RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 031086
(166 letters)
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 92
Score = 96.4 bits (240), Expect = 2e-27
Identities = 61/85 (71%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Query: 1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
PPKFDP++V VY+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T DWKGLR+T
Sbjct: 7 GPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKAT-GDWKGLRIT 65
Query: 61 VKLTVQNRQAKVAVVPSAAALVIKA 85
VKLT+QNRQA++ VVPSA+AL +
Sbjct: 66 VKLTIQNRQAQIEVVPSASALSGPS 90
>gi|226355464|ref|YP_002785204.1|(72-143:144) putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115]
gi|226317454|gb|ACO45450.1| putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115] E=8e-31
s/c=1.88 id=89% cov=101%
Length = 72
Score = 74.6 bits (184), Expect = 4e-19
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 76 PSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILG 135
P + L+ KA T N G + + V+EIAK P A L + G
Sbjct: 1 PPMSYLIRKAAGLS--KGSATPNKAKVGKLNWEQVLEIAKTKMPDLNAGSLEAAANTVAG 58
Query: 136 TCVSVGCTVDGK 147
T S+G T++G
Sbjct: 59 TARSMGVTIEGA 70
>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain
{Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 70
Score = 73.8 bits (182), Expect = 7e-19
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 75 VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEIL 134
VP A L+ ++++D V +IA+ P ++ DL+ KE++
Sbjct: 2 VPPTAELIKDEAGFE--TGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVV 59
Query: 135 GTCVSVGCTVD 145
GTC S+G T++
Sbjct: 60 GTCTSLGVTIE 70
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 74
Score = 47.6 bits (114), Expect = 9e-09
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 76 PSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILG 135
P AA L+ KA + +N I D V EIA++ P A + ++ I G
Sbjct: 7 PPAAVLLKKAAGIESGSGEPNRNK--VATIKRDKVREIAELKMPDLNAASIEAAMRMIEG 64
Query: 136 TCVSVGCTVD 145
T S+G V+
Sbjct: 65 TARSMGIVVE 74
>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 68
Score = 43.0 bits (102), Expect = 4e-07
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 76 PSAAALVIKA--LKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEI 133
P AA L+ KA +K K K G I+ + EIA+ D+ + I
Sbjct: 1 PPAAVLLKKAAGIKSGSGKPNKDKV----GKISRAQLQEIAQTKAADMTGADIEAMTRSI 56
Query: 134 LGTCVSVGCTVD 145
GT S+G V+
Sbjct: 57 EGTARSMGLVVE 68
>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 67
Score = 41.1 bits (97), Expect = 2e-06
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 76 PSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILG 135
P A+ L+ KA + K + G IT + V+EIAK P DL + I G
Sbjct: 2 PPASYLIRKAAGLEKGAHKPGREK--VGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAG 59
Query: 136 TCVSVG 141
+ S+G
Sbjct: 60 SARSMG 65
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 70
Score = 40.4 bits (95), Expect = 4e-06
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 76 PSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILG 135
P A+ L+ KA + K G +T + EIAK P A L +K I G
Sbjct: 3 PPASFLLKKAAGIEKG--SSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEG 60
Query: 136 TCVSVGCTV 144
T S+G V
Sbjct: 61 TAKSMGIEV 69
>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 71
Score = 29.3 bits (66), Expect = 0.050
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 15 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTV 65
++V G + + P +G G++ + + +T KGL + V +TV
Sbjct: 9 LQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITV 59
>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 350
Score = 28.1 bits (62), Expect = 0.50
Identities = 9/74 (12%), Positives = 24/74 (32%)
Query: 76 PSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILG 135
P+ A V+K L + +I + + ++++ + + P + A
Sbjct: 141 PNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCN 200
Query: 136 TCVSVGCTVDGKDP 149
+ + P
Sbjct: 201 GFPAGAEVTNRPSP 214
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 28.1 bits (61), Expect = 0.61
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 58 RVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVM 117
V ++ + QA+V V+P +AA VI+ + D+ + + + I V
Sbjct: 25 MVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAIDKIDFDALATATGLAGNIAIPF--VK 82
Query: 118 RPRSMAKDLSGTVKEILGTCVSVGCTVD 145
+ ++ KD + + +D
Sbjct: 83 QLTAIVKDADEDAARYVHWGATSQDILD 110
>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 115
Score = 25.6 bits (55), Expect = 2.0
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 55 KGLRVTVKLTVQN 67
KG +++VK +QN
Sbjct: 101 KGTKLSVKPNIQN 113
>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 365
Score = 26.1 bits (56), Expect = 2.5
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 99 IKHNGNITLDDVIEIA 114
IK G + + +E+
Sbjct: 14 IKAAGPMPVWRYMELC 29
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 24.8 bits (53), Expect = 6.6
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 68 RQAKVAVVPSAAALVIKALKEPERDRKKTKNI 99
+ + V S+ A A+K +R K
Sbjct: 258 LKEGLLVGISSGAAAAAAIKLAQRPENAGKLF 289
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 76
Score = 23.1 bits (50), Expect = 9.5
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 97 KNIKHNGNITLDDVIEIAKVMRPRSM 122
++ + N+ L D EI + +
Sbjct: 35 RSYDQHMNLVLSDSEEIQSDGSGKKL 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.133 0.375
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 619,352
Number of extensions: 27394
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 20
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (22.6 bits)