Query 031096
Match_columns 166
No_of_seqs 87 out of 101
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 09:09:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00302 GED Dynamin GTPase 99.8 4.4E-20 9.5E-25 134.2 7.8 64 1-66 27-90 (92)
2 PF02212 GED: Dynamin GTPase e 99.6 1.1E-15 2.4E-20 110.1 4.4 64 1-66 27-90 (92)
3 KOG0446 Vacuolar sorting prote 99.4 4.1E-13 9E-18 126.3 8.2 67 1-71 587-653 (657)
4 COG0699 Predicted GTPases (dyn 72.4 24 0.00053 30.8 8.0 60 2-63 483-542 (546)
5 COG3579 PepC Aminopeptidase C 71.4 8.2 0.00018 36.3 5.1 66 1-68 153-221 (444)
6 PF10863 DUF2702: Protein of u 68.9 9.6 0.00021 31.1 4.5 63 45-113 1-63 (143)
7 PF02344 Myc-LZ: Myc leucine z 67.9 8 0.00017 24.7 3.0 25 36-60 5-29 (32)
8 PF04999 FtsL: Cell division p 67.0 44 0.00094 23.9 7.2 51 20-71 38-88 (97)
9 COG4467 Regulator of replicati 56.4 26 0.00056 27.9 4.7 39 18-57 16-54 (114)
10 KOG3119 Basic region leucine z 54.2 49 0.0011 28.6 6.5 35 31-65 221-255 (269)
11 PF15369 KIAA1328: Uncharacter 53.9 51 0.0011 30.3 6.8 65 11-76 20-97 (328)
12 PF06156 DUF972: Protein of un 52.8 43 0.00093 25.6 5.3 49 10-60 9-57 (107)
13 cd01068 sensor_globin Globin d 51.3 76 0.0017 23.4 6.4 36 9-46 25-60 (147)
14 PF14591 AF0941-like: AF0941-l 46.6 53 0.0011 26.6 5.1 51 20-72 26-84 (127)
15 PRK13920 putative anti-sigmaE 46.6 21 0.00045 28.9 2.9 42 20-61 3-44 (206)
16 PF02153 PDH: Prephenate dehyd 46.0 1.8E+02 0.0038 24.3 8.4 63 2-64 171-246 (258)
17 PLN03184 chloroplast Hsp70; Pr 41.7 1.3E+02 0.0029 29.0 7.8 15 49-63 618-632 (673)
18 KOG1830 Wiskott Aldrich syndro 40.9 58 0.0013 31.4 5.3 55 9-64 28-82 (518)
19 smart00751 BSD domain in trans 40.8 41 0.00088 21.9 3.1 21 31-51 9-29 (51)
20 PF03914 CBF: CBF/Mak21 family 39.6 40 0.00087 26.2 3.4 20 9-28 10-29 (164)
21 PRK13169 DNA replication intia 38.9 78 0.0017 24.6 4.9 40 18-58 16-55 (110)
22 TIGR02209 ftsL_broad cell divi 38.4 1.3E+02 0.0028 20.6 7.3 51 19-70 26-76 (85)
23 PF14002 YniB: YniB-like prote 37.0 41 0.00089 28.2 3.3 25 5-29 95-119 (166)
24 PF06632 XRCC4: DNA double-str 36.3 1.4E+02 0.003 27.2 6.7 41 17-58 130-170 (342)
25 KOG4570 Uncharacterized conser 35.9 1.4E+02 0.0031 28.2 6.8 53 19-71 334-389 (418)
26 KOG4343 bZIP transcription fac 35.2 95 0.0021 30.9 5.8 46 15-60 284-337 (655)
27 PF07989 Microtub_assoc: Micro 35.0 1.4E+02 0.003 21.5 5.3 44 22-65 26-69 (75)
28 PF10400 Vir_act_alpha_C: Viru 34.9 77 0.0017 21.7 3.9 23 44-66 26-48 (90)
29 PF05130 FlgN: FlgN protein; 34.6 1.7E+02 0.0036 20.8 8.2 35 30-64 72-106 (143)
30 PF10205 KLRAQ: Predicted coil 33.8 2.3E+02 0.0049 22.0 6.7 46 22-71 31-76 (102)
31 PF02341 RcbX: RbcX protein; 33.4 1.1E+02 0.0025 23.9 5.0 20 28-47 51-70 (111)
32 PF09440 eIF3_N: eIF3 subunit 32.8 2E+02 0.0043 22.7 6.4 22 42-63 65-86 (133)
33 cd06931 NR_LBD_HNF4_like The l 32.2 2.5E+02 0.0054 22.5 7.0 46 10-55 156-204 (222)
34 PF07795 DUF1635: Protein of u 31.6 1.1E+02 0.0023 26.6 5.0 14 43-56 44-57 (214)
35 cd06943 NR_LBD_RXR_like The li 31.3 1.6E+02 0.0034 23.4 5.6 37 10-46 155-194 (207)
36 PF11563 Protoglobin: Protoglo 30.7 39 0.00085 25.1 2.0 39 9-49 27-65 (158)
37 PRK13729 conjugal transfer pil 30.1 2.1E+02 0.0045 27.6 7.1 53 10-66 65-117 (475)
38 PF00957 Synaptobrevin: Synapt 30.1 2E+02 0.0042 20.2 8.0 51 7-59 8-58 (89)
39 PRK10119 putative hydrolase; P 29.9 1.3E+02 0.0027 25.8 5.2 48 16-68 168-215 (231)
40 KOG0251 Clathrin assembly prot 29.5 2E+02 0.0043 27.5 6.9 53 10-65 197-249 (491)
41 smart00830 CM_2 Chorismate mut 27.4 1E+02 0.0022 20.7 3.5 37 43-80 13-51 (79)
42 PF01088 Peptidase_C12: Ubiqui 27.1 54 0.0012 27.3 2.4 47 5-51 95-147 (214)
43 PF08776 VASP_tetra: VASP tetr 27.0 1.6E+02 0.0034 19.6 4.1 29 12-40 6-34 (40)
44 PF04799 Fzo_mitofusin: fzo-li 27.0 3.8E+02 0.0082 22.5 7.7 52 7-60 114-165 (171)
45 PF09738 DUF2051: Double stran 26.7 4.4E+02 0.0096 23.6 8.2 58 4-65 107-166 (302)
46 PF10883 DUF2681: Protein of u 26.4 2.5E+02 0.0054 21.1 5.6 31 31-61 29-59 (87)
47 PRK14127 cell division protein 26.1 1.9E+02 0.0041 22.4 5.1 37 20-60 29-65 (109)
48 PF12464 Mac: Maltose acetyltr 25.6 1.2E+02 0.0026 19.3 3.4 23 40-62 13-35 (55)
49 cd00781 ketosteroid_isomerase 25.6 1E+02 0.0022 21.5 3.3 46 13-58 3-56 (122)
50 PF13060 DUF3921: Protein of u 24.9 98 0.0021 21.9 3.0 37 1-37 8-45 (58)
51 PF14098 SSPI: Small, acid-sol 24.7 35 0.00075 24.7 0.7 33 3-35 4-36 (65)
52 TIGR03697 NtcA_cyano global ni 24.1 2.6E+02 0.0056 21.0 5.5 50 27-76 71-121 (193)
53 COG4575 ElaB Uncharacterized c 23.6 3.6E+02 0.0079 21.1 6.2 45 20-65 11-60 (104)
54 COG4461 LprI Uncharacterized p 23.6 1.4E+02 0.003 25.6 4.2 67 2-70 33-103 (185)
55 PF13608 Potyvirid-P3: Protein 23.3 71 0.0015 29.8 2.7 50 20-71 3-89 (445)
56 PF04822 Takusan: Takusan; In 23.1 1.3E+02 0.0028 22.4 3.5 29 32-60 19-47 (84)
57 PF15058 Speriolin_N: Sperioli 22.1 1.1E+02 0.0023 26.6 3.3 14 58-71 41-54 (200)
58 cd07922 CarBa CarBa is the A s 21.4 1E+02 0.0022 22.7 2.7 25 19-45 6-30 (81)
59 PRK10947 global DNA-binding tr 21.1 3.9E+02 0.0085 21.3 6.1 16 50-65 53-68 (135)
60 PF03909 BSD: BSD domain ; I 21.0 97 0.0021 20.8 2.4 21 31-51 14-34 (62)
61 PF04108 APG17: Autophagy prot 20.8 5.1E+02 0.011 23.6 7.5 42 19-67 337-378 (412)
62 PF10397 ADSL_C: Adenylosuccin 20.7 2.2E+02 0.0047 19.9 4.2 41 5-45 8-52 (81)
63 TIGR03092 SASP_sspI small, aci 20.6 48 0.0011 24.0 0.8 35 3-37 3-37 (65)
64 PF11382 DUF3186: Protein of u 20.4 2.3E+02 0.0049 24.9 5.1 45 18-66 29-73 (308)
65 PF11594 Med28: Mediator compl 20.3 3.5E+02 0.0075 21.2 5.5 54 18-78 25-78 (106)
No 1
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.82 E-value=4.4e-20 Score=134.24 Aligned_cols=64 Identities=25% Similarity=0.420 Sum_probs=61.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031096 1 MSQEAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLS 66 (166)
Q Consensus 1 ~VPKAIV~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLs 66 (166)
+||||||||||+.+|+.||++||.+||+ ++.+++||.|||.++++|++|.+++++|++|..-|+
T Consensus 27 ~VPKaI~~~lv~~~~~~lq~~L~~~L~~--~~~~~~LL~E~~~i~~kR~~~~~~l~~L~~A~~~l~ 90 (92)
T smart00302 27 QVPKAIMYLLVNESKDSLQNELLALLYK--EELLDELLEEDPEIASKRKELKKRLELLKKARQIIA 90 (92)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhC--cccHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999 778999999999999999999999999999998774
No 2
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.59 E-value=1.1e-15 Score=110.13 Aligned_cols=64 Identities=31% Similarity=0.451 Sum_probs=58.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031096 1 MSQEAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLS 66 (166)
Q Consensus 1 ~VPKAIV~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLs 66 (166)
.|||+|+||+|+.+++.|+++|+.+||..+ .+++||.|||.++++|++|.++++.|++|.+-|+
T Consensus 27 ~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~--~~~~Ll~Ed~~i~~kR~~l~~~~~~L~~A~~~L~ 90 (92)
T PF02212_consen 27 SVPKAIMHFLVNKSKEQLQSELLNELYDEE--DLEELLQEDPEIAEKREELKKKLERLKKAQQILS 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCG--GCCCCT--GHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHhHHHHHHHHhccchH--HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999954 4999999999999999999999999999998774
No 3
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=99.42 E-value=4.1e-13 Score=126.35 Aligned_cols=67 Identities=31% Similarity=0.337 Sum_probs=60.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 031096 1 MSQEAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNR 71 (166)
Q Consensus 1 ~VPKAIV~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLsihdnR 71 (166)
.||||||||||+++|++||++|+.+||+. .++++.||+|||.+++||++|++||++|++|. +|+++.
T Consensus 587 ~vpk~i~~~lv~~~k~~l~~~l~~~L~~~-~~~~~~ll~E~~~i~~~R~~~~~~l~~L~~a~---~ii~~~ 653 (657)
T KOG0446|consen 587 TVPKALNHELLNEFKDDLPNELDQRLYAG-DEQLESLLKEDPRIKRRRELQQKRLLALQKAL---SILATV 653 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhHHHHHHccCHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 48999999999999999999999999994 99999999999999999999999988888875 455544
No 4
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=72.37 E-value=24 Score=30.85 Aligned_cols=60 Identities=18% Similarity=0.073 Sum_probs=53.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHh
Q 031096 2 SQEAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTR 63 (166)
Q Consensus 2 VPKAIV~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~ 63 (166)
+++++++..++..|+.........++. ....++|..+++.+.+.+..|.+.++.+..+..
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (546)
T COG0699 483 VLKAIFELLKNKRKRLAQKQRLKRLYL--EQLEDELLRTAEEILELRLLLEQFLEALKLAAR 542 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888888888 788899999999999999999999999988765
No 5
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=71.44 E-value=8.2 Score=36.28 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=54.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHH---HHHHHHHHHHHHHHHHHHHhhhhhh
Q 031096 1 MSQEAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQN---VKRRRDRYQKQSELLSKLTRQLSIH 68 (166)
Q Consensus 1 ~VPKAIV~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~---v~~RRe~c~K~LeLlkkAs~qLsih 68 (166)
.|||+||--.+--++..-||+++.++-++....|..+|.|--+ |...+|+..+ |+|+=+..-|++-
T Consensus 153 vVpK~~ypes~sSS~Sr~ln~~Ln~~LR~dAqiLR~a~~eg~~~~~v~~~kEe~l~--eif~~l~~~lg~P 221 (444)
T COG3579 153 VVPKSVYPESFSSSNSRELNALLNKLLRQDAQILRDALKEGADDDTVEALKEELLQ--EIFNFLAMTLGLP 221 (444)
T ss_pred CCchhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH--HHHHHHHHHcCCC
Confidence 5899999988999999999999999999888888899988554 7777777643 6777777777763
No 6
>PF10863 DUF2702: Protein of unknown function (DUF2702); InterPro: IPR022592 This entry represents fungal proteins with unknown function.
Probab=68.95 E-value=9.6 Score=31.13 Aligned_cols=63 Identities=29% Similarity=0.329 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCCCCCcCCCCCCCCcchhHHHHHHHhcCCCCc
Q 031096 45 KRRRDRYQKQSELLSKLTRQLSIHDNRAAAASNWSDGGGGAESSPRTSAASGDDWRSAFDAAANGPVSL 113 (166)
Q Consensus 45 ~~RRe~c~K~LeLlkkAs~qLsihdnRaa~as~~~~~~s~~~~~~~~~~~~g~dwr~af~~a~~~~~~~ 113 (166)
|.||+++++.++|--+ =||+|--|=+.|.+ |-..+.+.+.+..+.-..-++-+.+|- +.|+-.
T Consensus 1 MsRrkEIkeK~~LQAk--~Q~afS~nn~kvl~-WL~~~~~~~~~~~~~~~~~~~s~~~F~---~LPVI~ 63 (143)
T PF10863_consen 1 MSRRKEIKEKLALQAK--FQLAFSNNNSKVLS-WLKPSKSKTSSNSTSKTELNDSKDSFF---NLPVIQ 63 (143)
T ss_pred CchHHHHHHHHHHHHH--HHHHHhhhHHHHHH-hcCcCccCCCCCccccccCCccHHHhh---cCCccc
Confidence 5699999999999655 48888888777666 988775454432222123455566663 566544
No 7
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=67.87 E-value=8 Score=24.67 Aligned_cols=25 Identities=28% Similarity=0.608 Sum_probs=20.2
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHHH
Q 031096 36 ELLQEDQNVKRRRDRYQKQSELLSK 60 (166)
Q Consensus 36 eLL~ED~~v~~RRe~c~K~LeLlkk 60 (166)
.|+-|-+.+..||++++..|+-|+.
T Consensus 5 kL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788888999999999999988764
No 8
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=67.04 E-value=44 Score=23.88 Aligned_cols=51 Identities=14% Similarity=0.224 Sum_probs=38.9
Q ss_pred HHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 031096 20 NQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNR 71 (166)
Q Consensus 20 n~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLsihdnR 71 (166)
..++.++.+. +.+...|-.|...+.-.......--.+-+-|.++|+||.-.
T Consensus 38 ~~~~~~l~~l-~~~~~~l~~e~~~L~lE~~~l~~~~rIe~iA~~~LgM~~P~ 88 (97)
T PF04999_consen 38 RQLFYELQQL-EKEIDQLQEENERLRLEIATLSSPSRIERIAREKLGMVPPE 88 (97)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHcCCCCCCC
Confidence 3445555553 56778888888888888888888888888999999998654
No 9
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=56.41 E-value=26 Score=27.88 Aligned_cols=39 Identities=13% Similarity=0.319 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 031096 18 MLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSEL 57 (166)
Q Consensus 18 Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeL 57 (166)
=++.||.+|+.. ...|.+|+.|+.++.-.=+++.++|..
T Consensus 16 ~l~~l~~el~~l-K~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 16 QLGVLLAELGGL-KQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 468899999986 678999999999999888888888865
No 10
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=54.19 E-value=49 Score=28.60 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=31.9
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhh
Q 031096 31 TARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQL 65 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qL 65 (166)
..++.+|-.|++.+..+.+++++.|..|+.+..|+
T Consensus 221 ~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 221 AHRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44789999999999999999999999999998875
No 11
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=53.95 E-value=51 Score=30.27 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHH-------HHHHHHHHHHHH-Hhh-----hhhhhhhhhhhc
Q 031096 11 VEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRD-------RYQKQSELLSKL-TRQ-----LSIHDNRAAAAS 76 (166)
Q Consensus 11 V~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe-------~c~K~LeLlkkA-s~q-----LsihdnRaa~as 76 (166)
|.+-|+.+-.+|-.+-..- ++.|..|..++.-|++.|+ +|+..|.||.+- ++| +||-+..||-+-
T Consensus 20 ~~~~~e~~~~~~~~~~~~~-e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~lyq~ylseqq~kl~~s~~~l~~~~~~ 97 (328)
T PF15369_consen 20 VSEEKEVTEERLKAEQESF-EKKIRQLEEQNELIIKEREDLQQQYRECQELLSLYQKYLSEQQEKLTMSLSELSAARMK 97 (328)
T ss_pred hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhhhhhh
Confidence 4455555555554443332 4456677777777777765 799999999874 444 577777765443
No 12
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=52.77 E-value=43 Score=25.63 Aligned_cols=49 Identities=18% Similarity=0.413 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 031096 10 QVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSK 60 (166)
Q Consensus 10 qV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkk 60 (166)
+|..-... +..|+.+|... .+++.+||.|+..+.-.-+.+.++|.-+.+
T Consensus 9 ~l~~le~~-l~~l~~~~~~L-K~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQ-LGQLLEELEEL-KKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34433333 45677888775 668999999999999988888888877665
No 13
>cd01068 sensor_globin Globin domain present in Globin-Coupled-Sensors (GCS). These domains detect changes in intracellular concentrations of oxygen, carbon monoxyde, or nitrous oxide, which result in aerotaxis and/or gene regulation. One subgroup, the HemATs, are aerotactic heme sensors combining a globin with an MCP signaling domain, others function as gene regulators, by direct combination with DNA-binding domains, with domains modulating 2nd messengers, or with domains interacting with transcription factors or regulators.
Probab=51.27 E-value=76 Score=23.39 Aligned_cols=36 Identities=17% Similarity=0.421 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHH
Q 031096 9 CQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKR 46 (166)
Q Consensus 9 cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~ 46 (166)
-.|....+.|.++||..|.+ ...+..++..+..+.+
T Consensus 25 ~~~~~~~~~i~~~FY~~l~~--~p~~~~~~~~~~~~~~ 60 (147)
T cd01068 25 PVIEANADELVDRFYDHLRR--TPETAAFLGDESVVER 60 (147)
T ss_pred HHHHHHHHHHHHHHHHHHhc--ChHHHHHhCCchHHHH
Confidence 45778889999999999999 5678888876444443
No 14
>PF14591 AF0941-like: AF0941-like; PDB: 1YOZ_B.
Probab=46.65 E-value=53 Score=26.56 Aligned_cols=51 Identities=20% Similarity=0.332 Sum_probs=33.9
Q ss_pred HHHHHHHhhccHHHHHHHHhhCH-HHHH-------HHHHHHHHHHHHHHHHhhhhhhhhhh
Q 031096 20 NQLYSSVGAQSTARIEELLQEDQ-NVKR-------RRDRYQKQSELLSKLTRQLSIHDNRA 72 (166)
Q Consensus 20 n~Lys~Lykke~~~LeeLL~ED~-~v~~-------RRe~c~K~LeLlkkAs~qLsihdnRa 72 (166)
.+.+.+|.. .+.+.+|+.-|= .|+. -+++|++.+..|+--..||+.|=+|+
T Consensus 26 eei~~~L~~--~e~I~emFr~D~e~Il~~~~~Gdi~eEEA~~ll~eL~~~asqL~~~~~~~ 84 (127)
T PF14591_consen 26 EEIFESLAD--KEEIEEMFRSDLEDILEDYKSGDIDEEEALQLLDELKSYASQLQEHYFRV 84 (127)
T ss_dssp GGHHH-HT---HHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHcC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555654 666777765443 2222 47888888888888889999999984
No 15
>PRK13920 putative anti-sigmaE protein; Provisional
Probab=46.56 E-value=21 Score=28.93 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=33.0
Q ss_pred HHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Q 031096 20 NQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKL 61 (166)
Q Consensus 20 n~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkA 61 (166)
..+.-.|...|..+|+.+|.+|+...++=++.++.+..+...
T Consensus 3 ~YvlG~Ls~eE~~~ve~~L~~dp~~~~~v~~~e~~~~~l~~~ 44 (206)
T PRK13920 3 LYALGALSPEERARVEAALEAYPELWAELRALQEALAALAEG 44 (206)
T ss_pred hhhcCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHhc
Confidence 455566777888999999999999988888888877655544
No 16
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=46.03 E-value=1.8e+02 Score=24.30 Aligned_cols=63 Identities=8% Similarity=0.107 Sum_probs=44.9
Q ss_pred cchHHHHHHHHHHHHH------HHH------HHHHHHhhccHHHHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHhh
Q 031096 2 SQEAVVLCQVEKAKED------MLN------QLYSSVGAQSTARIEELLQEDQN-VKRRRDRYQKQSELLSKLTRQ 64 (166)
Q Consensus 2 VPKAIV~cqV~~AKe~------Lln------~Lys~Lykke~~~LeeLL~ED~~-v~~RRe~c~K~LeLlkkAs~q 64 (166)
+|=.+..++++...+. +++ +..+.|.+....+..+++.+++. +.+.++++.+.|+-++++.++
T Consensus 171 lpH~~a~al~~~~~~~~~~~~~~~~~a~~~frd~tRia~~~p~l~~~I~~~N~~~~~~~l~~~~~~L~~l~~~l~~ 246 (258)
T PF02153_consen 171 LPHLLASALANTLAELSSDDPDILRLAGGGFRDMTRIASSDPELWADIFLSNPENLLEALDEFIKELNELREALEA 246 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGTHHHHHHHGGGGS-HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHhhcchhHHhhcccccCChHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556777777733211 111 33446777778899999999997 999999999999998888764
No 17
>PLN03184 chloroplast Hsp70; Provisional
Probab=41.72 E-value=1.3e+02 Score=29.03 Aligned_cols=15 Identities=7% Similarity=0.149 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHh
Q 031096 49 DRYQKQSELLSKLTR 63 (166)
Q Consensus 49 e~c~K~LeLlkkAs~ 63 (166)
++..++.+.+++...
T Consensus 618 ~~~~~l~~~l~~l~~ 632 (673)
T PLN03184 618 DAMAALNQEVMQIGQ 632 (673)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 18
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=40.88 E-value=58 Score=31.44 Aligned_cols=55 Identities=22% Similarity=0.367 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhh
Q 031096 9 CQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQ 64 (166)
Q Consensus 9 cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~q 64 (166)
|--|-.-.+|..+| ++|+|..|+-|+||..|--++.-|=-.++.|++-|..-..|
T Consensus 28 cvtN~TLaniIRQL-sSLSKhAEdIFGELf~da~~f~~R~NSLQ~RIDRL~vkVtq 82 (518)
T KOG1830|consen 28 CVTNITLANIIRQL-SSLSKHAEDIFGELFNDANNFNHRANSLQERIDRLAVKVTQ 82 (518)
T ss_pred eecchHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhc
Confidence 44445555666665 78999999999999999888777766677666665544443
No 19
>smart00751 BSD domain in transcription factors and synapse-associated proteins.
Probab=40.84 E-value=41 Score=21.89 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=17.8
Q ss_pred HHHHHHHHhhCHHHHHHHHHH
Q 031096 31 TARIEELLQEDQNVKRRRDRY 51 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c 51 (166)
.++++.||.|+|.|.+-+.++
T Consensus 9 ~~~i~~il~~~p~l~~~~~~l 29 (51)
T smart00751 9 KEEIESLLKENPLLKKLYNEL 29 (51)
T ss_pred HHHHHHHHHHCHHHHHHHHHH
Confidence 567889999999999887764
No 20
>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis. Other proteins containing this domain stimulate transcription from the HSP70 promoter.
Probab=39.56 E-value=40 Score=26.19 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 031096 9 CQVEKAKEDMLNQLYSSVGA 28 (166)
Q Consensus 9 cqV~~AKe~Lln~Lys~Lyk 28 (166)
+|+-.......++||..||.
T Consensus 10 ~~l~~~~n~d~~~FY~~LY~ 29 (164)
T PF03914_consen 10 FQLLSGQNIDLDRFYRALYS 29 (164)
T ss_pred HHHHHcCCCcHHHHHHHHHH
Confidence 44444556778999999998
No 21
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.92 E-value=78 Score=24.55 Aligned_cols=40 Identities=28% Similarity=0.454 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 031096 18 MLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELL 58 (166)
Q Consensus 18 Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLl 58 (166)
=++.|+.+|... ..++.+|+.|+..+.-.=+.+.++|+-+
T Consensus 16 ~l~~l~~el~~L-K~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 16 NLGVLLKELGAL-KKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777787775 6688999999999988877777777754
No 22
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=38.39 E-value=1.3e+02 Score=20.62 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=39.2
Q ss_pred HHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 031096 19 LNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDN 70 (166)
Q Consensus 19 ln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLsihdn 70 (166)
..++..++... +.++++|=.|...+..+...+..---+-+.|.++|.+.-.
T Consensus 26 ~~~~~~~~~~~-~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar~~lgM~~p 76 (85)
T TIGR02209 26 TRQLNNELQKL-QLEIDKLQKEWRDLQLEVAELSRHERIEKIAKKQLGMKLP 76 (85)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCCC
Confidence 34666666664 6678888899999999988888877788888888887643
No 23
>PF14002 YniB: YniB-like protein
Probab=37.02 E-value=41 Score=28.24 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 031096 5 AVVLCQVEKAKEDMLNQLYSSVGAQ 29 (166)
Q Consensus 5 AIV~cqV~~AKe~Lln~Lys~Lykk 29 (166)
+=|.|||++-+|.+.++|.-+-.|-
T Consensus 95 ~rm~rqvk~ire~IEdqlIlE~akG 119 (166)
T PF14002_consen 95 ARMSRQVKFIREGIEDQLILEQAKG 119 (166)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 3489999999999999999888773
No 24
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=36.34 E-value=1.4e+02 Score=27.17 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 031096 17 DMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELL 58 (166)
Q Consensus 17 ~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLl 58 (166)
.|++.++..+... ......|..|.+.+.+...+|.++||-|
T Consensus 130 el~d~~l~~~~~l-~~~~~~L~~enerL~~e~~~~~~qlE~~ 170 (342)
T PF06632_consen 130 ELFDWCLDANSRL-QAENEHLQKENERLESEANKLLKQLEKF 170 (342)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 3344556666666666666666666533
No 25
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.93 E-value=1.4e+02 Score=28.24 Aligned_cols=53 Identities=30% Similarity=0.238 Sum_probs=43.9
Q ss_pred HHHHHHHHhhccHHHHHHHHh---hCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 031096 19 LNQLYSSVGAQSTARIEELLQ---EDQNVKRRRDRYQKQSELLSKLTRQLSIHDNR 71 (166)
Q Consensus 19 ln~Lys~Lykke~~~LeeLL~---ED~~v~~RRe~c~K~LeLlkkAs~qLsihdnR 71 (166)
|.-+|++++.--...++.|+. -.+-|.+|-..|++.|..+-.--.|++.-|||
T Consensus 334 l~A~~~kl~~ew~~~~eal~~rQl~~qlv~er~~ti~~el~~l~eq~~q~wff~nr 389 (418)
T KOG4570|consen 334 LKALHSKLQAEWKIESEALLSRQLTTQLVKERLSTIEAELIALYEQNLQQWFFDNR 389 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 445778888766777888887 45678888899999999999999999999999
No 26
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=35.18 E-value=95 Score=30.88 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhcc--------HHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 031096 15 KEDMLNQLYSSVGAQS--------TARIEELLQEDQNVKRRRDRYQKQSELLSK 60 (166)
Q Consensus 15 Ke~Lln~Lys~Lykke--------~~~LeeLL~ED~~v~~RRe~c~K~LeLlkk 60 (166)
.+.|-|+-++..+++- +..|.+||.|++.++.+-..++++|++|-.
T Consensus 284 QRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 284 QRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 4677788888877643 457899999999999999999999999854
No 27
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=35.05 E-value=1.4e+02 Score=21.49 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=35.3
Q ss_pred HHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhh
Q 031096 22 LYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQL 65 (166)
Q Consensus 22 Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qL 65 (166)
|-..|.+..++..++++.|+-.++...+.+++.|.-+++...++
T Consensus 26 Lee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 26 LEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566678899999999999999999999888888877765
No 28
>PF10400 Vir_act_alpha_C: Virulence activator alpha C-term; InterPro: IPR018309 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response []. This entry represents the C-terminal domain.; PDB: 1YG2_A.
Probab=34.92 E-value=77 Score=21.66 Aligned_cols=23 Identities=9% Similarity=0.315 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 031096 44 VKRRRDRYQKQSELLSKLTRQLS 66 (166)
Q Consensus 44 v~~RRe~c~K~LeLlkkAs~qLs 66 (166)
+.++++.|.++|+.|.....++-
T Consensus 26 l~~~~~~~~~~l~~~~~~~~~~~ 48 (90)
T PF10400_consen 26 LEERREQHEERLAEYEEIEQEIF 48 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999998776643
No 29
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=34.60 E-value=1.7e+02 Score=20.78 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=28.4
Q ss_pred cHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhh
Q 031096 30 STARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQ 64 (166)
Q Consensus 30 e~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~q 64 (166)
++..|.+++.+++.+...+.++.+.++-++...+.
T Consensus 72 ~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~n~~ 106 (143)
T PF05130_consen 72 EEATLSELIEEREELQALWRELRELLEELQELNER 106 (143)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888889999999999999888887776654
No 30
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=33.76 E-value=2.3e+02 Score=22.04 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=34.5
Q ss_pred HHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 031096 22 LYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNR 71 (166)
Q Consensus 22 Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLsihdnR 71 (166)
|=.+|-.+ +..|..+.+|.+-+--|-.++.|++++|..=. .++.+.
T Consensus 31 L~e~Lk~k-e~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El---~~~~~~ 76 (102)
T PF10205_consen 31 LKEQLKEK-EQALRKLEQENDSLTFRNQQLTKRVEVLQEEL---EESEQK 76 (102)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhcc
Confidence 33444443 56789999999999999999999999987544 455444
No 31
>PF02341 RcbX: RbcX protein; InterPro: IPR003435 The RbcX protein has been identified as having a possible chaperonin-like function []. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RubisCO in Anabaena sp. (strain CA / ATCC 33047). RbcX has been shown to possess a chaperonin-like function assisting correct folding of RubisCO in Escherichia coli expression studies and is needed for RubisCO to reach its maximal activity [].; PDB: 2PEM_B 2PEI_L 2PEK_A 2Z46_E 2Z44_A 2PEJ_F 2PEN_D 2PEQ_B 2Z45_A 3Q20_A ....
Probab=33.41 E-value=1.1e+02 Score=23.88 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=15.3
Q ss_pred hccHHHHHHHHhhCHHHHHH
Q 031096 28 AQSTARIEELLQEDQNVKRR 47 (166)
Q Consensus 28 kke~~~LeeLL~ED~~v~~R 47 (166)
+..++-|++|+.|+++++.|
T Consensus 51 ~DGd~fl~~L~~e~~~LA~R 70 (111)
T PF02341_consen 51 QDGDAFLEALMRENQELALR 70 (111)
T ss_dssp SSHHHHHHHHHCC-HHHHHH
T ss_pred ccHHHHHHHHHHHCHHHHHH
Confidence 34577899999999998766
No 32
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=32.76 E-value=2e+02 Score=22.72 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 031096 42 QNVKRRRDRYQKQSELLSKLTR 63 (166)
Q Consensus 42 ~~v~~RRe~c~K~LeLlkkAs~ 63 (166)
..+.+||+++.++|+-|+..+.
T Consensus 65 ~e~~~kr~~Vl~~l~~l~~~~~ 86 (133)
T PF09440_consen 65 AELAEKREEVLAELKELEEETE 86 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888876554
No 33
>cd06931 NR_LBD_HNF4_like The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes. The ligand binding domain of hepatocyte nuclear factor 4 (HNF4) like proteins: HNF4 is a member of the nuclear receptor superfamily. HNF4 plays a key role in establishing and maintenance of hepatocyte differentiation in the liver. It is also expressed in gut, kidney, and pancreatic beta cells. HNF4 was originally classified as an orphan receptor, but later it is found that HNF4 binds with very high affinity to a variety of fatty acids. However, unlike other nuclear receptors, the ligands do not act as a molecular switch for HNF4. They seem to constantly bind to the receptor, which is constitutively active as a transcription activator. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, HNF4 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal lig
Probab=32.22 E-value=2.5e+02 Score=22.52 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHH---hhccHHHHHHHHhhCHHHHHHHHHHHHHH
Q 031096 10 QVEKAKEDMLNQLYSSV---GAQSTARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 10 qV~~AKe~Lln~Lys~L---ykke~~~LeeLL~ED~~v~~RRe~c~K~L 55 (166)
.|...++.+++.|..-+ +.....+|.+||.=-+.|..--.++...+
T Consensus 156 ~i~~~r~~~~~aL~~y~~~~~~~~~~Rf~~LL~~l~~lr~~~~~~~e~l 204 (222)
T cd06931 156 KIKRLRFQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQI 204 (222)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555533 22334566666665555554444443333
No 34
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=31.63 E-value=1.1e+02 Score=26.60 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 031096 43 NVKRRRDRYQKQSE 56 (166)
Q Consensus 43 ~v~~RRe~c~K~Le 56 (166)
.+.++|++.+.++.
T Consensus 44 ~a~~ERDEAr~qlq 57 (214)
T PF07795_consen 44 KAYQERDEAREQLQ 57 (214)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555544444
No 35
>cd06943 NR_LBD_RXR_like The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily. The ligand binding domain of the retinoid X receptor (RXR) and Ultraspiracle (USP): This family includes two evolutionary related nuclear receptors: retinoid X receptor (RXR) and Ultraspiracle (USP). RXR is a nuclear receptor in mammalian and USP is its counterpart in invertebrates. The native ligand of retinoid X receptor is 9-cis retinoic acid (RA). RXR functions as a DNA binding partner by forming heterodimers with other nuclear receptors including CAR, FXR, LXR, PPAR, PXR, RAR, TR, and VDR. RXRs can play different roles in these heterodimers. It acts either as a structural component of the heterodimer complex, required for DNA binding but not acting as a receptor or as both a structural and a functional component of the heterodimer, allowing 9-cis RA to signal through the corresponding heterodimer. In addition, RXR can also form homodimers, func
Probab=31.27 E-value=1.6e+02 Score=23.38 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHH---hhccHHHHHHHHhhCHHHHH
Q 031096 10 QVEKAKEDMLNQLYSSV---GAQSTARIEELLQEDQNVKR 46 (166)
Q Consensus 10 qV~~AKe~Lln~Lys~L---ykke~~~LeeLL~ED~~v~~ 46 (166)
+|++.++.+++-|+.-+ +..+..+|.+||.==+.+..
T Consensus 155 ~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LLl~L~~lr~ 194 (207)
T cd06943 155 EVESLREKVYASLEEYCRQKHPEQPGRFAKLLLRLPALRS 194 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHh
Confidence 45666666666665544 33344566666665555444
No 36
>PF11563 Protoglobin: Protoglobin; PDB: 2VEE_G 3QZZ_A 3R0G_A 3QZX_A 2VEB_A 1OR6_A 1OR4_B 2W31_B.
Probab=30.68 E-value=39 Score=25.09 Aligned_cols=39 Identities=8% Similarity=0.285 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHH
Q 031096 9 CQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRD 49 (166)
Q Consensus 9 cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe 49 (166)
-.+....+.|.+.||..|.+ .+.+.+.+..+..+.+.+.
T Consensus 27 ~~~~~~~~~iv~~FY~~l~~--~pe~~~~~~~~~~~~~lk~ 65 (158)
T PF11563_consen 27 PIIEPHAPEIVDDFYDHLLR--FPETARIFDSESTIERLKA 65 (158)
T ss_dssp HHHHCTHHHHHHHHHHHHHT--SHHHHGGGCCHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHC--CHHHHHHhCChHHHHHHHH
Confidence 34566778999999999999 6788999988444443333
No 37
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.14 E-value=2.1e+02 Score=27.58 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031096 10 QVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLS 66 (166)
Q Consensus 10 qV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLs 66 (166)
+|+.++-.-+..-.++|-+ +|+.|-.|-+.+.+.++..+.+|+.|..-.++|.
T Consensus 65 kVnqSALteqQ~kasELEK----qLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk 117 (475)
T PRK13729 65 KVRQHATTEMQVTAAQMQK----QYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALA 117 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 4788887777777777754 8999988888888888888888887776665554
No 38
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=30.12 E-value=2e+02 Score=20.16 Aligned_cols=51 Identities=20% Similarity=0.312 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 031096 7 VLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLS 59 (166)
Q Consensus 7 V~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlk 59 (166)
+..+|++.|+-|.+.+-.-|.+ ++.|++|-+..+.+.+.=+..++...-++
T Consensus 8 i~~~v~~v~~im~~Ni~~ll~R--ge~L~~L~~kt~~L~~~a~~F~k~a~~l~ 58 (89)
T PF00957_consen 8 IQEQVEEVKNIMRENIDKLLER--GEKLEELEDKTEELSDNAKQFKKNAKKLK 58 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc--CchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5678999999999888777777 88899888877766655554444443333
No 39
>PRK10119 putative hydrolase; Provisional
Probab=29.94 E-value=1.3e+02 Score=25.80 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 031096 16 EDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIH 68 (166)
Q Consensus 16 e~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLsih 68 (166)
+..+||||++|-+ |.++|+-+..=.--.++-+-|.+.|..........
T Consensus 168 ~~~i~HF~eKLl~-----L~~~m~T~~gr~lA~~R~~~m~~Fl~~~~~E~~g~ 215 (231)
T PRK10119 168 QYALDHFQTKLLK-----LPQTMQTERGKQLAQHNADFLVEFMAKLSAELKGE 215 (231)
T ss_pred hhHHHHHHHHHHh-----hHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 4689999999998 88898877765444455556666776666665553
No 40
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.45 E-value=2e+02 Score=27.54 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhh
Q 031096 10 QVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQL 65 (166)
Q Consensus 10 qV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qL 65 (166)
+|..|-.-|..+++ +||..=.+-|..||+- ..--.+..|.+-|++|+++..|.
T Consensus 197 lI~~A~~lvvkdsf-~ly~~i~~gi~~Llek--ffem~~~~a~~al~iykr~~~q~ 249 (491)
T KOG0251|consen 197 LIIEAFELVVKDSF-KLYAAINDGIINLLEK--FFEMSKHDAIKALDIYKRFLSQT 249 (491)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--HhhcchHHHHHHHHHHHHHHHHH
Confidence 34444444554444 3444345567777754 34445889999999999998863
No 41
>smart00830 CM_2 Chorismate mutase type II. Chorismate mutase, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine PUBMED:9642265, PUBMED:9497350.
Probab=27.40 E-value=1e+02 Score=20.74 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhh-h-hhhhccccC
Q 031096 43 NVKRRRDRYQKQSELLSKLTRQLSIHDN-R-AAAASNWSD 80 (166)
Q Consensus 43 ~v~~RRe~c~K~LeLlkkAs~qLsihdn-R-aa~as~~~~ 80 (166)
.+..+|-.+.+.+..||+. ..++|.|- | ..+...|..
T Consensus 13 ~Ll~~R~~l~~~i~~~K~~-~~~~i~d~~Re~~vl~~~~~ 51 (79)
T smart00830 13 ALLAERAALAREVARLKAK-NGLPIYDPEREAEVLERLRA 51 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCCCCChHHHHHHHHHHHH
Confidence 3678999999999999999 45677764 3 444443443
No 42
>PF01088 Peptidase_C12: Ubiquitin carboxyl-terminal hydrolase, family 1; InterPro: IPR001578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C12 (ubiquitin C-terminal hydrolase family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. The type example is the human ubiquitin C-terminal hydrolase UCH-L1. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa and 100-200 kDa, IPR001394 from INTERPRO) []: this family are the 20-30 kDa ppeptides which includes the yeast yuh1. Yeast yuh1 protease is known to be active only against small ubiquitin conjugates, being inactive against conjugated beta-galactosidase []. A mammalian homologue, UCH (ubiquitin conjugate hydrolase), is one of the most abundant proteins in the brain []. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process, 0005622 intracellular; PDB: 1CMX_A 4DM9_A 2ETL_A 3IRT_A 3KW5_A 3IFW_A 2LEN_A 3KVF_A 2WDT_C 2WE6_B ....
Probab=27.07 E-value=54 Score=27.31 Aligned_cols=47 Identities=11% Similarity=0.249 Sum_probs=35.9
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHH
Q 031096 5 AVVLCQVEKA------KEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRY 51 (166)
Q Consensus 5 AIV~cqV~~A------Ke~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c 51 (166)
||+|++.|-. ..++|..|+.+--....+.-..+|.+++.+.+-...+
T Consensus 95 AlLh~l~N~~~~~~i~~gs~L~~f~~~t~~~~p~~Rg~~l~~~~~l~~aH~s~ 147 (214)
T PF01088_consen 95 ALLHALLNNPDRIEIEPGSILDQFKEFTKDLSPEERGKALENSKELRKAHNSF 147 (214)
T ss_dssp HHHHHHHTCCCTTCBBTTSHHHHHHHHHTTSTHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccCCchHHHHHHHHhcCCHHHHHHHHhCcHHHHHHHHHH
Confidence 8899999842 3568999998888888888888888887776544433
No 43
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=27.03 E-value=1.6e+02 Score=19.64 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHhh
Q 031096 12 EKAKEDMLNQLYSSVGAQSTARIEELLQE 40 (166)
Q Consensus 12 ~~AKe~Lln~Lys~Lykke~~~LeeLL~E 40 (166)
..-|..||.++..+|-|.-++-|+.+.+|
T Consensus 6 e~~KqEIL~EvrkEl~K~K~EIIeA~~~e 34 (40)
T PF08776_consen 6 ERLKQEILEEVRKELQKVKEEIIEAIRQE 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888656666655444
No 44
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=26.97 E-value=3.8e+02 Score=22.49 Aligned_cols=52 Identities=13% Similarity=0.347 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 031096 7 VLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSK 60 (166)
Q Consensus 7 V~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkk 60 (166)
.|+||..++.+|-.++=. |-+ +-+.|+++...--.+..+=..+...|+.+++
T Consensus 114 L~~~Vd~~~~eL~~eI~~-L~~-~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 114 LCQQVDQTKNELEDEIKQ-LEK-EIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666554422 221 1344555555555555555555555555543
No 45
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=26.66 E-value=4.4e+02 Score=23.63 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHH--HHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhh
Q 031096 4 EAVVLCQVEKAKEDM--LNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQL 65 (166)
Q Consensus 4 KAIV~cqV~~AKe~L--ln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qL 65 (166)
|..++.||.--|+.| +.+.|.++.+ .+.+...|-+-.++-...+...+..|+...+|.
T Consensus 107 k~~l~yqvd~Lkd~lee~eE~~~~~~r----e~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 107 KSALMYQVDLLKDKLEELEETLAQLQR----EYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999888877 4466677766 456666666777777777777777777766654
No 46
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=26.41 E-value=2.5e+02 Score=21.11 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=24.9
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Q 031096 31 TARIEELLQEDQNVKRRRDRYQKQSELLSKL 61 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkA 61 (166)
.++++.|+.|.+.++..-...+++++=|+--
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vr 59 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAETQVKNAKVR 59 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3348899999999999988888888777643
No 47
>PRK14127 cell division protein GpsB; Provisional
Probab=26.10 E-value=1.9e+02 Score=22.44 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=20.6
Q ss_pred HHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 031096 20 NQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSK 60 (166)
Q Consensus 20 n~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkk 60 (166)
+.|+.+|.. .++.|..|...+.++-..+++.|+-|+.
T Consensus 29 D~FLd~V~~----dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 29 DKFLDDVIK----DYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554 4566666666666555555555555544
No 48
>PF12464 Mac: Maltose acetyltransferase ; InterPro: IPR024688 Maltose acetyltransferase uses acetyl-CoA as acetyl donor to acetylate cytoplasmic maltose [], while galactoside acetyltransferase act on galactosides. ; GO: 0016407 acetyltransferase activity; PDB: 3V4E_A 4EGG_E 4DCL_A 3FTT_A 1KRR_B 1KRU_A 1KRV_C 1KQA_A 3NZ2_J 3ECT_A ....
Probab=25.57 E-value=1.2e+02 Score=19.32 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.3
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHH
Q 031096 40 EDQNVKRRRDRYQKQSELLSKLT 62 (166)
Q Consensus 40 ED~~v~~RRe~c~K~LeLlkkAs 62 (166)
-||.+.+.|.+|.+.+--|+...
T Consensus 13 ~d~el~~~r~~a~~l~~~~N~~~ 35 (55)
T PF12464_consen 13 SDPELQEIRARAKRLLQRYNQTP 35 (55)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHSH
T ss_pred CChHHHHHHHHHHHHHHHHHcCC
Confidence 48999999999999999998654
No 49
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=25.57 E-value=1e+02 Score=21.51 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhhCHHH--------HHHHHHHHHHHHHH
Q 031096 13 KAKEDMLNQLYSSVGAQSTARIEELLQEDQNV--------KRRRDRYQKQSELL 58 (166)
Q Consensus 13 ~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v--------~~RRe~c~K~LeLl 58 (166)
+.-+.++++|+..+-+...+.|.+|+.||-.+ ..-|+.+.+.++-+
T Consensus 3 ~~~~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~ 56 (122)
T cd00781 3 QEMKAAVQRYVEAVNAGDPEGIVALFADDATVEDPVGSPPRSGRAAIAAFYAQS 56 (122)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHH
Confidence 34566788889989888888999999887543 23355555544443
No 50
>PF13060 DUF3921: Protein of unknown function (DUF3921)
Probab=24.89 E-value=98 Score=21.86 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=17.2
Q ss_pred CcchHHHHHHHHHHHH-HHHHHHHHHHhhccHHHHHHH
Q 031096 1 MSQEAVVLCQVEKAKE-DMLNQLYSSVGAQSTARIEEL 37 (166)
Q Consensus 1 ~VPKAIV~cqV~~AKe-~Lln~Lys~Lykke~~~LeeL 37 (166)
||.|||-+.--+--|+ +++--...+|++-.++-|..|
T Consensus 8 miqkaih~tydelgkei~~~g~~~d~i~kaqeeylsal 45 (58)
T PF13060_consen 8 MIQKAIHRTYDELGKEIDLQGVIADEIQKAQEEYLSAL 45 (58)
T ss_pred HHHHHHHHhHHHHhHHhhhcchHHHHHHHHHHHHHHHh
Confidence 3455655554444443 333444445555444444444
No 51
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=24.66 E-value=35 Score=24.66 Aligned_cols=33 Identities=9% Similarity=0.234 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q 031096 3 QEAVVLCQVEKAKEDMLNQLYSSVGAQSTARIE 35 (166)
Q Consensus 3 PKAIV~cqV~~AKe~Lln~Lys~Lykke~~~Le 35 (166)
=+||++.+=+.+++.|.......|.+.||+.|-
T Consensus 4 R~AI~~nv~g~s~~el~~~I~daI~sgEE~~LP 36 (65)
T PF14098_consen 4 RQAIIHNVKGSSKEELKDTIEDAIQSGEEKALP 36 (65)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHhccchhcCC
Confidence 379999999999999999999999988887654
No 52
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=24.06 E-value=2.6e+02 Score=20.97 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=32.0
Q ss_pred hhccHHHHHHHHhhCHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q 031096 27 GAQSTARIEELLQEDQNVKRR-RDRYQKQSELLSKLTRQLSIHDNRAAAAS 76 (166)
Q Consensus 27 ykke~~~LeeLL~ED~~v~~R-Re~c~K~LeLlkkAs~qLsihdnRaa~as 76 (166)
+.-..+.|.+|+.++|.++.. -+.+.+++.........|..++.+.-+|.
T Consensus 71 ~~i~~~~~~~l~~~~p~l~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rla~ 121 (193)
T TIGR03697 71 LAVPIEQVEKAIEEDPDLSMLLLQGLSSRILQTEMMIETLAHRDMGSRLVS 121 (193)
T ss_pred EEeeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 333457889999999988775 23344555555556666777777644443
No 53
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=23.64 E-value=3.6e+02 Score=21.10 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=25.4
Q ss_pred HHHHHHHhhccHHHHHHHHhhC-----HHHHHHHHHHHHHHHHHHHHHhhh
Q 031096 20 NQLYSSVGAQSTARIEELLQED-----QNVKRRRDRYQKQSELLSKLTRQL 65 (166)
Q Consensus 20 n~Lys~Lykke~~~LeeLL~ED-----~~v~~RRe~c~K~LeLlkkAs~qL 65 (166)
.+|+++|-.. -+.+++||++. +...+-|.++...|+=.+.....+
T Consensus 11 ~~l~~el~~L-~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~ 60 (104)
T COG4575 11 DQLLAELQEL-LDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDT 60 (104)
T ss_pred HHHHHHHHHH-HHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444332 34688999874 556667777776655444444433
No 54
>COG4461 LprI Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown]
Probab=23.60 E-value=1.4e+02 Score=25.63 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=51.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHH----HHHHHHHHHhhhhhhhh
Q 031096 2 SQEAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQK----QSELLSKLTRQLSIHDN 70 (166)
Q Consensus 2 VPKAIV~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K----~LeLlkkAs~qLsihdn 70 (166)
|-|||-+--+...+|..++.-|.++-. ...=+.|=+|-......|..|.. ..+.|.....||++-|-
T Consensus 33 vEkaICan~~L~~lD~~~~t~Y~ql~a--~~~~~~lr~~qq~Wlk~r~~C~sDtdcl~~AY~~ri~qL~~a~~ 103 (185)
T COG4461 33 VEKAICANRQLNDLDVTLSTAYQQLFA--MGRRGALRDAQQSWLKLRNACASDTDCLQRAYEQRLAQLSKADP 103 (185)
T ss_pred hHHHhcCChhhhhHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhcccc
Confidence 457888888888999999999977766 44456666777788888888876 44578888889987664
No 55
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=23.34 E-value=71 Score=29.76 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=36.2
Q ss_pred HHHHHHHhhccHHHHHHHHhhCHHHHH---------------------------H----------HHHHHHHHHHHHHHH
Q 031096 20 NQLYSSVGAQSTARIEELLQEDQNVKR---------------------------R----------RDRYQKQSELLSKLT 62 (166)
Q Consensus 20 n~Lys~Lykke~~~LeeLL~ED~~v~~---------------------------R----------Re~c~K~LeLlkkAs 62 (166)
..|...||+ ++.+.+||.|||.+.- | =+.+.+.+++-+-+.
T Consensus 3 ~~LIk~Iyr--Pk~m~~lL~eePyll~lal~SP~VL~amynsgsle~a~~~wi~~d~~va~i~~~L~~LA~KVS~a~~L~ 80 (445)
T PF13608_consen 3 KALIKSIYR--PKLMRQLLEEEPYLLLLALLSPSVLIAMYNSGSLERAIQYWINRDQSVAKIFAILESLAKKVSRADTLV 80 (445)
T ss_pred HHHHHHcCC--HHHHHHHHHhCcHHHHHHHcCHHHHHHHHhCchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999 9999999999987631 1 244556666666677
Q ss_pred hhhhhhhhh
Q 031096 63 RQLSIHDNR 71 (166)
Q Consensus 63 ~qLsihdnR 71 (166)
+||.|-++=
T Consensus 81 ~Q~~iI~~~ 89 (445)
T PF13608_consen 81 EQLQIIEES 89 (445)
T ss_pred HHHHHHHHH
Confidence 787777665
No 56
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=23.09 E-value=1.3e+02 Score=22.39 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=25.9
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 031096 32 ARIEELLQEDQNVKRRRDRYQKQSELLSK 60 (166)
Q Consensus 32 ~~LeeLL~ED~~v~~RRe~c~K~LeLlkk 60 (166)
+.+++|..|=+-+-+.|.++.++|.+|..
T Consensus 19 k~lE~L~~eL~~it~ERnELr~~L~~~~~ 47 (84)
T PF04822_consen 19 KELERLKFELQKITKERNELRDILALYTE 47 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999998753
No 57
>PF15058 Speriolin_N: Speriolin N terminus
Probab=22.07 E-value=1.1e+02 Score=26.57 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=7.4
Q ss_pred HHHHHhhhhhhhhh
Q 031096 58 LSKLTRQLSIHDNR 71 (166)
Q Consensus 58 lkkAs~qLsihdnR 71 (166)
|..+..--+-|++|
T Consensus 41 L~ea~~~~~~r~~~ 54 (200)
T PF15058_consen 41 LGEACAEPSQRQGN 54 (200)
T ss_pred HHHhhcccccccCC
Confidence 44455545556655
No 58
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=21.43 E-value=1e+02 Score=22.71 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=18.4
Q ss_pred HHHHHHHHhhccHHHHHHHHhhCHHHH
Q 031096 19 LNQLYSSVGAQSTARIEELLQEDQNVK 45 (166)
Q Consensus 19 ln~Lys~Lykke~~~LeeLL~ED~~v~ 45 (166)
+|+|+.+|.+ ...+.+...+||.-.
T Consensus 6 ~nrli~~L~~--dp~~rerF~~DPea~ 30 (81)
T cd07922 6 VNRLIQELFK--DPGLIERFQDDPSAV 30 (81)
T ss_pred HHHHHHHHhc--CHHHHHHHHHCHHHH
Confidence 4899999998 666666777776543
No 59
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=21.08 E-value=3.9e+02 Score=21.29 Aligned_cols=16 Identities=0% Similarity=-0.066 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhhh
Q 031096 50 RYQKQSELLSKLTRQL 65 (166)
Q Consensus 50 ~c~K~LeLlkkAs~qL 65 (166)
+....|+-|+....+.
T Consensus 53 er~~kl~~~r~~m~~~ 68 (135)
T PRK10947 53 ERTRKLQQYREMLIAD 68 (135)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3333444444444443
No 60
>PF03909 BSD: BSD domain ; InterPro: IPR005607 The BSD domain is an about 60-residue long domain named after the BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins in which it is found. Additionally, it is also found in several hypothetical proteins. The BSD domain occurs in one or two copies in a variety of species ranging from primal protozoan to human. It can be found associated with other domains such as the BTB domain (see PDOC50097 from PROSITEDOC) or the U-box in multidomain proteins. The function of the BSD domain is yet unknown []. Secondary structure prediction indicates the presence of three predicted alpha helices, which probably form a three-helical bundle in small domains. The third predicted helix contains neighbouring phenylalanine and tryptophan residues - less common amino acids that are invariant in all the BSD domains identified and that are the most striking sequence features of the domain []. Some proteins known to contain one or two BSD domains are listed below: Mammalian TFIIH basal transcription factor complex p62 subunit (GTF2H1). Yeast RNA polymerase II transcription factor B 73 kDa subunit (TFB1), the homologue of BTF2. Yeast DOS2 protein. It is involved in single-copy DNA replication and ubiquitination. Drosophila synapse-associated protein SAP47. Mammalian SYAP1. Various Arabidopsis thaliana (Mouse-ear cress) hypothetical proteins.; PDB: 1X3A_A 1PFJ_A 2RNR_B 2DII_A.
Probab=21.03 E-value=97 Score=20.77 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=16.3
Q ss_pred HHHHHHHHhhCHHHHHHHHHH
Q 031096 31 TARIEELLQEDQNVKRRRDRY 51 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c 51 (166)
.+.+..||.+||.|.+-+.++
T Consensus 14 ~e~i~~lL~~~p~l~~~~~~l 34 (62)
T PF03909_consen 14 TEEIKKLLEEDPNLRKLYNEL 34 (62)
T ss_dssp HHHHHHHHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHhCHHHHHHHHHh
Confidence 567899999999998877664
No 61
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=20.82 E-value=5.1e+02 Score=23.62 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=28.8
Q ss_pred HHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 031096 19 LNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSI 67 (166)
Q Consensus 19 ln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLsi 67 (166)
|..||...-. -...||.| |.+||.-..++-.+.+.+.++|..
T Consensus 337 L~~~Y~~F~~----aY~~LL~E---v~RRr~~~~k~~~i~~~~~eeL~~ 378 (412)
T PF04108_consen 337 LCEFYEGFLS----AYDSLLLE---VERRRAVRDKMKKIIREANEELDK 378 (412)
T ss_pred HHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554332 44567775 788888888888888888888753
No 62
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []. This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
Probab=20.67 E-value=2.2e+02 Score=19.88 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=23.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhc---cHHHHHHHHhhCHHHH
Q 031096 5 AVVLCQVEK-AKEDMLNQLYSSVGAQ---STARIEELLQEDQNVK 45 (166)
Q Consensus 5 AIV~cqV~~-AKe~Lln~Lys~Lykk---e~~~LeeLL~ED~~v~ 45 (166)
+||..++.+ .-+.=--+++.++..+ ++.-|.+.|.+|+.|.
T Consensus 8 ~v~~~L~~~G~gR~~Ah~lv~~~a~~a~~~~~~l~e~l~~d~~i~ 52 (81)
T PF10397_consen 8 RVMLALAEKGLGRQEAHELVQEAAMEAWENGRDLREVLLADPEIA 52 (81)
T ss_dssp HHHHHHHHTTH-HHHHHHHHHHHHHHHHHTTS-HHHHHCTTHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHH
Confidence 578888876 2222223333333321 2456888888999887
No 63
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=20.62 E-value=48 Score=24.02 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Q 031096 3 QEAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEEL 37 (166)
Q Consensus 3 PKAIV~cqV~~AKe~Lln~Lys~Lykke~~~LeeL 37 (166)
=+|||+..-+..|+.|-......|-+.|++.|--|
T Consensus 3 R~Ai~~nv~~~s~~elk~~I~daI~sgEEk~LPGL 37 (65)
T TIGR03092 3 RRAILANISNNTKEQLEATIVDAIQSGEEKMLPGL 37 (65)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhccchhcCCcc
Confidence 37999999999999999999999988888766443
No 64
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=20.38 E-value=2.3e+02 Score=24.90 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031096 18 MLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLS 66 (166)
Q Consensus 18 Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLs 66 (166)
++..+...|- +++++|=.|.+.+.+++++..++++.++...+++.
T Consensus 29 l~~~l~~~l~----~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~ 73 (308)
T PF11382_consen 29 LQPNLIDSLE----DQFDSLREENDELRAELDALQAQLNAADQFIAAVA 73 (308)
T ss_pred hchhhhhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 48889999999999999999999988888877764
No 65
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=20.34 E-value=3.5e+02 Score=21.22 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q 031096 18 MLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNRAAAASNW 78 (166)
Q Consensus 18 Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLsihdnRaa~as~~ 78 (166)
|+.+|+=++++ ++.+|+||-+ +-+++|++.=+|++|...-++.|.+=-+-+..+
T Consensus 25 lqKr~~LS~~k-----pe~~lkEEi~--eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~~ 78 (106)
T PF11594_consen 25 LQKRFELSAYK-----PEQVLKEEIN--ELKEELQRKEQLLQKHYEKIDYWEKLLSDAQNQ 78 (106)
T ss_pred HHHHHHHHhcC-----HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566667776 6777777643 444889999999999999999998874444433
Done!