RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031086
(166 letters)
>3iz5_J 60S ribosomal protein L12 (L11P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_J
Length = 166
Score = 176 bits (447), Expect = 2e-57
Identities = 148/164 (90%), Positives = 161/164 (98%)
Query: 1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
MPPK DP+QVVDV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 61 VKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPR 120
VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKH+GNI+LDDVIEIA++MR R
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR 120
Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 164
SMAK+++GTVKEILGTCVSVGCTVDGKDP+DLQQEI+DG+VEIP
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEIP 164
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K
1s1i_K
Length = 165
Score = 165 bits (419), Expect = 3e-53
Identities = 114/164 (69%), Positives = 139/164 (84%), Gaps = 1/164 (0%)
Query: 1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
MPPKFDP+++ VY+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T DWKGLR+T
Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKAT-GDWKGLRIT 59
Query: 61 VKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPR 120
VKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA+ MR R
Sbjct: 60 VKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHR 119
Query: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 164
S+A++LSGT+KEILGT SVGC VDG+ P D+ +I G VE P
Sbjct: 120 SLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163
>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: a.4.7.1 PDB: 1vq4_I*
1vq5_I* 1vq6_I* 1vq7_I* 1s72_I* 1vq9_I* 1vqk_I* 1vql_I*
1vqm_I* 1vqn_I* 1vqo_I* 1vqp_I* 1yhq_I* 1yi2_I* 1yij_I*
1yit_I* 1yj9_I* 1yjn_I* 1yjw_I* 2otl_I* ...
Length = 162
Score = 155 bits (393), Expect = 3e-49
Identities = 40/153 (26%), Positives = 80/153 (52%), Gaps = 7/153 (4%)
Query: 13 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQA-- 70
+ V V GGE L P++GP + + + ++I +T + G V V + + +
Sbjct: 5 IEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQT-AAFDGTEVPVTVKYDDDGSFE 63
Query: 71 -KVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGT 129
+V V P+A + +A E + + ++++D V +IA+ P ++ DL+
Sbjct: 64 IEVGVPPTAELIKDEAGFETGSGEPQEDFV---ADLSVDQVKQIAEQKHPDLLSYDLTNA 120
Query: 130 VKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 162
KE++GTC S+G T++G++PR+ ++ I G+ +
Sbjct: 121 AKEVVGTCTSLGVTIEGENPREFKERIDAGEYD 153
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 224
Score = 129 bits (325), Expect = 3e-38
Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 3/158 (1%)
Query: 1 MPPKFDPSQVVD--VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLR 58
M PK ++ V + + + G+ A + P +G G++ +D T D G
Sbjct: 66 MAPKPGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNART-ADKPGFV 124
Query: 59 VTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMR 118
+ V++TV + ++ ++ + A V+ K ++ G IT+D + IA
Sbjct: 125 IPVEITVFDDKSFTFILKTPPASVLLLKASGAEKGSKDPQMEKVGKITIDQLRGIATEKL 184
Query: 119 PRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEI 156
P + ++ I GT ++G +D ++E+
Sbjct: 185 PDLNCTTIESAMRIIAGTAANMGIDIDPPILVKKKKEV 222
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, ribosome; NMR {Mus musculus} SCOP:
d.47.1.1
Length = 92
Score = 119 bits (299), Expect = 5e-36
Identities = 61/86 (70%), Positives = 73/86 (84%), Gaps = 1/86 (1%)
Query: 1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
PPKFDP++V VY+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T DWKGLR+T
Sbjct: 7 GPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKAT-GDWKGLRIT 65
Query: 61 VKLTVQNRQAKVAVVPSAAALVIKAL 86
VKLT+QNRQA++ VVPSA+AL +
Sbjct: 66 VKLTIQNRQAQIEVVPSASALSGPSS 91
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase;
post-translational modification, multiple
methyltransferase; HET: SAH 4MM; 1.75A {Thermus
thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A
2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K
2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K
2xtg_K ...
Length = 146
Score = 110 bits (277), Expect = 6e-32
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 1/137 (0%)
Query: 13 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKV 72
V +++ G A + P +G G + + + T + V V++T+ ++
Sbjct: 7 VKLQLPAGAATPAPPVGPALGQHGANIMEFVKAFNAAT-ANMGDAIVPVEITIYADRSFT 65
Query: 73 AVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKE 132
V + A + + G IT + V+EIAK P DL +
Sbjct: 66 FVTKTPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARM 125
Query: 133 ILGTCVSVGCTVDGKDP 149
I G+ S+G V G
Sbjct: 126 IAGSARSMGVEVVGAPE 142
>3r8s_I 50S ribosomal protein L11; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I*
2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I*
2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ...
Length = 141
Score = 103 bits (257), Expect = 5e-29
Identities = 29/133 (21%), Positives = 53/133 (39%)
Query: 13 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKV 72
V ++V G + + P +G G++ + + +T KGL + V +TV ++
Sbjct: 8 VKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFT 67
Query: 73 AVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKE 132
V + A V+ + N G I+ + EIA+ D+ +
Sbjct: 68 FVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRS 127
Query: 133 ILGTCVSVGCTVD 145
I GT S+G V+
Sbjct: 128 IEGTARSMGLVVE 140
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA,
ribosome, translocation, thiostrep; 2.57A {Thermotoga
maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A*
1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K
2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A
487d_L 1pn8_L 1pn7_L
Length = 140
Score = 98.7 bits (245), Expect = 3e-27
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Query: 13 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKV 72
+ +++ G+ A + P +G G++ + + ET D G+ + V +TV ++
Sbjct: 8 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAET-ADKAGMILPVVITVYEDKSFT 66
Query: 73 AVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKE 132
++ + A + K G +T + EIAK P A L +K
Sbjct: 67 FIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKI 126
Query: 133 ILGTCVSVGCTVD 145
I GT S+G V
Sbjct: 127 IEGTAKSMGIEVV 139
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial;
mitochondrial ribosome, large ribosomal subunit,
ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G
Length = 145
Score = 87.6 bits (216), Expect = 7e-23
Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 4/137 (2%)
Query: 13 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKV 72
+ V G L P +G G+S + ++ + T +G+ + K+ V+ +
Sbjct: 8 IRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFE 67
Query: 73 AVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKV----MRPRSMAKDLSG 128
+ + + G +TL V EIA++ LS
Sbjct: 68 IKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSS 127
Query: 129 TVKEILGTCVSVGCTVD 145
V+ I+G+ S+G V
Sbjct: 128 VVRSIIGSARSLGIRVV 144
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure,
RNA-protein; HET: GTP; 2.8A {Bacillus
stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A
1fow_A 1fox_A 1foy_A 2fow_A
Length = 76
Score = 50.2 bits (120), Expect = 3e-09
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 76 PSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILG 135
P AA L+ KA + +N I D V EIA++ P A + ++ I G
Sbjct: 8 PPAAVLLKKAAGIESGSGEPNRNK--VATIKRDKVREIAELKMPDLNAASIEAAMRMIEG 65
Query: 136 TCVSVGCTVD 145
T S+G V+
Sbjct: 66 TARSMGIVVE 75
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 2e-07
Identities = 38/196 (19%), Positives = 66/196 (33%), Gaps = 59/196 (30%)
Query: 5 FDPSQVVDVYVRVTGGEVGAASS-LAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKL 63
PS + D + E G S L+ L+ +++ + + K + G +V + L
Sbjct: 319 LPPSILEDS---LENNE-GVPSPMLSIS----NLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 64 TVQN--RQAKVAVV---PSA-AALV-----IKAL------KEPERDRKKTKNIKHN-GNI 105
N + VV P + L KA + P +RK + +
Sbjct: 371 V--NGAKNL---VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK--FSNRFLPV 423
Query: 106 T-------LDDVIE-IAKVMRPRSM---AKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQ 154
L + I K + ++ AKD+ + V T DG D R L
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ----------IPVYDTFDGSDLRVLSG 473
Query: 155 EIT----DGDVEIPLD 166
I+ D + +P+
Sbjct: 474 SISERIVDCIIRLPVK 489
Score = 42.0 bits (98), Expect = 5e-05
Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 33/129 (25%)
Query: 5 FDPSQVVD-VYVR-------VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDW-- 54
+V+ V+ R V E+G ++ G + ++P ++ ++E +
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSN-----YGMIAINPGRVAASFSQEALQYVVE 1831
Query: 55 -----KGLRV-TVKLTVQNRQ-----AKVAVVPSAAALVIKALKEPERDRKKTKNIKHNG 103
G V V V+N+Q A+ V+ +K +K I+
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAAGDLRAL--DTVTNVLNFIKL-----QKIDIIELQK 1884
Query: 104 NITLDDVIE 112
+++L++V
Sbjct: 1885 SLSLEEVEG 1893
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E
RNA-protein interaction, minor groove binding,
antibiotic binding; 2.80A {Geobacillus
stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Length = 67
Score = 40.9 bits (96), Expect = 8e-06
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 76 PSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILG 135
P AA L+ KA + +N I D V EIA++ P A + ++ I G
Sbjct: 3 PPAAVLLKKAAGIESGSGEPNRNKVAT--IKRDKVREIAELKMPDLNAASIEAAMRMIEG 60
Query: 136 TCVSVG 141
T S+G
Sbjct: 61 TARSMG 66
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 9e-06
Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 32/170 (18%)
Query: 5 FDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLT 64
P +V + ++ P LS I E I ++ W +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--IIAESI-RDGLATWDNWK-----H 349
Query: 65 VQNRQAKVAVVPSAAALVIKALKEPERDRK---------KTKNIKHN------GNITLDD 109
V + + S L EP RK + +I ++ D
Sbjct: 350 VNCDKLTTIIESSLNVL------EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 110 VIEIAKVMRPRSMA-KDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITD 158
V+ + + S+ K + I + + ++ + L + I D
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE--YALHRSIVD 451
Score = 32.1 bits (72), Expect = 0.069
Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 35/146 (23%)
Query: 45 DIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPER--DRKKTKNI--K 100
++ + AK W ++ K+ + R +V SAA +L + K++ K
Sbjct: 252 NV--QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 101 HNGNITLDDVIEIAKVMRPRSMA------KDLSGT-----------VKEILGTCVSVGCT 143
+ D+ PR ++ +D T + I+ + ++V
Sbjct: 310 -YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV--- 365
Query: 144 VDGKDPRDLQQ-----EITDGDVEIP 164
+P + ++ + IP
Sbjct: 366 ---LEPAEYRKMFDRLSVFPPSAHIP 388
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.020
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 12/72 (16%)
Query: 38 SPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPE-----RD 92
++ ++ E+ + W+ + + +Q A V KA K+ E +
Sbjct: 76 QADRLTQE--PESIRKWREEQ---RKRLQELDAASKV--MEQEWREKAKKDLEEWNQRQS 128
Query: 93 RKKTKNIKHNGN 104
+ KN +N
Sbjct: 129 EQVEKNKINNRI 140
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.036
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 14/42 (33%)
Query: 48 KETAKDWKGLRVTVKLTVQNRQAKVAVVP-SAAALVIKALKE 88
K+ K K L+ ++KL SA AL IKA E
Sbjct: 19 KQALK--K-LQASLKL----------YADDSAPALAIKATME 47
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A
{Escherichia coli} PDB: 2w8i_A 2w8h_A*
Length = 359
Score = 27.2 bits (60), Expect = 2.5
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 30 PKIGPL---GLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVV 75
P IG + G + ++ +DI + +V V + R KV V
Sbjct: 109 PYIGKVQVAGKTVSQVRQDITSRLTTYIESPQVDVSI-AAFRSQKVYVT 156
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase;
1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A
2z0d_A 2z0e_A
Length = 396
Score = 26.8 bits (58), Expect = 3.9
Identities = 8/48 (16%), Positives = 21/48 (43%)
Query: 76 PSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMA 123
P+ A V+K L + +I + + ++++ + + P + A
Sbjct: 148 PNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGA 195
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 26.8 bits (60), Expect = 4.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 114 AKVMRPRSMAKDLSGTVKEILGTCVSVGC 142
KVM + GT + GTCV+VGC
Sbjct: 56 KKVMVLDFVTPTPLGTRWGLGGTCVNVGC 84
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 26.5 bits (59), Expect = 5.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 114 AKVMRPRSMAKDLSGTVKEILGTCVSVGC 142
AK + GT + GTCV+VGC
Sbjct: 131 AKTAVLDYVEPTPIGTTWGLGGTCVNVGC 159
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 25.6 bits (57), Expect = 8.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 114 AKVMRPRSMAKDLSGTVKEILGTCVSVGC 142
KV + GT + GTCV+VGC
Sbjct: 30 KKVAVADYVEPSPRGTKWGLGGTCVNVGC 58
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro;
HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*
Length = 549
Score = 25.6 bits (55), Expect = 10.0
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 2/60 (3%)
Query: 4 KFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKL 63
F S V + G + + P L + + + G R +V+
Sbjct: 86 SFLYSHDATVKISRNGSSANSNVVIRPT--SLNFPVRYDNQSVYITVPYSPTGYRFSVEF 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.133 0.375
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,609,597
Number of extensions: 154856
Number of successful extensions: 466
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 38
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.0 bits)