Query 031087
Match_columns 166
No_of_seqs 111 out of 345
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 14:14:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_V RPS17E; ribosome, trans 75.5 1.1 3.9E-05 33.8 1.7 27 5-38 49-75 (130)
2 3u5c_R RP51A, 40S ribosomal pr 61.9 5.1 0.00017 30.5 2.7 27 5-38 49-75 (136)
3 3iz6_Q 40S ribosomal protein S 47.7 6 0.0002 30.2 1.0 27 5-38 49-75 (141)
4 1v54_B Cytochrome C oxidase po 18.7 1.1E+02 0.0038 24.3 3.9 21 94-114 60-80 (227)
5 2gsm_B Cytochrome C oxidase su 16.6 1.2E+02 0.0042 24.6 3.8 17 98-114 78-94 (262)
6 3hb3_B Cytochrome C oxidase su 13.2 1.4E+02 0.0049 24.9 3.3 16 99-114 110-125 (298)
7 2fm8_C Cell invasion protein S 11.5 92 0.0032 25.3 1.6 14 125-138 219-232 (240)
8 2fm9_A Cell invasion protein S 10.2 81 0.0028 25.2 0.8 12 127-138 195-206 (215)
9 2exn_A Hypothetical protein BO 9.9 72 0.0025 23.1 0.4 10 27-36 10-19 (136)
10 2k37_A Chlorosome protein A; b 9.3 90 0.0031 20.3 0.6 11 122-132 27-37 (59)
No 1
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V
Probab=75.53 E-value=1.1 Score=33.84 Aligned_cols=27 Identities=48% Similarity=0.596 Sum_probs=21.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhccccccchhhHH
Q 031087 5 RFAGDMTHLISILVLLLKIYATKSCSGISLKTQE 38 (166)
Q Consensus 5 r~~gd~~Hl~s~~iLl~ki~~~kS~~GiSlkTQ~ 38 (166)
|++|...| +.|-.+...+.|||+|.|+
T Consensus 49 kIAGYVTh-------lmkriq~gpvrgis~klqE 75 (130)
T 2xzm_V 49 KIAGFATH-------LMKRIQKGPVRGISLKVQE 75 (130)
T ss_dssp HHHHHHHH-------HHHHTTTSCCTTCCCTTTT
T ss_pred cccchhhh-------HhhhcccCcccccccchhH
Confidence 67888888 3566677789999999996
No 2
>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R
Probab=61.86 E-value=5.1 Score=30.46 Aligned_cols=27 Identities=44% Similarity=0.577 Sum_probs=20.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhccccccchhhHH
Q 031087 5 RFAGDMTHLISILVLLLKIYATKSCSGISLKTQE 38 (166)
Q Consensus 5 r~~gd~~Hl~s~~iLl~ki~~~kS~~GiSlkTQ~ 38 (166)
|++|...|+ .|-.+.-.+.|||+|.|+
T Consensus 49 kIAGYVThL-------mKriq~GpvrgisiklqE 75 (136)
T 3u5c_R 49 KIAGYTTHL-------MKRIQKGPVRGISFKLQE 75 (136)
T ss_dssp HHHHHHHHH-------HHHHTTSCBTTBCCSHHH
T ss_pred ehhhhhhhh-------hcccccCCcccceeehhH
Confidence 566766665 455666679999999997
No 3
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=47.72 E-value=6 Score=30.23 Aligned_cols=27 Identities=44% Similarity=0.560 Sum_probs=20.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhccccccchhhHH
Q 031087 5 RFAGDMTHLISILVLLLKIYATKSCSGISLKTQE 38 (166)
Q Consensus 5 r~~gd~~Hl~s~~iLl~ki~~~kS~~GiSlkTQ~ 38 (166)
|++|...|+ .|-.+.-.+.|||+|.|+
T Consensus 49 kIAGYVThl-------mKriq~GpvrgisiklqE 75 (141)
T 3iz6_Q 49 KVAGFTTHL-------MRRIQRGPVRGISLKLQE 75 (141)
T ss_dssp HHHHHHHHH-------HHHHCSCCCCCSSCCSSC
T ss_pred hhhheeeeh-------hhccccCCccccceehhH
Confidence 567777775 455566678999999986
No 4
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=18.69 E-value=1.1e+02 Score=24.33 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=12.8
Q ss_pred cccchhhHHHHHHHHHHhcCC
Q 031087 94 TFRHYFLIAACFVLSLILNEK 114 (166)
Q Consensus 94 tf~~~~li~p~~vla~l~~~~ 114 (166)
..-..+-++|++++..+.-|+
T Consensus 60 ~lEiiWTiiP~iil~~la~ps 80 (227)
T 1v54_B 60 EVETIWTILPAIILILIALPS 80 (227)
T ss_dssp THHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEeeehHHHHHHHHHHHHH
Confidence 333447778888777664443
No 5
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=16.56 E-value=1.2e+02 Score=24.59 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHhcCC
Q 031087 98 YFLIAACFVLSLILNEK 114 (166)
Q Consensus 98 ~~li~p~~vla~l~~~~ 114 (166)
.+.++|++++.++.-|+
T Consensus 78 iWTiiP~iILi~la~pS 94 (262)
T 2gsm_B 78 AWTIVPIVILVAIGAFS 94 (262)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHH
Confidence 36777777776665444
No 6
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=13.21 E-value=1.4e+02 Score=24.87 Aligned_cols=16 Identities=13% Similarity=0.166 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHhcCC
Q 031087 99 FLIAACFVLSLILNEK 114 (166)
Q Consensus 99 ~li~p~~vla~l~~~~ 114 (166)
+.++|++++.++.-|+
T Consensus 110 WTiiP~iILi~La~pS 125 (298)
T 3hb3_B 110 WTLVPVLILVAIGAFS 125 (298)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6667777666654444
No 7
>2fm8_C Cell invasion protein SIPA; type III secretion, chaperone, translocation, protein foldin virulence, bacterial, chaperone-cell invasion C; 2.20A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=11.50 E-value=92 Score=25.26 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q 031087 125 SIYLEAVAILPQLV 138 (166)
Q Consensus 125 Si~LEsvAILPQL~ 138 (166)
+==||.+|++|||.
T Consensus 219 aR~Le~~AviP~LL 232 (240)
T 2fm8_C 219 ARHLEMQTLIPLLL 232 (240)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHH
Confidence 34589999999985
No 8
>2fm9_A Cell invasion protein SIPA; type II secretion, virulence, bacterial, C invasion; 2.00A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=10.17 E-value=81 Score=25.25 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHH
Q 031087 127 YLEAVAILPQLV 138 (166)
Q Consensus 127 ~LEsvAILPQL~ 138 (166)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T 2fm9_A 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 478899999985
No 9
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=9.88 E-value=72 Score=23.12 Aligned_cols=10 Identities=10% Similarity=0.385 Sum_probs=8.1
Q ss_pred ccccccchhh
Q 031087 27 KSCSGISLKT 36 (166)
Q Consensus 27 kS~~GiSlkT 36 (166)
|||.|++++.
T Consensus 10 KSc~g~~l~~ 19 (136)
T 2exn_A 10 AECGATTQSE 19 (136)
T ss_dssp TTTEEECCGG
T ss_pred ccCCceecCc
Confidence 7888888876
No 10
>2k37_A Chlorosome protein A; bacteriochlorophyll, chlorophyll, chromophore, electron transport, magnesium, metal-binding, photosynthesis, transport; NMR {Chlorobium tepidum}
Probab=9.30 E-value=90 Score=20.30 Aligned_cols=11 Identities=0% Similarity=0.226 Sum_probs=9.8
Q ss_pred HHHHHHHHHHH
Q 031087 122 WAFSIYLEAVA 132 (166)
Q Consensus 122 WtFSi~LEsvA 132 (166)
|++|.++|+++
T Consensus 27 ~~vg~~le~~g 37 (59)
T 2k37_A 27 ETVGMLFDSLG 37 (59)
T ss_dssp HHHHHHTGGGT
T ss_pred HHHHHHHHHHH
Confidence 78999999986
Done!