Query 031094
Match_columns 166
No_of_seqs 111 out of 345
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 14:23:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031094.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031094hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3ehbb2 f.17.2.1 (B:1-107) Bac 41.9 15 0.0011 24.3 4.2 16 99-114 81-96 (107)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 40.3 17 0.0012 23.5 4.2 16 99-114 75-90 (100)
3 d1v54b2 f.17.2.1 (B:1-90) Mito 39.5 15 0.0011 23.7 3.7 19 96-114 62-80 (90)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 24.4 6.2 0.00045 25.6 -0.4 47 65-114 27-81 (91)
5 d2exna1 b.165.1.1 (A:1-128) Hy 10.7 27 0.002 23.4 0.1 11 26-36 9-19 (128)
6 d2fm9a1 a.257.1.1 (A:49-263) C 10.1 38 0.0028 25.3 0.8 12 127-138 195-206 (215)
7 d1dq3a3 d.95.2.2 (A:129-226) P 4.7 1.4E+02 0.0099 19.2 1.3 13 145-157 80-92 (98)
8 d1ekra_ d.58.21.1 (A:) Molybde 4.3 1.1E+02 0.0083 21.3 0.7 20 142-161 98-118 (146)
9 d1sfua_ a.4.5.19 (A:) 34L {Yab 3.6 2.1E+02 0.015 17.5 1.5 30 116-147 26-55 (70)
10 d2c52b1 a.153.1.1 (B:303-353) 3.5 3.3E+02 0.024 15.5 2.3 14 132-145 12-25 (51)
No 1
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=41.94 E-value=15 Score=24.27 Aligned_cols=16 Identities=13% Similarity=0.166 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHhcCC
Q 031094 99 FLIAACFVLSLILNEK 114 (166)
Q Consensus 99 ~li~p~~vla~l~~~~ 114 (166)
+-++|++++..+.-|+
T Consensus 81 WTviP~lIL~~laipS 96 (107)
T d3ehbb2 81 WTLVPVLILVAIGAFS 96 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666665554443
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=40.27 E-value=17 Score=23.52 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHhcCC
Q 031094 99 FLIAACFVLSLILNEK 114 (166)
Q Consensus 99 ~li~p~~vla~l~~~~ 114 (166)
+-++|++++..+.-|+
T Consensus 75 WTviP~lILi~l~~pS 90 (100)
T d3dtub2 75 WTIVPIVILVAIGAFS 90 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777776665544
No 3
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=39.52 E-value=15 Score=23.67 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=11.6
Q ss_pred cchhhHHHHHHHHHHhcCC
Q 031094 96 RHYFLIAACFVLSLILNEK 114 (166)
Q Consensus 96 ~~~~li~p~~vla~l~~~~ 114 (166)
-..+-++|+++|..+--|+
T Consensus 62 EiiWTiiP~lILi~ia~PS 80 (90)
T d1v54b2 62 ETIWTILPAIILILIALPS 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3446677777766665555
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=24.38 E-value=6.2 Score=25.60 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccc------ccccch--hhHHHHHHHHHHhcCC
Q 031094 65 LVFIASSLAIVWCMRMHRAVRRTYDKEL------DTFRHY--FLIAACFVLSLILNEK 114 (166)
Q Consensus 65 i~~i~~s~~iiyli~~~~~~~~Ty~~~~------Dtf~~~--~li~p~~vla~l~~~~ 114 (166)
++++...+.++|.+. |||+.-+++. .+-+++ +-++|++++..+.-|+
T Consensus 27 iv~v~V~~~~~~~~~---ryR~~~~~~~~~~~~~~n~~lEi~WtiIP~iil~~iav~s 81 (91)
T d1fftb2 27 IVVIPAILMAVGFAW---KYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLT 81 (91)
T ss_dssp TTTTHHHHHHHTTTT---TTTTSTTTCSSCCCCCCCSHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhe---eeeccCCccCCCCcccCCceehhhHHHHHHHHHHHHHHHH
Confidence 344455555566553 6665433221 122222 6678888877665544
No 5
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]}
Probab=10.70 E-value=27 Score=23.44 Aligned_cols=11 Identities=9% Similarity=0.332 Sum_probs=8.4
Q ss_pred hccccccchhh
Q 031094 26 TKSCSGISLKT 36 (166)
Q Consensus 26 ~kS~~GiSlkT 36 (166)
=|||.|+|+..
T Consensus 9 IKsc~g~~~~~ 19 (128)
T d2exna1 9 IAECGATTQSE 19 (128)
T ss_dssp ETTTEEECCGG
T ss_pred ccccCCccccc
Confidence 48999998753
No 6
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=10.14 E-value=38 Score=25.28 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHH
Q 031094 127 YLEAVAILPQLV 138 (166)
Q Consensus 127 ~LEsvAILPQL~ 138 (166)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T d2fm9a1 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 468899999985
No 7
>d1dq3a3 d.95.2.2 (A:129-226) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=4.67 E-value=1.4e+02 Score=19.20 Aligned_cols=13 Identities=31% Similarity=0.605 Sum_probs=10.0
Q ss_pred CccchHHHHHHHH
Q 031094 145 NVDNLTGQYVFFL 157 (166)
Q Consensus 145 ~ve~lTshYv~~L 157 (166)
++.++||||+=.|
T Consensus 80 kar~itshy~~ll 92 (98)
T d1dq3a3 80 KARNITSHYLKLL 92 (98)
T ss_dssp CCHHHHHHHHHHH
T ss_pred eecccHHHHHHHH
Confidence 4678999998654
No 8
>d1ekra_ d.58.21.1 (A:) Molybdenum cofactor biosynthesis protein C, MoaC {Escherichia coli [TaxId: 562]}
Probab=4.31 E-value=1.1e+02 Score=21.27 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.2
Q ss_pred hhC-CccchHHHHHHHHHHHH
Q 031094 142 RSG-NVDNLTGQYVFFLGYVC 161 (166)
Q Consensus 142 k~g-~ve~lTshYv~~Lg~yR 161 (166)
||| |-|.+|+--+++|-+|=
T Consensus 98 kTGVEMEALtavsva~LTiYD 118 (146)
T d1ekra_ 98 KTGVEMEALTAASVAALTIYD 118 (146)
T ss_dssp SSCCHHHHHHHHHHHHHHHHH
T ss_pred CCceehHHHHHHHHHHHHHHH
Confidence 566 88899999999888873
No 9
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=3.61 E-value=2.1e+02 Score=17.47 Aligned_cols=30 Identities=27% Similarity=0.193 Sum_probs=23.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Q 031094 116 TFQEIFWAFSIYLEAVAILPQLVLLQRSGNVD 147 (166)
Q Consensus 116 ~~~eilWtFSi~LEsvAILPQL~ml~k~g~ve 147 (166)
+..++++.+.+ +-=-|=+||+-+||+|.+-
T Consensus 26 tA~~LAk~Lg~--~Kk~VNr~LY~L~~~G~v~ 55 (70)
T d1sfua_ 26 TAISLSNRLKI--NKKKINQQLYKLQKEDTVK 55 (70)
T ss_dssp CHHHHHHHTTC--CHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHhCC--CHHHHHHHHHHHHHCCCee
Confidence 45677777774 6667789999999998764
No 10
>d2c52b1 a.153.1.1 (B:303-353) Nuclear receptor coactivator 1, NCOA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.54 E-value=3.3e+02 Score=15.46 Aligned_cols=14 Identities=36% Similarity=0.439 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhCC
Q 031094 132 AILPQLVLLQRSGN 145 (166)
Q Consensus 132 AILPQL~ml~k~g~ 145 (166)
|++-||..+-+..+
T Consensus 12 ALLdQL~t~L~n~D 25 (51)
T d2c52b1 12 ALLEQLVSFLSGKD 25 (51)
T ss_dssp HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhcCc
Confidence 78899998775543
Done!