Query 031086
Match_columns 166
No_of_seqs 114 out of 1056
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 14:13:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_J 60S ribosomal protein L 100.0 3E-71 1E-75 441.9 10.7 165 1-166 1-166 (166)
2 2zkr_i 60S ribosomal protein L 100.0 5.9E-71 2E-75 439.9 5.9 165 1-166 1-165 (165)
3 1vq8_I 50S ribosomal protein L 100.0 2.7E-65 9.4E-70 406.3 7.1 149 11-162 3-153 (162)
4 3j21_H 50S ribosomal protein L 100.0 1.1E-64 3.7E-69 403.5 2.6 151 11-164 4-157 (164)
5 1mms_A Protein (ribosomal prot 100.0 2.9E-61 9.8E-66 375.4 14.0 137 7-146 2-140 (140)
6 3bbo_K Ribosomal protein L11; 100.0 2.6E-61 8.9E-66 398.2 13.5 152 1-155 66-221 (224)
7 2ftc_G L11MT, MRP-L11, 39S rib 100.0 1.3E-59 4.5E-64 367.9 15.1 136 8-146 3-145 (145)
8 3egv_B 50S ribosomal protein L 100.0 6.9E-61 2.4E-65 375.5 7.7 141 7-150 1-143 (146)
9 3r8s_I 50S ribosomal protein L 100.0 7.9E-61 2.7E-65 373.3 -10.3 137 7-146 2-141 (141)
10 1wib_A 60S ribosomal protein L 100.0 1.8E-39 6.3E-44 236.8 4.0 86 1-87 7-92 (92)
11 3cjs_B 50S ribosomal protein L 100.0 4.2E-33 1.4E-37 195.1 7.6 69 7-76 2-72 (72)
12 1hc8_A Ribosomal protein L11; 100.0 6.2E-32 2.1E-36 190.9 5.4 75 70-146 1-76 (76)
13 1qa6_A Ribosomal protein L11; 99.9 3.8E-28 1.3E-32 167.8 3.9 66 75-142 2-67 (67)
14 1t3u_A Conserved hypothetical 33.4 23 0.00077 24.7 2.2 28 60-87 6-33 (104)
15 2k87_A Non-structural protein 27.0 52 0.0018 24.2 3.2 33 40-74 30-64 (116)
16 1win_A Flotillin 2; BAND 7 dom 25.9 8.7 0.0003 28.2 -1.2 49 101-158 79-134 (143)
17 2xzm_U Ribosomal protein L7AE 24.0 28 0.00096 25.4 1.3 37 123-161 5-41 (126)
18 3d3c_J 30S ribosomal protein S 21.8 5.7 0.0002 27.7 -2.8 31 116-146 13-43 (87)
19 2vqe_J 30S ribosomal protein S 21.2 19 0.00064 25.5 -0.2 29 118-146 8-36 (105)
No 1
>3iz5_J 60S ribosomal protein L12 (L11P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_J
Probab=100.00 E-value=3e-71 Score=441.92 Aligned_cols=165 Identities=88% Similarity=1.306 Sum_probs=125.5
Q ss_pred CCCCCCCCceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhc-ccCCceeEEEEEEecCceEEEEeCCHH
Q 031086 1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK-DWKGLRVTVKLTVQNRQAKVAVVPSAA 79 (166)
Q Consensus 1 m~~k~~~~~~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~fck~fN~~T~~-~~~g~~vpV~Itv~drsf~~~v~Ppts 79 (166)
||||||++++++|+|+|+||+|+|+|||||+|||+|||+|+||++||++| + +|+|++|||+|||+||||+|+++||+|
T Consensus 1 m~~k~dp~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T-~~~~~G~~IpV~itV~dRsf~f~v~Ppas 79 (166)
T 3iz5_J 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKET-AKDWKGLRVTVKLTVQNRQAKVSVVPSAA 79 (166)
T ss_dssp -----------CEEEEECTTCCCCHHHHSTTCCTTTSCSSSHHHHHHHHH-CSSCSCSCEEEEEEEETTEEEEECTTTTH
T ss_pred CCCCCCCCceEEEEEEEecCcccCCCCcchhhccCCCCHHHHHHHHHHHh-cccCCCCeEeEEEEEcCCeEEEEEcCcHH
Confidence 99999999999999999999999999999999999999999999999999 8 999999999999999999999999999
Q ss_pred HHHHHHhCCCCcCccCccCcceeEeeeHHHHHHHHHHhcccCCCCChhhhhhhhhhcccceeeEecCCChHhHHHhhhCc
Q 031086 80 ALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 159 (166)
Q Consensus 80 ~llkka~g~~~~~~~~~~~~~~~G~itl~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~~~p~e~~~~i~~G 159 (166)
|||+||||+++|++++++|++|+|+||++||||||+.|++||++.+|+++||+|+||||||||+|+|++|+|++++||+|
T Consensus 80 ~Ll~Ka~g~~~gs~~~~k~i~~vG~it~~qi~eIA~~K~~dl~a~~l~~avk~IlGTArSmGi~V~g~~p~~v~~~i~~G 159 (166)
T 3iz5_J 80 ALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDG 159 (166)
T ss_dssp HHHHHHHTCCSCCSSTTTSCSSCCCCCHHHHHHHHHHHTTTSCCSCHHHHHHHHHHHSCC--------------------
T ss_pred HHHHHhcCCCCCCCCCCCccceeeEEeHHHHHHHHHHHHhhhcccCHHHHHHHhHheeeeeeEEEecCCHHHHHHHHhCC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCC
Q 031086 160 DVEIPLD 166 (166)
Q Consensus 160 ~~~~~~~ 166 (166)
+|+||+.
T Consensus 160 ~~~~~~~ 166 (166)
T 3iz5_J 160 EVEIPSA 166 (166)
T ss_dssp -------
T ss_pred CEeCCCC
Confidence 9999973
No 2
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K 1s1i_K
Probab=100.00 E-value=5.9e-71 Score=439.92 Aligned_cols=165 Identities=69% Similarity=1.131 Sum_probs=70.4
Q ss_pred CCCCCCCCceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhcccCCceeEEEEEEecCceEEEEeCCHHH
Q 031086 1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAA 80 (166)
Q Consensus 1 m~~k~~~~~~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~fck~fN~~T~~~~~g~~vpV~Itv~drsf~~~v~Ppts~ 80 (166)
||||||++++++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++| ++|+|++|||+|||.||||+|+++||+||
T Consensus 1 m~~k~~~~~~~~ikL~v~aG~A~p~PplGPaLG~~Gvni~~fck~fN~~T-~~~~G~~ipV~Itv~drsf~f~vtPpas~ 79 (165)
T 2zkr_i 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKAT-GDWKGLRITVKLTIQNRQAQIEVVPSASA 79 (165)
T ss_dssp -----------------------------------------------------------------------CCCCCCHHH
T ss_pred CCCCCCCCeeEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEcCCeeeEEECCCHHH
Confidence 89999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHhCCCCcCccCccCcceeEeeeHHHHHHHHHHhcccCCCCChhhhhhhhhhcccceeeEecCCChHhHHHhhhCce
Q 031086 81 LVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGD 160 (166)
Q Consensus 81 llkka~g~~~~~~~~~~~~~~~G~itl~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~~~p~e~~~~i~~G~ 160 (166)
||+||||+.+|++++..|.+++|+||++||||||+.|++||++.+|+++||+|+||||||||+|+++||+||+++||+|+
T Consensus 80 Ll~kaag~~~gs~k~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g~~P~ev~~~I~~G~ 159 (165)
T 2zkr_i 80 LIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGA 159 (165)
T ss_dssp HHHHHHTCSSCCSSTTTCSSCSEEECHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHTEEEC---------------
T ss_pred HHHHHhCCCCCCcccccCceEEeeEeHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHhCeeEEeCCCHHHHHHHHhCCC
Confidence 99999999999977444558999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCC
Q 031086 161 VEIPLD 166 (166)
Q Consensus 161 ~~~~~~ 166 (166)
||||++
T Consensus 160 ~~~p~~ 165 (165)
T 2zkr_i 160 VECPAS 165 (165)
T ss_dssp ------
T ss_pred eeCCCC
Confidence 999985
No 3
>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.4.7.1 PDB: 1vq4_I* 1vq5_I* 1vq6_I* 1vq7_I* 1s72_I* 1vq9_I* 1vqk_I* 1vql_I* 1vqm_I* 1vqn_I* 1vqo_I* 1vqp_I* 1yhq_I* 1yi2_I* 1yij_I* 1yit_I* 1yj9_I* 1yjn_I* 1yjw_I* 2otl_I* ...
Probab=100.00 E-value=2.7e-65 Score=406.25 Aligned_cols=149 Identities=26% Similarity=0.529 Sum_probs=66.4
Q ss_pred EEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhcccCCceeEEEEEEe-cCceEEEE-eCCHHHHHHHHhCC
Q 031086 11 VDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ-NRQAKVAV-VPSAAALVIKALKE 88 (166)
Q Consensus 11 ~~ikl~v~aG~A~p~PplGp~LG~~Gini~~fck~fN~~T~~~~~g~~vpV~Itv~-drsf~~~v-~Ppts~llkka~g~ 88 (166)
++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++| ++|+|++|||+|||| ||||+|++ +||+||||+||||+
T Consensus 3 ~~ikL~v~aG~A~p~PplGPaLG~~Gvni~~fck~fN~~T-~~~~G~~ipV~Itv~~drsf~f~vk~Ppas~Ll~kaagi 81 (162)
T 1vq8_I 3 GTIEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQT-AAFDGTEVPVTVKYDDDGSFEIEVGVPPTAELIKDEAGF 81 (162)
T ss_dssp -----------------------------------------------------------------CCCCHHHHHHHTTSC
T ss_pred eEEEEEeecCccCCCCCcccccccCCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHHhCC
Confidence 5799999999999999999999999999999999999999 999999999999999 99999999 99999999999998
Q ss_pred CCcCccCccCcceeEeeeHHHHHHHHHHhcccCCCCChhhhhhhhhhcccceeeEecCCChHhHHHhhhCceee
Q 031086 89 PERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 162 (166)
Q Consensus 89 ~~~~~~~~~~~~~~G~itl~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~~~p~e~~~~i~~G~~~ 162 (166)
.+|++.+++ +++|+||++||||||+.|++||++.+|+++||+|+||||||||+|++++|+|++++||+|+|+
T Consensus 82 ~kgs~~p~k--~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g~~p~~vi~~I~~g~~~ 153 (162)
T 1vq8_I 82 ETGSGEPQE--DFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIEGENPREFKERIDAGEYD 153 (162)
T ss_dssp CSCCSSTTT--SCCEEECHHHHHHHHHHTTTTCCCSSHHHHHHHHHHHTTTTTEEEC-----------------
T ss_pred CCCCCCCCC--ceeeeeeHHHHHHHHHHHHHhhcccCHHHHHHHHHhhhHhCeEEEeccCHHHHHHhcChhhHH
Confidence 888877776 799999999999999999999999999999999999999999999999999999999999996
No 4
>3j21_H 50S ribosomal protein L11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-64 Score=403.53 Aligned_cols=151 Identities=38% Similarity=0.622 Sum_probs=124.0
Q ss_pred EEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhcccCCceeEEEEEE-e-cCceEEEE-eCCHHHHHHHHhC
Q 031086 11 VDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTV-Q-NRQAKVAV-VPSAAALVIKALK 87 (166)
Q Consensus 11 ~~ikl~v~aG~A~p~PplGp~LG~~Gini~~fck~fN~~T~~~~~g~~vpV~Itv-~-drsf~~~v-~Ppts~llkka~g 87 (166)
.+|+|+|+||+|+|+|||||+|||+|||+|+||++||++| ++|+|++|||+||| | ||||+|++ +||+||||+||||
T Consensus 4 ~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T-~~~~G~~IpV~ItV~~~dRsf~f~vk~Ppas~Ll~Ka~g 82 (164)
T 3j21_H 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEAT-KDFAGMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELG 82 (164)
T ss_dssp SSSCEEEESSCCCCHHHHHHHCCCSSSCTTHHHHHHHHHH-CCSSCCEEEECBCCCTTTCCCCBCCSSSSSTTHHHHHHC
T ss_pred eEEEEEEecCccCCCCCcchhhcccCCcHHHHHHHHHHHH-hhcCCCeeEEEEEEecCCceEEEEEcCCCHHHHHHHHhC
Confidence 4789999999999999999999999999999999999999 99999999999999 8 99999999 9999999999999
Q ss_pred CCCcCccCccCcceeEeeeHHHHHHHHHHhcccCCCCChhhhhhhhhhcccceeeEecCCChHhHHHhhhCceeecc
Q 031086 88 EPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 164 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~G~itl~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~~~p~e~~~~i~~G~~~~~ 164 (166)
+.+|++.+++ +++|+||++||||||+.|++||++.+|+++||+|+||||||||+|+|++|+|++++||+|+||-.
T Consensus 83 ~~kgs~~p~k--~~vG~it~~qi~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g~~p~~v~~~i~~G~~~~~ 157 (164)
T 3j21_H 83 LEKGSGEPKH--NIVGNLTMEQVIKIAKMKKDQMLALTLKAAAKEVIGTALSMGVTVEGKDPREVQKEIDEGVYDEL 157 (164)
T ss_dssp CCSCCSSTTT--CCSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHCCC-----------------------
T ss_pred CCCCCCCCCC--ceeeeeeHHHHHHHHHHHHhhhcccCHHHHHHHHHHHhhcceEEEeccCHHHHHHHhccccHHHH
Confidence 9888887776 79999999999999999999999999999999999999999999999999999999999999753
No 5
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L
Probab=100.00 E-value=2.9e-61 Score=375.42 Aligned_cols=137 Identities=25% Similarity=0.343 Sum_probs=129.2
Q ss_pred CCceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhcccCCceeEEEEEEe-cCceEEEE-eCCHHHHHHH
Q 031086 7 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ-NRQAKVAV-VPSAAALVIK 84 (166)
Q Consensus 7 ~~~~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~fck~fN~~T~~~~~g~~vpV~Itv~-drsf~~~v-~Ppts~llkk 84 (166)
+++.++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++| ++|+|++|||+|||| ||||+|++ +||+||||+|
T Consensus 2 k~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~fck~fN~~T-~~~~G~~ipV~itv~~drsf~f~vk~Ppas~Ll~k 80 (140)
T 1mms_A 2 KKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAET-ADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKK 80 (140)
T ss_dssp -----CEEEEEETTCCCCTTTTTHHHHTTTCCHHHHHHHHHHHT-TTSCSSEEEEEEEECTTSCEEEEECCCCHHHHHHH
T ss_pred CceEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHh-hhcCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHH
Confidence 46788999999999999999999999999999999999999999 999999999999999 99999999 9999999999
Q ss_pred HhCCCCcCccCccCcceeEeeeHHHHHHHHHHhcccCCCCChhhhhhhhhhcccceeeEecC
Q 031086 85 ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDG 146 (166)
Q Consensus 85 a~g~~~~~~~~~~~~~~~G~itl~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~ 146 (166)
|||+++|++++++ +++|+||++||||||+.|++||++.+|+++||+|+||||||||+|++
T Consensus 81 a~g~~~gs~~p~k--~~vG~it~~qi~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g 140 (140)
T 1mms_A 81 AAGIEKGSSEPKR--KIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD 140 (140)
T ss_dssp HHTCSSCCSSTTT--SCCEEECHHHHHHHHHHHGGGCCCSSHHHHHHHHHHHHTTTTEEEC-
T ss_pred HhCCCCCCCCCCC--eEeeeEcHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHcCeeEeeC
Confidence 9999999999987 69999999999999999999999999999999999999999999985
No 6
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=2.6e-61 Score=398.24 Aligned_cols=152 Identities=22% Similarity=0.335 Sum_probs=138.3
Q ss_pred CCCCCCC--CceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhcccCCceeEEEEEEe-cCceEEEE-eC
Q 031086 1 MPPKFDP--SQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ-NRQAKVAV-VP 76 (166)
Q Consensus 1 m~~k~~~--~~~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~fck~fN~~T~~~~~g~~vpV~Itv~-drsf~~~v-~P 76 (166)
||||+++ +++++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++| ++|+|++|||+|||| ||+|+|++ +|
T Consensus 66 M~pk~~~akkv~~~IkL~v~aGkA~PaPPlGPaLG~~GVNim~FcK~fN~~T-~d~~Gl~IPV~ITV~~DRsf~f~vktP 144 (224)
T 3bbo_K 66 MAPKPGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNART-ADKPGFVIPVEITVFDDKSFTFILKTP 144 (224)
T ss_dssp -CCSCCCCCCCSSEEEECCBTTBCCCSTTTTTTTTTTSSCTTSSHHHHHHHG-GGSCSSBCCEEEEECSSSCEEEEECCC
T ss_pred cCCCCCCccceEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHh-cccCCCeEEEEEEEccCCeEEEEecCC
Confidence 8999887 8999999999999999999999999999999999999999999 899999999999999 99999999 99
Q ss_pred CHHHHHHHHhCCCCcCccCccCcceeEeeeHHHHHHHHHHhcccCCCCChhhhhhhhhhcccceeeEecCCChHhHHHh
Q 031086 77 SAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQE 155 (166)
Q Consensus 77 pts~llkka~g~~~~~~~~~~~~~~~G~itl~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~~~p~e~~~~ 155 (166)
|+||||+||||+++|++++++ +++|+||++||||||+.|++|+++.+|+++||+|+||||||||+|++++|++--++
T Consensus 145 paS~LLkKAagi~kGs~kp~~--~~vG~IT~~qV~eIAk~K~~dl~a~~Le~avK~IlGTArSMGi~V~g~~p~~~~~~ 221 (224)
T 3bbo_K 145 PASVLLLKASGAEKGSKDPQM--EKVGKITIDQLRGIATEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILVKKKKE 221 (224)
T ss_dssp CTTHHHHHHHTCSSCCSSTTT--SCCEEECHHHHHHHHHHTCTTSCCSSHHHHHHHHHHHHTTTTEEEC----------
T ss_pred CHHHHHHHHhCCCCCCCCCCC--ceeeeecHHHHHHHHHHHHhhhcCcCHHHHHHHHHHHHHhCeeEEeCCCCChhhcc
Confidence 999999999999999999877 79999999999999999999999999999999999999999999999998875544
No 7
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G
Probab=100.00 E-value=1.3e-59 Score=367.89 Aligned_cols=136 Identities=25% Similarity=0.345 Sum_probs=130.8
Q ss_pred CceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhcccC-CceeEEEEEEe-cCceEEEE-eCCHHHHHHH
Q 031086 8 SQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWK-GLRVTVKLTVQ-NRQAKVAV-VPSAAALVIK 84 (166)
Q Consensus 8 ~~~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~fck~fN~~T~~~~~-g~~vpV~Itv~-drsf~~~v-~Ppts~llkk 84 (166)
...++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++| ++|. |++|||+|||| ||||+|++ +||+||||+|
T Consensus 3 ~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~fck~fN~~T-~~~~~G~~ipV~Itv~~drsf~f~vk~Ppas~Ll~k 81 (145)
T 2ftc_G 3 EVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERT-KDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKA 81 (145)
T ss_pred ceEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHH-hhhcCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHH
Confidence 3578999999999999999999999999999999999999999 9986 99999999999 99999999 9999999999
Q ss_pred HhCCCCcCccCccCcceeEeeeHHHHHHHHHHhccc--CCC--CChhhhhhhhhhcccceeeEecC
Q 031086 85 ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPR--SMA--KDLSGTVKEILGTCVSVGCTVDG 146 (166)
Q Consensus 85 a~g~~~~~~~~~~~~~~~G~itl~~v~eIAk~K~~d--~~~--~~l~~~~k~VlGTa~SmGi~V~~ 146 (166)
|||+.+|++++++ +++|+||++||||||+.|++| |++ .+|+++||+|+||||||||+|++
T Consensus 82 aag~~~gs~~p~~--~~vG~it~~qv~eIA~~K~~d~~l~a~~~~l~~a~k~I~GTArSmGi~V~~ 145 (145)
T 2ftc_G 82 AAGIEKGARQTGK--EVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVK 145 (145)
T ss_pred HhCCCCCCCCCCC--cCcceEcHHHHHHHHHHhCcchhccCccCCHHHHHHHHHHHHhcCeEEEeC
Confidence 9999999999977 799999999999999999997 999 99999999999999999999974
No 8
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; post-translational modification, multiple methyltransferase; HET: SAH 4MM; 1.75A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A 2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K 2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K 2xtg_K ...
Probab=100.00 E-value=6.9e-61 Score=375.47 Aligned_cols=141 Identities=25% Similarity=0.331 Sum_probs=73.1
Q ss_pred CCceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhcccCCceeEEEEEEe-cCceEEEE-eCCHHHHHHH
Q 031086 7 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ-NRQAKVAV-VPSAAALVIK 84 (166)
Q Consensus 7 ~~~~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~fck~fN~~T~~~~~g~~vpV~Itv~-drsf~~~v-~Ppts~llkk 84 (166)
+++.++|+|+|+||+|+|+|||||+|||+|||+|+||++||++| ++|+|++|||+|||| ||||+|++ +||+||||+|
T Consensus 1 k~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T-~~~~G~~ipV~itv~~drsf~~~~~~Ppas~Ll~K 79 (146)
T 3egv_B 1 KKVVAVVKLQLPAGAATPAPPVGPALGQHGANIMEFVKAFNAAT-ANMGDAIVPVEITIYADRSFTFVTKTPPASYLIRK 79 (146)
T ss_dssp CCEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHT-TTSTTCEEEEEEEEETTSCEEEEECCCCHHHHC--
T ss_pred CceEEEEEEEEecccccCCCCcchhhcccCCCHHHHHHHHHHHh-cccCCCEeeEEEEEeCCCeEEEEEeCCCHHHHHHH
Confidence 46889999999999999999999999999999999999999999 899999999999999 99999988 9999999999
Q ss_pred HhCCCCcCccCccCcceeEeeeHHHHHHHHHHhcccCCCCChhhhhhhhhhcccceeeEecCCChH
Q 031086 85 ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPR 150 (166)
Q Consensus 85 a~g~~~~~~~~~~~~~~~G~itl~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~~~p~ 150 (166)
|||+++|+..+++ +++|+||++||||||+.|++|+++.+|+++||+|+||||||||+|++.||.
T Consensus 80 a~g~~~gs~~p~~--~~vG~it~~qi~eIA~~K~~d~~a~~l~~a~k~I~GTA~SmGi~V~g~~~~ 143 (146)
T 3egv_B 80 AAGLEKGAHKPGR--EKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARSMGVEVVGAPEV 143 (146)
T ss_dssp ------------------------------------------------------------------
T ss_pred hhCCCCCCCCCCC--eeeeeecHHHHHHHHHHHhhhhcccCHHHHHHHhHhhhhcCeEEEECCCcC
Confidence 9999999877765 799999999999999999999999999999999999999999999998875
No 9
>3r8s_I 50S ribosomal protein L11; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I* 2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ...
Probab=100.00 E-value=7.9e-61 Score=373.26 Aligned_cols=137 Identities=24% Similarity=0.338 Sum_probs=132.5
Q ss_pred CCceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhcccC-CceeEEEEEEe-cCceEEEE-eCCHHHHHH
Q 031086 7 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWK-GLRVTVKLTVQ-NRQAKVAV-VPSAAALVI 83 (166)
Q Consensus 7 ~~~~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~fck~fN~~T~~~~~-g~~vpV~Itv~-drsf~~~v-~Ppts~llk 83 (166)
+++.++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++| ++|. |++|||+|||| ||||+|++ +||+||||+
T Consensus 2 kk~~~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T-~~~k~G~~ipV~itv~~drsf~f~vk~Ppas~Ll~ 80 (141)
T 3r8s_I 2 KKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKT-DSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLK 80 (141)
T ss_dssp CCCSCCCCCCSCSSSSSCTTTTCTTSSSSSCCSSSTTTTGGGTH-HHHCSCSCCCBCCCCSSSSSCCCCBCCCCSSTTTT
T ss_pred ceEEEEEEEEEecCccCCCCCcchhhccCCCCHHHHHHHHHHHH-hcccCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHH
Confidence 57888999999999999999999999999999999999999999 9975 99999999999 99999999 999999999
Q ss_pred HHhCCCCcCccCccCcceeEeeeHHHHHHHHHHhcccCCCCChhhhhhhhhhcccceeeEecC
Q 031086 84 KALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDG 146 (166)
Q Consensus 84 ka~g~~~~~~~~~~~~~~~G~itl~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~ 146 (166)
||||+++|+++|++ +++|+||++||||||+.|++||++.+|+++||+|+||||||||+|+|
T Consensus 81 ka~g~~~gs~~p~~--~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g 141 (141)
T 3r8s_I 81 KAAGIKSGSGKPNK--DKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED 141 (141)
T ss_dssp SSSSCSSCCSSTTT--SCCSCCCSSTTSTTTSCCSSCCSCSCTTTTTTTSTTTSSSSCCCCCC
T ss_pred HHhCCCCCCCCCCC--cEeeEecHHHHHHHHHHHHhhhcCcCHHHHHHHHHHhhhcceEEEeC
Confidence 99999999998866 79999999999999999999999999999999999999999999986
No 10
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1
Probab=100.00 E-value=1.8e-39 Score=236.77 Aligned_cols=86 Identities=71% Similarity=1.090 Sum_probs=84.5
Q ss_pred CCCCCCCCceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhcccCCceeEEEEEEecCceEEEEeCCHHH
Q 031086 1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAA 80 (166)
Q Consensus 1 m~~k~~~~~~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~fck~fN~~T~~~~~g~~vpV~Itv~drsf~~~v~Ppts~ 80 (166)
||||+|++++++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++| ++|+|++|||+||||||||+|+++||+|+
T Consensus 7 M~pk~~p~~~~~ikL~v~aG~A~p~pplgPaLG~~Glni~~f~k~fn~~T-~~~kG~~ipV~itv~drsf~~~v~PpaS~ 85 (92)
T 1wib_A 7 GPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKAT-GDWKGLRITVKLTIQNRQAQIEVVPSASA 85 (92)
T ss_dssp CCCCCCSSSCEEEEEEEETTCCCCSSCSHHHHTTTCSCHHHHHHHHHHHT-TTTTTSEEEEEEEEETTEEECCBCSCCCC
T ss_pred CCCCCCCCeEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEeCCeeEEEEcCCHHH
Confidence 89999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHhC
Q 031086 81 LVIKALK 87 (166)
Q Consensus 81 llkka~g 87 (166)
||+|++|
T Consensus 86 Ll~k~~~ 92 (92)
T 1wib_A 86 LSGPSSG 92 (92)
T ss_dssp CCCCSCC
T ss_pred HHHHhcC
Confidence 9999876
No 11
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A
Probab=99.98 E-value=4.2e-33 Score=195.12 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=66.9
Q ss_pred CCceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhcccCCceeEEEEEEe-cCceEEEE-eC
Q 031086 7 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ-NRQAKVAV-VP 76 (166)
Q Consensus 7 ~~~~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~fck~fN~~T~~~~~g~~vpV~Itv~-drsf~~~v-~P 76 (166)
+++.++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++| ++|+|++|||+|||| ||||+|++ +|
T Consensus 2 k~~~~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T-~~~~G~~ipV~Itv~~drsf~~~~ktP 72 (72)
T 3cjs_B 2 KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAAT-ANMGDAIVPVEITIYADRSFTFVTKTP 72 (72)
T ss_dssp CCEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHH-GGGCSCEEEEEEEEETTSCEEEEECCC
T ss_pred cceEEEEEEEEecCccCCCCCccchhcccCCCHHHHHHHHHHHH-hhcCCCeEeEEEEEeCCCeEEEEEcCC
Confidence 47889999999999999999999999999999999999999999 999999999999999 99999999 76
No 12
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=99.97 E-value=6.2e-32 Score=190.94 Aligned_cols=75 Identities=27% Similarity=0.317 Sum_probs=71.0
Q ss_pred eEEEE-eCCHHHHHHHHhCCCCcCccCccCcceeEeeeHHHHHHHHHHhcccCCCCChhhhhhhhhhcccceeeEecC
Q 031086 70 AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDG 146 (166)
Q Consensus 70 f~~~v-~Ppts~llkka~g~~~~~~~~~~~~~~~G~itl~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~ 146 (166)
|+|++ +||+||||+||||+++|+++|++ +++|+||++||||||+.|++||++.+|+++||+|+||||||||+|++
T Consensus 1 f~f~~ktPpas~Ll~kaagi~kgs~~p~~--~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~~ 76 (76)
T 1hc8_A 1 FTFITKTPPAAVLLKKAAGIESGSGEPNR--NKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGIVVEN 76 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHTCSCCCSSTTT--CCCEEECHHHHHHHHHHSGGGCCCSSHHHHHHHHHHHHHHHTEEEC-
T ss_pred CEEEEcCCCHHHHHHHHhCCCCCCCCCCC--cEeeeecHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCeeEeeC
Confidence 78999 99999999999999999999877 69999999999999999999999999999999999999999999985
No 13
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Probab=99.94 E-value=3.8e-28 Score=167.79 Aligned_cols=66 Identities=29% Similarity=0.342 Sum_probs=63.9
Q ss_pred eCCHHHHHHHHhCCCCcCccCccCcceeEeeeHHHHHHHHHHhcccCCCCChhhhhhhhhhcccceee
Q 031086 75 VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGC 142 (166)
Q Consensus 75 ~Ppts~llkka~g~~~~~~~~~~~~~~~G~itl~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi 142 (166)
+||+||||+||||+++|+++|++ +++|+||++||||||+.|++||++.+|+++||+|+||||||||
T Consensus 2 tPpas~Ll~kaagi~kgs~~p~~--~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi 67 (67)
T 1qa6_A 2 TPPAAVLLKKAAGIESGSGEPNR--NKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGI 67 (67)
T ss_dssp CSCHHHHHHHHHTCSCCCCTTSS--CCCCCCTTTHHHHHHHHHGGGCCCSSHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHhCCCCCCCCCCC--cccceecHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHhcCC
Confidence 69999999999999999998877 6999999999999999999999999999999999999999997
No 14
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=33.44 E-value=23 Score=24.66 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=22.0
Q ss_pred EEEEEEecCceEEEEeCCHHHHHHHHhC
Q 031086 60 TVKLTVQNRQAKVAVVPSAAALVIKALK 87 (166)
Q Consensus 60 pV~Itv~drsf~~~v~Ppts~llkka~g 87 (166)
+|+|+|++|+|.+...+.--..|.+++.
T Consensus 6 ~v~V~I~G~~Y~l~~~~~~ee~l~~aA~ 33 (104)
T 1t3u_A 6 TLTVQILDKEYCINCPDDERANLESAAR 33 (104)
T ss_dssp CEEEEETTEEEEECCCTTTHHHHHHHHH
T ss_pred eEEEEECCEEEEeeCCCCCHHHHHHHHH
Confidence 5899999999998887665666666765
No 15
>2k87_A Non-structural protein 3 of replicase polyprotein; structural genomics, joint center for structural genomics, J protein structure initiative; NMR {Sars coronavirus}
Probab=27.03 E-value=52 Score=24.25 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=23.5
Q ss_pred hhHHHHHHHHhhcc-cCCceeEEEEEEe-cCceEEEE
Q 031086 40 KKIGEDIAKETAKD-WKGLRVTVKLTVQ-NRQAKVAV 74 (166)
Q Consensus 40 ~~fck~fN~~T~~~-~~g~~vpV~Itv~-drsf~~~v 74 (166)
.+||++||+.+ .. .++ ..-+++|.+ |-+=|+.+
T Consensus 30 ~~ia~~~N~~l-gf~k~~-~~~lk~T~~P~~~GDVVl 64 (116)
T 2k87_A 30 TKFADDLNQMT-GFTKPA-SRELSVTFFPDLNGDVVA 64 (116)
T ss_dssp HHHHHHHHHHT-TCCSSC-SEEEEEEETTCCCSSEEE
T ss_pred HHHHHHHHHHh-CCCCCC-ceEEEEEECCCCCCCEEE
Confidence 48999999999 54 334 666777777 66656655
No 16
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=25.89 E-value=8.7 Score=28.22 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=32.0
Q ss_pred eeEeeeHHHHHHHHHHhcccCCCCChhhhhhhhh-hcccceeeEecC------CChHhHHHhhhC
Q 031086 101 HNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEIL-GTCVSVGCTVDG------KDPRDLQQEITD 158 (166)
Q Consensus 101 ~~G~itl~~v~eIAk~K~~d~~~~~l~~~~k~Vl-GTa~SmGi~V~~------~~p~e~~~~i~~ 158 (166)
.+|..|+++++. -+.+ |...++..+ -.+..+|++|+. .+|.++++.+..
T Consensus 79 viG~~tldeils-~R~~--------i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~ 134 (143)
T 1win_A 79 ILGTLTVEQIYQ-DRDQ--------FAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGK 134 (143)
T ss_dssp HHHHSCHHHHHH-THHH--------HHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCC
T ss_pred HHhcCCHHHHHH-HHHH--------HHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHH
Confidence 579999999988 2211 223333333 344679999995 468888887754
No 17
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=23.97 E-value=28 Score=25.45 Aligned_cols=37 Identities=8% Similarity=0.216 Sum_probs=30.5
Q ss_pred CCChhhhhhhhhhcccceeeEecCCChHhHHHhhhCcee
Q 031086 123 AKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDV 161 (166)
Q Consensus 123 ~~~l~~~~k~VlGTa~SmGi~V~~~~p~e~~~~i~~G~~ 161 (166)
..++..+++.++|+|+.-|--+.| -+++++.|+.|+.
T Consensus 5 ~~~i~~~l~~~L~~A~~~gkl~~G--~~~v~Kai~~gka 41 (126)
T 2xzm_U 5 NQQLNEVLAKVIKSSNCQDAISKG--LHEVLRTIEAKQA 41 (126)
T ss_dssp THHHHHHHHHHHTTTTSSSCEEES--HHHHHHHHHHTCC
T ss_pred cccHHHHHHHHHHHHHHcCCEeec--HHHHHHHHHcCCc
Confidence 357889999999999988877766 5788889888874
No 18
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=21.77 E-value=5.7 Score=27.70 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=26.2
Q ss_pred HhcccCCCCChhhhhhhhhhcccceeeEecC
Q 031086 116 VMRPRSMAKDLSGTVKEILGTCVSVGCTVDG 146 (166)
Q Consensus 116 ~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~ 146 (166)
++....+...|+..|+.++-+|+..|+.|.|
T Consensus 13 I~L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~G 43 (87)
T 3d3c_J 13 IRLKAFDHRLIDQATAEIVETAKRTGAQVRG 43 (87)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHHHHhCCccCC
Confidence 4455567788999999999999999999876
No 19
>2vqe_J 30S ribosomal protein S10, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.58.15.1 PDB: 1gix_M* 1hnw_J* 1hnx_J* 1hnz_J* 1hr0_J 1ibk_J* 1ibl_J* 1ibm_J 1jgo_M* 1jgp_M* 1jgq_M* 1ml5_M* 1xmo_J* 1xmq_J* 1xnq_J* 1xnr_J* 1yl4_M 2b64_J* 2b9m_J* 2b9o_J* ...
Probab=21.16 E-value=19 Score=25.50 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=24.9
Q ss_pred cccCCCCChhhhhhhhhhcccceeeEecC
Q 031086 118 RPRSMAKDLSGTVKEILGTCVSVGCTVDG 146 (166)
Q Consensus 118 ~~d~~~~~l~~~~k~VlGTa~SmGi~V~~ 146 (166)
....+...|+..|+.+..+|+.+|+.|.|
T Consensus 8 Lks~d~~~Ld~~~~~i~~~ak~~g~~v~g 36 (105)
T 2vqe_J 8 LRGFDHKTLDASAQKIVEAARRSGAQVSG 36 (105)
T ss_dssp EEESCSSTTTTTTTHHHHTTTSSSCCCCC
T ss_pred EEEcCHHHHHHHHHHHHHHHHHhCCcccC
Confidence 34456688999999999999999999876
Done!