RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 031097
(166 letters)
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus
thermophilus [TaxId: 274]}
Length = 122
Score = 152 bits (386), Expect = 4e-49
Identities = 68/117 (58%), Positives = 84/117 (71%), Gaps = 2/117 (1%)
Query: 48 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 105
IQ +T L+V DN+GA+ +MCI+ LKG K A +GD IVASVKEA+P G VK+G VV AV
Sbjct: 2 IQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAV 61
Query: 106 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 162
VVR + R DGS +RFDDNA V++N EP GTRVFGPV ELR K + I++LA
Sbjct: 62 VVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLA 118
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 122
Score = 142 bits (360), Expect = 4e-45
Identities = 62/117 (52%), Positives = 79/117 (67%), Gaps = 2/117 (1%)
Query: 48 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 105
IQ + LKV DNSGA+ V+ I+ L G R+ A +GD +VA+VK+A P G VKKGQVV AV
Sbjct: 2 IQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAV 61
Query: 106 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 162
VVR R DGS +RFD+NA V++ P GTR+FGPV ELR K + I++LA
Sbjct: 62 VVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLA 118
>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli
[TaxId: 562]}
Length = 121
Score = 142 bits (359), Expect = 5e-45
Identities = 64/118 (54%), Positives = 81/118 (68%), Gaps = 3/118 (2%)
Query: 48 IQMRTVLKVVDNSGAKTVMCIQPLKGR--KVARLGDTIVASVKEAMPTGKVKKGQVVHAV 105
IQ +T+L V DNSGA+ VMCI+ L G + A +GD I ++KEA+P GKVKKG V+ AV
Sbjct: 1 IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAV 60
Query: 106 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLA 162
VVR R DGS +RFD NA VL+N E P GTR+FGPV ELR +K + I++LA
Sbjct: 61 VVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLA 118
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 132
Score = 132 bits (335), Expect = 3e-41
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 48 IQMRTVLKVVDNSGAKTVMCIQPLKG------RKVARLGDTIVASVKEAMPTGKVKKGQV 101
++ +++ DN+GA+ + I A LGD I SV + P + QV
Sbjct: 12 LEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTP---EMRRQV 68
Query: 102 VHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTL 161
+ AVVVR R DG+ V+F+DNA V+V++ +P GT + GP+ E+ ++ S+ +
Sbjct: 69 LEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREV-AQRFGSVASA 127
Query: 162 A 162
A
Sbjct: 128 A 128
>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 248
Score = 29.9 bits (65), Expect = 0.11
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 67 CIQ-PLKGRKVARLGDTIVA 85
CIQ P +G+KV +GD+I
Sbjct: 1 CIQHPWQGKKVGYIGDSITD 20
>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose
pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 292
Score = 26.2 bits (57), Expect = 2.1
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 90 AMPTGKVKKGQVVHAVVVR-AAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPH 148
A+P G V G+ + A + R + ++K ++
Sbjct: 153 AIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVD 212
Query: 149 ELRRKKHVSILTLA 162
+ R + + T A
Sbjct: 213 DPRNTDNAWMETEA 226
>d1rj6a_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme XIV [TaxId: 10090]}
Length = 259
Score = 25.2 bits (54), Expect = 4.1
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 40 LSQQQRTFIQMRTVLKVVDNSGAKTVMC----IQPLKGRKV 76
+S Q +++ L + ++ ++ QPL R +
Sbjct: 217 ISMGQ--LEKLQETLSSTEEDPSEPLVQNYRVPQPLNQRTI 255
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea
ramigera [TaxId: 350]}
Length = 124
Score = 24.1 bits (52), Expect = 5.7
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 104 AVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKK 154
A A + +D S V + A+ + + G +G R+ + E++R+
Sbjct: 52 AAQACAVNKDLGWDPSIVNVNGGAIAIGHPIG-ASGARILNTLLFEMKRRG 101
>d1c8ba_ c.56.1.2 (A:) Germination protease {Bacillus megaterium
[TaxId: 1404]}
Length = 371
Score = 24.8 bits (54), Expect = 6.9
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 56 VVDNSGAKTVMCIQPLKGRKVARLGDTI 83
VV ++ I L R + R+ TI
Sbjct: 181 VVKKVNPDFIIAIDALAARSIERVNATI 208
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 124
Score = 23.7 bits (51), Expect = 8.7
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 104 AVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKK 154
A + D ++V A+ L + G TG R + EL++ +
Sbjct: 54 AAQALYCIHKLGIDLNKVNPRGGAIALGHPLG-CTGARQVATILRELKKDQ 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.368
Gapped
Lambda K H
0.267 0.0349 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 555,956
Number of extensions: 23068
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 15
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.7 bits)