BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031091
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana
GN=At3g57810 PE=2 SV=1
Length = 317
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 71 YSVQRVTGDGRCLFRALVKGMALNKG-ITLNSRDEREDADDLRMAVKEVICDSGSERRQY 129
YS+ + GDGRCLFR++ G L G + + +RE AD+LR V D +RRQ
Sbjct: 168 YSIIGIPGDGRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRV----ADEFIQRRQE 223
Query: 130 EEALIAITIDESLKRYCQRIGRSDFWGGESELLVST 165
E + D Y ++I WGGE EL +++
Sbjct: 224 TEWFVEGDFDT----YVRQIRDPHVWGGEPELFMAS 255
>sp|P22856|VL96_IRV1 Putative ubiquitin thioesterase L96 OS=Tipula iridescent virus
GN=L96 PE=3 SV=1
Length = 867
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 71 YSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVK-------EVICDSG 123
Y V V GDG CLFRA+ K + LN+ I + D R + K E + +SG
Sbjct: 606 YKVIPVKGDGNCLFRAVGKSLRLNQNIKYSHEDLRAQVVTYLTSHKEFLEPYLEYVTESG 665
Query: 124 SERRQYEEALIAITIDESLKRYCQRIGRSDFWG 156
Q E A ++++RY + I + WG
Sbjct: 666 DTTPQ-EYA-------KNVERYIKNISKPGTWG 690
>sp|Q196X6|VF232_IIV3 Putative ubiquitin thioesterase 232R OS=Invertebrate iridescent
virus 3 GN=IIV3-084L PE=3 SV=1
Length = 844
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 71 YSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYE 130
Y+V++V+GDG CLFR++ K + +G R LR V + + ++ + Y
Sbjct: 590 YTVKQVSGDGNCLFRSVCKSIRALRGEKFTHR-------QLRQMVVDYLRENPEFLQVYL 642
Query: 131 EALIAITIDESL---KRYCQRIGRSDFWG 156
E +A D SL ++Y + + WG
Sbjct: 643 E-YVARQRDNSLPSTEQYLSEMSKCGTWG 670
>sp|P43558|OTU1_YEAST Ubiquitin thioesterase OTU1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=OTU1 PE=1 SV=1
Length = 301
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 18/90 (20%)
Query: 72 SVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEE 131
SV V D CLF A+ G+ + RD RE M KEV+ + ++ +
Sbjct: 110 SVHPVLDDNSCLFHAIAYGIFKQDSV----RDLRE------MVSKEVL----NNPVKFND 155
Query: 132 ALIAITIDESLKRYCQRIGRSDFWGGESEL 161
A++ D+ K Y Q I + + WGG E+
Sbjct: 156 AIL----DKPNKDYAQWILKMESWGGAIEI 181
>sp|A0PQ89|RLMN_MYCUA Probable dual-specificity RNA methyltransferase RlmN
OS=Mycobacterium ulcerans (strain Agy99) GN=rlmN PE=3
SV=1
Length = 364
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 110 DLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQR 148
+L A +EV CD+G R+ A +T++ L RY QR
Sbjct: 77 NLLTAAREVTCDAGQTRKTLWRATDGVTVESVLMRYPQR 115
>sp|Q05B57|OTU1_BOVIN Ubiquitin thioesterase OTU1 OS=Bos taurus GN=YOD1 PE=2 SV=1
Length = 348
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 76 VTGDGRCLFRAL---VKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEA 132
V D CLF ++ V+G LN A ++R + +++ S+ Y EA
Sbjct: 154 VPADNSCLFTSVYYVVEGGVLNPAC----------APEMRRFIAQIV---ASDPDFYSEA 200
Query: 133 LIAITIDESLKRYCQRIGRSDFWGGESELLV 163
++ T +E YC I R D WGG E+ +
Sbjct: 201 ILGKTNEE----YCDWIKRDDTWGGAIEISI 227
>sp|Q32Q05|OTU1_RAT Ubiquitin thioesterase OTU1 OS=Rattus norvegicus GN=Yod1 PE=2 SV=1
Length = 343
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 76 VTGDGRCLFRAL---VKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEA 132
V D CLF ++ V+G LN A ++R + +++ S+ Y EA
Sbjct: 149 VPADNSCLFTSVYYVVEGGVLNPAC----------APEMRRLIAQIV---ASDPDLYSEA 195
Query: 133 LIAITIDESLKRYCQRIGRSDFWGGESELLV 163
++ T +E YC I R D WGG E+ +
Sbjct: 196 ILGKTNEE----YCDWIRRDDTWGGAIEISI 222
>sp|Q29FC9|OTU1_DROPS Ubiquitin thioesterase OTU1 OS=Drosophila pseudoobscura
pseudoobscura GN=GA18292 PE=3 SV=1
Length = 358
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 76 VTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAV-KEVICDSGSERRQYEEALI 134
V D CLF ++ LN + + E ++ +R + +EV D+ +QY +A++
Sbjct: 166 VPADNSCLFTSI--------RFVLNGKVDNEGSEMMRHIIAQEVSADT----QQYNDAVL 213
Query: 135 AITIDESLKRYCQRIGRSDFWGGESELLV 163
+S YC I ++D WGG E+ +
Sbjct: 214 G----KSNSDYCAWIQKADSWGGAIEVSI 238
>sp|Q5VVQ6|OTU1_HUMAN Ubiquitin thioesterase OTU1 OS=Homo sapiens GN=YOD1 PE=1 SV=1
Length = 348
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 76 VTGDGRCLFRAL---VKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEA 132
V D CLF ++ V+G LN A ++R + +++ S+ Y EA
Sbjct: 154 VPADNSCLFTSVYYVVEGGVLNPAC----------APEMRRLIAQIV---ASDPDFYSEA 200
Query: 133 LIAITIDESLKRYCQRIGRSDFWGGESELLV 163
++ T E YC I R D WGG E+ +
Sbjct: 201 ILGKTNQE----YCDWIKRDDTWGGAIEISI 227
>sp|B2HJP3|RLMN_MYCMM Probable dual-specificity RNA methyltransferase RlmN
OS=Mycobacterium marinum (strain ATCC BAA-535 / M)
GN=rlmN PE=3 SV=1
Length = 364
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 110 DLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQR 148
+L A +EV CD+G R+ A +T++ L RY QR
Sbjct: 77 NLLTAAREVTCDAGQTRKTLWRATDGVTLESVLMRYPQR 115
>sp|Q73VR8|RLMN_MYCPA Probable dual-specificity RNA methyltransferase RlmN
OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 /
K-10) GN=rlmN PE=3 SV=1
Length = 364
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 111 LRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQR 148
L A EV CD+G R+ AL +T++ L RY R
Sbjct: 78 LLTAASEVTCDAGQTRKTLWRALDGVTVESVLMRYPHR 115
>sp|Q8CB27|OTU1_MOUSE Ubiquitin thioesterase OTU1 OS=Mus musculus GN=Yod1 PE=1 SV=1
Length = 343
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 76 VTGDGRCLFRAL---VKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEA 132
V D CLF ++ V+G LN A ++R + +++ S+ Y EA
Sbjct: 149 VPADNSCLFTSVYYVVEGGVLNPAC----------APEMRRLIAQIV---ASDPVLYSEA 195
Query: 133 LIAITIDESLKRYCQRIGRSDFWGGESELLV 163
++ T ++ YC I R D WGG E+ +
Sbjct: 196 ILGKTNED----YCDWIRRDDTWGGAIEISI 222
>sp|Q9VRJ9|OTU1_DROME Ubiquitin thioesterase OTU1 OS=Drosophila melanogaster GN=CG4603
PE=2 SV=1
Length = 347
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 17/89 (19%)
Query: 76 VTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAV-KEVICDSGSERRQYEEALI 134
V D CLF ++ LN + + E ++ +R + +EV D S Y +A++
Sbjct: 155 VPADNSCLFTSI--------RFVLNGKVDNEGSEMMRHIIAQEVAADPQS----YNDAVL 202
Query: 135 AITIDESLKRYCQRIGRSDFWGGESELLV 163
+S YC I ++D WGG E+ +
Sbjct: 203 G----KSNAEYCAWIQKADSWGGAIEVSI 227
>sp|P38747|OTU2_YEAST OTU domain-containing protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=OTU2 PE=1 SV=1
Length = 307
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 28/123 (22%)
Query: 59 GGGSPAMKKVERYSVQR-----------VTGDGRCLFRALVKGMALNKGITLNSRDERED 107
P +KK+E+ S+ + + DG CLF +++ + L ++ D
Sbjct: 144 ASKQPDLKKMEQESIDQLCELKKLKQFDIQPDGHCLFASILDQLKLRHDP------KKLD 197
Query: 108 ADDLRMAVKEVICDSGSERRQ----Y---EEALIAITIDESLKRYCQRIGRSDFWGGESE 160
D M ++ + C+ E R Y EE + IDE Y + + + WGGE E
Sbjct: 198 QDMDVMKLRWLSCNYVQEHRDDFIPYLFDEETMKMKDIDE----YTKEMEHTAQWGGEIE 253
Query: 161 LLV 163
+L
Sbjct: 254 ILA 256
>sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1
Length = 293
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 25/106 (23%)
Query: 66 KKVERY-SVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGS 124
K VER+ ++ ++ DG C++RA V+ +G+ L +KE+ +
Sbjct: 141 KLVERHLQIKEISSDGHCMYRA-VEHQLTERGLAL--------------GLKELRDQTAQ 185
Query: 125 ERRQYEEALIAITID---------ESLKRYCQRIGRSDFWGGESEL 161
R + + + + E ++YC + + WGG+ EL
Sbjct: 186 YMRSHADDFMPFLTNPNTGDMYTAEEFEKYCSDVADTAAWGGQLEL 231
>sp|Q5ALR8|AMN1_CANAL Antagonist of mitotic exit network protein 1 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=AMN1 PE=3 SV=1
Length = 658
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 20 FELVSSPVASISNPNSQTFPTAFHRDSNNL 49
FEL P S+ P SQTF F SNNL
Sbjct: 370 FELYMCPKISLDKPQSQTFMKIFQSCSNNL 399
>sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain
M41) GN=1a PE=1 SV=1
Length = 3953
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 24 SSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCL 83
SS VA+I++ N +F ++ N + + PP G KVE + + + R +
Sbjct: 3711 SSVVAAITSSNPNLKVASFLNEAGNQIYVDLDPPCKFGMKVGDKVEVVYLYFIK-NTRSI 3769
Query: 84 FRALVKGMALNKGITLNSR-DEREDAD 109
R +V G A++ + L S+ E E+ D
Sbjct: 3770 VRGMVLG-AISNVVVLQSKGHETEEVD 3795
>sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious bronchitis virus
(strain M41) GN=rep PE=1 SV=1
Length = 6631
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 24 SSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCL 83
SS VA+I++ N +F ++ N + + PP G KVE + + + R +
Sbjct: 3711 SSVVAAITSSNPNLKVASFLNEAGNQIYVDLDPPCKFGMKVGDKVEVVYLYFIK-NTRSI 3769
Query: 84 FRALVKGMALNKGITLNSR-DEREDAD 109
R +V G A++ + L S+ E E+ D
Sbjct: 3770 VRGMVLG-AISNVVVLQSKGHETEEVD 3795
>sp|Q03MV9|PNP_STRTD Polyribonucleotide nucleotidyltransferase OS=Streptococcus
thermophilus (strain ATCC BAA-491 / LMD-9) GN=pnp PE=3
SV=1
Length = 741
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 6 TEGILEQL--RLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSP 63
T ILE+ + VA+FE++ ++I+ P S+ PTA DS + +I +G G
Sbjct: 518 TPAILEEALAQAKVARFEILDVIESAIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGE 577
Query: 64 AMKKV 68
+ K+
Sbjct: 578 TIDKI 582
>sp|Q5M6F9|PNP_STRT2 Polyribonucleotide nucleotidyltransferase OS=Streptococcus
thermophilus (strain ATCC BAA-250 / LMG 18311) GN=pnp
PE=3 SV=1
Length = 741
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 6 TEGILEQL--RLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSP 63
T ILE+ + VA+FE++ ++I+ P S+ PTA DS + +I +G G
Sbjct: 518 TPAILEEALAQAKVARFEILDVIESAIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGE 577
Query: 64 AMKKV 68
+ K+
Sbjct: 578 TIDKI 582
>sp|Q5M1W9|PNP_STRT1 Polyribonucleotide nucleotidyltransferase OS=Streptococcus
thermophilus (strain CNRZ 1066) GN=pnp PE=3 SV=1
Length = 741
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 6 TEGILEQL--RLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSP 63
T ILE+ + VA+FE++ ++I+ P S+ PTA DS + +I +G G
Sbjct: 518 TPAILEEALAQAKVARFEILDVIESAIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGE 577
Query: 64 AMKKV 68
+ K+
Sbjct: 578 TIDKI 582
>sp|Q567B1|OTU1_DANRE Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1
Length = 301
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 76 VTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIA 135
V D CLF ++ + G+ + A ++R + +++ S+ Y EA++
Sbjct: 107 VPADNSCLFTSV--NYVMEGGVY-----DPACASEMRGLIAQIV---ASDPTAYSEAVLG 156
Query: 136 ITIDESLKRYCQRIGRSDFWGGESELLV 163
T +E YC I R D WGG E+ +
Sbjct: 157 KTNEE----YCTWIRRDDTWGGAIEVSI 180
>sp|Q0IH43|OTU1_XENLA Ubiquitin thioesterase OTU1 OS=Xenopus laevis GN=yod1 PE=2 SV=1
Length = 304
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 23/105 (21%)
Query: 62 SPAMKKVERYSVQRVTGDGRCLFRAL---VKGMALNKGITLNSRDEREDADDLRMAVKEV 118
+PA + R + V D CLF ++ V+G + L ++R + E+
Sbjct: 99 APAQPTIVR---RVVPADNSCLFTSIYYVVEGGVYDPACAL----------EMRSLIAEI 145
Query: 119 ICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 163
+ S++ Y +A++ +S + YC I R D WGG E+ +
Sbjct: 146 V---ASDQSAYCDAVLG----KSNEEYCSWIRREDTWGGAIEVSI 183
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,274,096
Number of Sequences: 539616
Number of extensions: 2464561
Number of successful extensions: 5260
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 5250
Number of HSP's gapped (non-prelim): 30
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)