Query 031096
Match_columns 166
No_of_seqs 87 out of 101
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 14:26:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031096.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031096hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yoza1 a.253.1.1 (A:11-124) H 52.9 5 0.00036 28.4 3.1 42 30-71 20-79 (114)
2 d1nkpa_ a.38.1.1 (A:) Myc prot 48.7 28 0.0021 22.0 8.6 62 5-66 7-86 (88)
3 d1hf8a1 a.7.8.2 (A:150-281) Cl 44.2 11 0.00082 26.7 4.0 52 11-65 44-95 (132)
4 d1p5qa1 a.118.8.1 (A:258-427) 43.0 25 0.0018 23.6 5.5 41 33-73 118-169 (170)
5 d2py8a1 a.280.1.1 (A:2-121) Ru 41.6 46 0.0033 23.6 7.0 26 29-54 51-80 (120)
6 d3bb9a1 d.17.4.16 (A:27-147) U 40.3 5.2 0.00038 25.0 1.4 31 11-41 1-31 (121)
7 d2pv7a1 a.100.1.12 (A:244-371) 40.2 41 0.003 22.4 6.3 44 21-64 50-93 (128)
8 d1hx8a1 a.7.8.2 (A:167-299) AP 38.2 18 0.0013 25.6 4.2 33 31-65 60-92 (133)
9 d2id6a1 a.4.1.9 (A:1-75) Trans 35.2 12 0.00087 22.7 2.5 27 14-40 46-72 (75)
10 d2g9wa1 a.4.5.39 (A:3-124) Hyp 34.1 17 0.0013 24.3 3.4 28 13-40 92-119 (122)
11 d2gfna1 a.4.1.9 (A:4-80) Proba 33.9 20 0.0015 21.7 3.5 28 14-41 49-76 (77)
12 d1or4a_ a.1.1.2 (A:) Heme-base 33.5 25 0.0018 24.3 4.3 37 10-48 48-84 (169)
13 d2j7ya1 a.123.1.1 (A:217-452) 32.2 74 0.0054 22.5 7.0 45 11-55 165-215 (236)
14 d1y9ba1 a.43.1.9 (A:3-83) Hypo 31.2 60 0.0044 20.7 5.7 42 6-47 34-75 (81)
15 d1xpca_ a.123.1.1 (A:) Estroge 29.5 88 0.0064 22.4 7.1 36 10-45 168-209 (245)
16 d1nkpb_ a.38.1.1 (B:) Max prot 28.1 64 0.0046 20.0 8.4 62 4-65 2-80 (83)
17 d3e5ua2 b.82.3.2 (A:9-147) Chl 26.6 56 0.0041 20.9 5.0 39 30-68 100-139 (139)
18 d2b50b1 a.123.1.1 (B:211-475) 26.4 69 0.005 23.9 6.1 59 10-68 195-256 (265)
19 d2peqa1 a.280.1.1 (A:2-109) Ru 26.0 95 0.0069 21.3 6.4 23 29-51 51-73 (108)
20 d1pzla_ a.123.1.1 (A:) Hepatoc 25.1 74 0.0054 22.6 5.9 56 10-66 162-220 (233)
21 d1ft9a2 b.82.3.1 (A:2-133) CO- 22.4 52 0.0038 21.1 4.1 39 30-68 93-132 (132)
22 d1sgma1 a.4.1.9 (A:5-77) Putat 21.7 25 0.0018 21.0 2.2 27 14-40 46-72 (73)
23 d3c07a1 a.4.1.9 (A:15-89) Puta 21.6 25 0.0018 20.8 2.2 25 14-38 48-72 (75)
24 d1vi0a1 a.4.1.9 (A:6-77) Hypot 21.4 38 0.0027 20.0 3.0 25 14-38 44-68 (72)
25 d1y2oa1 a.238.1.3 (A:1-248) BA 21.3 1.3E+02 0.0095 21.2 7.6 42 8-53 83-125 (248)
26 d1eyha_ a.118.9.1 (A:) Epsin 1 21.1 40 0.0029 23.0 3.5 29 31-59 113-141 (144)
27 d1t56a1 a.4.1.9 (A:22-94) Ethr 20.6 39 0.0028 19.9 2.9 25 3-28 36-60 (73)
28 d3en8a1 d.17.4.20 (A:1-127) Un 20.3 21 0.0015 23.1 1.7 30 12-41 3-32 (127)
No 1
>d1yoza1 a.253.1.1 (A:11-124) Hypothetical protein AF0941 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=52.92 E-value=5 Score=28.37 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=33.5
Q ss_pred cHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH------------------HHhhhhhhhhh
Q 031096 30 STARIEELLQEDQNVKRRRDRYQKQSELLSK------------------LTRQLSIHDNR 71 (166)
Q Consensus 30 e~~~LeeLL~ED~~v~~RRe~c~K~LeLlkk------------------As~qLsihdnR 71 (166)
.-+..+.||+..-....-|..|..-|.|||. ...|||||=.|
T Consensus 20 sveeadklldqknifemfrsdceeilnlyksgkaekeevqrnfyllktyvvsqlsihfer 79 (114)
T d1yoza1 20 SVEEADKLLDQKNIFEMFRSDCEEILNLYKSGKAEKEEVQRNFYLLKTYVVSQLSIHFER 79 (114)
T ss_dssp CGGGHHHHTCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cHHHHHHHHhHHhHHHHHHhhHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888877778889999999999874 35799999988
No 2
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.66 E-value=28 Score=22.02 Aligned_cols=62 Identities=23% Similarity=0.251 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc------------------HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031096 5 AVVLCQVEKAKEDMLNQLYSSVGAQS------------------TARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLS 66 (166)
Q Consensus 5 AIV~cqV~~AKe~Lln~Lys~Lykke------------------~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLs 66 (166)
=..|..+++-.+.-+|..|..|...= -+.|..|-.+...+.+..+.+.+..+.|++...||+
T Consensus 7 R~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~ 86 (88)
T d1nkpa_ 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999998886421 234555555666666666677777777777766663
No 3
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=44.24 E-value=11 Score=26.66 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhh
Q 031096 11 VEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQL 65 (166)
Q Consensus 11 V~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qL 65 (166)
|..|=.-|..+++ +||..=.+-+-.||+- .....|..|.+-|++||+++.|.
T Consensus 44 i~~A~~llvkds~-~lY~~inegiinLLd~--fFem~k~da~~al~iykr~~~q~ 95 (132)
T d1hf8a1 44 INAAFMLLFKDAI-RLFAAYNEGIINLLEK--YFDMKKNQCKEGLDIYKKFLTRM 95 (132)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHHH
Confidence 3334333333333 2343334466666632 33345789999999999999985
No 4
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.02 E-value=25 Score=23.57 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=26.8
Q ss_pred HHHHHHh---hCHHHHHHHHHHHHH--------HHHHHHHHhhhhhhhhhhh
Q 031096 33 RIEELLQ---EDQNVKRRRDRYQKQ--------SELLSKLTRQLSIHDNRAA 73 (166)
Q Consensus 33 ~LeeLL~---ED~~v~~RRe~c~K~--------LeLlkkAs~qLsihdnRaa 73 (166)
.|+..|. .|+.+......|.++ -++|++..++|+-.|++|.
T Consensus 118 ~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~~~~~~~~ 169 (170)
T d1p5qa1 118 DFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAK 169 (170)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhc
Confidence 3444444 456666555555443 3468888999999999975
No 5
>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]}
Probab=41.65 E-value=46 Score=23.58 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=19.9
Q ss_pred ccHHHHHHHHhhCHHHHHH----HHHHHHH
Q 031096 29 QSTARIEELLQEDQNVKRR----RDRYQKQ 54 (166)
Q Consensus 29 ke~~~LeeLL~ED~~v~~R----Re~c~K~ 54 (166)
..++-|++|+.|++.++.| |+-+...
T Consensus 51 DGd~fl~~L~~e~~~lAlRIm~vRe~lAee 80 (120)
T d2py8a1 51 NGETFLTELLDENKELVLRILAVREDIAES 80 (120)
T ss_dssp SHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 4567899999999998776 6655544
No 6
>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]}
Probab=40.26 E-value=5.2 Score=24.97 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHhhC
Q 031096 11 VEKAKEDMLNQLYSSVGAQSTARIEELLQED 41 (166)
Q Consensus 11 V~~AKe~Lln~Lys~Lykke~~~LeeLL~ED 41 (166)
|+.|-.+++.+|+..+....-+.+..|+-+|
T Consensus 1 ~~~a~~~v~~~~~~A~~~~D~~~~~~l~a~D 31 (121)
T d3bb9a1 1 VDSAAGNVVKQFHAALQMGNEAIVRQSLAAN 31 (121)
T ss_dssp TTSHHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHhhCCC
Confidence 4567788999999999998899999998887
No 7
>d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}
Probab=40.25 E-value=41 Score=22.37 Aligned_cols=44 Identities=5% Similarity=0.044 Sum_probs=31.5
Q ss_pred HHHHHHhhccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhh
Q 031096 21 QLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQ 64 (166)
Q Consensus 21 ~Lys~Lykke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~q 64 (166)
...+-|....+.+..+++.+++.+.+-.+++.+.|+-++++.++
T Consensus 50 ~~~tRIa~~~p~lw~dI~~~N~~~~~~l~~~~~~l~~l~~~i~~ 93 (128)
T d2pv7a1 50 AMIGRLFAQDAELYADIIMDKSENLAVIETLKQTYDEALTFFEN 93 (128)
T ss_dssp HHHHHHHTSCHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35688888889999999999998887777777777777776554
No 8
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=38.21 E-value=18 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=23.7
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhh
Q 031096 31 TARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQL 65 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qL 65 (166)
.+-+-.||+- ..--.+..|.+-|++||+++.|.
T Consensus 60 negiinLLd~--fFem~k~da~~al~iyk~~~~q~ 92 (133)
T d1hx8a1 60 NDGIINLLEK--YFDMNKKHARDALDLYKKFLVRM 92 (133)
T ss_dssp HHHHHHHHHH--HTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHH
Confidence 3456666632 33344789999999999999985
No 9
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=35.19 E-value=12 Score=22.74 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhh
Q 031096 14 AKEDMLNQLYSSVGAQSTARIEELLQE 40 (166)
Q Consensus 14 AKe~Lln~Lys~Lykke~~~LeeLL~E 40 (166)
.|++|+..++..+...-.+.|++.|.+
T Consensus 46 ~k~~Ll~~~~~~~~~~~~~~~~~~l~~ 72 (75)
T d2id6a1 46 NKEELYYQAYMSVTEKLQKEFENFLMK 72 (75)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777666444455555543
No 10
>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=34.13 E-value=17 Score=24.32 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhh
Q 031096 13 KAKEDMLNQLYSSVGAQSTARIEELLQE 40 (166)
Q Consensus 13 ~AKe~Lln~Lys~Lykke~~~LeeLL~E 40 (166)
-+...++.+|+.+|...+-+.|++||++
T Consensus 92 gs~~~~~~~l~~~ls~~el~~L~~ll~~ 119 (122)
T d2g9wa1 92 GSRQAALVHFVERVGADEADALRRALAE 119 (122)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHh
Confidence 3456677777777777666666666664
No 11
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=33.91 E-value=20 Score=21.66 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhhC
Q 031096 14 AKEDMLNQLYSSVGAQSTARIEELLQED 41 (166)
Q Consensus 14 AKe~Lln~Lys~Lykke~~~LeeLL~ED 41 (166)
.|++|+..++..+...-.+.++++++++
T Consensus 49 ~K~~L~~~~~~~~~~~~~~~~~~~~~~~ 76 (77)
T d2gfna1 49 SRHELLLAALRRAGDIQGDRYRTILDEE 76 (77)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5777777777777776666666666543
No 12
>d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]}
Probab=33.47 E-value=25 Score=24.35 Aligned_cols=37 Identities=8% Similarity=0.401 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHHH
Q 031096 10 QVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRR 48 (166)
Q Consensus 10 qV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~RR 48 (166)
.|+...+.|++.||..|.. ...+..++.....+.+.+
T Consensus 48 ~i~~~~~~i~d~FY~~l~~--~Pe~~~~f~~~~~~erlk 84 (169)
T d1or4a_ 48 LIQENIVNIVDAFYKNLDH--ESSLMDIINDHSSVDRLK 84 (169)
T ss_dssp HHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc--CHHHHHHHcCccchHHHH
Confidence 4677888999999999977 677888886544443333
No 13
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=32.22 E-value=74 Score=22.51 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhh------ccHHHHHHHHhhCHHHHHHHHHHHHHH
Q 031096 11 VEKAKEDMLNQLYSSVGA------QSTARIEELLQEDQNVKRRRDRYQKQS 55 (166)
Q Consensus 11 V~~AKe~Lln~Lys~Lyk------ke~~~LeeLL~ED~~v~~RRe~c~K~L 55 (166)
|..+.+.+++.|+..+.+ ....+|.+||.-=|.+..-..++...|
T Consensus 165 v~~~~~~~~~~l~~~~~~~~~~~p~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l 215 (236)
T d2j7ya1 165 LTHLLNAVTDALVWVIAKSGISSQQQSVRLANLLMLLSHVRHISNKGMEHL 215 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666655532 123467777776666644443333333
No 14
>d1y9ba1 a.43.1.9 (A:3-83) Hypothetical protein VCA0482 (VCA0319) {Vibrio cholerae [TaxId: 666]}
Probab=31.22 E-value=60 Score=20.75 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHHHHHH
Q 031096 6 VVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRR 47 (166)
Q Consensus 6 IV~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~v~~R 47 (166)
|+-.-++.|++.|+++=.-.|....-+.|-++|++-+.--++
T Consensus 34 v~~aa~~~A~~vi~~~~~~~Ls~~~~~~f~~aLd~P~~pn~~ 75 (81)
T d1y9ba1 34 VLNAAIEKAKQVIEREQALKLSQADAVLLMEALDNPAVVNAK 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHheeeCHHHHHHHHHHHhCCCCCCHH
Confidence 667788999999999999999998889999999876655444
No 15
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.49 E-value=88 Score=22.45 Aligned_cols=36 Identities=14% Similarity=0.309 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhh------ccHHHHHHHHhhCHHHH
Q 031096 10 QVEKAKEDMLNQLYSSVGA------QSTARIEELLQEDQNVK 45 (166)
Q Consensus 10 qV~~AKe~Lln~Lys~Lyk------ke~~~LeeLL~ED~~v~ 45 (166)
+|+..++.++.-|..-+.+ ....+|.+||.==|.+.
T Consensus 168 ~v~~~q~~~~~aL~~~~~~~~~~~~~~~~Rf~~LL~~Lp~Lr 209 (245)
T d1xpca_ 168 HIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIR 209 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHH
Confidence 5556666666666555432 11235666665555543
No 16
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.12 E-value=64 Score=19.99 Aligned_cols=62 Identities=18% Similarity=0.304 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcc-----------------HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhh
Q 031096 4 EAVVLCQVEKAKEDMLNQLYSSVGAQS-----------------TARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQL 65 (166)
Q Consensus 4 KAIV~cqV~~AKe~Lln~Lys~Lykke-----------------~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qL 65 (166)
|=+.|..+++-.+.=+|..|.+|...= -+.|..|-.+...+.+.-+.+.+..+.|.....+|
T Consensus 2 rR~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 80 (83)
T d1nkpb_ 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346778888888888888887775421 13344555555555555555556666666555554
No 17
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=26.64 E-value=56 Score=20.94 Aligned_cols=39 Identities=8% Similarity=0.204 Sum_probs=25.7
Q ss_pred cHHHHHHHHhhCHHHHHH-HHHHHHHHHHHHHHHhhhhhh
Q 031096 30 STARIEELLQEDQNVKRR-RDRYQKQSELLSKLTRQLSIH 68 (166)
Q Consensus 30 e~~~LeeLL~ED~~v~~R-Re~c~K~LeLlkkAs~qLsih 68 (166)
..+.|.+|++++|.+... =+.+.+++..+.+-.++|+.|
T Consensus 100 ~~~~f~~l~~~~p~l~~~il~~~~~r~~~~~~~i~~l~~~ 139 (139)
T d3e5ua2 100 SEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEMNTY 139 (139)
T ss_dssp CHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred eHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 457899999999998653 234445556666666666544
No 18
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.40 E-value=69 Score=23.90 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhh---ccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 031096 10 QVEKAKEDMLNQLYSSVGA---QSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIH 68 (166)
Q Consensus 10 qV~~AKe~Lln~Lys~Lyk---ke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLsih 68 (166)
+|+...+.++.-|...+.. .....|..||.==+.+.+--.++.+.|..+|.....+.+|
T Consensus 195 ~Ve~lQ~~~~~aL~~y~~~~~p~~~~rfakLL~~L~~LR~ls~~~~e~L~~~k~~~~~~~l~ 256 (265)
T d2b50b1 195 RVEAIQDTILRALEFHLQANHPDAQQLFPKLLQKMADLRQLVTEHAQMMQRIKKTETETSLH 256 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 4555555555555544432 3455788888777777666566666777666654444333
No 19
>d2peqa1 a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synechococcus sp. pcc 7002 [TaxId: 32049]}
Probab=26.00 E-value=95 Score=21.30 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=17.8
Q ss_pred ccHHHHHHHHhhCHHHHHHHHHH
Q 031096 29 QSTARIEELLQEDQNVKRRRDRY 51 (166)
Q Consensus 29 ke~~~LeeLL~ED~~v~~RRe~c 51 (166)
..++-|++|+.|++.++.|--.+
T Consensus 51 DGd~~l~~L~~e~~~lA~RIm~v 73 (108)
T d2peqa1 51 ESDLYLEAMMLENKELVLRILTV 73 (108)
T ss_dssp SHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHhhCHHHHHHHHHH
Confidence 45678999999999987774433
No 20
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.11 E-value=74 Score=22.59 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhh---ccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031096 10 QVEKAKEDMLNQLYSSVGA---QSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLS 66 (166)
Q Consensus 10 qV~~AKe~Lln~Lys~Lyk---ke~~~LeeLL~ED~~v~~RRe~c~K~LeLlkkAs~qLs 66 (166)
+|+...+.+++-|+.-+.. .+..+|.+||.==|.+..--.++...+- +.+.....+
T Consensus 162 ~i~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LLl~Lp~Lr~i~~~~~e~l~-~~~~~~~~~ 220 (233)
T d1pzla_ 162 KIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQ-FIKLFGMAK 220 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSCCTTHHHHHHTHHHHHHHHHHHHHHHHH-HHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCCC
Confidence 5666666666666665443 3456788888877777655555555553 334444333
No 21
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=22.38 E-value=52 Score=21.05 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=22.9
Q ss_pred cHHHHHHHHhhCHHHHHH-HHHHHHHHHHHHHHHhhhhhh
Q 031096 30 STARIEELLQEDQNVKRR-RDRYQKQSELLSKLTRQLSIH 68 (166)
Q Consensus 30 e~~~LeeLL~ED~~v~~R-Re~c~K~LeLlkkAs~qLsih 68 (166)
..+.|.+||+++|.+... -..+.++|.-.....++|..|
T Consensus 93 ~~~~~~~ll~~~p~~~~~l~~~l~~rl~~~~~~i~~l~F~ 132 (132)
T d1ft9a2 93 DIRTFEQKLQTCPSMAWGLIAILGRALTSCMRTIEDLMFH 132 (132)
T ss_dssp CHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456899999999987543 333344444444444455444
No 22
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=21.75 E-value=25 Score=20.97 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhh
Q 031096 14 AKEDMLNQLYSSVGAQSTARIEELLQE 40 (166)
Q Consensus 14 AKe~Lln~Lys~Lykke~~~LeeLL~E 40 (166)
.|+.|+..++......-.+.+.+.++|
T Consensus 46 ~Ke~L~~~~~~~~~~~~~~~~~~~~~~ 72 (73)
T d1sgma1 46 GKEELAIEAVTYTGKIVEHLIQQSMDE 72 (73)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 377777777777776555555555443
No 23
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=21.57 E-value=25 Score=20.84 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHH
Q 031096 14 AKEDMLNQLYSSVGAQSTARIEELL 38 (166)
Q Consensus 14 AKe~Lln~Lys~Lykke~~~LeeLL 38 (166)
.|++|+..++..+...-.+.+.++|
T Consensus 48 ~k~~L~~~~~~~~~~~~~~~~~~~l 72 (75)
T d3c07a1 48 GKEHLIQGFYDRIAAEHRAAVREVL 72 (75)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777877777777664444444444
No 24
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=21.40 E-value=38 Score=19.97 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHH
Q 031096 14 AKEDMLNQLYSSVGAQSTARIEELL 38 (166)
Q Consensus 14 AKe~Lln~Lys~Lykke~~~LeeLL 38 (166)
.|++|+..++..+...-.+.+.+.|
T Consensus 44 ~K~~L~~~~~~~~~~~~~~~~~~~~ 68 (72)
T d1vi0a1 44 NKEDILISLFKEKMGQFIERMEEDI 68 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777666654333444333
No 25
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.26 E-value=1.3e+02 Score=21.19 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhCHH-HHHHHHHHHH
Q 031096 8 LCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQN-VKRRRDRYQK 53 (166)
Q Consensus 8 ~cqV~~AKe~Lln~Lys~Lykke~~~LeeLL~ED~~-v~~RRe~c~K 53 (166)
+-.++...+.|...+...|- .-|..++.+|.. |.+-|++..+
T Consensus 83 ~~~i~~~~~~l~~~~~~~~i----~PL~~~~~~d~k~i~~~kK~~~k 125 (248)
T d1y2oa1 83 HRQIQNQLEEMLKSFHNELL----TQLEQKVELDSRYLSAALKKYQT 125 (248)
T ss_dssp HHHHHHHHHHHHHHHHHTTH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555544444 478888888844 4444444433
No 26
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.14 E-value=40 Score=23.02 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=21.0
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 031096 31 TARIEELLQEDQNVKRRRDRYQKQSELLS 59 (166)
Q Consensus 31 ~~~LeeLL~ED~~v~~RRe~c~K~LeLlk 59 (166)
.+.|.+||..++.+.+.|.+..+.-+=|+
T Consensus 113 A~~l~~Ll~d~~~L~~eR~~a~~~r~k~~ 141 (144)
T d1eyha_ 113 AKQLVALLRDEDRLREERAHALKTKEKLA 141 (144)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 45788888888888888887776544343
No 27
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.65 E-value=39 Score=19.87 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=13.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhh
Q 031096 3 QEAVVLCQVEKAKEDMLNQLYSSVGA 28 (166)
Q Consensus 3 PKAIV~cqV~~AKe~Lln~Lys~Lyk 28 (166)
.+..+|.-.. .|++|+..++..+..
T Consensus 36 s~~t~Y~~F~-~K~~L~~~~~~~~~~ 60 (73)
T d1t56a1 36 SRPTFYFYFP-SKEAVLLTLLDRVVN 60 (73)
T ss_dssp CHHHHHHHCS-SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCc-CHHHHHHHHHHHHHH
Confidence 3444444433 466666666665554
No 28
>d3en8a1 d.17.4.20 (A:1-127) Uncharacterized protein BxeB2092 {Burkholderia xenovorans [TaxId: 36873]}
Probab=20.26 E-value=21 Score=23.10 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHhhC
Q 031096 12 EKAKEDMLNQLYSSVGAQSTARIEELLQED 41 (166)
Q Consensus 12 ~~AKe~Lln~Lys~Lykke~~~LeeLL~ED 41 (166)
++..+.+.+++|+-+....-+.+.+||.||
T Consensus 3 ~e~~~~~v~~~~~A~~~gD~da~~~l~adD 32 (127)
T d3en8a1 3 EEKIREALNAHWQASAAGDFDAEHDIYDDD 32 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHTTTEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHhcCC
Confidence 345567788888888887777888887776
Done!