BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031098
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KWW|A Chain A, Crystal Structure Of The 'restriction Triad' Mutant Of Hla
B Beta-2-Microglobulin And Ebv Peptide
pdb|3KXF|A Chain A, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|C Chain C, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|K Chain K, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|I Chain I, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
Length = 276
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R ++I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTAIFKANTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|3VFM|A Chain A, Crystal Structure Of Hla B3508 Lpep155a, Hla Mutant Ala155
Length = 276
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1CG9|A Chain A, Complex Recognition Of The Supertypic Bw6-Determinant On
Hla-B And-C Molecules By The Monoclonal Antibody Sfr8-B6
Length = 277
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1XH3|A Chain A, Conformational Restraints And Flexibility Of 14-Meric
Peptides In Complex With Hla-B3501
pdb|1ZHK|A Chain A, Crystal Structure Of Hla-B3501 Presenting 13-Mer Ebv
Antigen Lpeplpqgqltay
pdb|1ZSD|A Chain A, Crystal Structure Of Hla-B3501 Presenting An 11-Mer Ebv
Antigen Eplpqgqltay
pdb|2AXG|A Chain A, The Immunogenicity Of A Viral Cytotoxic T Cell Epitope Is
Controlled By Its Mhc-Bound Conformation
pdb|2H6P|A Chain A, Crystal Structure Of Hla-B3501 Presenting The Human
Cytochrome P450 Derived Peptide, Kpivvlhgy
pdb|2CIK|A Chain A, Insights Into Crossreactivity In Human Allorecognition:
The Structure Of Hla-B35011 Presenting An Epitope
Derived From Cytochrome P450.
pdb|2FYY|A Chain A, The Role Of T Cell Receptor Alpha Genes In Directing Human
Mhc Restriction
pdb|2NX5|A Chain A, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|F Chain F, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|K Chain K, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|Q Chain Q, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|3MV7|A Chain A, Crystal Structure Of The Tk3 Tcr In Complex With
Hla-B3501HPVG
pdb|3MV8|A Chain A, Crystal Structure Of The Tk3-Gln55his Tcr In Complex With
Hla- B3501HPVG
pdb|3MV9|A Chain A, Crystal Structure Of The Tk3-Gln55ala Tcr In Complex With
Hla- B3501HPVG
pdb|3LKN|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1918 Strain
pdb|3LKO|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1934 Strain
pdb|3LKP|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1972 Strain
pdb|3LKQ|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1977 Strain
pdb|3LKR|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 2009 H1n1 Swine Origin Strain
pdb|3LKS|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1980 Strain
Length = 276
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1A9B|A Chain A, Decamer-Like Conformation Of A Nano-Peptide Bound To Hla-
B3501 Due To Nonstandard Positioning Of The C-Terminus
pdb|1A9B|D Chain D, Decamer-Like Conformation Of A Nano-Peptide Bound To Hla-
B3501 Due To Nonstandard Positioning Of The C-Terminus
pdb|1A9E|A Chain A, Decamer-Like Conformation Of A Nano-Peptide Bound To Hla-
B3501 Due To Nonstandard Positioning Of The C-Terminus
Length = 277
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|3VFO|A Chain A, Crystal Structure Of Hla B3508 Lpep157a, Hla Mutant Ala157
Length = 276
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|3VFN|A Chain A, Crystal Structure Of Hla B3508lpep151a, Hla Mutant Ala151
Length = 276
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1A1N|A Chain A, Mhc Class I Molecule B3501 Complexed With Peptide Vplrpmty
From The Nef Protein (75-82) Of Hiv1
Length = 276
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1ZHL|A Chain A, Crystal Structure Of Hla-B3508 Presenting 13-Mer Ebv
Antigen Lpeplpqgqltay
pdb|2AK4|A Chain A, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|F Chain F, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|K Chain K, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|Q Chain Q, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AXF|A Chain A, The Immunogenicity Of A Viral Cytotoxic T Cell Epitope Is
Controlled By Its Mhc-Bound Conformation
pdb|2FZ3|A Chain A, The Role Of T Cell Receptor Alpha Genes In Directing Human
Mhc Restriction
pdb|2NW3|A Chain A, Crystal Structure Of Hla-B3508 Presenting Ebv Peptide
Eplpqgqltay At 1.7a
pdb|3BW9|A Chain A, Crystal Structure Of Hla B3508 In Complex With A Hcmv 12-
Mer Peptide From The Pp65 Protein
pdb|3BWA|A Chain A, Crystal Structure Of Hla B3508 In Complex With A Hcmv 8-
Mer Peptide From The Pp65 Protein
pdb|3VFS|A Chain A, Crystal Structure Of Hla B3508lpep-P5ala , Peptide Mutant
P5-Ala
pdb|3VFT|A Chain A, Crystal Structure Of Hla B3508lpep-P6ala, Peptide Mutant
P6-Ala
pdb|3VFU|A Chain A, Crystal Structure Of Hla B3508 Lpep-P7ala, Peptide Mutant
P7-Ala
pdb|3VFV|A Chain A, Crystal Structure Of Hla B3508 Lpep-P9ala, Peptide Mutant
P9-Ala
pdb|3VFW|A Chain A, Crystal Structure Of Hla B3508 Lpep-P10ala, Peptide Mutant
P10-Ala
pdb|3VFR|A Chain A, Crystal Structure Of Hla B3508lpep-P4ala, Peptide Mutant
P4-Ala
Length = 276
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|B Chain B, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|C Chain C, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|D Chain D, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
Length = 450
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 101 GLDWLPIREDVAEQLEIAYRSQVWHRRTFNLLDFLQ-LELTCKALLQY---IYFLVK--- 153
G +P+ E +AEQL++ Q WH + L++F L L +L ++ I L++
Sbjct: 203 GSKAMPVAEALAEQLKLTLPEQPWHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEA 262
Query: 154 WEISVPSIPN 163
E+ PS P
Sbjct: 263 GEVFEPSAPG 272
>pdb|3VFP|A Chain A, Crystal Structure Of Hla B3508 Lpep158g, Hla Mutant Gly158
Length = 276
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRESLRNLRGYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1A1O|A Chain A, Mhc Class I Molecule B5301 Complexed With Peptide Ls6
(Kpivqydnf) From The Malaria Parasite P. Falciparum
Length = 276
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + E++R A Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRENLRIALRYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1A1M|A Chain A, Mhc Class I Molecule B5301 Complexed With Peptide
Tpydinqml From Gag Protein Of Hiv2
Length = 278
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + E++R A Y + E G + +Y DL
Sbjct: 55 EGPEYWDRNTQIFKTNTQ-TYRENLRIALRYYNQSE-AGSHIIQRMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1XR8|A Chain A, Crystal Structures Of Hla-B1501 In Complex With Peptides
From Human Ubch6 And Epstein-Barr Virus Ebna-3
pdb|1XR9|A Chain A, Crystal Structures Of Hla-B1501 In Complex With Peptides
From Human Ubch6 And Epstein-Barr Virus Ebna-3
pdb|3C9N|A Chain A, Crystal Structure Of A Sars Corona Virus Derived Peptide
Bound To The Human Major Histocompatibility Complex
Class I Molecule Hla-B1501
Length = 276
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G +Y D+
Sbjct: 55 EGPEYWDRETQISKTNTQ-TYRESLRNLRGYYNQSE-AGSHTLQRMYGCDV--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH + G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1K8D|A Chain A, Crystal Structure Of The Non-Classical Mhc Class Ib Qa-2
Complexed With A Self Peptide
Length = 274
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 20/131 (15%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP ER + I K Q S S+R+A+ Y + + G +Y D+
Sbjct: 55 EGPEYWERETQIAKGHEQ-SFRGSLRTAQSY-YNQSKGGSHTLQWMYGCDM--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQV----WHRRTFNLLDFLQLE 138
G + R+LRG+ G D++ + ED+ + +Q+ W + D LE
Sbjct: 104 --GSDGRLLRGYLQFAYEGRDYIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLE 161
Query: 139 LTC-KALLQYI 148
TC ++L +Y+
Sbjct: 162 GTCMQSLRRYL 172
>pdb|3LN5|A Chain A, Crystal Structure Of Hla-B4104 In Complex With A 11mer
Self-Peptide Derived From S-Methyl-5-Thioadenosine
Phosphorylase
Length = 274
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G +Y DL
Sbjct: 55 EGPEYWDRETQISKTNTQ-TYRESLRNLRGYYNQSE-AGSHTLQSMYGCDL--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH G D++ + ED+ +Q+ R+
Sbjct: 104 --GPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRK 146
>pdb|3IL2|A Chain A, Crystal Structure Of A Rex-Family Repressor R90d MutantDNA
COMPLEX From Thermus Aquaticus
pdb|3IL2|B Chain B, Crystal Structure Of A Rex-Family Repressor R90d MutantDNA
COMPLEX From Thermus Aquaticus
Length = 207
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 5 LLQREEELLSNWWKEYAECSEGPRERASSIKKSDVQASLTESVRSAELYEVEEERVGVPV 64
+L+RE + +++ C G + S++ ES ++V+ E+VG PV
Sbjct: 67 VLKRELRHILGLNRKWGLCIVGXGDLGSALAD---YPGFGESFELRGFFDVDPEKVGRPV 123
Query: 65 KGGLYE-VDLV 74
+GG+ E VDL+
Sbjct: 124 RGGVIEHVDLL 134
>pdb|3IKV|A Chain A, Crystal Structure Of A Rex-Family Repressor R90d Mutant
From Aquaticus
pdb|3IKV|B Chain B, Crystal Structure Of A Rex-Family Repressor R90d Mutant
From Aquaticus
Length = 207
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 5 LLQREEELLSNWWKEYAECSEGPRERASSIKKSDVQASLTESVRSAELYEVEEERVGVPV 64
+L+RE + +++ C G + S++ ES ++V+ E+VG PV
Sbjct: 67 VLKRELRHILGLNRKWGLCIVGMGDLGSALAD---YPGFGESFELRGFFDVDPEKVGRPV 123
Query: 65 KGGLYE-VDLV 74
+GG+ E VDL+
Sbjct: 124 RGGVIEHVDLL 134
>pdb|1M6O|A Chain A, Crystal Structure Of Hla B4402 In Complex With Hla Dpa0201
Peptide
pdb|3DX6|A Chain A, Crystal Structure Of B4402 Presenting A 10mer Ebv Epitope
pdb|3KPL|A Chain A, Crystal Structure Of Hla B4402 In Complex With Eeylqafty A
Self Peptide From The Abcd3 Protein
pdb|3KPM|A Chain A, Crystal Structure Of Hla B4402 In Complex With Eeylkawtf,
A Mimotope
pdb|3L3D|A Chain A, Crystal Structure Of Hla-B4402 In Complex With The F3a
Mutant Of A Self-Peptide Derived From Dpa0201
pdb|3L3G|A Chain A, Crystal Structure Of Hla-B4402 In Complex With The R5a
Mutant Of A Self-Peptide Derived From Dpa0201
pdb|3L3I|A Chain A, Crystal Structure Of Hla-B4402 In Complex With The F7a
Mutant Of A Self-Peptide Derived From Dpa0201
pdb|3L3J|A Chain A, Crystal Structure Of Hla-B4402 In Complex With The F3aR5A
DOUBLE Mutant Of A Self-Peptide Derived From Dpa0201
pdb|3L3K|A Chain A, Crystal Structure Of Hla-b*4402 In Complex With The
R5a/f7a Double Mutant Of A Self-peptide Derived From
Dpa*0201
Length = 276
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + E++R+A Y + E G + +Y D+
Sbjct: 55 EGPEYWDRETQISKTNTQ-TYRENLRTALRYYNQSE-AGSHIIQRMYGCDV--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRG+ G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGYDQDAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|3IKT|A Chain A, Crystal Structure Of A Rex-Family RepressorDNANAD+ COMPLEX
Thermus Aquaticus
pdb|3IKT|B Chain B, Crystal Structure Of A Rex-Family RepressorDNANAD+ COMPLEX
Thermus Aquaticus
Length = 207
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 5 LLQREEELLSNWWKEYAECSEGPRERASSIKKSDVQASLTESVRSAELYEVEEERVGVPV 64
+L+RE + +++ C G S++ ES ++V+ E+VG PV
Sbjct: 67 VLKRELRHILGLNRKWGLCIVGMGRLGSALAD---YPGFGESFELRGFFDVDPEKVGRPV 123
Query: 65 KGGLYE-VDLV 74
+GG+ E VDL+
Sbjct: 124 RGGVIEHVDLL 134
>pdb|1N2R|A Chain A, A Natural Selected Dimorphism In Hla B44 Alters Self,
Peptide Reportoire And T Cell Recognition.
pdb|1SYS|A Chain A, Crystal Structure Of Hla, B4403, And Peptide Eeptvikky
pdb|3DX7|A Chain A, Crystal Structure Of Hla-B4403 Presenting 10mer Ebv
Antigen
pdb|3KPN|A Chain A, Crystal Structure Of Hla B4403 In Complex With Eeylqafty A
Self Peptide From The Abcd3 Protein
pdb|3KPO|A Chain A, Crystal Structure Of Hla B*4403 In Complex With Eeylkawtf,
A Mimotope
Length = 276
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + E++R+A Y + E G + +Y D+
Sbjct: 55 EGPEYWDRETQISKTNTQ-TYRENLRTALRYYNQSE-AGSHIIQRMYGCDV--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRG+ G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGYDQDAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|2DT5|A Chain A, Crystal Structure Of Ttha1657 (At-Rich Dna-Binding
Protein) From Thermus Thermophilus Hb8
pdb|2DT5|B Chain B, Crystal Structure Of Ttha1657 (At-Rich Dna-Binding
Protein) From Thermus Thermophilus Hb8
Length = 211
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 5 LLQREEELLSNWWKEYAECSEGPRERASSIKKSDVQASLTESVRSAELYEVEEERVGVPV 64
+L+RE + +++ C G S++ ES ++V+ E+VG PV
Sbjct: 66 VLKRELRHILGLNRKWGLCIVGMGRLGSALAD---YPGFGESFELRGFFDVDPEKVGRPV 122
Query: 65 KGGLYE-VDLV 74
+GG+ E VDL+
Sbjct: 123 RGGVIEHVDLL 133
>pdb|1XCB|A Chain A, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|B Chain B, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|C Chain C, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|D Chain D, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|E Chain E, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|F Chain F, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
pdb|1XCB|G Chain G, X-Ray Structure Of A Rex-Family RepressorNADH COMPLEX FROM
Thermus Aquaticus
Length = 211
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 5 LLQREEELLSNWWKEYAECSEGPRERASSIKKSDVQASLTESVRSAELYEVEEERVGVPV 64
+L+RE + +++ C G S++ ES ++V+ E+VG PV
Sbjct: 66 VLKRELRHILGLNRKWGLCIVGXGRLGSALAD---YPGFGESFELRGFFDVDPEKVGRPV 122
Query: 65 KGGLYE-VDLV 74
+GG+ E VDL+
Sbjct: 123 RGGVIEHVDLL 133
>pdb|3IIR|A Chain A, Crystal Structure Of Miraculin Like Protein From Seeds Of
Mu Koenigii
pdb|3IIR|B Chain B, Crystal Structure Of Miraculin Like Protein From Seeds Of
Mu Koenigii
Length = 190
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 80 PVYWNGDNRRVLRGHWFARKGGLDWLP 106
P W DN RG WF GG++ P
Sbjct: 88 PTVWRVDNYDPSRGKWFITTGGVEGNP 114
>pdb|3LN4|A Chain A, Crystal Structure Of Hla-B4103 In Complex With A 16mer
Self-Peptide Derived From Heterogeneous Nuclear
Ribonucleoproteins C1C2
Length = 274
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + ES+R+ Y + E G +Y D+
Sbjct: 55 EGPEYWDRETQISKTNTQ-TYRESLRNLRGYYNQSE-AGSHTLQRMYGCDV--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH G D++ + ED+ +Q+ R+
Sbjct: 104 --GPDGRLLRGHNQYAYDGKDYIALNEDLRSWTAADTAAQITQRK 146
>pdb|3W39|A Chain A, Crystal Structure Of Hla-b*5201 In Complexed With Hiv
Immunodominant Epitope (taftipsi)
pdb|3W39|D Chain D, Crystal Structure Of Hla-b*5201 In Complexed With Hiv
Immunodominant Epitope (taftipsi)
Length = 277
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + E++R A Y + E G +Y D+
Sbjct: 56 EGPEYWDRETQISKTNTQ-TYRENLRIALRYYNQSE-AGSHTWQTMYGCDV--------- 104
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH G D++ + ED++ +Q+ R+
Sbjct: 105 --GPDGRLLRGHNQYAYDGKDYIALNEDLSSWTAADTAAQITQRK 147
>pdb|1SYV|A Chain A, Hla-B4405 Complexed To The Dominant Self Ligand Eefgraygf
pdb|3DX8|A Chain A, Crystal Structure Of B4405 Presenting A 10mer Ebv Epitope
pdb|3DXA|A Chain A, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|F Chain F, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|K Chain K, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3KPP|A Chain A, Crystal Structure Of Hla B4405 In Complex With Eeylqafty A
Self Peptide From The Abcd3 Protein
pdb|3KPQ|A Chain A, Crystal Structure Of Hla B*4405 In Complex With Eeylkawtf,
A Mimotope
pdb|3KPR|A Chain A, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylkawtf A Mimotope
pdb|3KPR|F Chain F, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylkawtf A Mimotope
pdb|3KPS|A Chain A, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylqafty A Self Peptide From The Abcd3
Protein
Length = 276
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q + E++R+A Y + E G + +Y D+
Sbjct: 55 EGPEYWDRETQISKTNTQ-TYRENLRTALRYYNQSE-AGSHIIQRMYGCDV--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRG+ G D++ + ED++ +Q+ R+
Sbjct: 104 --GPDGRLLRGYDQYAYDGKDYIALNEDLSSWTAADTAAQITQRK 146
>pdb|1AGB|A Chain A, Antagonist Hiv-1 Gag Peptides Induce Structural Changes In
Hla B8-Hiv-1 Gag Peptide (Ggrkkykl-3r Mutation)
pdb|1AGC|A Chain A, Antagonist Hiv-1 Gag Peptides Induce Structural Changes In
Hla B8-Hiv-1 Gag Peptide (Ggkkkyql-7q Mutation)
pdb|1AGD|A Chain A, Antagonist Hiv-1 Gag Peptides Induce Structural Changes In
Hla B8-Hiv-1 Gag Peptide (Ggkkkykl-Index Peptide)
pdb|1AGE|A Chain A, Antagonist Hiv-1 Gag Peptides Induce Structural Changes In
Hla B8-Hiv-1 Gag Peptide (Ggkkkyrl-7r Mutation)
pdb|1AGF|A Chain A, Antagonist Hiv-1 Gag Peptides Induce Structural Changes In
Hla B8-Hiv-1 Gag Peptide (Ggkkrykl-5r Mutation)
pdb|3SKM|A Chain A, Crystal Structure Of The Hla-B8flrgrayvl, Mutant G8v Of
The Flr Peptide
pdb|3SPV|A Chain A, Crystal Structure Of A Peptide-Hla Complex
Length = 276
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q ES+R+ Y + E G +Y D+
Sbjct: 55 EGPEYWDRNTQIFKTNTQTDR-ESLRNLRGYYNQSE-AGSHTLQSMYGCDV--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH G D++ + ED+ +Q+ R+
Sbjct: 104 --GPDGRLLRGHNQYAYDGKDYIALNEDLRSWTAADTAAQITQRK 146
>pdb|1MI5|A Chain A, The Crystal Structure Of Lc13 Tcr In Complex With
Hlab8-Ebv Peptide Complex
pdb|1M05|A Chain A, Hla B8 In Complex With An Epstein Barr Virus Determinant
pdb|1M05|C Chain C, Hla B8 In Complex With An Epstein Barr Virus Determinant
pdb|3FFC|A Chain A, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
pdb|3FFC|F Chain F, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
pdb|3SJV|A Chain A, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|F Chain F, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|K Chain K, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|P Chain P, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
Length = 277
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 25 EGPR--ERASSIKKSDVQASLTESVRSAELYEVEEERVGVPVKGGLYEVDLVRRHCFPVY 82
EGP +R + I K++ Q ES+R+ Y + E G +Y D+
Sbjct: 55 EGPEYWDRNTQIFKTNTQTDR-ESLRNLRGYYNQSE-AGSHTLQSMYGCDV--------- 103
Query: 83 WNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRR 127
G + R+LRGH G D++ + ED+ +Q+ R+
Sbjct: 104 --GPDGRLLRGHNQYAYDGKDYIALNEDLRSWTAADTAAQITQRK 146
>pdb|3ZF7|FF Chain f, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 429
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 7 QREEELLSNWWKEYAECSEGPRERASSIKKSDVQASLTESVRSAELYEVEEERVGV 62
++ +L K++A +EG A ++K + +A + V +L ++ RVGV
Sbjct: 123 KQSAQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRKLRNNRVGV 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,195,214
Number of Sequences: 62578
Number of extensions: 202218
Number of successful extensions: 546
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 41
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)