Query 031097
Match_columns 166
No_of_seqs 112 out of 762
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:27:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_O 50S ribosomal protein L 100.0 1.6E-54 5.5E-59 333.5 11.9 120 47-166 1-122 (122)
2 1whi_A Ribosomal protein L14; 100.0 2.2E-54 7.7E-59 332.6 11.4 120 47-166 1-122 (122)
3 3r8s_K 50S ribosomal protein L 100.0 6.9E-54 2.4E-58 329.9 10.1 119 47-165 1-122 (122)
4 3bbo_M Ribosomal protein L14; 100.0 1.1E-53 3.6E-58 328.5 10.6 119 47-166 1-121 (121)
5 1vq8_K 50S ribosomal protein L 100.0 3E-50 1E-54 313.2 10.4 117 46-166 10-132 (132)
6 3j21_J 50S ribosomal protein L 100.0 1.1E-49 3.7E-54 312.9 9.3 118 45-166 18-141 (141)
7 3u5e_V L17A, YL32, 60S ribosom 100.0 4.3E-49 1.5E-53 308.3 10.2 117 46-166 15-137 (137)
8 2qqr_A JMJC domain-containing 37.2 62 0.0021 24.1 5.2 42 75-129 4-45 (118)
9 1xe1_A Hypothetical protein PF 37.0 65 0.0022 23.9 5.3 52 48-104 60-113 (116)
10 2ftc_K 39S ribosomal protein L 34.5 54 0.0019 23.7 4.4 31 78-111 5-35 (98)
11 3h9w_A Diguanylate cyclase wit 28.9 62 0.0021 20.4 3.6 29 111-139 70-98 (115)
12 3r87_A Putative uncharacterize 25.8 1.5E+02 0.0051 20.2 5.4 64 74-153 67-131 (135)
13 3v2d_T 50S ribosomal protein L 25.2 1.1E+02 0.0037 23.7 4.9 35 76-112 21-55 (146)
14 3r8s_P 50S ribosomal protein L 24.3 97 0.0033 22.9 4.3 35 76-112 18-52 (114)
15 1v74_A Colicin D; colicin D - 23.0 81 0.0028 23.3 3.6 30 113-142 59-90 (107)
16 2xdp_A Lysine-specific demethy 20.4 46 0.0016 25.0 1.8 41 76-129 6-46 (123)
No 1
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=100.00 E-value=1.6e-54 Score=333.45 Aligned_cols=120 Identities=57% Similarity=0.858 Sum_probs=117.6
Q ss_pred hhhcCceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCccccceEEEEEEEeeeeeccCCCCeeEeec
Q 031097 47 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD 124 (166)
Q Consensus 47 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~~~~kvKKg~V~kAvIVRtKk~~~R~dG~~ikFd 124 (166)
|||.+|+|+|+|||||+.++||+++++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlg~~~rr~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (122)
T 3v2d_O 1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFD 80 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEEESTTTCCCBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECTTSCEEEES
T ss_pred CCCCCCEEEEeeCCCCcEEEEEEEeCCCCCcccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCCCCcEEEcC
Confidence 999999999999999999999999987 679999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCccceEEeccchhhhhcCCCchheccccccC
Q 031097 125 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 166 (166)
Q Consensus 125 dNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~ii 166 (166)
|||+||+|++++|+|||||||||+|||+++|+||+|||++++
T Consensus 81 dNa~Vlin~~~~p~GTrI~GpVarElr~~~~~KI~SlA~~v~ 122 (122)
T 3v2d_O 81 DNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPEVL 122 (122)
T ss_dssp SCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHSSCBC
T ss_pred CcEEEEECCCCCEeeeEEEccchHHHhhCCCchhhccccccC
Confidence 999999999999999999999999999999999999999975
No 2
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=100.00 E-value=2.2e-54 Score=332.65 Aligned_cols=120 Identities=52% Similarity=0.793 Sum_probs=117.8
Q ss_pred hhhcCceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCccccceEEEEEEEeeeeeccCCCCeeEeec
Q 031097 47 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD 124 (166)
Q Consensus 47 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~~~~kvKKg~V~kAvIVRtKk~~~R~dG~~ikFd 124 (166)
|||.+|+|+|+|||||+.++||+++++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (122)
T 1whi_A 1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFD 80 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEECCS
T ss_pred CCCccCEEEEeECCCCcEEEEEEEcCCCcccccccCeEEEEEEEEecCCCccccccEEEEEEEEecCceecCCCCEEEeC
Confidence 999999999999999999999999997 789999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCccceEEeccchhhhhcCCCchheccccccC
Q 031097 125 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 166 (166)
Q Consensus 125 dNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~ii 166 (166)
|||+||+|++++|+|||||||||+|||+++|+||+|||++++
T Consensus 81 dNa~Vlin~~g~p~GTrI~GPVarElr~k~~~KI~SlA~~vl 122 (122)
T 1whi_A 81 ENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPEVI 122 (122)
T ss_dssp SCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHCSCBC
T ss_pred CceEEEECCCCCEeeeEEEccchHHHhhcCCcchhhcccccC
Confidence 999999999999999999999999999999999999999985
No 3
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=100.00 E-value=6.9e-54 Score=329.93 Aligned_cols=119 Identities=54% Similarity=0.844 Sum_probs=116.5
Q ss_pred hhhcCceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCccccceEEEEEEEeeeeeccCCCCeeEeec
Q 031097 47 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD 124 (166)
Q Consensus 47 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~~~~kvKKg~V~kAvIVRtKk~~~R~dG~~ikFd 124 (166)
|||.+|+|+|+|||||+.++||++|++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlgg~~r~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (122)
T 3r8s_K 1 MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFD 80 (122)
T ss_dssp CBCTTCEEEECBTTSEEEEEEEEECSSSSCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEEEES
T ss_pred CCCCCCEEEEccCCCCceEEEEEEeCCCCCCcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCCCCcEEEcC
Confidence 999999999999999999999999986 678999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCC-CCccceEEeccchhhhhcCCCchhecccccc
Q 031097 125 DNAVVLVNKA-GEPTGTRVFGPVPHELRRKKHVSILTLAEHL 165 (166)
Q Consensus 125 dNavVLln~k-~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i 165 (166)
|||+||+|++ ++|+|||||||||+|||+++|+||+|||+++
T Consensus 81 dNa~Vlin~~~g~p~GTrI~GpVarElR~~~~~KI~SlA~~v 122 (122)
T 3r8s_K 81 GNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEV 122 (122)
T ss_dssp SCEEEEEETTTEEESCSCBCSCCCGGGGSGGGHHHHHSSSCC
T ss_pred CceEEEEeCCCCCEeeeEEEccccHHHhHcCCchhhccccCC
Confidence 9999999999 9999999999999999999999999999985
No 4
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.1e-53 Score=328.53 Aligned_cols=119 Identities=45% Similarity=0.776 Sum_probs=116.7
Q ss_pred hhhcCceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCccccceEEEEEEEeeeeeccCCCCeeEeec
Q 031097 47 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD 124 (166)
Q Consensus 47 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~~~~kvKKg~V~kAvIVRtKk~~~R~dG~~ikFd 124 (166)
|||.+|+|+|+|||||+.++||+++++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~Vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (121)
T 3bbo_M 1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYD 80 (121)
T ss_dssp CCCSSCEEEECSSSSEEEEEEEEECSSSCCCCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECTTSCEECCS
T ss_pred CCCccCEEEEeeCCCCcEEEEEEEcCCCCccccccCcEEEEEEEEccCCCccccCcEEEEEEEEecCccccCCCCEEEeC
Confidence 999999999999999999999999997 689999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCccceEEeccchhhhhcCCCchheccccccC
Q 031097 125 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 166 (166)
Q Consensus 125 dNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~ii 166 (166)
|||+||+|++++|+|||||||||+|||+ +|+||+|||++++
T Consensus 81 dNa~Vlin~~g~p~GTrI~GPVarElr~-~~~KI~SlA~~vl 121 (121)
T 3bbo_M 81 DNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPEVL 121 (121)
T ss_dssp SCEEEECCTTSSCSSSCCCSCCCGGGTT-TCHHHHHHSSCCC
T ss_pred CceEEEECCCCCEeEeEEEcCcCHHHHh-cchHhhhccchhC
Confidence 9999999999999999999999999999 8999999999985
No 5
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=100.00 E-value=3e-50 Score=313.21 Aligned_cols=117 Identities=33% Similarity=0.549 Sum_probs=112.1
Q ss_pred hhhhcCceEEEeeCcCcceEEEEEeeC--C--ccc--cccCcEEEEEEeeecCCCccccceEEEEEEEeeeeeccCCCCe
Q 031097 46 TFIQMRTVLKVVDNSGAKTVMCIQPLK--G--RKV--ARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGS 119 (166)
Q Consensus 46 ~MIq~~T~L~VaDNSGak~v~cI~vl~--~--~k~--a~vGD~I~vsVKk~~~~~kvKKg~V~kAvIVRtKk~~~R~dG~ 119 (166)
.|||.+|+|+|+|||||+.++||++++ + +++ |++||+|++|||++.|+. |||+++|||||||++++|+||+
T Consensus 10 ~mIq~~t~l~vaDNSGAk~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p~~---kg~v~~AVIVRtkk~~rR~dG~ 86 (132)
T 1vq8_K 10 QGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEM---RRQVLEAVVVRQRKPIRRPDGT 86 (132)
T ss_dssp CCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTSC
T ss_pred cccccCCEEEEeeCCCCcEEEEEEEeCccCcccccCCCccCcEEEEEEEecCCCC---CCcEEEEEEEEcCCCcCcCCCc
Confidence 499999999999999999999999998 4 456 999999999999999987 6999999999999999999999
Q ss_pred eEeecCceEEEEcCCCCccceEEeccchhhhhcCCCchheccccccC
Q 031097 120 EVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 166 (166)
Q Consensus 120 ~ikFddNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~ii 166 (166)
+++|||||+||+|++++|+|||||||||+|||+ +|+||+|||++++
T Consensus 87 ~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~-~~~KI~SlA~~v~ 132 (132)
T 1vq8_K 87 RVKFEDNAAVIVDENEDPRGTELKGPIAREVAQ-RFGSVASAATMIV 132 (132)
T ss_dssp EEEESSCEEEEECTTSCBSSSCBCSEECHHHHH-HSHHHHTTCSEEC
T ss_pred EEEeCCceEEEECCCCCEeEEEEEcCcCHHHHh-cccHhhhcccccC
Confidence 999999999999999999999999999999999 7999999999875
No 6
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-49 Score=312.93 Aligned_cols=118 Identities=39% Similarity=0.610 Sum_probs=111.8
Q ss_pred hhhhhcCceEEEeeCcCcceEEEEEeeC--C--cc--ccccCcEEEEEEeeecCCCccccceEEEEEEEeeeeeccCCCC
Q 031097 45 RTFIQMRTVLKVVDNSGAKTVMCIQPLK--G--RK--VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDG 118 (166)
Q Consensus 45 ~~MIq~~T~L~VaDNSGak~v~cI~vl~--~--~k--~a~vGD~I~vsVKk~~~~~kvKKg~V~kAvIVRtKk~~~R~dG 118 (166)
-.|||.+|+|+|+|||||+.++||++++ + ++ +|.+||+|++|||++.|+. |||+++|||||||++++|+||
T Consensus 18 ~~mIq~~t~L~VaDNSGAk~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p~~---kg~V~kAVIVRtkk~~rR~dG 94 (141)
T 3j21_J 18 TRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDM---RHQVVRAVIIRQRKEYRRLDG 94 (141)
T ss_dssp CCCBCTTCEEEECSSSSEEEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTS
T ss_pred cceeccCCEEEEccCCCCcEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCCCC---cCceEEEEEEEeCCccCCCCC
Confidence 4599999999999999999999999997 3 23 5999999999999999998 599999999999999999999
Q ss_pred eeEeecCceEEEEcCCCCccceEEeccchhhhhcCCCchheccccccC
Q 031097 119 SEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 166 (166)
Q Consensus 119 ~~ikFddNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~ii 166 (166)
++++|||||+||+|++++|+|||||||||+|||+ +|+||+|||+++|
T Consensus 95 s~i~FddNA~VLin~~g~p~GTRI~GPVarElr~-~~~KI~SlA~~iv 141 (141)
T 3j21_J 95 MRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAE-RWVRIGSIASIIV 141 (141)
T ss_dssp CEECCSSCEEEEBCTTSCBCSSCCCSEECHHHHH-HCHHHHHHCSEEC
T ss_pred cEEEcCCcEEEEECCCCCEeeeEEEccccHHHHh-hchHHhhcccccC
Confidence 9999999999999999999999999999999999 5999999999986
No 7
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=100.00 E-value=4.3e-49 Score=308.33 Aligned_cols=117 Identities=32% Similarity=0.439 Sum_probs=111.4
Q ss_pred hhhhcCceEEEeeCcCcceEEEEEeeCC--c----cccccCcEEEEEEeeecCCCccccceEEEEEEEeeeeeccCCCCe
Q 031097 46 TFIQMRTVLKVVDNSGAKTVMCIQPLKG--R----KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGS 119 (166)
Q Consensus 46 ~MIq~~T~L~VaDNSGak~v~cI~vl~~--~----k~a~vGD~I~vsVKk~~~~~kvKKg~V~kAvIVRtKk~~~R~dG~ 119 (166)
.+||.+|+|+|+|||||+.++||+++++ + ++|.+||+|++|||++.|+. |||+++|||||||++++|+||+
T Consensus 15 ~gl~~~t~L~VaDNSGAk~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~p~~---k~~V~~AVIVRtkk~~rR~dG~ 91 (137)
T 3u5e_V 15 LGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPEL---RKKVMPAIVVRQAKSWRRRDGV 91 (137)
T ss_dssp CCEETTCEEEECBSSSBCEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBCTTT---TTSCEEEEEEECCSCEECTTSC
T ss_pred ccccCCCEEEEeeCCCCcEEEEEEEeCCCCcccccccCCcCCEEEEEEEECCCCC---CCcEEEEEEEEeccccCcCCCe
Confidence 3789999999999999999999999985 2 48999999999999999998 5899999999999999999999
Q ss_pred eEeecCceEEEEcCCCCccceEEeccchhhhhcCCCchheccccccC
Q 031097 120 EVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 166 (166)
Q Consensus 120 ~ikFddNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~ii 166 (166)
+++|||||+||+|++++|+|||||||||+|||++ |+||+|||++++
T Consensus 92 ~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~-~~KI~SlA~~vv 137 (137)
T 3u5e_V 92 FLYFEDNAGVIANPKGEMKGSAITGPVGKECADL-WPRVASNSGVVV 137 (137)
T ss_dssp EEEESSCEEEEBCTTCCBSSSCBCSCBCHHHHTT-CHHHHHTCSSBC
T ss_pred EEEcCCceEEEECCCCCEeeeEEEcchhHHHHHH-hhHHHhcccccC
Confidence 9999999999999999999999999999999997 999999999986
No 8
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=37.18 E-value=62 Score=24.06 Aligned_cols=42 Identities=26% Similarity=0.414 Sum_probs=29.5
Q ss_pred cccccCcEEEEEEeeecCCCccccceEEEEEEEeeeeeccCCCCeeEeecCceEE
Q 031097 75 KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVV 129 (166)
Q Consensus 75 k~a~vGD~I~vsVKk~~~~~kvKKg~V~kAvIVRtKk~~~R~dG~~ikFddNavV 129 (166)
+..++||.|.+ | .+ -|.-++|.|++.+.+. ...+.|+||+.-
T Consensus 4 ~~v~vGq~V~a--k---h~----ngryy~~~V~~~~~~~----~y~V~F~DgS~s 45 (118)
T 2qqr_A 4 QSITAGQKVIS--K---HK----NGRFYQCEVVRLTTET----FYEVNFDDGSFS 45 (118)
T ss_dssp SCCCTTCEEEE--E---CT----TSSEEEEEEEEEEEEE----EEEEEETTSCEE
T ss_pred ceeccCCEEEE--E---CC----CCCEEeEEEEEEeeEE----EEEEEcCCCCcc
Confidence 34578998874 2 11 3677888899987753 357899998864
No 9
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=37.04 E-value=65 Score=23.89 Aligned_cols=52 Identities=27% Similarity=0.342 Sum_probs=35.7
Q ss_pred hhcCceEEEeeCc-CcceEEEEEeeCC-ccccccCcEEEEEEeeecCCCccccceEEEE
Q 031097 48 IQMRTVLKVVDNS-GAKTVMCIQPLKG-RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 104 (166)
Q Consensus 48 Iq~~T~L~VaDNS-Gak~v~cI~vl~~-~k~a~vGD~I~vsVKk~~~~~kvKKg~V~kA 104 (166)
|..++.| |+- -.-.++-|..-.. -..|..||-|-++|+.... .++.|++.+.
T Consensus 60 LK~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~--~I~~GdVLyv 113 (116)
T 1xe1_A 60 IGVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIG--KVKKGDVLEI 113 (116)
T ss_dssp EETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCCC--CCCTTCEEEE
T ss_pred EcCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc--ccCCCcEEEE
Confidence 5677777 544 2444566654221 3579999999999997655 6888988764
No 10
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=34.54 E-value=54 Score=23.66 Aligned_cols=31 Identities=6% Similarity=0.109 Sum_probs=23.4
Q ss_pred ccCcEEEEEEeeecCCCccccceEEEEEEEeeee
Q 031097 78 RLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAM 111 (166)
Q Consensus 78 ~vGD~I~vsVKk~~~~~kvKKg~V~kAvIVRtKk 111 (166)
.+||+|.|.++-. ..+ ++=|.+.++++..+.
T Consensus 5 ~~GDtv~V~~~i~--g~k-~R~q~F~GvvI~~~~ 35 (98)
T 2ftc_K 5 YVGSILRVTTADP--YAS-GKISQFLGICIQRSG 35 (98)
T ss_pred CCCCEEEEEEEEC--CCc-eEeeeEEEEEEEEEC
Confidence 5899999999755 222 345899999998664
No 11
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=28.88 E-value=62 Score=20.43 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=23.0
Q ss_pred eeccCCCCeeEeecCceEEEEcCCCCccc
Q 031097 111 MQHGRFDGSEVRFDDNAVVLVNKAGEPTG 139 (166)
Q Consensus 111 k~~~R~dG~~ikFddNavVLln~k~~plG 139 (166)
..+.++||...-+...+.++.+.+|+|.+
T Consensus 70 ~r~~~~dG~~~w~~~~~~~~~d~~G~~~~ 98 (115)
T 3h9w_A 70 YRALHRDGHYVWIRDVVHVVRDDSGEVEA 98 (115)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTSCEEE
T ss_pred EEEEcCCCCEEEEEEEEEEEECCCCCEEE
Confidence 34567899988888888888888888753
No 12
>3r87_A Putative uncharacterized protein; unknown function; 1.05A {Photobacterium profundum}
Probab=25.76 E-value=1.5e+02 Score=20.16 Aligned_cols=64 Identities=11% Similarity=0.083 Sum_probs=35.1
Q ss_pred ccccccCcEEEEEEeeecCCCccccceEEEEEEEeeeeeccCC-CCeeEeecCceEEEEcCCCCccceEEeccchhhhhc
Q 031097 74 RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRF-DGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRR 152 (166)
Q Consensus 74 ~k~a~vGD~I~vsVKk~~~~~kvKKg~V~kAvIVRtKk~~~R~-dG~~ikFddNavVLln~k~~plGTRI~GpV~~Elr~ 152 (166)
++.+..||.|.+...-..-.. ..+. ..+.+.+. ||..+---+-..|.+|.++.|. |+|.|+++
T Consensus 67 ~~p~~~gd~v~v~t~v~~~~~----~s~~------~~~~i~~~~~g~~~a~~~~~~v~vd~~~r~~------~iP~~~~~ 130 (135)
T 3r87_A 67 QDGVEFAEICDIRTSFTLDGK----YKTL------WRQEVWRPGASRAAVIGDIEMVCLDKEKRLQ------PVPADILA 130 (135)
T ss_dssp CSCCCTTCEEEEEEEEEEETT----TEEE------EEEEEECTTCSSCSEEEEEEEEEECTTCCEE------CCCHHHHH
T ss_pred CCcccCCCEEEEEEEEEEeCC----EEEE------EEEEEEECCCCEEEEEEEEEEEEECCCCCEe------cCCHHHHH
Confidence 467889999988875332221 1211 11222233 5543333334456777655444 88999886
Q ss_pred C
Q 031097 153 K 153 (166)
Q Consensus 153 k 153 (166)
.
T Consensus 131 ~ 131 (135)
T 3r87_A 131 S 131 (135)
T ss_dssp H
T ss_pred H
Confidence 4
No 13
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=25.23 E-value=1.1e+02 Score=23.73 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=24.5
Q ss_pred ccccCcEEEEEEeeecCCCccccceEEEEEEEeeeee
Q 031097 76 VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQ 112 (166)
Q Consensus 76 ~a~vGD~I~vsVKk~~~~~kvKKg~V~kAvIVRtKk~ 112 (166)
.-.+||+|.|.++-...+ -.+=|.+.++|+..+..
T Consensus 21 ~F~~GDtV~V~~~i~EG~--keRiQ~FeGvVI~rr~~ 55 (146)
T 3v2d_T 21 EFRPGDTVRVSYKVKEGN--RTRIQDFEGIVIRIRRN 55 (146)
T ss_dssp CCCTTCEEEEEEEEECSS--CEEEEEEEEEEEEEECC
T ss_pred CcCCCCEEEEEEEEccCC--ceeeeeEEEEEEEEECC
Confidence 457999999999853221 12347899999987653
No 14
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=24.34 E-value=97 Score=22.94 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=24.2
Q ss_pred ccccCcEEEEEEeeecCCCccccceEEEEEEEeeeee
Q 031097 76 VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQ 112 (166)
Q Consensus 76 ~a~vGD~I~vsVKk~~~~~kvKKg~V~kAvIVRtKk~ 112 (166)
.-.+||+|.|.++-...+. .+=|.+.++++..+..
T Consensus 18 ~f~~GDtv~V~~~i~EG~k--eRiQ~F~GvvI~~~~~ 52 (114)
T 3r8s_P 18 SFRPGDTVEVKVWVVEGSK--KRLQAFEGVVIAIRNR 52 (114)
T ss_dssp CCCTTCEEEEEEEEEETTE--EEEEEEEEEEEEEECC
T ss_pred ccCCCCEEEEEEEEecCCc--eeeeeEEEEEEEEECC
Confidence 4579999999987432211 2347899999987653
No 15
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=22.97 E-value=81 Score=23.29 Aligned_cols=30 Identities=30% Similarity=0.344 Sum_probs=23.4
Q ss_pred ccCCCCeeEee--cCceEEEEcCCCCccceEE
Q 031097 113 HGRFDGSEVRF--DDNAVVLVNKAGEPTGTRV 142 (166)
Q Consensus 113 ~~R~dG~~ikF--ddNavVLln~k~~plGTRI 142 (166)
+++..++.+.| ..|-+|+++.+++-++-=.
T Consensus 59 YR~~~dskVy~N~~T~~~Viid~~g~FvsGwK 90 (107)
T 1v74_A 59 YRREKGSKVYFNPNTMNVVIIKSNGEFLSGWK 90 (107)
T ss_dssp CTTSTTCEEEECTTTCEEEEECTTSCEEEEEE
T ss_pred eecCCCcEEEEeCCCCeEEEEcCCCCEEEEEE
Confidence 45656899999 7899999999998755433
No 16
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=20.36 E-value=46 Score=24.96 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=27.2
Q ss_pred ccccCcEEEEEEeeecCCCccccceEEEEEEEeeeeeccCCCCeeEeecCceEE
Q 031097 76 VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVV 129 (166)
Q Consensus 76 ~a~vGD~I~vsVKk~~~~~kvKKg~V~kAvIVRtKk~~~R~dG~~ikFddNavV 129 (166)
..++||.|.+ | .+ -|.-++|.|++.+... ...+.|+||+.-
T Consensus 6 ~v~vGq~V~a--k---~~----ngryy~~~V~~~~~~~----~y~V~F~DgS~s 46 (123)
T 2xdp_A 6 VISVGQTVIT--K---HR----NTRYYSCRVMAVTSQT----FYEVMFDDGSFS 46 (123)
T ss_dssp CCCTTCCCCC--C---CC----CCCCCCCEEEEEEEEE----EEEEEETTSCEE
T ss_pred ccccCCEEEE--E---CC----CCcEEeEEEEEEeeEE----EEEEEcCCCCcc
Confidence 4568887751 1 11 2667777778877643 357899999876
Done!