Query 031095
Match_columns 166
No_of_seqs 112 out of 1060
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 14:24:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_J 60S ribosomal protein L 100.0 3.7E-71 1.3E-75 440.8 11.0 165 1-166 1-166 (166)
2 2zkr_i 60S ribosomal protein L 100.0 1.5E-70 5.3E-75 437.0 5.9 165 1-166 1-165 (165)
3 1vq8_I 50S ribosomal protein L 100.0 8.3E-65 2.8E-69 403.0 7.1 149 11-162 3-153 (162)
4 3j21_H 50S ribosomal protein L 100.0 2.7E-64 9.4E-69 400.7 3.3 150 11-163 4-156 (164)
5 1mms_A Protein (ribosomal prot 100.0 1.3E-60 4.4E-65 371.3 14.1 136 8-146 3-140 (140)
6 3bbo_K Ribosomal protein L11; 100.0 8.9E-61 3E-65 394.5 13.7 152 1-155 66-221 (224)
7 2ftc_G L11MT, MRP-L11, 39S rib 100.0 4.4E-59 1.5E-63 364.5 14.9 135 9-146 4-145 (145)
8 3egv_B 50S ribosomal protein L 100.0 3.4E-60 1.2E-64 371.1 7.7 140 8-150 2-143 (146)
9 3r8s_I 50S ribosomal protein L 100.0 4.6E-60 1.6E-64 368.5 -9.6 137 7-146 2-141 (141)
10 1wib_A 60S ribosomal protein L 100.0 3.9E-39 1.3E-43 234.7 4.0 86 1-87 7-92 (92)
11 3cjs_B 50S ribosomal protein L 100.0 2E-32 6.7E-37 191.4 7.5 69 7-76 2-72 (72)
12 1hc8_A Ribosomal protein L11; 100.0 1.2E-31 4.1E-36 189.2 5.6 75 70-146 1-76 (76)
13 1qa6_A Ribosomal protein L11; 99.9 5.3E-28 1.8E-32 166.9 4.5 66 75-142 2-67 (67)
14 1t3u_A Conserved hypothetical 31.2 26 0.00088 24.3 2.2 28 60-87 6-33 (104)
15 1win_A Flotillin 2; BAND 7 dom 29.1 10 0.00035 27.8 -0.3 49 101-158 79-134 (143)
16 2xzm_U Ribosomal protein L7AE 27.0 14 0.00048 27.0 0.1 38 123-162 5-42 (126)
17 2k87_A Non-structural protein 26.3 56 0.0019 24.1 3.3 34 40-75 30-65 (116)
18 3r8n_M 30S ribosomal protein S 25.8 40 0.0014 24.5 2.4 36 75-118 25-60 (114)
19 2vqe_J 30S ribosomal protein S 23.7 15 0.0005 26.0 -0.3 29 118-146 8-36 (105)
20 3d3c_J 30S ribosomal protein S 21.4 6.8 0.00023 27.3 -2.4 31 116-146 13-43 (87)
No 1
>3iz5_J 60S ribosomal protein L12 (L11P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_J
Probab=100.00 E-value=3.7e-71 Score=440.83 Aligned_cols=165 Identities=90% Similarity=1.310 Sum_probs=125.6
Q ss_pred CCCCCCCCceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhc-cCCCceeEEEEEEecCceEEEEeCChH
Q 031095 1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK-DWKGLRVTVKLTVQNRQAKVAVVPSAA 79 (166)
Q Consensus 1 m~~k~~~~~~~~ikl~v~aG~A~p~PplGp~LG~~Gin~~~fck~fN~~T~~-~~~g~~ipV~Itv~drsf~~~v~Ppts 79 (166)
||||||++++++|+|+|+||+|+|+|||||+|||+|||+|+||++||++| + +|+|++|||+|||+||||+|+++||+|
T Consensus 1 m~~k~dp~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T-~~~~~G~~IpV~itV~dRsf~f~v~Ppas 79 (166)
T 3iz5_J 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKET-AKDWKGLRVTVKLTVQNRQAKVSVVPSAA 79 (166)
T ss_dssp -----------CEEEEECTTCCCCHHHHSTTCCTTTSCSSSHHHHHHHHH-CSSCSCSCEEEEEEEETTEEEEECTTTTH
T ss_pred CCCCCCCCceEEEEEEEecCcccCCCCcchhhccCCCCHHHHHHHHHHHh-cccCCCCeEeEEEEEcCCeEEEEEcCcHH
Confidence 99999999999999999999999999999999999999999999999999 7 999999999999999999998899999
Q ss_pred HHHHHHhCCCCcCccCccCcceeeeecHHHHHHHHHHhcccCCCcChhhhhhhhhhcccceeeEecCCChHhHHHhhhCc
Q 031095 80 ALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKIMRPRSMAKELSGTVKEILGTCVSVGCTVDGKDPKDLQQEINDG 159 (166)
Q Consensus 80 ~likka~g~~~~~~k~~~~~~~~G~it~~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~~~P~e~~~~i~~g 159 (166)
|||+||||+++|+++++++++|+|+||++||||||+.|++|+++++|+++||+|+||||||||+|+|++|+|++++||+|
T Consensus 80 ~Ll~Ka~g~~~gs~~~~k~i~~vG~it~~qi~eIA~~K~~dl~a~~l~~avk~IlGTArSmGi~V~g~~p~~v~~~i~~G 159 (166)
T 3iz5_J 80 ALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDG 159 (166)
T ss_dssp HHHHHHHTCCSCCSSTTTSCSSCCCCCHHHHHHHHHHHTTTSCCSCHHHHHHHHHHHSCC--------------------
T ss_pred HHHHHhcCCCCCCCCCCCccceeeEEeHHHHHHHHHHHHhhhcccCHHHHHHHhHheeeeeeEEEecCCHHHHHHHHhCC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCC
Q 031095 160 DVEIPLD 166 (166)
Q Consensus 160 ~~~~~~~ 166 (166)
+|+||+.
T Consensus 160 ~~~~~~~ 166 (166)
T 3iz5_J 160 EVEIPSA 166 (166)
T ss_dssp -------
T ss_pred CEeCCCC
Confidence 9999973
No 2
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K 1s1i_K
Probab=100.00 E-value=1.5e-70 Score=436.99 Aligned_cols=165 Identities=70% Similarity=1.139 Sum_probs=70.5
Q ss_pred CCCCCCCCceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhccCCCceeEEEEEEecCceEEEEeCChHH
Q 031095 1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAA 80 (166)
Q Consensus 1 m~~k~~~~~~~~ikl~v~aG~A~p~PplGp~LG~~Gin~~~fck~fN~~T~~~~~g~~ipV~Itv~drsf~~~v~Ppts~ 80 (166)
||||+|++++++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++| ++|+|++|||+|||.||||+|+++||+||
T Consensus 1 m~~k~~~~~~~~ikL~v~aG~A~p~PplGPaLG~~Gvni~~fck~fN~~T-~~~~G~~ipV~Itv~drsf~f~vtPpas~ 79 (165)
T 2zkr_i 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKAT-GDWKGLRITVKLTIQNRQAQIEVVPSASA 79 (165)
T ss_dssp -----------------------------------------------------------------------CCCCCCHHH
T ss_pred CCCCCCCCeeEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEcCCeeeEEECCCHHH
Confidence 89999999999999999999999999999999999999999999999999 99999999999999999999988999999
Q ss_pred HHHHHhCCCCcCccCccCcceeeeecHHHHHHHHHHhcccCCCcChhhhhhhhhhcccceeeEecCCChHhHHHhhhCce
Q 031095 81 LVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKIMRPRSMAKELSGTVKEILGTCVSVGCTVDGKDPKDLQQEINDGD 160 (166)
Q Consensus 81 likka~g~~~~~~k~~~~~~~~G~it~~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~~~P~e~~~~i~~g~ 160 (166)
||+||||+++|++++.++.+++|+||++||||||+.|++|+++++|+++||+|+||||||||+|+++||+||+++||+|+
T Consensus 80 Ll~kaag~~~gs~k~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g~~P~ev~~~I~~G~ 159 (165)
T 2zkr_i 80 LIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGA 159 (165)
T ss_dssp HHHHHHTCSSCCSSTTTCSSCSEEECHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHTEEEC---------------
T ss_pred HHHHHhCCCCCCcccccCceEEeeEeHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHhCeeEEeCCCHHHHHHHHhCCC
Confidence 99999999999987555557999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCC
Q 031095 161 VEIPLD 166 (166)
Q Consensus 161 ~~~~~~ 166 (166)
||||++
T Consensus 160 ~~~p~~ 165 (165)
T 2zkr_i 160 VECPAS 165 (165)
T ss_dssp ------
T ss_pred eeCCCC
Confidence 999985
No 3
>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.4.7.1 PDB: 1vq4_I* 1vq5_I* 1vq6_I* 1vq7_I* 1s72_I* 1vq9_I* 1vqk_I* 1vql_I* 1vqm_I* 1vqn_I* 1vqo_I* 1vqp_I* 1yhq_I* 1yi2_I* 1yij_I* 1yit_I* 1yj9_I* 1yjn_I* 1yjw_I* 2otl_I* ...
Probab=100.00 E-value=8.3e-65 Score=402.99 Aligned_cols=149 Identities=25% Similarity=0.527 Sum_probs=67.0
Q ss_pred EEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhccCCCceeEEEEEEe-cCceEEEE-eCChHHHHHHHhCC
Q 031095 11 VDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ-NRQAKVAV-VPSAAALVIKALKE 88 (166)
Q Consensus 11 ~~ikl~v~aG~A~p~PplGp~LG~~Gin~~~fck~fN~~T~~~~~g~~ipV~Itv~-drsf~~~v-~Ppts~likka~g~ 88 (166)
++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++| ++|+|++|||+|||| ||||+|++ +||+||||+||||+
T Consensus 3 ~~ikL~v~aG~A~p~PplGPaLG~~Gvni~~fck~fN~~T-~~~~G~~ipV~Itv~~drsf~f~vk~Ppas~Ll~kaagi 81 (162)
T 1vq8_I 3 GTIEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQT-AAFDGTEVPVTVKYDDDGSFEIEVGVPPTAELIKDEAGF 81 (162)
T ss_dssp -----------------------------------------------------------------CCCCHHHHHHHTTSC
T ss_pred eEEEEEeecCccCCCCCcccccccCCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHHhCC
Confidence 5799999999999999999999999999999999999999 999999999999999 99999999 99999999999999
Q ss_pred CCcCccCccCcceeeeecHHHHHHHHHHhcccCCCcChhhhhhhhhhcccceeeEecCCChHhHHHhhhCceee
Q 031095 89 PERDRKKTKNIKHNGNITLDDVIEIAKIMRPRSMAKELSGTVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVE 162 (166)
Q Consensus 89 ~~~~~k~~~~~~~~G~it~~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~~~P~e~~~~i~~g~~~ 162 (166)
.+|++.++++ ++|+||++||||||+.|++|+++++|+++||+|+||||||||+|++++|+|++++||+|+|+
T Consensus 82 ~kgs~~p~k~--~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g~~p~~vi~~I~~g~~~ 153 (162)
T 1vq8_I 82 ETGSGEPQED--FVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIEGENPREFKERIDAGEYD 153 (162)
T ss_dssp CSCCSSTTTS--CCEEECHHHHHHHHHHTTTTCCCSSHHHHHHHHHHHTTTTTEEEC-----------------
T ss_pred CCCCCCCCCc--eeeeeeHHHHHHHHHHHHHhhcccCHHHHHHHHHhhhHhCeEEEeccCHHHHHHhcChhhHH
Confidence 9998888775 99999999999999999999999999999999999999999999999999999999999997
No 4
>3j21_H 50S ribosomal protein L11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.7e-64 Score=400.69 Aligned_cols=150 Identities=38% Similarity=0.640 Sum_probs=124.6
Q ss_pred EEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhccCCCceeEEEEEE-e-cCceEEEE-eCChHHHHHHHhC
Q 031095 11 VDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTV-Q-NRQAKVAV-VPSAAALVIKALK 87 (166)
Q Consensus 11 ~~ikl~v~aG~A~p~PplGp~LG~~Gin~~~fck~fN~~T~~~~~g~~ipV~Itv-~-drsf~~~v-~Ppts~likka~g 87 (166)
++|+|+|+||+|+|+|||||+|||+|||+|+||++||++| ++|+|++|||+||| | ||||+|++ +||+||||+||||
T Consensus 4 ~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T-~~~~G~~IpV~ItV~~~dRsf~f~vk~Ppas~Ll~Ka~g 82 (164)
T 3j21_H 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEAT-KDFAGMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELG 82 (164)
T ss_dssp SSSCEEEESSCCCCHHHHHHHCCCSSSCTTHHHHHHHHHH-CCSSCCEEEECBCCCTTTCCCCBCCSSSSSTTHHHHHHC
T ss_pred eEEEEEEecCccCCCCCcchhhcccCCcHHHHHHHHHHHH-hhcCCCeeEEEEEEecCCceEEEEEcCCCHHHHHHHHhC
Confidence 4789999999999999999999999999999999999999 99999999999999 8 99999999 9999999999999
Q ss_pred CCCcCccCccCcceeeeecHHHHHHHHHHhcccCCCcChhhhhhhhhhcccceeeEecCCChHhHHHhhhCceeec
Q 031095 88 EPERDRKKTKNIKHNGNITLDDVIEIAKIMRPRSMAKELSGTVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEI 163 (166)
Q Consensus 88 ~~~~~~k~~~~~~~~G~it~~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~~~P~e~~~~i~~g~~~~ 163 (166)
+.+|++.++++ ++|+||++||||||+.|++|+++++|+++||+|+||||||||+|+|++|+|++++||+|+|+-
T Consensus 83 ~~kgs~~p~k~--~vG~it~~qi~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g~~p~~v~~~i~~G~~~~ 156 (164)
T 3j21_H 83 LEKGSGEPKHN--IVGNLTMEQVIKIAKMKKDQMLALTLKAAAKEVIGTALSMGVTVEGKDPREVQKEIDEGVYDE 156 (164)
T ss_dssp CCSCCSSTTTC--CSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHCCC----------------------
T ss_pred CCCCCCCCCCc--eeeeeeHHHHHHHHHHHHhhhcccCHHHHHHHHHHHhhcceEEEeccCHHHHHHHhccccHHH
Confidence 99999888875 999999999999999999999999999999999999999999999999999999999999974
No 5
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L
Probab=100.00 E-value=1.3e-60 Score=371.28 Aligned_cols=136 Identities=24% Similarity=0.339 Sum_probs=129.3
Q ss_pred CceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhccCCCceeEEEEEEe-cCceEEEE-eCChHHHHHHH
Q 031095 8 SQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ-NRQAKVAV-VPSAAALVIKA 85 (166)
Q Consensus 8 ~~~~~ikl~v~aG~A~p~PplGp~LG~~Gin~~~fck~fN~~T~~~~~g~~ipV~Itv~-drsf~~~v-~Ppts~likka 85 (166)
++.++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++| ++|+|++|||+|||| ||||+|++ +||+||||+||
T Consensus 3 ~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~fck~fN~~T-~~~~G~~ipV~itv~~drsf~f~vk~Ppas~Ll~ka 81 (140)
T 1mms_A 3 KVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAET-ADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKA 81 (140)
T ss_dssp ----CEEEEEETTCCCCTTTTTHHHHTTTCCHHHHHHHHHHHT-TTSCSSEEEEEEEECTTSCEEEEECCCCHHHHHHHH
T ss_pred ceEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHh-hhcCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHH
Confidence 5678999999999999999999999999999999999999999 999999999999999 99999999 99999999999
Q ss_pred hCCCCcCccCccCcceeeeecHHHHHHHHHHhcccCCCcChhhhhhhhhhcccceeeEecC
Q 031095 86 LKEPERDRKKTKNIKHNGNITLDDVIEIAKIMRPRSMAKELSGTVKEILGTCVSVGCTVDG 146 (166)
Q Consensus 86 ~g~~~~~~k~~~~~~~~G~it~~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~ 146 (166)
||+++|+++|+++ ++|+||++||||||+.|++|+++++|+++||+|+||||||||+|++
T Consensus 82 ~g~~~gs~~p~k~--~vG~it~~qi~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g 140 (140)
T 1mms_A 82 AGIEKGSSEPKRK--IVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD 140 (140)
T ss_dssp HTCSSCCSSTTTS--CCEEECHHHHHHHHHHHGGGCCCSSHHHHHHHHHHHHTTTTEEEC-
T ss_pred hCCCCCCCCCCCe--EeeeEcHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHcCeeEeeC
Confidence 9999999999886 9999999999999999999999999999999999999999999985
No 6
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=8.9e-61 Score=394.50 Aligned_cols=152 Identities=22% Similarity=0.333 Sum_probs=138.2
Q ss_pred CCCCCCC--CceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhccCCCceeEEEEEEe-cCceEEEE-eC
Q 031095 1 MPPKFDP--SQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ-NRQAKVAV-VP 76 (166)
Q Consensus 1 m~~k~~~--~~~~~ikl~v~aG~A~p~PplGp~LG~~Gin~~~fck~fN~~T~~~~~g~~ipV~Itv~-drsf~~~v-~P 76 (166)
||||+++ +++++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++| ++|+|++|||+|||| ||+|+|++ +|
T Consensus 66 M~pk~~~akkv~~~IkL~v~aGkA~PaPPlGPaLG~~GVNim~FcK~fN~~T-~d~~Gl~IPV~ITV~~DRsf~f~vktP 144 (224)
T 3bbo_K 66 MAPKPGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNART-ADKPGFVIPVEITVFDDKSFTFILKTP 144 (224)
T ss_dssp -CCSCCCCCCCSSEEEECCBTTBCCCSTTTTTTTTTTSSCTTSSHHHHHHHG-GGSCSSBCCEEEEECSSSCEEEEECCC
T ss_pred cCCCCCCccceEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHh-cccCCCeEEEEEEEccCCeEEEEecCC
Confidence 8999887 8899999999999999999999999999999999999999999 899999999999999 99999999 99
Q ss_pred ChHHHHHHHhCCCCcCccCccCcceeeeecHHHHHHHHHHhcccCCCcChhhhhhhhhhcccceeeEecCCChHhHHHh
Q 031095 77 SAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKIMRPRSMAKELSGTVKEILGTCVSVGCTVDGKDPKDLQQE 155 (166)
Q Consensus 77 pts~likka~g~~~~~~k~~~~~~~~G~it~~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~~~P~e~~~~ 155 (166)
|+||||+||||+++|+++|+++ ++|+||++||||||++|++|+++++|+++||+|+||||||||+|++.+|++--+.
T Consensus 145 paS~LLkKAagi~kGs~kp~~~--~vG~IT~~qV~eIAk~K~~dl~a~~Le~avK~IlGTArSMGi~V~g~~p~~~~~~ 221 (224)
T 3bbo_K 145 PASVLLLKASGAEKGSKDPQME--KVGKITIDQLRGIATEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILVKKKKE 221 (224)
T ss_dssp CTTHHHHHHHTCSSCCSSTTTS--CCEEECHHHHHHHHHHTCTTSCCSSHHHHHHHHHHHHTTTTEEEC----------
T ss_pred CHHHHHHHHhCCCCCCCCCCCc--eeeeecHHHHHHHHHHHHhhhcCcCHHHHHHHHHHHHHhCeeEEeCCCCChhhcc
Confidence 9999999999999999998875 9999999999999999999999999999999999999999999999998875443
No 7
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G
Probab=100.00 E-value=4.4e-59 Score=364.48 Aligned_cols=135 Identities=26% Similarity=0.349 Sum_probs=130.3
Q ss_pred ceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhccCC-CceeEEEEEEe-cCceEEEE-eCChHHHHHHH
Q 031095 9 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWK-GLRVTVKLTVQ-NRQAKVAV-VPSAAALVIKA 85 (166)
Q Consensus 9 ~~~~ikl~v~aG~A~p~PplGp~LG~~Gin~~~fck~fN~~T~~~~~-g~~ipV~Itv~-drsf~~~v-~Ppts~likka 85 (166)
..++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++| ++|+ |++|||+|||| ||||+|++ +||+||||+||
T Consensus 4 ~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~fck~fN~~T-~~~~~G~~ipV~Itv~~drsf~f~vk~Ppas~Ll~ka 82 (145)
T 2ftc_G 4 VGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERT-KDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAA 82 (145)
T ss_pred eEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHH-hhhcCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHH
Confidence 478999999999999999999999999999999999999999 9986 99999999999 99999999 99999999999
Q ss_pred hCCCCcCccCccCcceeeeecHHHHHHHHHHhccc--CCC--cChhhhhhhhhhcccceeeEecC
Q 031095 86 LKEPERDRKKTKNIKHNGNITLDDVIEIAKIMRPR--SMA--KELSGTVKEILGTCVSVGCTVDG 146 (166)
Q Consensus 86 ~g~~~~~~k~~~~~~~~G~it~~~v~eIAk~K~~d--~~~--~~l~~~~k~VlGTa~SmGi~V~~ 146 (166)
||+++|+++|+++ ++|+||++||||||+.|++| |++ ++|+++||+|+||||||||+|++
T Consensus 83 ag~~~gs~~p~~~--~vG~it~~qv~eIA~~K~~d~~l~a~~~~l~~a~k~I~GTArSmGi~V~~ 145 (145)
T 2ftc_G 83 AGIEKGARQTGKE--VAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVK 145 (145)
T ss_pred hCCCCCCCCCCCc--CcceEcHHHHHHHHHHhCcchhccCccCCHHHHHHHHHHHHhcCeEEEeC
Confidence 9999999999775 99999999999999999997 999 99999999999999999999974
No 8
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; post-translational modification, multiple methyltransferase; HET: SAH 4MM; 1.75A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A 2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K 2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K 2xtg_K ...
Probab=100.00 E-value=3.4e-60 Score=371.05 Aligned_cols=140 Identities=24% Similarity=0.330 Sum_probs=72.0
Q ss_pred CceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhccCCCceeEEEEEEe-cCceEEEE-eCChHHHHHHH
Q 031095 8 SQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ-NRQAKVAV-VPSAAALVIKA 85 (166)
Q Consensus 8 ~~~~~ikl~v~aG~A~p~PplGp~LG~~Gin~~~fck~fN~~T~~~~~g~~ipV~Itv~-drsf~~~v-~Ppts~likka 85 (166)
++.++|+|+|+||+|+|+|||||+|||+|||+|+||++||++| ++|+|++|||+|||| ||||+|++ +||+||||+||
T Consensus 2 ~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T-~~~~G~~ipV~itv~~drsf~~~~~~Ppas~Ll~Ka 80 (146)
T 3egv_B 2 KVVAVVKLQLPAGAATPAPPVGPALGQHGANIMEFVKAFNAAT-ANMGDAIVPVEITIYADRSFTFVTKTPPASYLIRKA 80 (146)
T ss_dssp CEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHT-TTSTTCEEEEEEEEETTSCEEEEECCCCHHHHC---
T ss_pred ceEEEEEEEEecccccCCCCcchhhcccCCCHHHHHHHHHHHh-cccCCCEeeEEEEEeCCCeEEEEEeCCCHHHHHHHh
Confidence 5789999999999999999999999999999999999999999 899999999999999 99999966 99999999999
Q ss_pred hCCCCcCccCccCcceeeeecHHHHHHHHHHhcccCCCcChhhhhhhhhhcccceeeEecCCChH
Q 031095 86 LKEPERDRKKTKNIKHNGNITLDDVIEIAKIMRPRSMAKELSGTVKEILGTCVSVGCTVDGKDPK 150 (166)
Q Consensus 86 ~g~~~~~~k~~~~~~~~G~it~~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~~~P~ 150 (166)
||+++|+..|++ +++|+||++||||||+.|++|+++++|+++||+|+||||||||+|+|.||.
T Consensus 81 ~g~~~gs~~p~~--~~vG~it~~qi~eIA~~K~~d~~a~~l~~a~k~I~GTA~SmGi~V~g~~~~ 143 (146)
T 3egv_B 81 AGLEKGAHKPGR--EKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARSMGVEVVGAPEV 143 (146)
T ss_dssp -----------------------------------------------------------------
T ss_pred hCCCCCCCCCCC--eeeeeecHHHHHHHHHHHhhhhcccCHHHHHHHhHhhhhcCeEEEECCCcC
Confidence 999999887765 499999999999999999999999999999999999999999999999875
No 9
>3r8s_I 50S ribosomal protein L11; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I* 2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ...
Probab=100.00 E-value=4.6e-60 Score=368.49 Aligned_cols=137 Identities=23% Similarity=0.332 Sum_probs=131.9
Q ss_pred CCceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhccCC-CceeEEEEEEe-cCceEEEE-eCChHHHHH
Q 031095 7 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWK-GLRVTVKLTVQ-NRQAKVAV-VPSAAALVI 83 (166)
Q Consensus 7 ~~~~~~ikl~v~aG~A~p~PplGp~LG~~Gin~~~fck~fN~~T~~~~~-g~~ipV~Itv~-drsf~~~v-~Ppts~lik 83 (166)
+++.++|+|+|+||+|+|+|||||+|||+|||+|+||++||++| ++|+ |++|||+|||| ||||+|++ +||+||||+
T Consensus 2 kk~~~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T-~~~k~G~~ipV~itv~~drsf~f~vk~Ppas~Ll~ 80 (141)
T 3r8s_I 2 KKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKT-DSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLK 80 (141)
T ss_dssp CCCSCCCCCCSCSSSSSCTTTTCTTSSSSSCCSSSTTTTGGGTH-HHHCSCSCCCBCCCCSSSSSCCCCBCCCCSSTTTT
T ss_pred ceEEEEEEEEEecCccCCCCCcchhhccCCCCHHHHHHHHHHHH-hcccCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHH
Confidence 46788999999999999999999999999999999999999999 9975 99999999999 99999999 999999999
Q ss_pred HHhCCCCcCccCccCcceeeeecHHHHHHHHHHhcccCCCcChhhhhhhhhhcccceeeEecC
Q 031095 84 KALKEPERDRKKTKNIKHNGNITLDDVIEIAKIMRPRSMAKELSGTVKEILGTCVSVGCTVDG 146 (166)
Q Consensus 84 ka~g~~~~~~k~~~~~~~~G~it~~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~ 146 (166)
||||+++|+++|++ +++|+||++||||||+.|++|+++++|+++||+|+||||||||+|+|
T Consensus 81 ka~g~~~gs~~p~~--~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g 141 (141)
T 3r8s_I 81 KAAGIKSGSGKPNK--DKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED 141 (141)
T ss_dssp SSSSCSSCCSSTTT--SCCSCCCSSTTSTTTSCCSSCCSCSCTTTTTTTSTTTSSSSCCCCCC
T ss_pred HHhCCCCCCCCCCC--cEeeEecHHHHHHHHHHHHhhhcCcCHHHHHHHHHHhhhcceEEEeC
Confidence 99999999999866 49999999999999999999999999999999999999999999986
No 10
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1
Probab=100.00 E-value=3.9e-39 Score=234.67 Aligned_cols=86 Identities=71% Similarity=1.090 Sum_probs=84.3
Q ss_pred CCCCCCCCceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhccCCCceeEEEEEEecCceEEEEeCChHH
Q 031095 1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAA 80 (166)
Q Consensus 1 m~~k~~~~~~~~ikl~v~aG~A~p~PplGp~LG~~Gin~~~fck~fN~~T~~~~~g~~ipV~Itv~drsf~~~v~Ppts~ 80 (166)
||||+|++++++|+|+|+||+|+|+|||||+|||+|||+|+||++||++| ++|+|++|||+||||||||+|+++||+|+
T Consensus 7 M~pk~~p~~~~~ikL~v~aG~A~p~pplgPaLG~~Glni~~f~k~fn~~T-~~~kG~~ipV~itv~drsf~~~v~PpaS~ 85 (92)
T 1wib_A 7 GPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKAT-GDWKGLRITVKLTIQNRQAQIEVVPSASA 85 (92)
T ss_dssp CCCCCCSSSCEEEEEEEETTCCCCSSCSHHHHTTTCSCHHHHHHHHHHHT-TTTTTSEEEEEEEEETTEEECCBCSCCCC
T ss_pred CCCCCCCCeEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEeCCeeEEEEcCCHHH
Confidence 89999999999999999999999999999999999999999999999999 99999999999999999999988999999
Q ss_pred HHHHHhC
Q 031095 81 LVIKALK 87 (166)
Q Consensus 81 likka~g 87 (166)
||+|++|
T Consensus 86 Ll~k~~~ 92 (92)
T 1wib_A 86 LSGPSSG 92 (92)
T ss_dssp CCCCSCC
T ss_pred HHHHhcC
Confidence 9999876
No 11
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A
Probab=99.97 E-value=2e-32 Score=191.43 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=66.3
Q ss_pred CCceEEEEEEEeccccCCCCCCccccCCCCCChhhHHHHHHHHhhccCCCceeEEEEEEe-cCceEEEE-eC
Q 031095 7 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ-NRQAKVAV-VP 76 (166)
Q Consensus 7 ~~~~~~ikl~v~aG~A~p~PplGp~LG~~Gin~~~fck~fN~~T~~~~~g~~ipV~Itv~-drsf~~~v-~P 76 (166)
++..++|+|+|+||+|+|+|||||+|||+|||+|+||++||++| ++|+|++|||+|||| ||||+|++ +|
T Consensus 2 k~~~~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T-~~~~G~~ipV~Itv~~drsf~~~~ktP 72 (72)
T 3cjs_B 2 KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAAT-ANMGDAIVPVEITIYADRSFTFVTKTP 72 (72)
T ss_dssp CCEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHH-GGGCSCEEEEEEEEETTSCEEEEECCC
T ss_pred cceEEEEEEEEecCccCCCCCccchhcccCCCHHHHHHHHHHHH-hhcCCCeEeEEEEEeCCCeEEEEEcCC
Confidence 36789999999999999999999999999999999999999999 999999999999999 99999988 66
No 12
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=99.97 E-value=1.2e-31 Score=189.18 Aligned_cols=75 Identities=28% Similarity=0.333 Sum_probs=70.9
Q ss_pred eEEEE-eCChHHHHHHHhCCCCcCccCccCcceeeeecHHHHHHHHHHhcccCCCcChhhhhhhhhhcccceeeEecC
Q 031095 70 AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKIMRPRSMAKELSGTVKEILGTCVSVGCTVDG 146 (166)
Q Consensus 70 f~~~v-~Ppts~likka~g~~~~~~k~~~~~~~~G~it~~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~ 146 (166)
|+|++ +||+||||+||||+++|+++|+++ ++|+||++||||||+.|++|+++.+|+++||+|+||||||||+|++
T Consensus 1 f~f~~ktPpas~Ll~kaagi~kgs~~p~~~--~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~~ 76 (76)
T 1hc8_A 1 FTFITKTPPAAVLLKKAAGIESGSGEPNRN--KVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGIVVEN 76 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHTCSCCCSSTTTC--CCEEECHHHHHHHHHHSGGGCCCSSHHHHHHHHHHHHHHHTEEEC-
T ss_pred CEEEEcCCCHHHHHHHHhCCCCCCCCCCCc--EeeeecHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCeeEeeC
Confidence 78877 999999999999999999999876 9999999999999999999999999999999999999999999985
No 13
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Probab=99.94 E-value=5.3e-28 Score=166.85 Aligned_cols=66 Identities=30% Similarity=0.360 Sum_probs=64.1
Q ss_pred eCChHHHHHHHhCCCCcCccCccCcceeeeecHHHHHHHHHHhcccCCCcChhhhhhhhhhcccceee
Q 031095 75 VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKIMRPRSMAKELSGTVKEILGTCVSVGC 142 (166)
Q Consensus 75 ~Ppts~likka~g~~~~~~k~~~~~~~~G~it~~~v~eIAk~K~~d~~~~~l~~~~k~VlGTa~SmGi 142 (166)
+||+||||+||||+++|+++|+++ ++|+||++||||||+.|++|+++.+|+++||+|+||||||||
T Consensus 2 tPpas~Ll~kaagi~kgs~~p~~~--~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi 67 (67)
T 1qa6_A 2 TPPAAVLLKKAAGIESGSGEPNRN--KVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGI 67 (67)
T ss_dssp CSCHHHHHHHHHTCSCCCCTTSSC--CCCCCTTTHHHHHHHHHGGGCCCSSHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHhCCCCCCCCCCCc--ccceecHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHhcCC
Confidence 799999999999999999999875 999999999999999999999999999999999999999997
No 14
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=31.17 E-value=26 Score=24.32 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=21.8
Q ss_pred EEEEEEecCceEEEEeCChHHHHHHHhC
Q 031095 60 TVKLTVQNRQAKVAVVPSAAALVIKALK 87 (166)
Q Consensus 60 pV~Itv~drsf~~~v~Ppts~likka~g 87 (166)
.|+|+|++++|.+...+.--..|.+++.
T Consensus 6 ~v~V~I~G~~Y~l~~~~~~ee~l~~aA~ 33 (104)
T 1t3u_A 6 TLTVQILDKEYCINCPDDERANLESAAR 33 (104)
T ss_dssp CEEEEETTEEEEECCCTTTHHHHHHHHH
T ss_pred eEEEEECCEEEEeeCCCCCHHHHHHHHH
Confidence 5899999999999776655666667764
No 15
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=29.13 E-value=10 Score=27.81 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=31.6
Q ss_pred eeeeecHHHHHHHHHHhcccCCCcChhhhhhhhh-hcccceeeEecC------CChHhHHHhhhC
Q 031095 101 HNGNITLDDVIEIAKIMRPRSMAKELSGTVKEIL-GTCVSVGCTVDG------KDPKDLQQEIND 158 (166)
Q Consensus 101 ~~G~it~~~v~eIAk~K~~d~~~~~l~~~~k~Vl-GTa~SmGi~V~~------~~P~e~~~~i~~ 158 (166)
.+|..|+++++. -|.+ |...++..+ -.+..+|++|+. .+|.+|++++..
T Consensus 79 viG~~tldeils-~R~~--------i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~ 134 (143)
T 1win_A 79 ILGTLTVEQIYQ-DRDQ--------FAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGK 134 (143)
T ss_dssp HHHHSCHHHHHH-THHH--------HHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCC
T ss_pred HHhcCCHHHHHH-HHHH--------HHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHH
Confidence 479999999988 2211 223333333 334669999985 468888887754
No 16
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=26.97 E-value=14 Score=27.05 Aligned_cols=38 Identities=8% Similarity=0.204 Sum_probs=31.4
Q ss_pred CcChhhhhhhhhhcccceeeEecCCChHhHHHhhhCceee
Q 031095 123 AKELSGTVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVE 162 (166)
Q Consensus 123 ~~~l~~~~k~VlGTa~SmGi~V~~~~P~e~~~~i~~g~~~ 162 (166)
..++..+++.++|+|+.-|--+.|. +++++.|+.|+..
T Consensus 5 ~~~i~~~l~~~L~~A~~~gkl~~G~--~~v~Kai~~gka~ 42 (126)
T 2xzm_U 5 NQQLNEVLAKVIKSSNCQDAISKGL--HEVLRTIEAKQAL 42 (126)
T ss_dssp THHHHHHHHHHHTTTTSSSCEEESH--HHHHHHHHHTCCS
T ss_pred cccHHHHHHHHHHHHHHcCCEeecH--HHHHHHHHcCCce
Confidence 4578899999999999988877774 5899999988753
No 17
>2k87_A Non-structural protein 3 of replicase polyprotein; structural genomics, joint center for structural genomics, J protein structure initiative; NMR {Sars coronavirus}
Probab=26.35 E-value=56 Score=24.05 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=25.2
Q ss_pred hhHHHHHHHHhhcc-CCCceeEEEEEEe-cCceEEEEe
Q 031095 40 KKIGEDIAKETAKD-WKGLRVTVKLTVQ-NRQAKVAVV 75 (166)
Q Consensus 40 ~~fck~fN~~T~~~-~~g~~ipV~Itv~-drsf~~~v~ 75 (166)
.+||++||+++ .- .++ ..-+++|.+ |-+=++...
T Consensus 30 ~~ia~~~N~~l-gf~k~~-~~~lk~T~~P~~~GDVVl~ 65 (116)
T 2k87_A 30 TKFADDLNQMT-GFTKPA-SRELSVTFFPDLNGDVVAI 65 (116)
T ss_dssp HHHHHHHHHHT-TCCSSC-SEEEEEEETTCCCSSEEEE
T ss_pred HHHHHHHHHHh-CCCCCC-ceEEEEEECCCCCCCEEEe
Confidence 48999999999 54 445 667777887 777676543
No 18
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=25.77 E-value=40 Score=24.50 Aligned_cols=36 Identities=6% Similarity=0.040 Sum_probs=29.9
Q ss_pred eCChHHHHHHHhCCCCcCccCccCcceeeeecHHHHHHHHHHhc
Q 031095 75 VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKIMR 118 (166)
Q Consensus 75 ~Ppts~likka~g~~~~~~k~~~~~~~~G~it~~~v~eIAk~K~ 118 (166)
-+.+|..|.+.+|+.+..+ +|.||-+||..|-.+-.
T Consensus 25 G~~~A~~I~~~~gid~~~r--------~~~Lt~~ei~~l~~~i~ 60 (114)
T 3r8n_M 25 GKTRSKAILAAAGIAEDVK--------ISELSEGQIDTLRDEVA 60 (114)
T ss_dssp CHHHHHHHHHHTTCCTTCC--------STTCCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHcCcCcccC--------cccCCHHHHHHHHHHHH
Confidence 5678999999999887653 79999999999988763
No 19
>2vqe_J 30S ribosomal protein S10, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.58.15.1 PDB: 1gix_M* 1hnw_J* 1hnx_J* 1hnz_J* 1hr0_J 1ibk_J* 1ibl_J* 1ibm_J 1jgo_M* 1jgp_M* 1jgq_M* 1ml5_M* 1xmo_J* 1xmq_J* 1xnq_J* 1xnr_J* 1yl4_M 2b64_J* 2b9m_J* 2b9o_J* ...
Probab=23.69 E-value=15 Score=26.04 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=24.8
Q ss_pred cccCCCcChhhhhhhhhhcccceeeEecC
Q 031095 118 RPRSMAKELSGTVKEILGTCVSVGCTVDG 146 (166)
Q Consensus 118 ~~d~~~~~l~~~~k~VlGTa~SmGi~V~~ 146 (166)
....+...|+..|+.+..+|+.+|+.|.|
T Consensus 8 Lks~d~~~Ld~~~~~i~~~ak~~g~~v~g 36 (105)
T 2vqe_J 8 LRGFDHKTLDASAQKIVEAARRSGAQVSG 36 (105)
T ss_dssp EEESCSSTTTTTTTHHHHTTTSSSCCCCC
T ss_pred EEEcCHHHHHHHHHHHHHHHHHhCCcccC
Confidence 34456688999999999999999999876
No 20
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=21.36 E-value=6.8 Score=27.27 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=26.3
Q ss_pred HhcccCCCcChhhhhhhhhhcccceeeEecC
Q 031095 116 IMRPRSMAKELSGTVKEILGTCVSVGCTVDG 146 (166)
Q Consensus 116 ~K~~d~~~~~l~~~~k~VlGTa~SmGi~V~~ 146 (166)
+++...+...|+..|+.+.-+|+..|+.|.|
T Consensus 13 I~L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~G 43 (87)
T 3d3c_J 13 IRLKAFDHRLIDQATAEIVETAKRTGAQVRG 43 (87)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHHHHhCCccCC
Confidence 4455567788999999999999999999876
Done!