Query 031096
Match_columns 166
No_of_seqs 87 out of 101
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 14:26:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3szr_A Interferon-induced GTP- 99.4 1.1E-13 3.8E-18 124.7 5.7 64 1-66 541-604 (608)
2 3zvr_A Dynamin-1; hydrolase, D 99.3 1.8E-12 6.3E-17 122.3 3.5 63 1-65 700-762 (772)
3 3t34_A Dynamin-related protein 94.8 0.0028 9.6E-08 52.3 -1.5 23 41-63 333-355 (360)
4 1yoz_A Hypothetical protein AF 80.3 1.4 4.7E-05 33.8 3.3 59 11-71 23-81 (116)
5 3w03_C DNA repair protein XRCC 65.1 16 0.00053 29.6 6.3 44 12-56 140-183 (184)
6 4hpq_C ATG17, KLTH0D15642P; au 45.1 89 0.0031 27.8 8.3 53 5-66 315-367 (413)
7 3kor_A Possible Trp repressor; 42.0 9.6 0.00033 29.0 1.4 66 2-69 15-80 (119)
8 2rqw_B 24-meric peptide from s 38.1 20 0.00067 21.1 2.0 18 146-163 7-24 (26)
9 2oxj_A Hybrid alpha/beta pepti 37.5 38 0.0013 21.0 3.3 25 31-55 7-31 (34)
10 3p8c_D Wiskott-aldrich syndrom 37.5 90 0.0031 26.6 6.9 57 7-64 26-82 (279)
11 3hd7_A Vesicle-associated memb 36.5 1.1E+02 0.0037 21.4 7.7 51 6-65 9-59 (91)
12 3c3f_A Alpha/beta peptide with 36.3 41 0.0014 20.9 3.3 25 31-55 7-31 (34)
13 4aj5_1 SKA3, spindle and kinet 35.0 81 0.0028 23.5 5.5 41 7-49 47-87 (101)
14 3c3g_A Alpha/beta peptide with 34.8 45 0.0015 20.5 3.3 25 31-55 6-30 (33)
15 1a93_A Coiled coil, LZ, MYC pr 34.1 25 0.00084 21.7 2.1 24 35-58 10-33 (34)
16 2bni_A General control protein 33.6 32 0.0011 21.3 2.6 25 31-55 7-31 (34)
17 1nkp_B MAX protein, MYC proto- 30.1 1.3E+02 0.0043 20.2 7.5 62 5-66 3-81 (83)
18 2py8_A Hypothetical protein RB 29.2 96 0.0033 24.3 5.3 27 28-54 51-81 (147)
19 3frw_A Putative Trp repressor 28.5 47 0.0016 24.7 3.3 59 13-71 7-65 (107)
20 3iyn_Q Protein IX, PIX, hexon- 28.0 31 0.0011 27.1 2.3 37 36-73 93-131 (140)
21 2hy6_A General control protein 27.7 69 0.0024 19.8 3.3 25 31-55 7-31 (34)
22 3m48_A General control protein 27.2 55 0.0019 20.1 2.8 24 31-54 6-29 (33)
23 2yy0_A C-MYC-binding protein; 27.1 89 0.0031 20.2 4.1 41 24-64 9-51 (53)
24 3mvp_A TETR/ACRR transcription 26.9 93 0.0032 21.6 4.4 51 4-55 60-110 (217)
25 2r2v_A GCN4 leucine zipper; co 26.8 73 0.0025 19.7 3.3 25 31-55 7-31 (34)
26 3pvv_A Chromosomal replication 25.8 94 0.0032 22.1 4.4 26 31-56 71-96 (101)
27 1gl2_A Endobrevin; membrane pr 25.5 1.4E+02 0.0049 19.4 6.4 40 6-47 13-52 (65)
28 1hjb_A Ccaat/enhancer binding 25.5 1E+02 0.0036 21.9 4.5 36 31-66 42-77 (87)
29 2wq1_A General control protein 25.2 83 0.0028 19.3 3.3 25 31-55 6-30 (33)
30 1yye_A ER-beta, estrogen recep 25.0 2.6E+02 0.0088 22.1 7.8 46 11-56 164-215 (268)
31 3vi8_A Peroxisome proliferator 24.9 1.6E+02 0.0055 23.6 6.1 56 4-59 184-253 (273)
32 3ka1_A RBCX protein; chaperone 24.5 1.4E+02 0.0047 23.0 5.3 26 28-53 51-80 (126)
33 1use_A VAsp, vasodilator-stimu 24.4 1.1E+02 0.0039 19.8 4.1 29 11-39 9-37 (45)
34 2qwt_A Transcriptional regulat 23.6 1.7E+02 0.006 20.4 5.5 25 14-38 55-79 (196)
35 1uo4_A General control protein 23.4 72 0.0024 19.7 2.8 25 31-55 7-31 (34)
36 1l2j_A Estrogen receptor beta; 23.4 2.7E+02 0.0093 22.0 7.1 6 4-9 167-172 (271)
37 2zxx_A Geminin; coiled-coil, c 23.0 88 0.003 22.3 3.7 40 21-61 38-77 (79)
38 2p1t_A Retinoic acid receptor 22.9 2.2E+02 0.0077 21.5 6.3 47 10-56 166-215 (240)
39 1kd8_B GABH BLL, GCN4 acid bas 22.3 99 0.0034 19.3 3.3 26 31-56 7-32 (36)
40 2ocf_A Estrogen receptor; estr 22.1 3.2E+02 0.011 22.2 7.8 49 11-59 178-232 (298)
41 2rek_A Putative TETR-family tr 22.0 2E+02 0.0069 19.9 6.1 25 14-38 58-82 (199)
42 2e2r_A Estrogen-related recept 21.7 2.8E+02 0.0096 21.4 7.0 48 10-57 172-222 (244)
43 3loc_A HTH-type transcriptiona 21.4 1.8E+02 0.0061 20.0 5.0 29 14-42 61-89 (212)
44 1y9b_A Conserved hypothetical 21.4 2.1E+02 0.0073 19.9 5.7 42 6-47 36-77 (90)
45 1sfc_A VAMP 2, protein (synapt 20.9 2.3E+02 0.0077 20.0 8.0 40 6-47 34-73 (96)
46 2w31_A Globin; oxygen transpor 20.9 82 0.0028 22.5 3.3 38 10-49 27-64 (162)
47 1or4_A Heme-based aerotactic t 20.9 1E+02 0.0036 22.9 3.9 31 10-42 57-87 (178)
48 3v3e_B Nuclear receptor subfam 20.7 2.6E+02 0.0088 22.1 6.5 52 4-55 158-224 (257)
49 1x3a_A Synapse associated prot 20.6 68 0.0023 23.1 2.7 22 31-52 46-67 (100)
50 3b5n_A Synaptobrevin homolog 1 20.5 1.8E+02 0.0061 18.6 8.0 51 6-65 6-56 (61)
No 1
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.42 E-value=1.1e-13 Score=124.67 Aligned_cols=64 Identities=11% Similarity=0.170 Sum_probs=61.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031096 1 MSQEAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLS 66 (166)
Q Consensus 1 ~VPKAIV~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLs 66 (166)
+|||+||||+|+.+++.||++|+.+||+ .+.+++||+||+.+++||++|+++++.|++|.+.|+
T Consensus 541 ~vP~~I~~~lv~~~~~~lq~~l~~~l~~--~~~~~~ll~E~~~~~~~R~~l~~~~~~L~~A~~~l~ 604 (608)
T 3szr_A 541 HIPLIIQFFMLQTYGQQLQKAMLQLLQD--KDTYSWLLKERSDTSDKRKFLKERLARLTQARRRLA 604 (608)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTTTTC--HHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhc--chhHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999998 788999999999999999999999999999998775
No 2
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.25 E-value=1.8e-12 Score=122.27 Aligned_cols=63 Identities=14% Similarity=0.265 Sum_probs=59.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhh
Q 031096 1 MSQEAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQL 65 (166)
Q Consensus 1 ~VPKAIV~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qL 65 (166)
+|||+|||++||.+|+-|+++|+++||+ ...+++||.|++.+++||++|.+|+.+||+|.+-+
T Consensus 700 ~~pk~im~~~vn~~k~~~~~el~~~ly~--~~~~~~lm~Es~~~~~~r~~~~~~~~~l~~a~~ii 762 (772)
T 3zvr_A 700 LMPKTIMHLMINNTKEFIFSELLANLYS--CGDQNTLMEESAEQAQRRDEMLRMYHALKEALSII 762 (772)
T ss_dssp HHHHHHHHHTHHHHHHHHHHTHHHHHHH--TCCTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999 66899999999999999999999999999997654
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.82 E-value=0.0028 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Q 031096 41 DQNVKRRRDRYQKQSELLSKLTR 63 (166)
Q Consensus 41 D~~v~~RRe~c~K~LeLlkkAs~ 63 (166)
||+||+||+.|.|+|+||+.|-.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~ 355 (360)
T 3t34_A 333 DPAIMERRSAISKRLELYRAAQS 355 (360)
T ss_dssp ----CCCTTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999854
No 4
>1yoz_A Hypothetical protein AF0941; APC5573, midwest center for structural genomics, MCSG, protein structure initiative, PSI, structural genomics; 2.00A {Archaeoglobus fulgidus} SCOP: a.253.1.1
Probab=80.30 E-value=1.4 Score=33.80 Aligned_cols=59 Identities=22% Similarity=0.148 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 031096 11 VEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNR 71 (166)
Q Consensus 11 V~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLsihdnR 71 (166)
|.+||+=+=.+=..++.+..-+.+-.+..--....+.=+.|.++|.+| |..||++|=+|
T Consensus 23 VeeAk~L~D~eni~EmFRsD~E~I~~~f~~G~~t~EEa~~nl~~LK~Y--avSQL~~Hy~r 81 (116)
T 1yoz_A 23 VEEADKLLDQKNIFEMFRSDCEEILNLYKSGKAEKEEVQRNFYLLKTY--VVSQLSIHFER 81 (116)
T ss_dssp GGGHHHHTCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH--HHHTHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHhhHHHHHHHHHcCCccHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 566655444444555555555555556666666677888999999998 78999999999
No 5
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=65.10 E-value=16 Score=29.62 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 031096 12 EKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSE 56 (166)
Q Consensus 12 ~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~Le 56 (166)
.++...|++.++..+... ......|-.|++-+.+.+.+|.++||
T Consensus 140 ~e~i~elid~~ld~~~~L-~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 140 AEVIRELICYCLDTIAEN-QAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667888888887775 56789999999999999999999987
No 6
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=45.14 E-value=89 Score=27.76 Aligned_cols=53 Identities=30% Similarity=0.471 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031096 5 AVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLS 66 (166)
Q Consensus 5 AIV~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLs 66 (166)
..++.++...++ |..||..... -...||.| |.+||.-.+++-.+++++.++|-
T Consensus 315 ~~~~~~~~~~~~--L~~~Y~~f~~----aY~~lL~E---v~RRr~~~~~~~~i~~~~~~~L~ 367 (413)
T 4hpq_C 315 ASCLEDIRQTRN--LLDFYANFER----SYHNLLKE---VKRRKETAAKLSQILKSCETQLE 367 (413)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444 6667777665 56667774 88888888888899988888874
No 7
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=41.96 E-value=9.6 Score=28.99 Aligned_cols=66 Identities=9% Similarity=0.131 Sum_probs=34.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 031096 2 SQEAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHD 69 (166)
Q Consensus 2 VPKAIV~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLsihd 69 (166)
||.-.| +..+-|+...++||..|..-.....-..+-||=-....++.+.+|+++++-+.+.++..|
T Consensus 15 ~~~~~m--~~~~~K~~~~d~L~~AIl~l~~~ee~~~fl~dL~T~~E~~aLs~R~eV~klL~~G~syre 80 (119)
T 3kor_A 15 VPRGSM--QIEKLRGAALDELFDAILTLENREECYQFFDDLCTVNEIQSLSQRLQVAKMIKQGYTYAT 80 (119)
T ss_dssp ----CC--GGGGGCSHHHHHHHHHHHTCCSHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred Cccchh--hHhhhccccHHHHHHHHHHhCCHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHcCCCHHH
Confidence 454444 344557777777777776543322222222222234555666666777777766666554
No 8
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=38.09 E-value=20 Score=21.13 Aligned_cols=18 Identities=39% Similarity=0.730 Sum_probs=13.7
Q ss_pred cCCCCCCCCCCCCCCCCC
Q 031096 146 RRTPNRVPPPPPPTQSGS 163 (166)
Q Consensus 146 rrtp~r~pp~pp~~~~~~ 163 (166)
+-.|.|+.|-||++++.+
T Consensus 7 KFiPsRPAPKPP~s~t~s 24 (26)
T 2rqw_B 7 KFIPSRPAPKPPSSASAS 24 (26)
T ss_dssp SSCCSSCCCCCSSCSCCC
T ss_pred ccccCCCCCCCCCCCccc
Confidence 678999888888766544
No 9
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=37.54 E-value=38 Score=21.00 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=18.4
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHH
Q 031096 31 TARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c~K~L 55 (166)
+++.++||.|...+..+=++++.+|
T Consensus 7 E~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 7 EXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5678999999988877666555544
No 10
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=37.54 E-value=90 Score=26.61 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhh
Q 031096 7 VLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQ 64 (166)
Q Consensus 7 V~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~q 64 (166)
..|..+-+=-.|+.+| +.|.+-.++.|.+|-.|=..+.+|-..++.++.-|....-|
T Consensus 26 Le~V~n~tL~gilRQL-~dLs~~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v~~ 82 (279)
T 3p8c_D 26 LECVTNISLANIIRQL-SSLSKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSVTQ 82 (279)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444555555666665 56667779999999999999999999999999999977755
No 11
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=36.55 E-value=1.1e+02 Score=21.38 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhh
Q 031096 6 VVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQL 65 (166)
Q Consensus 6 IV~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qL 65 (166)
-+.-+|.+.|+-|.+.+=.-|.+ ++.|++|-+..+++.. ....|++.+++|
T Consensus 9 ~vq~ev~evk~iM~~NI~kvL~R--gekL~~L~~kt~~L~~-------~s~~F~~~A~~l 59 (91)
T 3hd7_A 9 QTQAQVDEVVDIMRVNVDKVLER--DQKLSELDDRADALQA-------GASQFETSAAKL 59 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 35678999999999998888888 8899988777766554 444444444444
No 12
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=36.28 E-value=41 Score=20.85 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=18.4
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHH
Q 031096 31 TARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c~K~L 55 (166)
++..++||.|...+...=.+++.+|
T Consensus 7 EdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5678899998888877666665554
No 13
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=35.01 E-value=81 Score=23.53 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHH
Q 031096 7 VLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRD 49 (166)
Q Consensus 7 V~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe 49 (166)
+||=|..-|+++++.|-.+-.. ...+.+.++...-+|+|=.
T Consensus 47 l~seV~~LK~dv~~~L~k~~~e--~qe~~~FIKa~kvL~~rns 87 (101)
T 4aj5_1 47 LHSEVQTLKDDINILLDKARLE--NQEGIDFIKATKVLMEKNS 87 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHhH
Confidence 6899999999999999988777 7778888888877777643
No 14
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=34.85 E-value=45 Score=20.54 Aligned_cols=25 Identities=8% Similarity=0.172 Sum_probs=18.0
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHH
Q 031096 31 TARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c~K~L 55 (166)
++..++||.|...+...=.+++.+|
T Consensus 6 EdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 6 EXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6678899998888876655555544
No 15
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=34.14 E-value=25 Score=21.69 Aligned_cols=24 Identities=25% Similarity=0.589 Sum_probs=19.8
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHH
Q 031096 35 EELLQEDQNVKRRRDRYQKQSELL 58 (166)
Q Consensus 35 eeLL~ED~~v~~RRe~c~K~LeLl 58 (166)
..|+.|-+.+..|++.+.++|+-|
T Consensus 10 ~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 10 QKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468888888899999988888765
No 16
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=33.65 E-value=32 Score=21.31 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=18.8
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHH
Q 031096 31 TARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c~K~L 55 (166)
++.+++||.|...+...=.+++++|
T Consensus 7 EdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 7 EDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHh
Confidence 6788999999888877666665554
No 17
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=30.09 E-value=1.3e+02 Score=20.23 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-----------------HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031096 5 AVVLCQVEKAKEDMLNQLYSSVGAQS-----------------TARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLS 66 (166)
Q Consensus 5 AIV~cqV~~AKe~Lln~Lys~Lykke-----------------~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLs 66 (166)
=..|..+++-.+.-+|..|..|...= -+-|..|-.+...+.+..+++.+..+.|+.-..+|+
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35788888888888888888876532 234666777777777777777777777776666554
No 18
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=29.23 E-value=96 Score=24.30 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=19.8
Q ss_pred hccHHHHHHHHhhCHHHHHH----HHHHHHH
Q 031096 28 AQSTARIEELLQEDQNVKRR----RDRYQKQ 54 (166)
Q Consensus 28 kke~~~LeeLL~ED~~v~~R----Re~c~K~ 54 (166)
+..++-|++|+.|++.++.| |+.+.+.
T Consensus 51 ~DGd~fL~~Lmre~~~LAlRIMeVR~~ya~e 81 (147)
T 2py8_A 51 QNGETFLTELLDENKELVLRILAVREDIAES 81 (147)
T ss_dssp SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 34567899999999998766 5555544
No 19
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=28.49 E-value=47 Score=24.73 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 031096 13 KAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNR 71 (166)
Q Consensus 13 ~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLsihdnR 71 (166)
+-|+...++||..|-..+...--..+-||=-+...++.+.+++++.+-+.+-+|+++--
T Consensus 7 ~~~~~~~d~L~~ail~l~~~ee~~~ffedL~T~~E~~alaqR~~Ia~lL~~G~SyreIa 65 (107)
T 3frw_A 7 KIRTEEVDHLFEAILCLKNKEECYTFFEDVCTINELLSLSQRFEVAKMLTDKRTYLDIS 65 (107)
T ss_dssp -CCCHHHHHHHHHHHTCCSHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hhccHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 34566778888888776666666666777778888999999999999988888887753
No 20
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=28.03 E-value=31 Score=27.07 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=21.0
Q ss_pred HHHhhC--HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 031096 36 ELLQED--QNVKRRRDRYQKQSELLSKLTRQLSIHDNRAA 73 (166)
Q Consensus 36 eLL~ED--~~v~~RRe~c~K~LeLlkkAs~qLsihdnRaa 73 (166)
+++.|| -.|..+=|.+.++|+.+..-.+||+ ..-+|+
T Consensus 93 s~~red~L~~~laqLe~ls~qL~~ls~~v~~L~-~q~~~~ 131 (140)
T 3iyn_Q 93 SSARDDKLTALLAQLDSLTRELNVVSQQLLDLR-QQVSAL 131 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHTTTT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 444444 2344555666666777777677776 334444
No 21
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=27.70 E-value=69 Score=19.81 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=18.5
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHH
Q 031096 31 TARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c~K~L 55 (166)
++..++||.+...+...=.+++++|
T Consensus 7 EdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 7 ADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5678899998888877666665554
No 22
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=27.22 E-value=55 Score=20.12 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=17.0
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHH
Q 031096 31 TARIEELLQEDQNVKRRRDRYQKQ 54 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c~K~ 54 (166)
+++.++||.|...+...=.+++..
T Consensus 6 E~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 6 EAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567889999988877665555443
No 23
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.11 E-value=89 Score=20.23 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=29.6
Q ss_pred HHHh--hccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhh
Q 031096 24 SSVG--AQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQ 64 (166)
Q Consensus 24 s~Ly--kke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~q 64 (166)
..|+ .-+...++.|..|...+.++-+.+.++++-|++=.+|
T Consensus 9 ~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 9 HHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445 5567889999999999999999988888887764443
No 24
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=26.88 E-value=93 Score=21.58 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHH
Q 031096 4 EAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 4 KAIV~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~L 55 (166)
|+.+|--. ..|++|+..++..+...-.+.+.+.+..++........+...+
T Consensus 60 ~~t~Y~~F-~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (217)
T 3mvp_A 60 VGTLYAYF-ASKEDILTALLKRYNDFFLTTIFADINSQDSLDRFKKNPKEWL 110 (217)
T ss_dssp HHHHHHHC-SSHHHHHHHHHHHHHHHHHHHTHHHHSSHHHHHHHHHCHHHHH
T ss_pred hhHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 34443333 4688888888888776555566666666555544433333333
No 25
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=26.81 E-value=73 Score=19.69 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=17.5
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHH
Q 031096 31 TARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c~K~L 55 (166)
++.+++||.|...+...=.+++++|
T Consensus 7 edKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 7 ADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5577888888777777666666554
No 26
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=25.79 E-value=94 Score=22.13 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=19.9
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHH
Q 031096 31 TARIEELLQEDQNVKRRRDRYQKQSE 56 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c~K~Le 56 (166)
-..+++++.+|+.+.+.=+++.+.|.
T Consensus 71 ~~ki~~~~~~d~~l~~~i~~l~~~l~ 96 (101)
T 3pvv_A 71 QRKILSEMAERREVFDHVKELTTRIR 96 (101)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 56788999999988777666666655
No 27
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=25.52 E-value=1.4e+02 Score=19.40 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHH
Q 031096 6 VVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRR 47 (166)
Q Consensus 6 IV~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~R 47 (166)
-|.-+|.+.|.-|.+-+-.=|.+ ++.|+.|.+-.+.+...
T Consensus 13 ~vq~~l~evk~iM~~NI~~vL~R--gekLd~L~~ks~~L~~~ 52 (65)
T 1gl2_A 13 NLQSEVEGVKNIMTQNVERILAR--GENLDHLRNKTEDLEAT 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHH
Confidence 36678999999998888888888 88898887766665543
No 28
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.47 E-value=1e+02 Score=21.89 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=29.8
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031096 31 TARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLS 66 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLs 66 (166)
....++|-.|+..+..+=+.+.+.+..|+.+..|+-
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 346788999999999999999999999999888753
No 29
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=25.17 E-value=83 Score=19.34 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=17.7
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHH
Q 031096 31 TARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c~K~L 55 (166)
++.+++||.+...+...=.+++++|
T Consensus 6 EdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 6 EDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 6678888888887776655555544
No 30
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=24.95 E-value=2.6e+02 Score=22.10 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHH------hhccHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 031096 11 VEKAKEDMLNQLYSSV------GAQSTARIEELLQEDQNVKRRRDRYQKQSE 56 (166)
Q Consensus 11 V~~AKe~Lln~Lys~L------ykke~~~LeeLL~ED~~v~~RRe~c~K~Le 56 (166)
|++..+.++..|..-+ +.....+|.+||.==+.+..--.++...|-
T Consensus 164 v~~~q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LLl~Lp~Lr~i~~~~~e~l~ 215 (268)
T 1yye_A 164 LAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLL 215 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443333 233456788888766666444444444433
No 31
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=24.89 E-value=1.6e+02 Score=23.59 Aligned_cols=56 Identities=16% Similarity=0.320 Sum_probs=32.4
Q ss_pred hHHHHH-----------HHHHHHHHHHHHHHHHHh---hccHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 031096 4 EAVVLC-----------QVEKAKEDMLNQLYSSVG---AQSTARIEELLQEDQNVKRRRDRYQKQSELLS 59 (166)
Q Consensus 4 KAIV~c-----------qV~~AKe~Lln~Lys~Ly---kke~~~LeeLL~ED~~v~~RRe~c~K~LeLlk 59 (166)
||||+| +|++..+.++.-|..-+. .....+|..||.==|.+..=-.+..+.|-.+|
T Consensus 184 kAivLf~pd~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~p~~~~rF~kLL~~Lp~LR~l~~~~~e~l~~~k 253 (273)
T 3vi8_A 184 VAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIK 253 (273)
T ss_dssp HHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677766 677777766666655443 33455788887766666444344444444444
No 32
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=24.46 E-value=1.4e+02 Score=22.97 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=19.2
Q ss_pred hccHHHHHHHHhhCHHHHHH----HHHHHH
Q 031096 28 AQSTARIEELLQEDQNVKRR----RDRYQK 53 (166)
Q Consensus 28 kke~~~LeeLL~ED~~v~~R----Re~c~K 53 (166)
+..++-|+.|+.|+++++.| |+-+.+
T Consensus 51 ~DGe~fl~~L~~E~~~LA~RIM~vR~hla~ 80 (126)
T 3ka1_A 51 QDGERYLEALFREQPDLGFRILTVREHLAE 80 (126)
T ss_dssp SCHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 34577899999999998766 554444
No 33
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=24.40 E-value=1.1e+02 Score=19.78 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHh
Q 031096 11 VEKAKEDMLNQLYSSVGAQSTARIEELLQ 39 (166)
Q Consensus 11 V~~AKe~Lln~Lys~Lykke~~~LeeLL~ 39 (166)
.+.-|+.||.++-.+|.|.-++-|+.+-.
T Consensus 9 le~~KqEIL~E~RkElqK~K~EIIeAi~~ 37 (45)
T 1use_A 9 LQRVKQELLEEVKKELQKVKEEIIEAFVQ 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888865555555443
No 34
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=23.60 E-value=1.7e+02 Score=20.45 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHH
Q 031096 14 AKEDMLNQLYSSVGAQSTARIEELL 38 (166)
Q Consensus 14 AKe~Lln~Lys~Lykke~~~LeeLL 38 (166)
.|++|+..++......-.+.+.+.+
T Consensus 55 sK~~L~~~~~~~~~~~~~~~~~~~~ 79 (196)
T 2qwt_A 55 TKQALVVAVAEDRVRRIVDHARTLL 79 (196)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4777777777766654333444433
No 35
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=23.40 E-value=72 Score=19.74 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=17.1
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHH
Q 031096 31 TARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c~K~L 55 (166)
+++.++||.|...+...=.+++++|
T Consensus 7 EdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 7 EDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5678888888887776655555443
No 36
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=23.36 E-value=2.7e+02 Score=21.99 Aligned_cols=6 Identities=33% Similarity=0.600 Sum_probs=4.4
Q ss_pred hHHHHH
Q 031096 4 EAVVLC 9 (166)
Q Consensus 4 KAIV~c 9 (166)
||||+|
T Consensus 167 kAIvLf 172 (271)
T 1l2j_A 167 KAMILL 172 (271)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 677777
No 37
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.97 E-value=88 Score=22.25 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=25.0
Q ss_pred HHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Q 031096 21 QLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKL 61 (166)
Q Consensus 21 ~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkA 61 (166)
+|+..|..+ ...|..|..|+..+++--+..+.+.++++++
T Consensus 38 ~Lh~~ie~~-~eEi~~LkeEN~~L~el~~~~~~laevl~~l 77 (79)
T 2zxx_A 38 KLHKEIEQK-DSEIARLRKENKDLAEVAEHVQYMAEVIERL 77 (79)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556544 3455667777777766666667777666654
No 38
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=22.86 E-value=2.2e+02 Score=21.54 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHH---hhccHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 031096 10 QVEKAKEDMLNQLYSSV---GAQSTARIEELLQEDQNVKRRRDRYQKQSE 56 (166)
Q Consensus 10 qV~~AKe~Lln~Lys~L---ykke~~~LeeLL~ED~~v~~RRe~c~K~Le 56 (166)
+|++.++.+++.|..-+ +.....+|.+||.==+.+..--.++...+.
T Consensus 166 ~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~Lr~~~~~~~e~l~ 215 (240)
T 2p1t_A 166 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLF 215 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555543322 333456788888766665544444444443
No 39
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=22.31 E-value=99 Score=19.32 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=19.4
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHH
Q 031096 31 TARIEELLQEDQNVKRRRDRYQKQSE 56 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c~K~Le 56 (166)
++..++||.+...+...=.+++++|.
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 56788999988888877666666553
No 40
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=22.10 E-value=3.2e+02 Score=22.18 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHH------hhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 031096 11 VEKAKEDMLNQLYSSV------GAQSTARIEELLQEDQNVKRRRDRYQKQSELLS 59 (166)
Q Consensus 11 V~~AKe~Lln~Lys~L------ykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlk 59 (166)
|++.++.++..|..-+ +.....+|.+||.==+.+..--.++...|..++
T Consensus 178 ve~lqe~~~~aL~~y~~~~~~~~~~~~~RF~~LLl~Lp~Lr~i~~~~~e~l~~~k 232 (298)
T 2ocf_A 178 IHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMK 232 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555554433 223456788888776766655555555554443
No 41
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=21.99 E-value=2e+02 Score=19.86 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHH
Q 031096 14 AKEDMLNQLYSSVGAQSTARIEELL 38 (166)
Q Consensus 14 AKe~Lln~Lys~Lykke~~~LeeLL 38 (166)
.|++|+..++......-.+.+..+.
T Consensus 58 sK~~L~~~~~~~~~~~~~~~~~~~~ 82 (199)
T 2rek_A 58 SRWGLLQAVFQERVAQLCDEARSLA 82 (199)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888888888887764444444433
No 42
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=21.68 E-value=2.8e+02 Score=21.37 Aligned_cols=48 Identities=10% Similarity=0.072 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHH---hhccHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 031096 10 QVEKAKEDMLNQLYSSV---GAQSTARIEELLQEDQNVKRRRDRYQKQSEL 57 (166)
Q Consensus 10 qV~~AKe~Lln~Lys~L---ykke~~~LeeLL~ED~~v~~RRe~c~K~LeL 57 (166)
+|++-++.++.-|..-+ |.....+|.+||.==+.+..--.++.+.+..
T Consensus 172 ~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~ 222 (244)
T 2e2r_A 172 AVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYN 222 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665554433 3334567888887666665555555554443
No 43
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=21.37 E-value=1.8e+02 Score=19.99 Aligned_cols=29 Identities=10% Similarity=0.072 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhhCH
Q 031096 14 AKEDMLNQLYSSVGAQSTARIEELLQEDQ 42 (166)
Q Consensus 14 AKe~Lln~Lys~Lykke~~~LeeLL~ED~ 42 (166)
.|++|+..++..+...-...+..+...++
T Consensus 61 sKe~L~~~~~~~~~~~~~~~~~~~~~~~~ 89 (212)
T 3loc_A 61 SKEALYIAVLRQILDIWLAPLKAFREDFA 89 (212)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 57888887777776544444554444333
No 44
>1y9b_A Conserved hypothetical protein; MCSG, structural genomics, conserved hypoth protein, PSI, protein structure initiative; 2.20A {Vibrio cholerae o1 biovar eltor} SCOP: a.43.1.9
Probab=21.36 E-value=2.1e+02 Score=19.87 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHH
Q 031096 6 VVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRR 47 (166)
Q Consensus 6 IV~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~R 47 (166)
|+-+-++.|++.|.++-.-.|....-..|-++|++-|.--.+
T Consensus 36 v~~aa~~~A~~vi~~~~~~~Ls~~~~~~f~~aLd~Pp~pn~~ 77 (90)
T 1y9b_A 36 VLNAAIEKAKQVIEREQALKLSQADAVLLMEALDNPAVVNAK 77 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcceeeeCHHHHHHHHHHHhCCCCCCHH
Confidence 677888999999999999999998888999999876655433
No 45
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=20.95 E-value=2.3e+02 Score=20.01 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHH
Q 031096 6 VVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRR 47 (166)
Q Consensus 6 IV~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~R 47 (166)
-|..+|.+.|.-|.+-+=.=|.+ ++.|++|.+-.+.+...
T Consensus 34 ~vq~eldeVk~IM~~NI~kvLeR--GEkLd~L~dkse~L~~~ 73 (96)
T 1sfc_A 34 QTQAQVDEVVDIMRVNVDKVLER--DQKLSELDDRADALQAG 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHH
Confidence 46678889999888888777777 88898887777666544
No 46
>2w31_A Globin; oxygen transport, hexacoordination; HET: HEM; 1.50A {Geobacter sulfurreducens}
Probab=20.89 E-value=82 Score=22.46 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHH
Q 031096 10 QVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRD 49 (166)
Q Consensus 10 qV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe 49 (166)
.+...-+.+.+.||..|.. ...+..++..++.+.+.+.
T Consensus 27 ~l~~~~~~i~~~FY~~l~~--~pe~~~~f~~~~~~~~l~~ 64 (162)
T 2w31_A 27 LAETNKERLADQFYDYLLG--IPETAEFLKEDLVLQKLKQ 64 (162)
T ss_dssp HHHHTHHHHHHHHHHHHHT--SHHHHGGGSTHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHc--CHHHHHHHcCcHHHHHHHH
Confidence 4667778999999999996 6778888776654443333
No 47
>1or4_A Heme-based aerotactic transducer hemat; globin fold, signaling protein; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.2 PDB: 1or6_A*
Probab=20.87 E-value=1e+02 Score=22.87 Aligned_cols=31 Identities=3% Similarity=0.371 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCH
Q 031096 10 QVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQ 42 (166)
Q Consensus 10 qV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~ 42 (166)
.+...-+.|.++||..|.. ...+..++...+
T Consensus 57 ~l~~~~~~ivd~FY~~l~~--~pe~~~~f~~~~ 87 (178)
T 1or4_A 57 LIQENIVNIVDAFYKNLDH--ESSLMDIINDHS 87 (178)
T ss_dssp HHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhc--CHHHHHHhCCch
Confidence 5677788999999999997 677778876533
No 48
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=20.72 E-value=2.6e+02 Score=22.13 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=30.6
Q ss_pred hHHHHH----------HHHHHHHHHHHHHHHHHhh-----ccHHHHHHHHhhCHHHHHHHHHHHHHH
Q 031096 4 EAVVLC----------QVEKAKEDMLNQLYSSVGA-----QSTARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 4 KAIV~c----------qV~~AKe~Lln~Lys~Lyk-----ke~~~LeeLL~ED~~v~~RRe~c~K~L 55 (166)
||||+| +|+...+.++.-|..-+.. ....+|..||.-=|.+..--.++.++|
T Consensus 158 kAivLfsd~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~~~p~~~~rf~kLL~~Lp~LR~l~~~~~e~l 224 (257)
T 3v3e_B 158 SALVLITDRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRI 224 (257)
T ss_dssp HHHHHSSCCTTCSSHHHHHHHHHHHHHHHHHHHHHHHCSCC-CHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677776 6777777777766554422 234678888876666644433443333
No 49
>1x3a_A Synapse associated protein 1; BSD domain, homolog of the drosophila SAP47, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=20.57 E-value=68 Score=23.11 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=18.2
Q ss_pred HHHHHHHHhhCHHHHHHHHHHH
Q 031096 31 TARIEELLQEDQNVKRRRDRYQ 52 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c~ 52 (166)
.+.+..||.+||+|.+-|.++.
T Consensus 46 ~~~i~~lL~~dp~L~~l~~~LV 67 (100)
T 1x3a_A 46 YPVALVMLQEDELLSKMRFALV 67 (100)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCHHHHHHHHHHC
Confidence 3578889999999999888753
No 50
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=20.53 E-value=1.8e+02 Score=18.65 Aligned_cols=51 Identities=6% Similarity=0.136 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhh
Q 031096 6 VVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQL 65 (166)
Q Consensus 6 IV~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qL 65 (166)
-+.-+|.+.|.-|.+.+-.=|.+ ++.|+.|.+-.+++... ...|++-+++|
T Consensus 6 ~vq~~l~evk~iM~~NI~~vl~R--gekLd~L~~ks~~L~~~-------s~~F~~~a~~l 56 (61)
T 3b5n_A 6 ELQAEIDDTVGIMRDNINKVAER--GERLTSIEDKADNLAVS-------AQGFKRGANRV 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 35678999999999888888888 88898887776665544 44455544444
Done!