999999999999999999998778889999999864

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=96.13  E-value=0.0024  Score=45.27  Aligned_cols=46  Identities=20%  Similarity=0.231  Sum_probs=40.4

Q ss_pred             eEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEE
Q 031085           72 KYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVK  117 (166)
Q Consensus        72 ~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~  117 (166)
                      .+--+.|+++|.+--+.++||+.+|+|-||.-..+--|+.|.++|.
T Consensus         7 ~~~V~ien~~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~   52 (98)
T 3lag_A            7 KSEIQIDNDEVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIV   52 (98)
T ss_dssp             EEEEEEESSSEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEE
T ss_pred             eeeEEEcCCeEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEE
Confidence            4555789999999999999999999999999888888999999885

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=95.97  E-value=0.0041  Score=44.44  Aligned_cols=45  Identities=11%  Similarity=0.175  Sum_probs=40.5

Q ss_pred             EEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           73 YLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        73 y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      -..+++.+.+.+..+.+++|..+|.|.||+. -+.-||.|++.+..
T Consensus        27 ~~~l~~~~~~~v~~~~l~~G~~~~~H~H~~~-e~~~Vl~G~~~~~i   71 (114)
T 3fjs_A           27 SAALFKEHRLEVMRMVLPAGKQVGSHSVAGP-STIQCLEGEVEIGV   71 (114)
T ss_dssp             CEEEEEETTEEEEEEEECTTCEEEEECCSSC-EEEEEEESCEEEEE
T ss_pred             eEEEEeCCCEEEEEEEECCCCccCceeCCCc-EEEEEEECEEEEEE
Confidence            4667889999999999999999999999996 78899999999864

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=95.80  E-value=0.0092  Score=40.63  Aligned_cols=48  Identities=19%  Similarity=0.250  Sum_probs=40.2

Q ss_pred             eeEEeeecCCceEEEEEEcCCCCcccCCCCCC-ChhhhhhhccceEEEE
Q 031085           71 IKYLHLHECDSFSIGIFCMPPSSMIPLHNHPG-MTVLSKLVYGSLHVKS  118 (166)
Q Consensus        71 i~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPg-Mtv~sKvL~Gs~~v~S  118 (166)
                      +....+.+++.|++..+.+++|..+|.|.|+. .-.+.-|+.|++.+..
T Consensus        22 ~~~~~l~~~~~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~   70 (110)
T 2q30_A           22 FVMELVHESENFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG   70 (110)
T ss_dssp             CEEEEEEECSSCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC
T ss_pred             EEEEEEecCCCEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe
Confidence            44556788999999999999999999999996 4555788999998753

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=95.66  E-value=0.011  Score=40.97  Aligned_cols=49  Identities=16%  Similarity=0.307  Sum_probs=43.8

Q ss_pred             CCeeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           69 APIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        69 ~pi~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      ..+....+++.+.+++..+.+++|..+|.|-|++ .-+.-|+.|++.+..
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~g~~~~~H~H~~-~e~~~vl~G~~~~~~   75 (115)
T 1yhf_A           27 DQMLSRTLVQRQDLGITVFSLDKGQEIGRHSSPG-DAMVTILSGLAEITI   75 (115)
T ss_dssp             TCEEEEEEEEETTEEEEEEEECTTCEEEEECCSS-EEEEEEEESEEEEEE
T ss_pred             CCeEEEEEEeCCceEEEEEEECCCCccCCEECCC-cEEEEEEeCEEEEEE
Confidence            4678888999999999999999999999999996 678889999998864

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=95.57  E-value=0.0049  Score=47.84  Aligned_cols=52  Identities=23%  Similarity=0.264  Sum_probs=41.3

Q ss_pred             CCCeeEEeeecC--CceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031085           68 LAPIKYLHLHEC--DSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD  120 (166)
Q Consensus        68 ~~pi~y~~i~e~--~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd  120 (166)
                      .+.+....|+.+  +.-.+.++-++||+.+|.|.|||- ...-||.|+.+..-.+
T Consensus        26 ~~Gv~~~~L~~d~~~g~~v~lvr~~pG~~~p~H~H~g~-ee~~VL~G~~~~~e~~   79 (159)
T 3ebr_A           26 SNDVMVKYFKIDPVRGETITLLKAPAGMEMPRHHHTGT-VIVYTVQGSWRYKEHD   79 (159)
T ss_dssp             CSSSEEEEEEEETTTTEEEEEEEECSSCBCCCEEESSC-EEEEEEESCEEETTSS
T ss_pred             CCCEEEEEeeEcCCCCeEEEEEEECCCCCcccccCCCC-EEEEEEEeEEEEeCCC
Confidence            356788888765  678889999999999999999994 5556999998843333

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=95.30  E-value=0.014  Score=46.45  Aligned_cols=49  Identities=16%  Similarity=0.151  Sum_probs=43.3

Q ss_pred             CCeeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           69 APIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        69 ~pi~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      ..+....+.+++.+++.++.+++|+.+|.|.||+- -+.-||.|++.+..
T Consensus       140 g~~~~~~l~~~~~~~~~~~~~~~G~~~~~H~H~~~-e~~~Vl~G~~~~~i  188 (227)
T 3rns_A          140 GKIVSKNLVAKPNLVMTIMSFWKGESLDPHKAPGD-ALVTVLDGEGKYYV  188 (227)
T ss_dssp             TCEEEEEEEEETTEEEEEEEECTTCEEEEECCSSE-EEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEECCCeEEEEEEECCCCccCCEECCCc-EEEEEEeEEEEEEE
Confidence            35788899999999999999999999999999964 57789999999763

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=95.21  E-value=0.021  Score=45.39  Aligned_cols=49  Identities=12%  Similarity=0.100  Sum_probs=41.4

Q ss_pred             CCeeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           69 APIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        69 ~pi~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      ..+.-..+++.+...+.+|.|++|+.||.|.||+ ..+.-||.|++.+.-
T Consensus        24 ~~~~sr~l~~~~~~~~~~~~~~~G~~~~~h~h~~-~~~~~Vl~G~~~~~i   72 (227)
T 3rns_A           24 AEVVSMRILNQPNSYISLFSLAKDEEITAEAMLG-NRYYYCFNGNGEIFI   72 (227)
T ss_dssp             TCEEEEEEEECSSEEEEEEEECTTCEEEECSCSS-CEEEEEEESEEEEEE
T ss_pred             CCEEEEehhcCCCcEEEEEEECCCCccCccccCC-CEEEEEEeCEEEEEE
Confidence            3455567788899999999999999999999997 466779999998764

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=95.19  E-value=0.013  Score=41.21  Aligned_cols=43  Identities=16%  Similarity=0.367  Sum_probs=37.3

Q ss_pred             eeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           75 HLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        75 ~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      .+...+.+++..+.+++|..+|.|-|++ .-+.-||.|++.+..
T Consensus        34 ~~~~~~~~~~~~~~~~pg~~~~~H~H~~-~e~~~vl~G~~~~~~   76 (126)
T 4e2g_A           34 QAIQGKNLMLNWVRIEPNTEMPAHEHPH-EQAGVMLEGTLELTI   76 (126)
T ss_dssp             EEEECSSCEEEEEEECTTCEEEEECCSS-EEEEEEEEECEEEEE
T ss_pred             EEEeCCCeEEEEEEECCCCcCCCccCCC-ceEEEEEEeEEEEEE
Confidence            3346789999999999999999999998 668889999999754

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=94.66  E-value=0.022  Score=38.67  Aligned_cols=44  Identities=14%  Similarity=0.048  Sum_probs=38.5

Q ss_pred             eeecCCceEEEEEEcCCCCcccCC--CCCCChhhhhhhccceEEEE
Q 031085           75 HLHECDSFSIGIFCMPPSSMIPLH--NHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        75 ~i~e~~~fs~~iF~lp~g~~IPLH--DHPgMtv~sKvL~Gs~~v~S  118 (166)
                      .++..+.+.+..+.+++|..+|.|  -|++..-+.-|+.|++.+..
T Consensus        14 ~l~~~~~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~   59 (113)
T 2gu9_A           14 VLFSLRQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV   59 (113)
T ss_dssp             C-CEETTEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE
T ss_pred             EEEcCCcEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE
Confidence            356778999999999999999999  99988888899999999864

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=94.45  E-value=0.089  Score=36.44  Aligned_cols=47  Identities=17%  Similarity=0.247  Sum_probs=39.2

Q ss_pred             eeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           71 IKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        71 i~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      +....+.+++.+.+.+|.+++|..+|.|.||+-. +.-||.|++.+..
T Consensus        27 ~~~~~l~~~~~~~~~~~~~~~g~~~~~H~h~~~e-~~~vl~G~~~~~i   73 (114)
T 2ozj_A           27 VLSMALAQSDRVQISLFSFADGESVSEEEYFGDT-LYLILQGEAVITF   73 (114)
T ss_dssp             EEEEECEECSSEEEEEEEEETTSSCCCBCCSSCE-EEEEEEEEEEEEE
T ss_pred             EEEEEEEcCCCceEEEEEECCCCccccEECCCCe-EEEEEeCEEEEEE
Confidence            3345577888899999999999999999999754 7789999998754

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=94.36  E-value=0.32  Score=36.80  Aligned_cols=94  Identities=16%  Similarity=0.034  Sum_probs=60.1

Q ss_pred             CCCHHHHHHHHHHhccCCccCCCCchh---hhcccCCCCCCccCCC---CCCCCCCeeEEeeec---CCceEEEEEEcCC
Q 031085           21 PVTDEALERVRAMLDKIKPSDVGLEQE---AQLVRNWPGPVLERNG---RHPSLAPIKYLHLHE---CDSFSIGIFCMPP   91 (166)
Q Consensus        21 ~ps~~~l~kL~~lLd~Itp~DvgLd~~---~~~~~~~~~~~~~~~g---~~~~~~pi~y~~i~e---~~~fs~~iF~lp~   91 (166)
                      .|+.+.+.+|...++ +++.+|=-+++   .......  ....+..   .......+.|..+..   ...|.+..+.++|
T Consensus        50 ~p~~~~l~~ia~~l~-~~~~~l~~~~~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p  126 (198)
T 2bnm_A           50 ELTLTQLGRIAHVLG-TSIGALTPPAGNDLDDGVIIQ--MPDERPILKGVRDNVDYYVYNCLVRTKRAPSLVPLVVDVLT  126 (198)
T ss_dssp             TCBHHHHHHHHHHTT-SCTGGGSCCCCCCCBTTBCCC--CGGGCCEECCSTTCSTTEEEEECCCCTTSTTCEEEEEEECC
T ss_pred             CCCHHHHHHHHHHhC-CCHHHEEccCCCCcccCceEE--eecccccccccccCCCceEEEeeccCCCCCcceEEEEEEcC
Confidence            588889999988885 46666533222   1100000  0000000   011234577777764   5788899999999


Q ss_pred             CCccc---CCCCCCChhhhhhhccceEEEE
Q 031085           92 SSMIP---LHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        92 g~~IP---LHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      |...+   .|.|++ .-+.-||.|++.+.-
T Consensus       127 g~~~~~~~~h~h~~-~E~~~Vl~G~~~~~~  155 (198)
T 2bnm_A          127 DNPDDAKFNSGHAG-NEFLFVLEGEIHMKW  155 (198)
T ss_dssp             CCGGGCCCCCCCSS-CEEEEEEESCEEEEE
T ss_pred             CCCCcccccccCCC-eEEEEEEeeeEEEEE
Confidence            99998   799999 577789999999864

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=94.34  E-value=0.035  Score=38.38  Aligned_cols=49  Identities=18%  Similarity=0.124  Sum_probs=40.2

Q ss_pred             CCeeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           69 APIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        69 ~pi~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      +.+.+..+...+.+++..+.+++|..+|.|-|++ .-+.-|+.|++.+..
T Consensus        21 ~g~~~~~l~~~~~~~~~~~~~~pg~~~~~H~H~~-~e~~~vl~G~~~~~~   69 (116)
T 2pfw_A           21 GGLKRQMLGFNHELMAVKIWFDKGAEGYVHAHRH-SQVSYVVEGEFHVNV   69 (116)
T ss_dssp             TTEEEEEEEEETTEEEEEEEECTTEEEEEECCSS-EEEEEEEEECEEEEE
T ss_pred             CCeEEEEEecCCceEEEEEEECCCCcCCcEECCc-ceEEEEEeeEEEEEE
Confidence            4566766665678999999999999999999995 556679999998764

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=94.33  E-value=0.039  Score=40.70  Aligned_cols=47  Identities=17%  Similarity=0.191  Sum_probs=41.1

Q ss_pred             EeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031085           74 LHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD  120 (166)
Q Consensus        74 ~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd  120 (166)
                      ..++....|++.++.++||..+|.|-|++..-+.-||.|++.+..-+
T Consensus        35 ~~~~~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~   81 (148)
T 2oa2_A           35 RALWTGDHLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGH   81 (148)
T ss_dssp             EEEEECSSCEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEES
T ss_pred             eEEEcCCceEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECC
Confidence            34567889999999999999999999998888888999999987644

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=93.79  E-value=0.047  Score=38.09  Aligned_cols=46  Identities=13%  Similarity=0.226  Sum_probs=38.8

Q ss_pred             eEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           72 KYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        72 ~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      .+-.++..+.|.+..+.+++|..+|.|-|+... +.-|+.|++.+..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~pg~~~~~H~H~~~e-~~~Vl~G~~~~~i   62 (117)
T 2b8m_A           17 VVEKLVNTEHVQINHIVLPRGEQMPKHYSNSYV-HLIIIKGEMTLTL   62 (117)
T ss_dssp             EEEEEEECSSCEEEEEEEETTCBCCCEECSSCE-EEEEEESEEEEEE
T ss_pred             eeeeecCCCceEEEEEEECCCCcCCCEeCCCcE-EEEEEeCEEEEEE
Confidence            355678899999999999999999999998754 5569999998865

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=93.64  E-value=0.034  Score=41.80  Aligned_cols=47  Identities=28%  Similarity=0.303  Sum_probs=37.5

Q ss_pred             CCeeEEeeecCCc--eEEEEEEcCCCCcccCCCCCCChhhhhhhccceEE
Q 031085           69 APIKYLHLHECDS--FSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHV  116 (166)
Q Consensus        69 ~pi~y~~i~e~~~--fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v  116 (166)
                      +.+....|+.++.  -.+.++-+++|+.+|.|.||+-.- .-||.|+...
T Consensus        29 ~Gv~~~~L~~~~~~g~~~~~~~~~pG~~~p~H~H~~~ee-~~VL~G~~~~   77 (145)
T 2o1q_A           29 GGIRWKLLHVSPEMGSWTAIFDCPAGSSFAAHVHVGPGE-YFLTKGKMDV   77 (145)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEECTTEEECCEEESSCEE-EEEEEEEEEE
T ss_pred             CCcEEEEeeECCCcccEEEEEEECCCCCCCccCCCCCEE-EEEEEeEEEE
Confidence            4566777765543  368889999999999999998666 6899999885

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=93.50  E-value=0.019  Score=41.01  Aligned_cols=37  Identities=24%  Similarity=0.360  Sum_probs=34.4

Q ss_pred             CceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEE
Q 031085           80 DSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVK  117 (166)
Q Consensus        80 ~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~  117 (166)
                      ..|++..+.+++|..+|.|-|++...+ -||.|++.+.
T Consensus        37 ~~~~~~~~~~~pg~~~~~H~H~~~e~~-~vl~G~~~~~   73 (145)
T 3ht1_A           37 DRFVLTEFEVSPNGSTPPHFHEWEHEI-YVLEGSMGLV   73 (145)
T ss_dssp             CSEEEEEEEEEEEEECCCEECSSCEEE-EEEEECEEEE
T ss_pred             CcEEEEEEEECCCCcCCCccCCCceEE-EEEEeEEEEE
Confidence            489999999999999999999999887 4999999998

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=92.97  E-value=0.053  Score=42.39  Aligned_cols=46  Identities=17%  Similarity=0.213  Sum_probs=36.4

Q ss_pred             CeeEEeeecC--CceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEE
Q 031085           70 PIKYLHLHEC--DSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHV  116 (166)
Q Consensus        70 pi~y~~i~e~--~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v  116 (166)
                      .+....++.+  +.-.+.++-+++|+.+|.|.||+.. ..-||.|+.+.
T Consensus        29 GV~~~~L~~~~~~g~~v~lvr~~pG~~~p~H~H~g~e-e~~VL~G~f~~   76 (165)
T 3cjx_A           29 GTDIFPLFMDPYNGLMVMRASFAPGLTLPLHFHTGTV-HMYTISGCWYY   76 (165)
T ss_dssp             TEEEEEEEEETTTTEEEEEEEECTTCBCCEEEESSCE-EEEEEESEEEE
T ss_pred             CEEEEEeEeCCCCCcEEEEEEECCCCcCCcccCCCCE-EEEEEEEEEEE
Confidence            5666666644  5578899999999999999999854 44599999885

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=92.36  E-value=0.059  Score=42.11  Aligned_cols=42  Identities=24%  Similarity=0.294  Sum_probs=37.4

Q ss_pred             cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEe
Q 031085           78 ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSY  119 (166)
Q Consensus        78 e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Sy  119 (166)
                      .+..+++...-+++|..+|.|-||+..-+.-||.|++.+.-.
T Consensus        68 ~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~  109 (201)
T 1fi2_A           68 NTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGIL  109 (201)
T ss_dssp             TTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEE
T ss_pred             ccCceEEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEE
Confidence            455789999999999999999999998999999999998665

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=91.46  E-value=0.13  Score=39.26  Aligned_cols=49  Identities=18%  Similarity=0.229  Sum_probs=38.4

Q ss_pred             CCeeEEeeec------CCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           69 APIKYLHLHE------CDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        69 ~pi~y~~i~e------~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      ..+++..+..      ...|.+.++.++||..+|+|-|+... +.-||.|++.+..
T Consensus        37 ~g~~~~~L~~~~~g~~~~~~~~~~~~l~pG~~~~~H~H~~~E-~~~Vl~G~~~~~i   91 (167)
T 3ibm_A           37 SGARRQTLVGRPAGQEAPAFETRYFEVEPGGYTTLERHEHTH-VVMVVRGHAEVVL   91 (167)
T ss_dssp             CCEEEEEEECTTTTCCSSSEEEEEEEECTTCBCCCBBCSSCE-EEEEEESEEEEEE
T ss_pred             CCcEEEEEECCCCCCCCCcEEEEEEEECCCCCCCCccCCCcE-EEEEEeCEEEEEE
Confidence            3456655553      24799999999999999999998654 5569999999864

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=91.39  E-value=0.21  Score=39.94  Aligned_cols=84  Identities=20%  Similarity=0.310  Sum_probs=56.2

Q ss_pred             HHHHhhhcCC-CCCCCHHHHHHHHHHhccCCccCCCCchhhhcccCCCCCCccCCCCCCCCCCeeEEeeecCCceEEEEE
Q 031085            9 YNTCRAAFSP-EGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHECDSFSIGIF   87 (166)
Q Consensus         9 ~~~c~~tFs~-~~~ps~~~l~kL~~lLd~Itp~DvgLd~~~~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e~~~fs~~iF   87 (166)
                      .+.+++-|.. +-+.++.+       .++|...|+|+..-..                   -..+-+.+-..+.+..-+.
T Consensus         5 ~~~~~~~~~~~~~~lp~~e-------~~~iditDfG~gdf~~-------------------~Gl~l~t~~N~~~Y~~K~l   58 (175)
T 2y0o_A            5 KEEVNSYYQKAGIVLTDEE-------VDQIQLMDYGLGKERK-------------------VGLQLFVYVNTDRYCSKEL   58 (175)
T ss_dssp             HHHHHHHHHHTTCCCCHHH-------HTTCEEECTTSSCTTT-------------------BCEEEEEEEECSSEEEEEE
T ss_pred             HHHHHHHHHHCCCCCCchh-------hcCeEEEEcCCchhhh-------------------cCcEEEEEECCcCceEEEE
Confidence            4555666654 33444442       4566777999875442                   1245555666667888889


Q ss_pred             EcCCCCcccCCCCCC------ChhhhhhhccceEEEE
Q 031085           88 CMPPSSMIPLHNHPG------MTVLSKLVYGSLHVKS  118 (166)
Q Consensus        88 ~lp~g~~IPLHDHPg------Mtv~sKvL~Gs~~v~S  118 (166)
                      .+.||.+.|+|-||.      ..==..|+.|.+.+..
T Consensus        59 ~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~   95 (175)
T 2y0o_A           59 VLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYV   95 (175)
T ss_dssp             EECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEE
T ss_pred             EECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEE
Confidence            999999999999998      4433338889977755

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=91.05  E-value=0.11  Score=38.51  Aligned_cols=41  Identities=12%  Similarity=0.088  Sum_probs=36.2

Q ss_pred             cCCceEEEEEEcCCCC-cccCCCCCCChhhhhhhccceEEEE
Q 031085           78 ECDSFSIGIFCMPPSS-MIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        78 e~~~fs~~iF~lp~g~-~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      ....|.+.++.++||. .+|.|-|+...-+.-||.|++.+..
T Consensus        42 g~~~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~   83 (162)
T 3l2h_A           42 GLRHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM   83 (162)
T ss_dssp             TCCSEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE
T ss_pred             CCCeEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE
Confidence            4578999999999999 5999999888888999999999864

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=90.63  E-value=0.11  Score=39.28  Aligned_cols=48  Identities=17%  Similarity=0.211  Sum_probs=39.8

Q ss_pred             eeEEeee---cCCceEEEEEEcCCCCcc-cCCCCCCChhhhhhhccceEEEE
Q 031085           71 IKYLHLH---ECDSFSIGIFCMPPSSMI-PLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        71 i~y~~i~---e~~~fs~~iF~lp~g~~I-PLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      ..+..+.   ....|.+.++.++||... |.|-|+++.-+.-||.|++.+..
T Consensus        29 ~~~~~l~~~~~~~~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~   80 (163)
T 3i7d_A           29 RSSLRLGDAGGLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD   80 (163)
T ss_dssp             EEEEEHHHHTTCCSEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE
T ss_pred             eEEEEcccCCCCCeEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE
Confidence            4455554   457899999999999976 89999999888899999999875

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=90.57  E-value=0.062  Score=41.49  Aligned_cols=42  Identities=17%  Similarity=0.332  Sum_probs=37.0

Q ss_pred             ecC-CceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEe
Q 031085           77 HEC-DSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSY  119 (166)
Q Consensus        77 ~e~-~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Sy  119 (166)
                      ..+ ..+++....++||+..|.| ||+-.=+.-||.|++.+.-.
T Consensus        35 ~~~~~~~~~~~~~l~pg~~~~pH-h~~a~E~~yVl~G~~~v~v~   77 (178)
T 1dgw_A           35 LENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLV   77 (178)
T ss_dssp             GGGGTTEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEE
T ss_pred             cCCcCcEEEEEEEecCCcEecCc-CCCCCEEEEEEeEEEEEEEE
Confidence            345 6799999999999999999 99999999999999988643

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=90.45  E-value=0.094  Score=43.47  Aligned_cols=40  Identities=18%  Similarity=0.109  Sum_probs=34.7

Q ss_pred             ecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEE
Q 031085           77 HECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVK  117 (166)
Q Consensus        77 ~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~  117 (166)
                      ++.+++++|+..++||...|.|.||+- =+.-||.|.+.++
T Consensus       127 ~~s~~l~lG~v~l~PG~~yP~HsHp~E-Eiy~VLsG~~e~~  166 (217)
T 4b29_A          127 FLTQSLRVTVGYWGPGLDYGWHEHLPE-ELYSVVSGRALFH  166 (217)
T ss_dssp             EECSSCEEEEEEECSSCEEEEEECSSE-EEEEEEEECEEEE
T ss_pred             CCCCeEEEEEEEECCCCcCCCCCCCCc-eEEEEEeCCEEEE
Confidence            578999999999999999999999974 5667889997653

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=90.05  E-value=0.082  Score=47.72  Aligned_cols=42  Identities=10%  Similarity=0.055  Sum_probs=37.7

Q ss_pred             CCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031085           79 CDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD  120 (166)
Q Consensus        79 ~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd  120 (166)
                      ...+++..+.|+||+.+|+|.||+-+=+.-||.|++.+.-.+
T Consensus       335 ~l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~  376 (476)
T 1fxz_A          335 WLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVN  376 (476)
T ss_dssp             TTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEEC
T ss_pred             cCcceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEe
Confidence            347999999999999999999999999999999999986544

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=89.90  E-value=0.097  Score=40.35  Aligned_cols=47  Identities=15%  Similarity=0.095  Sum_probs=37.3

Q ss_pred             eeEEeee--cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           71 IKYLHLH--ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        71 i~y~~i~--e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      ++..-+.  +...|.+..|.++||..+|+|-|+... +.-|+.|++.+..
T Consensus        40 v~~r~L~~~~~~~~~~~~~~l~pG~~~~~H~H~~~E-~~~Vl~G~~~~~v   88 (166)
T 3jzv_A           40 VTRQVLFSGNGLTGELRYFEVGPGGHSTLERHQHAH-GVMILKGRGHAMV   88 (166)
T ss_dssp             EEEEEEECCTTCSEEEEEEEEEEEEECCCBBCSSCE-EEEEEEECEEEEE
T ss_pred             eEEEEEECCCCCeEEEEEEEECCCCccCceeCCCcE-EEEEEeCEEEEEE
Confidence            4444444  336799999999999999999999986 4569999999864

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=89.43  E-value=0.3  Score=36.14  Aligned_cols=47  Identities=15%  Similarity=0.135  Sum_probs=38.9

Q ss_pred             eeEEeeec----CCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           71 IKYLHLHE----CDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        71 i~y~~i~e----~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      +.+..+..    ...+++..+.+++|..+|.|-|++ .-+.-|+.|++.+..
T Consensus        33 ~~~~~l~~~~~~~~~~~~~~~~~~pg~~~~~H~H~~-~E~~~Vl~G~~~~~~   83 (147)
T 2f4p_A           33 VWVKMLVTDENGVFNTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQE   83 (147)
T ss_dssp             EEEEEEECCTTCSSSCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEE
T ss_pred             EEEEEEECCCCCCCcEEEEEEEECCCCccCceECCC-ceEEEEEeCEEEEEE
Confidence            55555665    357999999999999999999999 568889999998764

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=89.36  E-value=0.17  Score=38.45  Aligned_cols=47  Identities=11%  Similarity=0.027  Sum_probs=37.3

Q ss_pred             eeEEeee--cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           71 IKYLHLH--ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        71 i~y~~i~--e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      ++..-|.  +...|.+.+|.++||..+|+|-|+.... .-|+.|++.+..
T Consensus        31 ~~~~~L~~~~~~~~~~~~~~l~pG~~~~~H~H~~~E~-~~Vl~G~~~v~v   79 (156)
T 3kgz_A           31 VSRQLLFADPNLACEWRYFEVDEGGYSTLERHAHVHA-VMIHRGHGQCLV   79 (156)
T ss_dssp             EEEEEEECCTTCSEEEEEEEEEEEEECCCBBCSSCEE-EEEEEEEEEEEE
T ss_pred             eEEEEEEcCCCCcEEEEEEEECCCCccCceeCCCcEE-EEEEeCEEEEEE
Confidence            3444444  3467999999999999999999999864 569999999874

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A

Probab=89.29  E-value=0.12  Score=47.00  Aligned_cols=40  Identities=10%  Similarity=0.083  Sum_probs=36.5

Q ss_pred             ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031085           81 SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD  120 (166)
Q Consensus        81 ~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd  120 (166)
                      .+++..+.|+||+.+|+|.||+-+=+.-||.|++.+.-.+
T Consensus       366 gls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~  405 (493)
T 2d5f_A          366 GLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVN  405 (493)
T ss_dssp             TCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEEC
T ss_pred             ceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEc
Confidence            4899999999999999999999999999999999987654

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=89.02  E-value=0.11  Score=47.59  Aligned_cols=40  Identities=15%  Similarity=0.139  Sum_probs=36.5

Q ss_pred             ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031085           81 SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD  120 (166)
Q Consensus        81 ~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd  120 (166)
                      .+++..+.|+||+.+|+|.||+-+=+.-||.|++.+.-.+
T Consensus       371 ~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~  410 (510)
T 3c3v_A          371 GLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVD  410 (510)
T ss_dssp             TCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEEC
T ss_pred             eEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEe
Confidence            6899999999999999999999999999999999986543

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=88.93  E-value=0.3  Score=39.01  Aligned_cols=48  Identities=15%  Similarity=0.269  Sum_probs=37.7

Q ss_pred             CCeeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           69 APIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        69 ~pi~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      +.++...+.. ..-+|.+|.+++|+.+|.|.||+. -+.-||.|.+.+..
T Consensus        22 ~Gv~~~~l~~-~~~~~~~~~~~pg~~~~~H~H~~~-e~~~Vl~G~~~~~~   69 (243)
T 3h7j_A           22 NGVRQYSTVR-GDTEVLMSYVPPHTNVEPHQHKEV-QIGMVVSGELMMTV   69 (243)
T ss_dssp             TSCEEEEEEE-TTEEEEEEEECTTEEEEEECCSSE-EEEEEEESEEEEEE
T ss_pred             CCeEEEEEEC-CCCEEEEEEECCCCccCCEECCCc-EEEEEEEeEEEEEE
Confidence            4566665544 456899999999999999999965 46679999999764

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=88.87  E-value=0.13  Score=47.60  Aligned_cols=40  Identities=10%  Similarity=0.058  Sum_probs=37.2

Q ss_pred             ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031085           81 SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD  120 (166)
Q Consensus        81 ~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd  120 (166)
                      .+++...-|.+|+++|+|.||+-+-+.-|+.|+++|...+
T Consensus       393 giS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~  432 (531)
T 3fz3_A          393 RLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVN  432 (531)
T ss_dssp             TCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEEC
T ss_pred             ceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEe
Confidence            6799999999999999999999999999999999987765

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=88.57  E-value=0.19  Score=37.32  Aligned_cols=41  Identities=12%  Similarity=0.198  Sum_probs=35.3

Q ss_pred             CCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031085           79 CDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD  120 (166)
Q Consensus        79 ~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd  120 (166)
                      ...|++.++.+++|..+|.|-|+... +.-|+.|++.+..-+
T Consensus        38 ~~~~~~~~~~~~pg~~~~~H~H~~~E-~~~Vl~G~~~~~~~~   78 (163)
T 1lr5_A           38 MKEVEVWLQTISPGQRTPIHRHSCEE-VFTVLKGKGTLLMGS   78 (163)
T ss_dssp             CSSEEEEEEEECTTCBCCEEEESSCE-EEEEEECCEEEEECC
T ss_pred             CCcEEEEEEEECCCCcCCCeECCCCe-EEEEEeCEEEEEECC
Confidence            35799999999999999999999866 777999999987655

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=88.47  E-value=0.23  Score=39.68  Aligned_cols=41  Identities=17%  Similarity=0.257  Sum_probs=33.9

Q ss_pred             ecCCceEEEEEEcCC-CCcccCCCCCCChhhhhhhccceEEEE
Q 031085           77 HECDSFSIGIFCMPP-SSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        77 ~e~~~fs~~iF~lp~-g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      +....|.+.+..++| |+.+|+|.|++.. +.-||.|++.+..
T Consensus       140 ~~~~~~~~~~~~~~p~g~~~~~H~H~~~e-~~~Vl~G~~~~~i  181 (243)
T 3h7j_A          140 FVEDWVEIMLAKIPGNGGEMPFHKHRNEQ-IGICIGGGYDMTV  181 (243)
T ss_dssp             EEETTEEEEEEEECTTTEEEEEECCSSEE-EEEECSSCEEEEE
T ss_pred             eccceeEEEEEEECCCCCcCCCEeCCCcE-EEEEEECEEEEEE
Confidence            345667888888999 9999999999864 5679999999865

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=88.38  E-value=0.14  Score=36.08  Aligned_cols=44  Identities=14%  Similarity=0.234  Sum_probs=36.8

Q ss_pred             eeecCCceEEEEEEcCCCCccc-CCCCCCChhhhhhhccceEEEE
Q 031085           75 HLHECDSFSIGIFCMPPSSMIP-LHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        75 ~i~e~~~fs~~iF~lp~g~~IP-LHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      .....+.+.+.++.+++|..+| .|-|++...+.-|+.|++.+.-
T Consensus        19 ~~~~~~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i   63 (125)
T 3cew_A           19 DSLALTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI   63 (125)
T ss_dssp             HHHTCSSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE
T ss_pred             cccCCCCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE
Confidence            3445788999999999999999 9999988766678999998754

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=88.01  E-value=0.18  Score=41.94  Aligned_cols=39  Identities=18%  Similarity=0.408  Sum_probs=35.3

Q ss_pred             ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEe
Q 031085           81 SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSY  119 (166)
Q Consensus        81 ~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Sy  119 (166)
                      .+++.+..++||+.+|.|-||+..-+.-||.|++.+.-+
T Consensus       233 ~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~  271 (361)
T 2vqa_A          233 NMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVF  271 (361)
T ss_dssp             TCEEEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEE
T ss_pred             cceEEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEE
Confidence            689999999999999999999988888899999998753

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=87.47  E-value=0.19  Score=35.08  Aligned_cols=40  Identities=15%  Similarity=0.081  Sum_probs=36.1

Q ss_pred             CCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           79 CDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        79 ~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      .-+.|+.---|.+|+.+|-|-||.-+-+.-|+.|++.|.-
T Consensus        33 ~lgls~~r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~   72 (79)
T 1dgw_X           33 DLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVEL   72 (79)
T ss_dssp             TTTEEEEEEEECTTCEEEEEEESSCEEEEEEEESCEEEEE
T ss_pred             cCCcceEEEEEcCCcCcCCccCCCCcEEEEEEeceEEEEE
Confidence            4577888888899999999999999999999999999864

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=86.38  E-value=0.26  Score=35.65  Aligned_cols=39  Identities=21%  Similarity=0.315  Sum_probs=33.7

Q ss_pred             CceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           80 DSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        80 ~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      ..+.+..+.++||+.+|.|-|++..-+.-||.|++.+..
T Consensus        55 ~~~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i   93 (133)
T 1o4t_A           55 KARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD   93 (133)
T ss_dssp             SEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE
T ss_pred             ceEEEEEEEECCCCccCceECCCccEEEEEEeCEEEEEE
Confidence            346778889999999999999998888889999998753

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=85.94  E-value=0.23  Score=39.92  Aligned_cols=47  Identities=9%  Similarity=0.022  Sum_probs=38.5

Q ss_pred             eeEEeeec---CCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEE
Q 031085           71 IKYLHLHE---CDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVK  117 (166)
Q Consensus        71 i~y~~i~e---~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~  117 (166)
                      +.+..+..   ...+.+.++.++||+.+|.|-|+++.=+.-||.|++.+.
T Consensus       165 ~~~~~l~~~~~~~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~  214 (261)
T 1rc6_A          165 VILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYN  214 (261)
T ss_dssp             CEEEECSCCSTTCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEE
T ss_pred             eEEEEecCcccCCceEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEE
Confidence            44444443   346888999999999999999998888899999999976

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=84.85  E-value=0.21  Score=44.35  Aligned_cols=38  Identities=16%  Similarity=0.299  Sum_probs=35.5

Q ss_pred             ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEe
Q 031085           81 SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSY  119 (166)
Q Consensus        81 ~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Sy  119 (166)
                      ++++..+.|+||+.+|.| ||+..-+.-||.|++.+...
T Consensus        60 ~~s~~~~~l~PGg~~~pH-h~~a~Ei~yVl~G~g~v~~v   97 (434)
T 2ea7_A           60 NYRVVEFKSKPNTLLLPH-HADADFLLVVLNGTAVLTLV   97 (434)
T ss_dssp             TCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEE
T ss_pred             cEEEEEEEecCCcCccCc-cCCCceEEEEEecEEEEEEE
Confidence            399999999999999999 99999999999999998764

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=84.16  E-value=0.45  Score=38.68  Aligned_cols=49  Identities=18%  Similarity=0.154  Sum_probs=40.0

Q ss_pred             CeeEEeee----cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           70 PIKYLHLH----ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        70 pi~y~~i~----e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      ...|..+.    ....|++.++.+++|..+|+|-|++..-+.-||.|++.+..
T Consensus        30 g~~~~~l~~~~~~~~~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~   82 (337)
T 1y3t_A           30 RQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL   82 (337)
T ss_dssp             TEEEEEEECHHHHTSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE
T ss_pred             CeEEEEEeecCCCCCeEEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE
Confidence            34455554    35789999999999999999999977778889999999874

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=83.49  E-value=0.41  Score=40.33  Aligned_cols=39  Identities=18%  Similarity=0.381  Sum_probs=34.6

Q ss_pred             ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEe
Q 031085           81 SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSY  119 (166)
Q Consensus        81 ~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Sy  119 (166)
                      .|++.+..++||+.++.|-|++..-+.-||.|++.+.-.
T Consensus       256 ~~~~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~  294 (385)
T 1j58_A          256 TIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVF  294 (385)
T ss_dssp             SCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEE
T ss_pred             ceEEEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEE
Confidence            689999999999999999999977888899999987643

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=83.28  E-value=0.33  Score=44.33  Aligned_cols=40  Identities=10%  Similarity=0.077  Sum_probs=36.3

Q ss_pred             ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031085           81 SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD  120 (166)
Q Consensus        81 ~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd  120 (166)
                      .+++..--|.+|+++|+|.||.-+-+.-|+.|+++|.-.+
T Consensus       357 giS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~  396 (496)
T 3ksc_A          357 KLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVN  396 (496)
T ss_dssp             TCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEEC
T ss_pred             ceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEe
Confidence            3578888889999999999999999999999999998765

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=83.04  E-value=0.3  Score=44.27  Aligned_cols=40  Identities=13%  Similarity=0.086  Sum_probs=36.8

Q ss_pred             ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031085           81 SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD  120 (166)
Q Consensus        81 ~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd  120 (166)
                      .+++..--|.+|+++|+|.||.-+-+.-|+.|+++|.-.+
T Consensus       322 giS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~  361 (466)
T 3kgl_A          322 RLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVN  361 (466)
T ss_dssp             TCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEEC
T ss_pred             ceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEe
Confidence            6788888889999999999999999999999999998765

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=82.51  E-value=0.31  Score=42.94  Aligned_cols=38  Identities=18%  Similarity=0.276  Sum_probs=35.4

Q ss_pred             ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEe
Q 031085           81 SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSY  119 (166)
Q Consensus        81 ~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Sy  119 (166)
                      ++++..+.|+||+.+|.| |++-.-+.-||.|++.+...
T Consensus        48 ~~s~~~~~l~PGg~~~pH-h~~a~E~~yVl~G~g~v~~v   85 (416)
T 1uij_A           48 DYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLV   85 (416)
T ss_dssp             TCEEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEE
T ss_pred             cEEEEEEEeccCcCcccc-cCCCceEEEEEeeEEEEEEE
Confidence            499999999999999999 99999999999999998754

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=82.47  E-value=0.42  Score=43.29  Aligned_cols=40  Identities=13%  Similarity=0.074  Sum_probs=36.5

Q ss_pred             ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031085           81 SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD  120 (166)
Q Consensus        81 ~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd  120 (166)
                      .+++..--|.+|+++|+|.||.-+-+.-|+.|+++|.-++
T Consensus       322 giS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~  361 (465)
T 3qac_A          322 RLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVN  361 (465)
T ss_dssp             TCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEEC
T ss_pred             ceeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEe
Confidence            4688888899999999999999999999999999997765

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=82.44  E-value=0.74  Score=37.94  Aligned_cols=39  Identities=15%  Similarity=0.221  Sum_probs=32.1

Q ss_pred             CceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           80 DSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        80 ~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      .+|.|.+|.|+||+.||.|-|.+|.=..-||.|++.+.-
T Consensus       189 ~~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~  227 (278)
T 1sq4_A          189 HDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL  227 (278)
T ss_dssp             CSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE
T ss_pred             CCeEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE
Confidence            479999999999999999666666555688999998653

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=81.88  E-value=11  Score=28.21  Aligned_cols=87  Identities=13%  Similarity=-0.036  Sum_probs=55.7

Q ss_pred             CCCCHHHHHHHHHHhccCCccCCCCchhh-hcccCCCCCCccCCCCCCCCCCeeEEeeec---CCceEEEEEEcCCCCcc
Q 031085           20 GPVTDEALERVRAMLDKIKPSDVGLEQEA-QLVRNWPGPVLERNGRHPSLAPIKYLHLHE---CDSFSIGIFCMPPSSMI   95 (166)
Q Consensus        20 ~~ps~~~l~kL~~lLd~Itp~DvgLd~~~-~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e---~~~fs~~iF~lp~g~~I   95 (166)
                      ..|+.+.+.+|...++ +++++|=-.++. .....+          ......+.|..+..   ...|.+..+.+++|...
T Consensus        49 ~~p~~~~l~~ia~~l~-v~~~~l~~~~~~~~~~~~~----------~~~~~g~~~~~l~~~~~~~~~~~~~~~~~pg~~~  117 (192)
T 1y9q_A           49 SSPTIATLWKIASGLE-ASFSAFFANDPQLLSSERS----------FPDDLNMKIHTLFPYAADTGLEIFEITLLDHHQQ  117 (192)
T ss_dssp             SCCCHHHHHHHHHHHT-CCSGGGGTTSTHHHHHCCB----------CTTCTTEEEEEEEEEETTTTEEEEEEEECTTCEE
T ss_pred             CCCCHHHHHHHHHHHC-cCHHHHcCCCCCCCccceE----------EeCCCCEEEEEeccCCCCCcEEEEEEEECCCCCc
Confidence            4688889999988885 566665332222 111111          01123455655553   67888889999999998


Q ss_pred             c--CCCCCCChhhhhhhccceEEEE
Q 031085           96 P--LHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        96 P--LHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      +  .|-|++ .-+.-||.|++.+..
T Consensus       118 ~~~~H~h~~-~E~~~Vl~G~~~~~~  141 (192)
T 1y9q_A          118 MSSPHALGV-IEYIHVLEGIMKVFF  141 (192)
T ss_dssp             EECCCSTTC-EEEEEEEESCEEEEE
T ss_pred             cCCCCCCCC-EEEEEEEEeEEEEEE
Confidence            7  666654 456678999998754

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=81.05  E-value=0.93  Score=35.14  Aligned_cols=40  Identities=10%  Similarity=0.049  Sum_probs=33.9

Q ss_pred             CceEEEEEEcCCCCc------ccCCCCC--CChhhhhhhccceEEEEe
Q 031085           80 DSFSIGIFCMPPSSM------IPLHNHP--GMTVLSKLVYGSLHVKSY  119 (166)
Q Consensus        80 ~~fs~~iF~lp~g~~------IPLHDHP--gMtv~sKvL~Gs~~v~Sy  119 (166)
                      ..+.+++..++||..      .|.|-|+  +..=+.-||.|++.+.-=
T Consensus        65 ~~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~  112 (190)
T 1x82_A           65 GDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQ  112 (190)
T ss_dssp             TCEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEE
T ss_pred             CCeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEc
Confidence            478899999999999      8999999  556788899999987653

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=80.83  E-value=0.87  Score=36.93  Aligned_cols=46  Identities=17%  Similarity=0.197  Sum_probs=35.2

Q ss_pred             CCeeEEeeecCC---ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceE
Q 031085           69 APIKYLHLHECD---SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLH  115 (166)
Q Consensus        69 ~pi~y~~i~e~~---~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~  115 (166)
                      +.+....++.++   ...+.+.-++||+.+|.|.|||-- ..-||.|+..
T Consensus        27 ~Gv~~~~L~~~~~e~g~~~~lvr~~pG~~~p~H~H~g~E-e~~VL~G~f~   75 (223)
T 3o14_A           27 KGVERRMLDRIGGEVARATSIVRYAPGSRFSAHTHDGGE-EFIVLDGVFQ   75 (223)
T ss_dssp             TTEEEEEEEEESSSSCEEEEEEEECTTEECCCEECTTCE-EEEEEEEEEE
T ss_pred             CCEEEEEeecCCCccccEEEEEEECCCCCcccccCCCCE-EEEEEEeEEE
Confidence            568888887643   235677888999999999999854 4567888875

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=80.14  E-value=0.6  Score=39.27  Aligned_cols=40  Identities=23%  Similarity=0.361  Sum_probs=35.2

Q ss_pred             CceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031085           80 DSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD  120 (166)
Q Consensus        80 ~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd  120 (166)
                      +.+++....+++|+.+|+|-|+ ..-+.-|+.|++.+...|
T Consensus        77 ~~~~~~~~~l~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~  116 (385)
T 1j58_A           77 ENLASVNMRLKPGAIRELHWHK-EAEWAYMIYGSARVTIVD  116 (385)
T ss_dssp             SSCEEEEEEECTTCEEEEEEES-SCEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEEECCCCCCCCccCC-hheEEEEEeeeEEEEEEe
Confidence            4789999999999999999999 578888999999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	166
d3elna1	186	b.82.1.19 (A:5-190) Cysteine dioxygenase type I {R	2e-10
d2gm6a1	192	b.82.1.19 (A:11-202) Cysteine dioxygenase type I {	3e-05

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]} Length = 186

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

 Score = 54.6 bits (131), Expect = 2e-10
 Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 22/149 (14%)

Query: 2   PYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLER 61
           P  +  L       F+ +    +  +E V+A+L+  + +       A+           R
Sbjct: 5   PRTLADLIRILHELFAGD----EVNVEEVQAVLEAYESNPAEWALYAK-------FDQYR 53

Query: 62  NGRHPSLAPIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDW 121
             R+        L       F++ I C        +H+H       KL+ G+L    +DW
Sbjct: 54  YTRN--------LVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDW 105

Query: 122 LDLPEPEDPLQGVFFWHILCPSSIDFLNP 150
            D    E   +       L  +   ++N 
Sbjct: 106 PDKKSNEMIKKSE---RTLRENQCAYIND 131

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]} Length = 192

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

 Score = 40.0 bits (93), Expect = 3e-05
 Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 9/131 (6%)

Query: 24  DEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKY----LHLHEC 79
            E +  + A+LD+       L +   L+                  P  Y    LH    
Sbjct: 6   REFITGLSALLDEQPGEARILREGGALLARLVARDDWLPDAFAQPHPEYYQQMLLHCDSA 65

Query: 80  DSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLPEPEDPLQGVFFWHI 139
           + FSI  F   P    P+H+H    ++  L  G+ + + +       P    +       
Sbjct: 66  ERFSIVSFVWGPGQRTPIHDHTVWGLIGMLR-GAEYSQPFVLDGSGRPVLHGEP----TR 120

Query: 140 LCPSSIDFLNP 150
           L P  ++ ++P
Sbjct: 121 LEPGHVEAVSP 131

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	166
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	99.41
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	98.06
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	97.74
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	96.78
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	96.48
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	95.3
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	93.89
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	90.1
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	89.93
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	89.39
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	88.85
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	87.92
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	87.43
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	86.34
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	84.99
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	84.27
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	83.35

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=99.41  E-value=1.7e-13  Score=107.67  Aligned_cols=104  Identities=18%  Similarity=0.314  Sum_probs=77.6

Q ss_pred             ChHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHhccCCccCCCCchhhhcccCCCCCCccCCCCCCCCCCeeEEeeec-CC
Q 031085            2 PYYIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHE-CD   80 (166)
Q Consensus         2 ~~~IQrL~~~c~~tFs~~~~ps~~~l~kL~~lLd~Itp~DvgLd~~~~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e-~~   80 (166)
                      |+.+|.|++.+++.|.....    ++++|+++|.+.....-.+..    +..+            ....-+..-||+ ++
T Consensus         5 p~~l~~Li~~l~~~~~~~~~----~i~~v~~ll~~~~~~~~~w~~----~~~~------------~~~~Y~R~li~~~~~   64 (186)
T d3elna1           5 PRTLADLIRILHELFAGDEV----NVEEVQAVLEAYESNPAEWAL----YAKF------------DQYRYTRNLVDQGNG   64 (186)
T ss_dssp             CSSHHHHHHHHHHHTSSSSC----CHHHHHHHHHHSCCCHHHHGG----GCCC------------CSSSCEEEEEECGGG
T ss_pred             HHHHHHHHHHHHHHhhccCC----CHHHHHHHHHHccCCHHHHHH----hccc------------CccccEEEEEEcCCC
Confidence            45689999999999975432    478888888887543111211    1111            011234455665 67


Q ss_pred             ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEeeccCCC
Q 031085           81 SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDLP  125 (166)
Q Consensus        81 ~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~v~~~  125 (166)
                      +|+|.++|.+||...|+|||+||.++.|||.|.++.+.|+|.+..
T Consensus        65 ~fel~li~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~  109 (186)
T d3elna1          65 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKK  109 (186)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSS
T ss_pred             CeEEEEEEccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCC
Confidence            899999999999999999999999999999999999999998653

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=98.06  E-value=6.5e-06  Score=64.13  Aligned_cols=104  Identities=19%  Similarity=0.236  Sum_probs=72.1

Q ss_pred             HHHHHHHHHhhhcCCCCCCCHHHHHHHHHHhccCCccCCCCchhhhcccCCCCCCccCCCCCCCCCCeeEEeeec--CCc
Q 031085            4 YIQRLYNTCRAAFSPEGPVTDEALERVRAMLDKIKPSDVGLEQEAQLVRNWPGPVLERNGRHPSLAPIKYLHLHE--CDS   81 (166)
Q Consensus         4 ~IQrL~~~c~~tFs~~~~ps~~~l~kL~~lLd~Itp~DvgLd~~~~~~~~~~~~~~~~~g~~~~~~pi~y~~i~e--~~~   81 (166)
                      .++++...+++.+... .-..+.+++|+.+|.++-..+=-|.....   .            ......+..-||+  ++.
T Consensus         4 ~L~~fi~~i~~ll~~~-~~~~~~l~~v~~ll~~l~~~~~wl~~~~~---~------------~~~~~y~r~lLy~d~~~~   67 (192)
T d2gm6a1           4 PLREFITGLSALLDEQ-PGEARILREGGALLARLVARDDWLPDAFA---Q------------PHPEYYQQMLLHCDSAER   67 (192)
T ss_dssp             HHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHSCCSCCGGGS---C------------CCSSSCEEEEEEECTTSS
T ss_pred             HHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHcChhhhhhhhc---C------------CCCCceEEEEEEECCCCC
Confidence            4889999999988632 22245678888888876544322321111   0            0112233444887  456


Q ss_pred             eEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEeeccCC
Q 031085           82 FSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDWLDL  124 (166)
Q Consensus        82 fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~v~~  124 (166)
                      |+|-+.|.+||...|.|||++= +..+||.|.++.+-|.+.+.
T Consensus        68 f~i~~i~W~pG~~tpiHdH~~w-~~~~vl~G~l~e~~y~~~~~  109 (192)
T d2gm6a1          68 FSIVSFVWGPGQRTPIHDHTVW-GLIGMLRGAEYSQPFVLDGS  109 (192)
T ss_dssp             CEEEEEEECTTCBCCSBCCSSC-EEEEEEESCEEEEEEEECTT
T ss_pred             EEEEEEecCCCCCCCCCCCCCc-eEEEEEcCeEEEEEeeeCCC
Confidence            9999999999999999999754 66789999999999998643

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=97.74  E-value=9.4e-06  Score=55.16  Aligned_cols=48  Identities=13%  Similarity=0.297  Sum_probs=43.5

Q ss_pred             eeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           71 IKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        71 i~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      +.-..+++.++|.+.++.++||+.+|+|.||+...+..||.|++.+..
T Consensus        17 ~~~~~l~~~~~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~   64 (105)
T d1v70a_          17 MAKIPVFQSERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV   64 (105)
T ss_dssp             CEEEEEEEETTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE
T ss_pred             eEEEeeEECCCEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEE
Confidence            456778999999999999999999999999999888899999998763

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.78  E-value=0.00053  Score=47.63  Aligned_cols=47  Identities=17%  Similarity=0.323  Sum_probs=41.2

Q ss_pred             eeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           71 IKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        71 i~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      +.-..+++.+.+++.+|.|++|..+|.|.||+ ..+.-||.|++.+..
T Consensus        26 ~~~~~l~~~~~~~i~~~~~~~G~~~~~H~h~~-~~~~~vl~G~~~~~~   72 (112)
T d1yhfa1          26 MLSRTLVQRQDLGITVFSLDKGQEIGRHSSPG-DAMVTILSGLAEITI   72 (112)
T ss_dssp             EEEEEEEEETTEEEEEEEECTTCEEEEECCSS-EEEEEEEESEEEEEE
T ss_pred             EEEEEEEECCCcEEEEEEECCCCCcceEECCC-CEEEEEEeCEEEEEE
Confidence            44456788999999999999999999999997 778899999999754

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.48  E-value=0.0011  Score=46.22  Aligned_cols=47  Identities=15%  Similarity=0.206  Sum_probs=41.6

Q ss_pred             eeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           71 IKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        71 i~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      ...-.+.+.+++++..+.|+||..+|.|-|+ ...+.-||.|++.+.-
T Consensus        15 ~~~~~l~~~~~~~v~~~~l~pG~~~p~H~H~-~~e~~~Vl~G~~~~~v   61 (108)
T d2b8ma1          15 KVVEKLVNTEHVQINHIVLPRGEQMPKHYSN-SYVHLIIIKGEMTLTL   61 (108)
T ss_dssp             CEEEEEEECSSCEEEEEEEETTCBCCCEECS-SCEEEEEEESEEEEEE
T ss_pred             eEEEEEEcCCCEEEEEEEECCCCcChhhccc-ccEEEEEEeeeEEEEE
Confidence            4566788999999999999999999999998 5677889999999864

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=95.30  E-value=0.002  Score=44.55  Aligned_cols=47  Identities=23%  Similarity=0.427  Sum_probs=37.5

Q ss_pred             eeEEeee---cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           71 IKYLHLH---ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        71 i~y~~i~---e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      +.+..+.   +..+|.|..+.++||+.+|.|-|+....+ -||.|++.+.-
T Consensus        22 ~~~~~l~~~~~~~~~~~~~~~i~pG~~~~~H~H~~~e~~-~vl~G~~~~~~   71 (114)
T d1vj2a_          22 VRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEI-FVLKGKLTVLK   71 (114)
T ss_dssp             EEEEEEECTTTCSSEEEEEEEEEEEEEEEEECCSSCEEE-EEEESEEEEEC
T ss_pred             EEEEEEeCCCCCCceEEEEEEECCCCCCCceECCCcEEE-EEEEceeEEEE
Confidence            4444444   34579999999999999999999998765 59999998753

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=93.89  E-value=0.0092  Score=41.18  Aligned_cols=38  Identities=21%  Similarity=0.319  Sum_probs=32.6

Q ss_pred             ceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           81 SFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        81 ~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      .+.++...++||+..|+|-|+++.=+.-|+.|++.+.-
T Consensus        38 ~~~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~   75 (115)
T d1o4ta_          38 ARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD   75 (115)
T ss_dssp             EEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE
T ss_pred             cEEEEEEEECCCCCcCCEECCCCcEEEEEEECcceEEE
Confidence            35567778999999999999999888889999998764

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=90.10  E-value=0.11  Score=37.73  Aligned_cols=52  Identities=10%  Similarity=0.187  Sum_probs=43.3

Q ss_pred             CCCeeEEeee-----cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031085           68 LAPIKYLHLH-----ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD  120 (166)
Q Consensus        68 ~~pi~y~~i~-----e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd  120 (166)
                      .+.+.|..+.     ..+.+++.+..++||+..|+|-|++ .-+.-||.|++.+.-.+
T Consensus        22 ~~g~~~~~~~~~~~~g~~~i~v~~~~l~PG~~~~~H~H~~-~e~~~Vl~G~g~~~i~~   78 (160)
T d1lr5a_          22 IEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSC-EEVFTVLKGKGTLLMGS   78 (160)
T ss_dssp             CTTEEEEEEECHHHHCCSSEEEEEEEECTTCBCCEEEESS-CEEEEEEECCEEEEECC
T ss_pred             CCCceEEEeecccCCCccEEEEEEEEECCCccccceeccc-cEEEEEEeeeEEEEECC
Confidence            5668888876     3578999999999999999999976 56788999999987654

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=89.93  E-value=0.063  Score=44.84  Aligned_cols=41  Identities=17%  Similarity=0.364  Sum_probs=36.9

Q ss_pred             CceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031085           80 DSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD  120 (166)
Q Consensus        80 ~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd  120 (166)
                      .++++++..|+||+..++|.||+-+-+.-|+.|++++.-++
T Consensus       248 ~~is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~  288 (372)
T d1j58a_         248 KTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFA  288 (372)
T ss_dssp             CSCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEE
T ss_pred             CceeEEEEEECCCcccCCCCCCCCcEEEEEEECeEEEEEEc
Confidence            36899999999999999999999999999999999886543

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=89.39  E-value=0.078  Score=38.35  Aligned_cols=38  Identities=16%  Similarity=0.172  Sum_probs=33.4

Q ss_pred             CceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           80 DSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        80 ~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      .+++++..-++||+..++|-||.- -+.-||.|++.+.-
T Consensus        33 ~~~~~~~vtf~PG~~~~~H~H~~~-q~~~Vl~G~~~~~~   70 (134)
T d2f4pa1          33 FNTQVYDVVFEPGARTHWHSHPGG-QILIVTRGKGFYQE   70 (134)
T ss_dssp             SSCEEEEEEECTTCEECSEECTTC-EEEEEEEEEEEEEE
T ss_pred             ceeEEEEEEECCCCcCccccCCCC-EEEEEEeCEEEEEE
Confidence            579999999999999999999986 56799999987654

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=87.92  E-value=0.078  Score=40.78  Aligned_cols=44  Identities=23%  Similarity=0.257  Sum_probs=39.3

Q ss_pred             cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEeec
Q 031085           78 ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDW  121 (166)
Q Consensus        78 e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~  121 (166)
                      ..-..|+.---|.||+.+|.|.||+-+-+.-|+.|++.+.-.+-
T Consensus        68 n~lglS~~rv~l~pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~  111 (201)
T d2et1a1          68 NTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGS  111 (201)
T ss_dssp             TTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEEECC
T ss_pred             cccceeEEEEEECCCCCcCCcccCCCCEEEEEEcceEEEEEEec
Confidence            45679999999999999999999999999999999999876543

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=87.43  E-value=0.068  Score=42.52  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=32.9

Q ss_pred             cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEE
Q 031085           78 ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVK  117 (166)
Q Consensus        78 e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~  117 (166)
                      ....|.+++..|+||..+|+|-|+.-.++ =||.|+..+.
T Consensus        50 ~~~~l~~~~~~l~PG~~~~~H~H~~~e~~-~vl~G~g~~t   88 (308)
T d2d40a1          50 ITATLYAGLQLIMPGEVAPSHRHNQSALR-FIVEGKGAFT   88 (308)
T ss_dssp             SSSSCEEEEEEECTTCEEEEEEESSCEEE-EEEECSSCEE
T ss_pred             cCccceeeeEEECCCCccccccCchhheE-EEEEeeEEEE
Confidence            34578899999999999999999987766 4999998653

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=86.34  E-value=0.11  Score=38.74  Aligned_cols=42  Identities=10%  Similarity=0.039  Sum_probs=37.9

Q ss_pred             cCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEe
Q 031085           78 ECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSY  119 (166)
Q Consensus        78 e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Sy  119 (166)
                      ..-++++..-.|.||+..+.|.||.-+-+.-|+.|++++.-.
T Consensus        38 ~~~~~s~~~~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v   79 (174)
T d1fxza2          38 SWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVV   79 (174)
T ss_dssp             TTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEE
T ss_pred             hhcCceEEEeeecCCCEeCCccCCCCCEEEEEEecceEEEEe
Confidence            355789999999999999999999999999999999998754

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=84.99  E-value=0.13  Score=36.98  Aligned_cols=50  Identities=26%  Similarity=0.194  Sum_probs=38.8

Q ss_pred             eeEEeeecCCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEeec
Q 031085           71 IKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYDW  121 (166)
Q Consensus        71 i~y~~i~e~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd~  121 (166)
                      +..+.+-+.......++-+++|+++|.|.|++= ...=||.|++++.-.+|
T Consensus        32 ~k~L~~d~~tg~~~~l~r~~~G~~~p~H~H~~~-e~~~VL~G~l~~~~g~~   81 (144)
T d2o1qa1          32 WKLLHVSPEMGSWTAIFDCPAGSSFAAHVHVGP-GEYFLTKGKMDVRGGKA   81 (144)
T ss_dssp             EEEEEEETTTTEEEEEEEECTTEEECCEEESSC-EEEEEEEEEEEETTCGG
T ss_pred             EEEeeeCCCCCcEEEEEEeCCCcCcCCCccccC-EEEEEEEEEEEecCCCc
Confidence            445555566677888999999999999999976 44689999998754433

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=84.27  E-value=0.16  Score=37.82  Aligned_cols=42  Identities=10%  Similarity=0.025  Sum_probs=37.5

Q ss_pred             CCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEEee
Q 031085           79 CDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKSYD  120 (166)
Q Consensus        79 ~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~Syd  120 (166)
                      .-.+|+..--|.||+.++.|.||.-+-+.-|+.|++++.-.+
T Consensus        44 ~lgls~~~v~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~   85 (173)
T d1od5a2          44 QFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVN   85 (173)
T ss_dssp             HHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEEC
T ss_pred             hccceEEEEEEcCCcEecCccCCCCcEEEEEEecceEEEEEe
Confidence            346799999999999999999999999999999999987554

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=83.35  E-value=0.26  Score=39.05  Aligned_cols=40  Identities=23%  Similarity=0.255  Sum_probs=35.2

Q ss_pred             CCceEEEEEEcCCCCcccCCCCCCChhhhhhhccceEEEE
Q 031085           79 CDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSLHVKS  118 (166)
Q Consensus        79 ~~~fs~~iF~lp~g~~IPLHDHPgMtv~sKvL~Gs~~v~S  118 (166)
                      ...|++..+.++||+..|+|-|++..=+.-||.|++.+..
T Consensus        39 ~~~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~   78 (330)
T d1y3ta1          39 GDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL   78 (330)
T ss_dssp             TSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE
T ss_pred             CCcEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEEE
Confidence            4679999999999999999999987666788999999874