BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031096
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQ55|DRP2B_ARATH Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2
Length = 920
Score = 212 bits (539), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 118/164 (71%), Positives = 133/164 (81%), Gaps = 8/164 (4%)
Query: 4 EAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTR 63
+AVVLCQVEK+KEDMLNQLYSS+ A RIE L+QEDQNVKRRRDRYQKQS LLSKLTR
Sbjct: 761 KAVVLCQVEKSKEDMLNQLYSSISAIGNERIESLIQEDQNVKRRRDRYQKQSSLLSKLTR 820
Query: 64 QLSIHDNRAAAASNWSDGGGGAESSPRTSA-ASGDDWRSAFDAAANGPVSLRSYSRSASN 122
QLSIHDNRAAAAS+WSD G ESSPRT+ +SG+DW +AF+AAA+GP SL+ Y S
Sbjct: 821 QLSIHDNRAAAASSWSDNSG-TESSPRTNGGSSGEDWMNAFNAAASGPDSLKRY---GSG 876
Query: 123 GHSRRYSDPAENGDVRSGSNSGSRRT-PNRVPPPPPPTQSGSKY 165
GHSRRYSDPA+NG+ SGS SRRT PNR+PP PP QSGS Y
Sbjct: 877 GHSRRYSDPAQNGEDSSGSGGSSRRTTPNRLPPAPP--QSGSSY 918
>sp|Q9SE83|DRP2A_ARATH Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2
Length = 914
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/164 (70%), Positives = 130/164 (79%), Gaps = 5/164 (3%)
Query: 4 EAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTR 63
+AVVLCQVEKAKEDMLNQLYSS+ A RIE L+QEDQNVKRRR+RYQKQS LLSKLTR
Sbjct: 754 KAVVLCQVEKAKEDMLNQLYSSISAIGNERIESLIQEDQNVKRRRERYQKQSSLLSKLTR 813
Query: 64 QLSIHDNRAAAASNWSDGGGGAESSPRTS-AASGDDWRSAFDAAANGPVSLRSYSRSASN 122
QLSIHDNRAAAAS++SD G ESSPR S +SGDDW +AF++AANGP S S+ S
Sbjct: 814 QLSIHDNRAAAASSYSD-NSGTESSPRASGGSSGDDWMNAFNSAANGPSD--SLSKYGSG 870
Query: 123 GHSRRYSDPAENGDVRS-GSNSGSRRTPNRVPPPPPPTQSGSKY 165
GHSRRYSDPA+NGD S GS S R TPNR+PP PPPT S +Y
Sbjct: 871 GHSRRYSDPAQNGDAASPGSGSNRRTTPNRLPPAPPPTGSAYRY 914
>sp|Q39828|SDL5A_SOYBN Dynamin-related protein 5A OS=Glycine max PE=2 SV=1
Length = 610
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 4 EAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSEL 57
+++V CQV +AK +L+ ++ +G T R+ LL ED + RR K+ EL
Sbjct: 542 KSIVYCQVREAKRSLLDHFFTELGKMETKRLSSLLNEDPAIMERRSALAKRLEL 595
>sp|Q8LF21|DRP1C_ARATH Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1
SV=2
Length = 614
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 4 EAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSEL 57
+AVV CQV +AK +LN Y+ VG + ++ +L ED + RR K+ EL
Sbjct: 547 KAVVYCQVREAKRSLLNFFYAQVGRKEKEKLGAMLDEDPQLMERRGTLAKRLEL 600
>sp|Q84XF3|DRP1B_ARATH Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2
SV=1
Length = 610
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%)
Query: 4 EAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSEL 57
+++V CQV +AK +L+ ++ +G + +++ +LL ED V++RR K+ EL
Sbjct: 542 KSIVYCQVREAKRSLLDIFFTELGQKEMSKLSKLLDEDPAVQQRRTSIAKRLEL 595
>sp|Q39821|SDLCA_SOYBN Dynamin-related protein 12A OS=Glycine max PE=1 SV=1
Length = 610
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 4 EAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSEL 57
+++V CQV +AK +L+ ++ +G R+ LL ED + RR K+ EL
Sbjct: 542 KSIVYCQVREAKRSLLDHFFTELGKMEIKRLSSLLNEDPAIMERRSALAKRLEL 595
>sp|P42697|DRP1A_ARATH Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1
SV=3
Length = 610
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 4 EAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSEL 57
+++V CQV +AK +L+ ++ +G R+ LL ED + RR K+ EL
Sbjct: 542 KSIVYCQVREAKRSLLDHFFAELGTMDMKRLSSLLNEDPAIMERRSAISKRLEL 595
>sp|Q8S3C9|DRP1D_ARATH Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2
SV=2
Length = 612
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 4 EAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSK 60
+AVV CQV +AK +LN Y+ + R+ +LL E+ + RR + K+ EL K
Sbjct: 544 KAVVHCQVRQAKLSLLNYFYAQISQSQGKRLGQLLDENPALMERRMQCAKRLELYKK 600
>sp|Q9FNX5|DRP1E_ARATH Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1
SV=1
Length = 624
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 4 EAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSK 60
+A V CQV +AK +LN YS + + ++ +LL ED + RR K+ EL K
Sbjct: 556 KACVYCQVRQAKLALLNYFYSQISKREGKQLGQLLDEDPALMDRRLECAKRLELYKK 612
>sp|Q6P5D8|SMHD1_MOUSE Structural maintenance of chromosomes flexible hinge
domain-containing protein 1 OS=Mus musculus GN=Smchd1
PE=1 SV=2
Length = 2007
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 9 CQVEKAK---EDMLNQLYSS----VGAQSTARIEELLQE---DQNVKRRRDR-------Y 51
CQ E+AK + N+L + Q T IE LL++ +QN ++R R Y
Sbjct: 1657 CQAEEAKLKETQLRNELKAYNIDIPATQQTTHIEALLEKKITEQNELKKRPRRLCTLPNY 1716
Query: 52 QKQS-ELLSKLTRQLSIHDNRAAAASNW 78
K+S ++L K+ I D+RAA +W
Sbjct: 1717 TKRSGDILGKIAHLAQIEDDRAAMVISW 1744
>sp|P39812|GLTA_BACSU Glutamate synthase [NADPH] large chain OS=Bacillus subtilis (strain
168) GN=gltA PE=2 SV=3
Length = 1520
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 18 MLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNRAAAASN 77
L L++ G + ++EE+ + VKR + L + L+I NR SN
Sbjct: 835 FLRNLFAFDGNRKPLKLEEVESAESIVKRFKTGAMSFGSLSKEAHEALAIAMNRLGGKSN 894
Query: 78 WSDGGGGAESSPRTSAASGDDWRSAFDAAANGPVSLRSY 116
G GG + +GDD RSA A+G ++S+
Sbjct: 895 --SGEGGEDPKRFVPDENGDDRRSAIKQIASGRFGVKSH 931
>sp|P46677|TAF1_YEAST Transcription initiation factor TFIID subunit 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF1 PE=1 SV=1
Length = 1066
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 11/119 (9%)
Query: 21 QLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNRAAAASNWSD 80
Q Y + Q + +LL+ED + + +KQ +LL L R AA N
Sbjct: 942 QGYIKIKEQDKEDVNKLLEEDTSKINNLEELEKQKKLLQLELANLEKSQQRRAARQNSKR 1001
Query: 81 GGGGAESSPRTSAASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRS 139
GG + S +G D D A +R+ +RR + + G +R+
Sbjct: 1002 NGGATRT--ENSVDNGSDLAGVTDGKA---------ARNKGKNTTRRCATCGQIGHIRT 1049
>sp|P40357|SEC9_YEAST Protein transport protein SEC9 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC9 PE=1 SV=1
Length = 651
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 13 KAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSEL 57
K +E ++ + S +QST RIE + + N+ R+RYQ+++ L
Sbjct: 529 KIEEKLMREQTSQQLSQSTQRIEGAMNANNNISEVRERYQRKNVL 573
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.122 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,755,657
Number of Sequences: 539616
Number of extensions: 2545344
Number of successful extensions: 20695
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 309
Number of HSP's that attempted gapping in prelim test: 19814
Number of HSP's gapped (non-prelim): 973
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)