BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031091
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 59 GGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEV 118
GGG M ++ Q + D R F+ + +GI L S ++ DAD LR + +
Sbjct: 307 GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLRRLIGDE 366
Query: 119 ICDSGSERRQYEEALIAI-TIDESLKRYCQRI 149
+ + R+ E ++A+ T E+++R +RI
Sbjct: 367 SLRTAA--REVREEMVALPTPAETVRRIVERI 396
>pdb|3BY4|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
Length = 212
Score = 33.1 bits (74), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 18/90 (20%)
Query: 72 SVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEE 131
SV V D CLF A+ G+ + RD RE M KEV+ + ++ +
Sbjct: 21 SVHPVLDDNSCLFHAIAYGIFKQDSV----RDLRE------MVSKEVL----NNPVKFND 66
Query: 132 ALIAITIDESLKRYCQRIGRSDFWGGESEL 161
A++ D+ K Y Q I + + WGG E+
Sbjct: 67 AIL----DKPNKDYAQWILKMESWGGAIEI 92
>pdb|3C0R|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3C0R|C Chain C, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
Length = 212
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 20/91 (21%)
Query: 72 SVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAV-KEVICDSGSERRQYE 130
SV V D CLF A+ G+ +++ DLR V KEV+ + ++
Sbjct: 21 SVHPVLDDNSCLFHAIAYGIF-----------KQDSVRDLREXVSKEVL----NNPVKFN 65
Query: 131 EALIAITIDESLKRYCQRIGRSDFWGGESEL 161
+A++ D+ K Y Q I + + WGG E+
Sbjct: 66 DAIL----DKPNKDYAQWILKXESWGGAIEI 92
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
Length = 398
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 59 GGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEV 118
GGG ++ Q + D R F+ + +GI L S ++ DAD LR + +
Sbjct: 307 GGGGTVXTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLRRLIGDE 366
Query: 119 ICDSGSERRQYEEALIAITIDESLKRYCQRI 149
+ + R EE + T E+++R +RI
Sbjct: 367 SLRTAA-REVREEXVALPTPAETVRRIVERI 396
>pdb|3CFD|H Chain H, Purple-fluorescent Antibody Ep2-25c10 In Complex With Its
Stilbene Hapten
pdb|3CFD|B Chain B, Purple-fluorescent Antibody Ep2-25c10 In Complex With Its
Stilbene Hapten
pdb|3CFE|H Chain H, Crystal Structure Of Purple-Fluorescent Antibody Ep2-25c10
pdb|3CFE|B Chain B, Crystal Structure Of Purple-Fluorescent Antibody Ep2-25c10
Length = 220
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 124 SERRQYEEALIAITIDESLKRYCQR-----IGRSDFWGGESELLVST 165
+ + Q+ L ++T +++ YC R GR D+WG + + VS+
Sbjct: 74 TSKNQFFLQLNSVTTEDTATYYCARSDYGNYGRGDYWGQGTSVTVSS 120
>pdb|1BOB|A Chain A, Histone Acetyltransferase Hat1 From Saccharomyces
Cerevisiae In Complex With Acetyl Coenzyme A
Length = 320
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 78 GDGRCLFRALVKGMALNKGIT-LNSRDEREDADDLR 112
G G CL+ A+++ +K IT + D E DDLR
Sbjct: 230 GHGSCLYEAIIQSWLEDKSITEITVEDPNEAFDDLR 265
>pdb|1IGY|B Chain B, Structure Of Immunoglobulin
pdb|1IGY|D Chain D, Structure Of Immunoglobulin
Length = 434
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 133 LIAITIDESLKRYCQRIGRSDFWGGESELLVST 165
L ++T D+S YC R G +WG + + VS+
Sbjct: 82 LSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSS 114
>pdb|2Y36|H Chain H, Crystal Structure Analysis Of The Anti-(4-Hydroxy-3-
Nitrophenyl)- Acetyl Murine Germline Antibody Bbe6.12h3
Fab Fragment In Complex With A Phage Display Derived
Dodecapeptide Dlwttaiptips
Length = 220
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 133 LIAITIDESLKRYCQRI---GRS--DFWGGESELLVST 165
L ++T ++S YC R G S D+WGG++ L VS+
Sbjct: 83 LSSLTSEDSAVYYCARYDYYGGSYFDYWGGQTTLTVSS 120
>pdb|3PSE|A Chain A, Structure Of A Viral Otu Domain Protease Bound To
Interferon- Stimulated Gene 15 (Isg15)
Length = 171
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 62 SPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICD 121
+P + + + R GDG C + ++ + NK D +K +
Sbjct: 22 NPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNK------------TDHSYHYIKRLT-- 67
Query: 122 SGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESE 160
+ R+ Y+E A + SL+ Y +R+ + WG E
Sbjct: 68 ESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLE 106
>pdb|4AEH|H Chain H, Crystal Structure Of The Anti-Aahi Fab9c2 Antibody
Length = 231
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 133 LIAITIDESLKRYCQRI----GRSDFWGGESELLVST 165
L ++T D+S YC R G D+WG + L VS+
Sbjct: 83 LSSLTSDDSAVYYCARYDGDYGSFDYWGQGTTLTVSS 119
>pdb|2JIX|D Chain D, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
pdb|2JIX|F Chain F, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
pdb|2JIX|H Chain H, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
Length = 217
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 124 SERRQYEEALIAITIDESLKRYC--QRIGRSDFWGGESELLVST 165
+ + Q+ L ++T ++ YC +R+G D+WG + + VS+
Sbjct: 73 TSKNQFSLKLRSVTAADTAVYYCARERLGIGDYWGQGTLVTVSS 116
>pdb|3BBN|M Chain M, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 145
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 23/126 (18%)
Query: 17 VAKFELVSSPVASISNP-------NSQTFPT----AFHRDSNNLFFARIGPPLGGGSPAM 65
+A +VS P+A+ S P +S +FP + RIG G P
Sbjct: 1 MATLSMVSVPIATSSLPLSARGRSSSVSFPAPKKGGIGHGGLQIECIRIG---GVEIPNH 57
Query: 66 KKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDE-----REDADDLRMAV---KE 117
K+VE YS+Q + G GR R ++ + + +T + +E R++ R+A+ KE
Sbjct: 58 KRVE-YSLQYIHGIGRSRSRQILLDLNFDNKVTKDLSEEEVIILRKEKRFNRVAIERLKE 116
Query: 118 VICDSG 123
+ C G
Sbjct: 117 IRCYRG 122
>pdb|3PHW|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|C Chain C, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|E Chain E, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|G Chain G, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHX|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Isg15
Length = 185
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 62 SPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICD 121
+P + + + R GDG C + ++ + NK D +K +
Sbjct: 22 NPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNK------------TDHSYHYIKRLT-- 67
Query: 122 SGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESE 160
+ R+ Y+E A + SL+ Y +R+ + WG E
Sbjct: 68 ESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLE 106
>pdb|3PRP|A Chain A, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|C Chain C, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
Length = 178
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 62 SPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICD 121
+P + + + R GDG C + ++ + NK D +K +
Sbjct: 20 NPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNK------------TDHSYHYIKRLT-- 65
Query: 122 SGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESE 160
+ R+ Y+E A + SL+ Y +R+ + WG E
Sbjct: 66 ESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLE 104
>pdb|3ZNH|A Chain A, Crimean Congo Hemorrhagic Fever Virus Otu Domain In
Complex With Ubiquitin-propargyl
Length = 183
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 62 SPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICD 121
+P + + + R GDG C + ++ + NK D +K +
Sbjct: 20 NPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNK------------TDHSYHYIKRLT-- 65
Query: 122 SGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESE 160
+ R+ Y+E A + SL+ Y +R+ + WG E
Sbjct: 66 ESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLE 104
>pdb|4IB2|A Chain A, Crystal Structure Of A Putative Lipoprotein (rumgna_00858)
From Ruminococcus Gnavus Atcc 29149 At 1.76 A Resolution
pdb|4IB2|B Chain B, Crystal Structure Of A Putative Lipoprotein (rumgna_00858)
From Ruminococcus Gnavus Atcc 29149 At 1.76 A Resolution
Length = 252
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 67 KVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRD----EREDADDLRMAVKEVICDS 122
++E V RVTG+ + L AL G ++ ++D E+ D++ + V +
Sbjct: 160 ELEAAQVARVTGE--TAYVVLNGNYALEAGYSV-AKDALAYEKSDSEAAKTYVNIIAVKE 216
Query: 123 GSERRQYEEALIAITIDESLKRYCQR 148
G+E+ + +AL+ + +K Y ++
Sbjct: 217 GNEKEEKIQALVKALKSDEIKEYIEK 242
>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii
Length = 1015
Score = 26.6 bits (57), Expect = 7.2, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 42 FHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGI 97
F D+N G PLGG S A ++E +R+ D R L +G+ NK +
Sbjct: 806 FIEDANTRLTLLTGQPLGGSSLASGELEIXQDRRLASDDE---RGLGQGVLDNKPV 858
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,765,689
Number of Sequences: 62578
Number of extensions: 184109
Number of successful extensions: 380
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 23
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)