BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031096
         (166 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BCE|A Chain A, Cholesterol Esterase From Bos Taurus
          Length = 579

 Score = 26.2 bits (56), Expect = 9.8,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 8/125 (6%)

Query: 27  GAQSTARI--EELLQEDQNVKRRRDRYQKQSELLSKLTRQLSI--HDNRAAAASNWSDGG 82
           GAQ+T  +  E   Q+     R++     ++++L  +  ++++  H + A +A+ ++   
Sbjct: 359 GAQATYEVYTEPWAQDSSQETRKKTMVDLETDILFLIPTKIAVAQHKSHAKSANTYTYLF 418

Query: 83  GGAESSP----RTSAASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVR 138
                 P       A   DD +  F      P+  R+  R+ S      +++ A  GD  
Sbjct: 419 SQPSRMPIYPKWMGADHADDLQYVFGKPFATPLGYRAQDRTVSKAMIAYWTNFARTGDPN 478

Query: 139 SGSNS 143
           +G ++
Sbjct: 479 TGHST 483


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.307    0.121    0.331 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,479,809
Number of Sequences: 62578
Number of extensions: 161534
Number of successful extensions: 305
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 11
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.7 bits)