Query 031091
Match_columns 166
No_of_seqs 137 out of 481
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:20:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3by4_A OTU1, ubiquitin thioest 99.9 1.5E-25 5E-30 184.0 6.4 79 69-165 18-96 (212)
2 3pfy_A OTU domain-containing p 99.9 6.7E-26 2.3E-30 183.4 4.0 79 69-165 57-135 (185)
3 3phx_A RNA-directed RNA polyme 99.9 2.9E-23 1E-27 167.5 6.4 90 62-165 22-111 (185)
4 3phu_A RNA-directed RNA polyme 99.9 7.7E-23 2.6E-27 169.3 5.4 89 63-165 23-111 (219)
5 1tff_A Ubiquitin thiolesterase 99.6 4E-15 1.4E-19 123.5 6.8 54 107-166 131-185 (234)
6 4dhi_B Ubiquitin thioesterase 99.3 1.1E-12 3.8E-17 112.3 4.9 52 108-165 170-222 (284)
7 4ddg_A Ubiquitin-conjugating e 99.3 1.2E-12 4.1E-17 115.5 5.3 52 108-165 300-352 (399)
8 2zfy_A Ubiquitin thioesterase 99.2 8.4E-12 2.9E-16 103.3 2.9 72 78-166 116-188 (234)
9 2zfy_A Ubiquitin thioesterase 96.0 0.0029 9.9E-08 52.0 2.4 22 72-93 44-65 (234)
10 3dkb_A Tumor necrosis factor, 89.9 0.29 9.8E-06 43.4 4.3 42 70-121 111-152 (390)
11 3zrh_A Ubiquitin thioesterase 77.8 1.3 4.3E-05 40.0 2.8 41 70-120 188-228 (454)
12 1tff_A Ubiquitin thiolesterase 41.0 5.6 0.00019 32.3 -0.0 51 79-133 114-164 (234)
13 2jn4_A Hypothetical protein FI 28.1 9.1 0.00031 27.2 -0.7 22 140-161 40-61 (87)
14 1nxh_A MTH396 protein; hypothe 20.5 76 0.0026 23.9 3.0 27 103-133 87-113 (126)
No 1
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.92 E-value=1.5e-25 Score=184.03 Aligned_cols=79 Identities=29% Similarity=0.570 Sum_probs=70.7
Q ss_pred CCcEEEEecCCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHHHh
Q 031091 69 ERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQR 148 (166)
Q Consensus 69 ~gl~I~~Ip~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC~~ 148 (166)
.+|.+++||+|||||||||++|| ... ..+.+||+.|++||+. +++.|.||+ ++++|++||++
T Consensus 18 ~~l~~~~i~~DGnCLFrAva~qL-~~~----------~~~~~lR~~vv~yi~~---n~d~f~e~~----~~~~~e~Y~~~ 79 (212)
T 3by4_A 18 NVLSVHPVLDDNSCLFHAIAYGI-FKQ----------DSVRDLREMVSKEVLN---NPVKFNDAI----LDKPNKDYAQW 79 (212)
T ss_dssp SEEEEECCCCSTTHHHHHHHHHH-HSS----------CCSHHHHHHHHHHHHH---CTTTTCHHH----HTSCHHHHHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHh-CCc----------hHHHHHHHHHHHHHHH---CHHHHhhhh----cCCCHHHHHHH
Confidence 37899999999999999999999 421 2367999999999995 788998887 67999999999
Q ss_pred hcCCCccccHHHHhhcc
Q 031091 149 IGRSDFWGGESELLVST 165 (166)
Q Consensus 149 I~~t~~WGGeiEL~ALS 165 (166)
|+++++|||+|||+|||
T Consensus 80 m~~~~~WGg~iEL~Als 96 (212)
T 3by4_A 80 ILKMESWGGAIEIGIIS 96 (212)
T ss_dssp TTSTTSCCCHHHHHHHH
T ss_pred hcCCCEEccHHHHHHHH
Confidence 99999999999999997
No 2
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=99.91 E-value=6.7e-26 Score=183.35 Aligned_cols=79 Identities=16% Similarity=0.379 Sum_probs=55.6
Q ss_pred CCcEEEEecCCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHHHh
Q 031091 69 ERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQR 148 (166)
Q Consensus 69 ~gl~I~~Ip~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC~~ 148 (166)
.||.+++||+|||||||||++||... ...+.+||+.|++||+. +++.|.+|+ +++|++||++
T Consensus 57 ~gL~~~~I~~DGnCLFrAia~qL~g~----------~~~h~~LR~~vv~yi~~---n~d~f~~Fv-----~~~~e~Y~~~ 118 (185)
T 3pfy_A 57 KGFIIKQMKEDGACLFRAVADQVYGD----------QDMHEVVRKHCMDYLMK---NADYFSNYV-----TEDFTTYINR 118 (185)
T ss_dssp HCCEEECCCCSTTHHHHHHHHHHHSC----------GGGHHHHHHHHHHHHHH---THHHHTTCC---------------
T ss_pred CCcEEEeeCCCCChHHHHHHHHHhCC----------chHHHHHHHHHHHHHHH---HHHHHHHHH-----hccHHHHHHH
Confidence 79999999999999999999999743 23578999999999995 789999884 5789999999
Q ss_pred hcCCCccccHHHHhhcc
Q 031091 149 IGRSDFWGGESELLVST 165 (166)
Q Consensus 149 I~~t~~WGGeiEL~ALS 165 (166)
|+++++|||+|||+|||
T Consensus 119 m~~~~~WGg~iEL~AlS 135 (185)
T 3pfy_A 119 KRKNNCHGNHIEMQAMA 135 (185)
T ss_dssp -------CCHHHHHHHH
T ss_pred hhCCCccchHHHHHHHH
Confidence 99999999999999997
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.88 E-value=2.9e-23 Score=167.49 Aligned_cols=90 Identities=21% Similarity=0.356 Sum_probs=71.5
Q ss_pred chhhhccCCcEEEEecCCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhh
Q 031091 62 SPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDES 141 (166)
Q Consensus 62 ~~~~~k~~gl~I~~Ip~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~ 141 (166)
.|......++.|.+||+|||||||||++||.... + ....+..+.+||+.|++||++ ++++ ++ ++++
T Consensus 22 ~p~~~~~~~~~v~rv~gDGnCLFrAva~qL~~~~--~--~~~~~~~~~~LR~~~~~yi~~---~~~~---~~----~~~~ 87 (185)
T 3phx_A 22 NPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNK--T--DHSYHYIKRLTESAARKYYQE---EPEA---RL----VGLS 87 (185)
T ss_dssp CCCCBHHHHEEEECCCSSTTHHHHHHHHHHSTTC--C--TTTHHHHHHHHHHHHHHHGGG---CTTH---HH----HCCC
T ss_pred CCCcccccCeEEEccCCCCchHHHHHHHHHhCCC--c--cchhhhHHHHHHHHHHHHHHh---ChHh---hh----cCCC
Confidence 3444445678999999999999999999997531 1 011233489999999999996 4444 33 6889
Q ss_pred HHHHHHhhcCCCccccHHHHhhcc
Q 031091 142 LKRYCQRIGRSDFWGGESELLVST 165 (166)
Q Consensus 142 feeYC~~I~~t~~WGGeiEL~ALS 165 (166)
|++||++|+++++|||++||+|||
T Consensus 88 ~~~Y~~~m~~~~~WGg~iEL~Als 111 (185)
T 3phx_A 88 LEDYLKRMLSDNEWGSTLEASMLA 111 (185)
T ss_dssp HHHHHHHHTSTTCCCBHHHHHHHH
T ss_pred HHHHHHHhhCCCccCcHHHHHHHH
Confidence 999999999999999999999997
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.87 E-value=7.7e-23 Score=169.33 Aligned_cols=89 Identities=21% Similarity=0.356 Sum_probs=70.8
Q ss_pred hhhhccCCcEEEEecCCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhH
Q 031091 63 PAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDESL 142 (166)
Q Consensus 63 ~~~~k~~gl~I~~Ip~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~f 142 (166)
|......+|.|++||+|||||||||++||.... . ....+..+.+||+.|++||+. |++. ++ ++++|
T Consensus 23 p~~~~~~~~~V~rvpgDGnCLFrAVs~qL~~~~--~--~~~~~~~h~~LR~~va~yi~~---n~d~---~~----~~~~f 88 (219)
T 3phu_A 23 PRFNISDYFEIVRQPGDGNCFYHSIAELTMPNK--T--DHSYHYIKRLTESAARKYYQE---EPEA---RL----VGLSL 88 (219)
T ss_dssp CCCBHHHHEEEECCCCSSCHHHHHHHHHHCTTC--C--TTTHHHHHHHHHHHHHHHGGG---CHHH---HH----HCCCH
T ss_pred CCcccccceEEEccCCCCchHHHHHHHHHhCCC--c--cchhhhHHHHHHHHHHHHHHh---Chhh---hh----cCCCH
Confidence 344444578899999999999999999996431 1 011233489999999999985 5555 33 68899
Q ss_pred HHHHHhhcCCCccccHHHHhhcc
Q 031091 143 KRYCQRIGRSDFWGGESELLVST 165 (166)
Q Consensus 143 eeYC~~I~~t~~WGGeiEL~ALS 165 (166)
++||++|+++++|||++||+|||
T Consensus 89 eeY~~~m~~~g~WGG~iEL~AlS 111 (219)
T 3phu_A 89 EDYLKRMLSDNEWGSTLEASMLA 111 (219)
T ss_dssp HHHHHHHHSTTCCCCHHHHHHHH
T ss_pred HHHHHHhcCCCccCCHHHHHHHH
Confidence 99999999999999999999997
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.56 E-value=4e-15 Score=123.52 Aligned_cols=54 Identities=9% Similarity=0.114 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHHH-hhcCCCccccHHHHhhccC
Q 031091 107 DADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQ-RIGRSDFWGGESELLVSTC 166 (166)
Q Consensus 107 ~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC~-~I~~t~~WGGeiEL~ALS~ 166 (166)
....||..++.||+. |+++|.||+. .+.+|++||+ .|+.+++|||++||+|||.
T Consensus 131 iv~~lR~lta~~i~~---~~d~f~pFi~---~~~~~~~yC~~~ve~~~~~~~~iei~ALa~ 185 (234)
T 1tff_A 131 IVQFLRLLTSAFIRN---RADFFRHFID---EEMDIKDFCTHEVEPMATECDHIQITALSQ 185 (234)
T ss_dssp HHHHHHHHHHHHHHH---THHHHGGGSC---TTSCHHHHHHHHTSSTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---CHHHHhhhhc---CCCCHHHHHHHHhhhhhcccccHHHHHHHH
Confidence 356799999999995 7899999972 2348999999 8999999999999999973
No 6
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.31 E-value=1.1e-12 Score=112.25 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHHH-hhcCCCccccHHHHhhcc
Q 031091 108 ADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQ-RIGRSDFWGGESELLVST 165 (166)
Q Consensus 108 a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC~-~I~~t~~WGGeiEL~ALS 165 (166)
...||..++.||+. |+++|.||+. .+.++++||+ +|+.+++|||+|||.||+
T Consensus 170 v~~LRllts~yi~~---~~d~f~pFi~---~~~~v~~yC~~eVe~~~~e~d~leI~ALa 222 (284)
T 4dhi_B 170 LMFFRLITSAFLKQ---NSEEYAPFID---EGMTVAQYCEQEIEPMWKDADHLAINSLI 222 (284)
T ss_dssp HHHHHHHHHHHHHH---THHHHGGGSC---TTCCHHHHHHHHTSSTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---CHHHHHhhcC---CCCCHHHHHHHhceehhhcccHHHHHHHH
Confidence 45899999999995 8999999973 2368999999 899999999999999997
No 7
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.31 E-value=1.2e-12 Score=115.46 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHHH-hhcCCCccccHHHHhhcc
Q 031091 108 ADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQ-RIGRSDFWGGESELLVST 165 (166)
Q Consensus 108 a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC~-~I~~t~~WGGeiEL~ALS 165 (166)
...||..++.||+. |+++|.+|+. .+.++++||+ +|+.++.|||++||.||+
T Consensus 300 v~~lRllts~~i~~---~~d~f~pFi~---~~~~v~~yc~~~ve~~~~e~d~l~I~ALa 352 (399)
T 4ddg_A 300 VVYLRLLTSGYLQR---ESKFFEHFIE---GGRTVKEFCQQEVEPMCKESDHIHIIALA 352 (399)
T ss_dssp HHHHHHHHHHHHHH---THHHHGGGSS---SSCCHHHHHHHHTSSTTCCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---CHHHHhcccC---CCCCHHHHHHHhceeHHhhCcHHHHHHHH
Confidence 55799999999995 8899999972 2358999999 999999999999999997
No 8
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.16 E-value=8.4e-12 Score=103.35 Aligned_cols=72 Identities=11% Similarity=0.082 Sum_probs=60.9
Q ss_pred CCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHHH-hhcCCCccc
Q 031091 78 GDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQ-RIGRSDFWG 156 (166)
Q Consensus 78 ~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC~-~I~~t~~WG 156 (166)
.||+||++++.+|+... .....||..++.||+. |+++|.||+. .+.+|++||+ .|+.+++||
T Consensus 116 ~~~~~L~~~fndq~~s~-----------~~v~~lR~lta~yi~~---~~d~f~pFi~---~~~~~e~yc~~~ve~~~~~~ 178 (234)
T 2zfy_A 116 TSVADLLASFNDQSTSD-----------YLVVYLRLLTSGYLQR---ESKFFEHFIE---GGRTVKEFCQQEVEPMCKES 178 (234)
T ss_dssp CCHHHHHHHHTSHHHHH-----------HHHHHHHHHHHHHHHH---THHHHGGGCC---SSCCHHHHHHHHTSSTTCCC
T ss_pred CCHHHHHHHHHhhccch-----------HHHHHHHHHHHHHHHH---CHHHHhcccC---CCCCHHHHHHHHhhhHhhcC
Confidence 39999999999997522 3577999999999995 8899999962 2359999997 599999999
Q ss_pred cHHHHhhccC
Q 031091 157 GESELLVSTC 166 (166)
Q Consensus 157 GeiEL~ALS~ 166 (166)
|++||.|||.
T Consensus 179 ~~i~i~ALa~ 188 (234)
T 2zfy_A 179 DHIHIIALAQ 188 (234)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999999973
No 9
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=95.98 E-value=0.0029 Score=51.95 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.0
Q ss_pred EEEEecCCCChhhHHHHHHHHH
Q 031091 72 SVQRVTGDGRCLFRALVKGMAL 93 (166)
Q Consensus 72 ~I~~Ip~DGnCLFrAIadQL~~ 93 (166)
.+.+|.|||||.|||++.+.-.
T Consensus 44 ~~R~vRgDGNCFyRaf~f~ylE 65 (234)
T 2zfy_A 44 YIRKTRPDGNCFYRAFGFSHLE 65 (234)
T ss_dssp EEECBCCSSCHHHHHHHHHHHH
T ss_pred ceeeccCCccHHHHHHHHHHHH
Confidence 5677999999999999998754
No 10
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=89.93 E-value=0.29 Score=43.38 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=32.4
Q ss_pred CcEEEEecCCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHhc
Q 031091 70 RYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICD 121 (166)
Q Consensus 70 gl~I~~Ip~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~~ 121 (166)
.|......||||||..|++-.|....... ..||+...+.|..
T Consensus 111 rL~pL~t~GDGnCLLHAvSqamWGv~Drd----------lvLRkaL~~~L~~ 152 (390)
T 3dkb_A 111 KLVALKTNGDGNCLMHATSQYMWGVQDTD----------LVLRKALFSTLKE 152 (390)
T ss_dssp CEEEBCCCCSSCHHHHHHHHHHHSSCSTT----------CHHHHHHHHHHHH
T ss_pred ceEEEEecCCCchHHHHHhHHhcCCCCHh----------HHHHHHHHHHHHh
Confidence 45566779999999999999998643332 3788888888875
No 11
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=77.76 E-value=1.3 Score=39.99 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=29.8
Q ss_pred CcEEEEecCCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHh
Q 031091 70 RYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVIC 120 (166)
Q Consensus 70 gl~I~~Ip~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~ 120 (166)
.|......||||||-.|++-.|...... -.-||+...+.|.
T Consensus 188 rL~pL~t~GDGNCLLHAvSqamWGV~Dr----------dlvLRkaL~~~L~ 228 (454)
T 3zrh_A 188 RLYALWNRTAGDCLLDSVLQATWGIYDK----------DSVLRKALHDSLH 228 (454)
T ss_dssp CEEEBCCCCSSCHHHHHHHHTTTSSCCG----------GGHHHHHHHHHHH
T ss_pred ceeEeeecCCCccHHHHHHHHhhcccCC----------cHHHHHHHHHHHH
Confidence 4556677999999999999988753221 2367777777775
No 12
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=40.97 E-value=5.6 Score=32.25 Aligned_cols=51 Identities=8% Similarity=-0.100 Sum_probs=36.6
Q ss_pred CCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHhcccCCchhhHHHH
Q 031091 79 DGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEAL 133 (166)
Q Consensus 79 DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl 133 (166)
|++||++++.+|.....-. .-.|..++.+||.+..+|....... ..+.+|.
T Consensus 114 ~~~~L~~~fnd~~~s~~iv---~~lR~lta~~i~~~~d~f~pFi~~~-~~~~~yC 164 (234)
T 1tff_A 114 SVSSLLKVFNDQSASDHIV---QFLRLLTSAFIRNRADFFRHFIDEE-MDIKDFC 164 (234)
T ss_dssp CHHHHHHHHTSHHHHHHHH---HHHHHHHHHHHHHTHHHHGGGSCTT-SCHHHHH
T ss_pred CHHHHHHHHhcccchhhHH---HHHHHHHHHHHHHCHHHHhhhhcCC-CCHHHHH
Confidence 9999999999987643111 2356778999999999999886432 2455553
No 13
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=28.09 E-value=9.1 Score=27.23 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=16.1
Q ss_pred hhHHHHHHhhcCCCccccHHHH
Q 031091 140 ESLKRYCQRIGRSDFWGGESEL 161 (166)
Q Consensus 140 e~feeYC~~I~~t~~WGGeiEL 161 (166)
++.|+=+-.|++++.|||.+.|
T Consensus 40 KDLEE~VVs~E~~~~WGG~vtL 61 (87)
T 2jn4_A 40 KDLEELIVEMENPALWGGKVTL 61 (87)
T ss_dssp TTEEEEEEEESSSSSCSSEEEE
T ss_pred CcchhheeeeecccccCcEEEE
Confidence 4445555567899999998876
No 14
>1nxh_A MTH396 protein; hypothetical protein, disulfide bonds, homodimer, structural genomics, PSI, protein structure initiative; 2.80A {Methanothermobacterthermautotrophicus} SCOP: a.200.1.1
Probab=20.47 E-value=76 Score=23.86 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=22.7
Q ss_pred chhhhHHHHHHHHHHHHhcccCCchhhHHHH
Q 031091 103 DEREDADDLRMAVKEVICDSGSERRQYEEAL 133 (166)
Q Consensus 103 ~~~~~a~eLR~~vad~I~~~~~~r~~f~efl 133 (166)
..+.+|+.+|.+|++.|. +...|.+++
T Consensus 87 iSk~dAd~ir~kv~~~i~----~~k~Y~~Al 113 (126)
T 1nxh_A 87 ISVDDAEALKDEITELVL----AGREYSEAL 113 (126)
T ss_dssp SCHHHHHHHHHHHHHHHH----TTCCHHHHH
T ss_pred ccHhHHHHHHHHHHHHHH----cCCcHHHHH
Confidence 346789999999999997 567899986
Done!