Query 031098
Match_columns 166
No_of_seqs 115 out of 200
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 09:11:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2308 Phosphatidic acid-pref 99.9 5.1E-23 1.1E-27 195.7 5.8 144 3-152 90-240 (741)
2 PF02825 WWE: WWE domain; Int 96.8 0.0025 5.4E-08 43.4 4.6 54 93-148 8-61 (72)
3 smart00678 WWE Domain in Delte 96.5 0.0075 1.6E-07 41.6 5.3 52 94-148 2-54 (73)
4 PF02825 WWE: WWE domain; Int 62.2 16 0.00035 24.5 4.0 33 59-92 40-72 (72)
5 KOG2308 Phosphatidic acid-pref 36.0 14 0.00031 36.9 0.5 56 62-120 75-142 (741)
6 PF15651 Tox-SGS: Salivary gla 26.7 38 0.00082 26.1 1.3 29 77-109 44-72 (100)
7 PF08043 Xin: Xin repeat; Int 23.7 63 0.0014 17.4 1.5 15 89-108 2-16 (16)
8 PF14237 DUF4339: Domain of un 23.6 68 0.0015 20.1 1.9 26 95-120 2-28 (45)
9 PF13052 DUF3913: Protein of u 20.6 45 0.00097 23.1 0.6 10 153-163 17-26 (57)
10 PF08248 Tryp_FSAP: Tryptophyl 18.6 52 0.0011 16.6 0.4 9 82-90 4-12 (12)
No 1
>KOG2308 consensus Phosphatidic acid-preferring phospholipase A1, contains DDHD domain [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=5.1e-23 Score=195.74 Aligned_cols=144 Identities=32% Similarity=0.462 Sum_probs=119.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHhcCCCCCccCCCcccccccccCCCcccchhhhccC---ceeeEEecCceeEEecCCeeee
Q 031098 3 EHLLQREEELLSNWWKEYAECSEGPRERASSIKKSDVQASLTESVRSAELYEVEE---ERVGVPVKGGLYEVDLVRRHCF 79 (166)
Q Consensus 3 ~~~~~r~~~l~~~~w~e~ae~~~g~~~~~~~~~~~d~~a~~~~~s~~~~l~~~d~---e~~~V~V~ggLfeVdl~~r~l~ 79 (166)
++|+.|..+....||++|+.|..+..-.-+.-.+.. +.+.+-+++..|++... +...|+|+||||+||+..|+|.
T Consensus 90 ~~~~~~~~~~p~~~~r~~s~~~~~~~~~~~~~~~~~--~~p~~~~ds~~le~~~~~~~e~~~v~v~gG~Y~Vd~~~r~~~ 167 (741)
T KOG2308|consen 90 ASFLPRDSEAPEYWVRQYSGVNPHEFYRLTSEYKST--WTPSEHSDSDDLEEGENDDQESPPVVVEGGLYEVDKENRKCS 167 (741)
T ss_pred cccccccccCcccccccccCCCCChhhhcccccccc--ccccccccccccccccccCCccCceeecCCeeeeeeeccccc
Confidence 578999999999999999999888776654333333 22333345777776665 8889999999999999999999
Q ss_pred eeecCCCCcceEeeEeeeeCCCCceeeCCHHHHHHHHHHHhhcc----cccccccCCcceeEeEccceeeeeEeeee
Q 031098 80 PVYWNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQV----WHRRTFNLLDFLQLELTCKALLQYIYFLV 152 (166)
Q Consensus 80 PVYW~g~~~eVrRGtWF~~~~~~~~~Pl~E~lA~~LE~~Y~~~~----W~~~l~~p~ge~~v~~~~~~~~~~vh~L~ 152 (166)
||||+|+.++||||+||+++ +++|+||+|.+|++||.+|++++ |+....+..+.++.++|+. .++||++
T Consensus 168 pvYW~~d~~ev~Rg~WF~~~-~~~~~P~~e~~s~qlE~~yl~~~~~~~~~~~~~~~~~s~~s~~g~~---v~~~f~~ 240 (741)
T KOG2308|consen 168 PVYWSGDEKEVRRGTWFFDG-GSTLQPLEEELSEQLEAEYLNSFRTQELPENFTLFTASYISIHGKP---VVVSFKY 240 (741)
T ss_pred CCCCCCCcccceeeeeeecC-CCceeeccchhHHHHHHHHHHHhhhcccccccccccceeeeecCCc---eEEEeee
Confidence 99999999999999999986 78999999999999999999754 7788888888887667665 5578877
No 2
>PF02825 WWE: WWE domain; InterPro: IPR004170 The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein-protein interactions in ubiquitin and ADP ribose conjugation systems. This domain is found as a tandem repeat at the N-terminal of Deltex, a cytosolic effector of Notch signalling thought to bind the N-terminal of the Notch receptor []. It is also found as an interaction module in protein ubiquination and ADP ribosylation proteins [].; PDB: 2A90_A 1UJR_A 2DK6_A 3V3L_B.
Probab=96.81 E-value=0.0025 Score=43.41 Aligned_cols=54 Identities=19% Similarity=0.140 Sum_probs=36.2
Q ss_pred eEeeeeCCCCceeeCCHHHHHHHHHHHhhcccccccccCCcceeEeEccceeeeeE
Q 031098 93 GHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRRTFNLLDFLQLELTCKALLQYI 148 (166)
Q Consensus 93 GtWF~~~~~~~~~Pl~E~lA~~LE~~Y~~~~W~~~l~~p~ge~~v~~~~~~~~~~v 148 (166)
..|++.++++.|.||+++.+..||++|+.+.=.-.+...+.. -.+++..|+|+-
T Consensus 8 ~~W~w~~~~~~W~~Y~~~~~~~IE~a~~~~~~~~~~~~~~~~--Y~IDF~~M~Q~n 61 (72)
T PF02825_consen 8 YVWQWEDDDGGWHPYDPEVSEIIEEAYQNGKKSCQLSIGGRP--YTIDFKSMTQIN 61 (72)
T ss_dssp EEEEEESETSSEEE--HHHHHHHHHHHHTTTSEEEEEETTEE--EEEETTTTEEEE
T ss_pred EEEEEECCCCcEEeCCcHHHHHHHHHHHcCCcEEEEEeCCcE--EEEEChhcEEEe
Confidence 468887556799999999999999999975312223334333 457787777654
No 3
>smart00678 WWE Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis.
Probab=96.50 E-value=0.0075 Score=41.62 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=37.0
Q ss_pred EeeeeCCCCceeeCCHHHHHHHHHHHhhc-ccccccccCCcceeEeEccceeeeeE
Q 031098 94 HWFARKGGLDWLPIREDVAEQLEIAYRSQ-VWHRRTFNLLDFLQLELTCKALLQYI 148 (166)
Q Consensus 94 tWF~~~~~~~~~Pl~E~lA~~LE~~Y~~~-~W~~~l~~p~ge~~v~~~~~~~~~~v 148 (166)
.|++.++++.|.|+++..+..||++|..+ ... .+...+.. -.++++.|+|+-
T Consensus 2 ~W~w~~~~g~W~~Y~~~~~~~IE~ay~~~~~~~-~v~~~g~~--Y~IdF~~m~Q~n 54 (73)
T smart00678 2 VWEYEGRNGKWWPYDPRVSEDIEEAYAAGKKLC-ELSICGFP--YTIDFNAMTQYN 54 (73)
T ss_pred EEEEECCCCCeeeCChHHHHHHHHHHHcCCCeE-EEEECCeE--EEEECcCCEEEC
Confidence 58887666689999999999999999974 222 23333333 457777777764
No 4
>PF02825 WWE: WWE domain; InterPro: IPR004170 The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein-protein interactions in ubiquitin and ADP ribose conjugation systems. This domain is found as a tandem repeat at the N-terminal of Deltex, a cytosolic effector of Notch signalling thought to bind the N-terminal of the Notch receptor []. It is also found as an interaction module in protein ubiquination and ADP ribosylation proteins [].; PDB: 2A90_A 1UJR_A 2DK6_A 3V3L_B.
Probab=62.22 E-value=16 Score=24.47 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=23.6
Q ss_pred eeeEEecCceeEEecCCeeeeeeecCCCCcceEe
Q 031098 59 RVGVPVKGGLYEVDLVRRHCFPVYWNGDNRRVLR 92 (166)
Q Consensus 59 ~~~V~V~ggLfeVdl~~r~l~PVYW~g~~~eVrR 92 (166)
...|.+.+..|.||+.+|.-...--. ...+|+|
T Consensus 40 ~~~~~~~~~~Y~IDF~~M~Q~n~~t~-~~R~IrR 72 (72)
T PF02825_consen 40 SCQLSIGGRPYTIDFKSMTQINKDTG-TTRPIRR 72 (72)
T ss_dssp EEEEEETTEEEEEETTTTEEEESSSS--EEEEEE
T ss_pred EEEEEeCCcEEEEEChhcEEEeCCCC-CEeecCC
Confidence 45566779999999999987766544 4455555
No 5
>KOG2308 consensus Phosphatidic acid-preferring phospholipase A1, contains DDHD domain [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.98 E-value=14 Score=36.93 Aligned_cols=56 Identities=21% Similarity=0.162 Sum_probs=47.2
Q ss_pred EEec-CceeEEecCCeeeeeeecCCCCcceE-----------eeEeeeeCCCCceeeCCHHHHHHHHHHHh
Q 031098 62 VPVK-GGLYEVDLVRRHCFPVYWNGDNRRVL-----------RGHWFARKGGLDWLPIREDVAEQLEIAYR 120 (166)
Q Consensus 62 V~V~-ggLfeVdl~~r~l~PVYW~g~~~eVr-----------RGtWF~~~~~~~~~Pl~E~lA~~LE~~Y~ 120 (166)
..|. +.+++|+.......|-+|..+.+.|| |++|+++. .+.|.+-..+..||+.|.
T Consensus 75 ~e~~~~~l~~~~~~~~~~~~~~~~~p~~~~r~~s~~~~~~~~~~~~~~~~---~~~p~~~~ds~~le~~~~ 142 (741)
T KOG2308|consen 75 EEVFRDVLSEVDTLHASFLPRDSEAPEYWVRQYSGVNPHEFYRLTSEYKS---TWTPSEHSDSDDLEEGEN 142 (741)
T ss_pred cccchhhcccccccccccccccccCcccccccccCCCCChhhhccccccc---cccccccccccccccccc
Confidence 4455 79999999999999999998888777 66666653 799999999999999988
No 6
>PF15651 Tox-SGS: Salivary glad secreted protein domain toxin
Probab=26.68 E-value=38 Score=26.15 Aligned_cols=29 Identities=21% Similarity=0.510 Sum_probs=24.4
Q ss_pred eeeeeecCCCCcceEeeEeeeeCCCCceeeCCH
Q 031098 77 HCFPVYWNGDNRRVLRGHWFARKGGLDWLPIRE 109 (166)
Q Consensus 77 ~l~PVYW~g~~~eVrRGtWF~~~~~~~~~Pl~E 109 (166)
.|.||.|.|-+.-+.+|.++.= -|.|+..
T Consensus 44 ~C~Pi~w~G~pSv~C~Gq~ssf----iyTp~~~ 72 (100)
T PF15651_consen 44 SCMPIEWHGQPSVSCDGQQSSF----IYTPYET 72 (100)
T ss_pred CCcceeECCccceeeccceeee----EEccccC
Confidence 4999999999999999999863 5677764
No 7
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=23.67 E-value=63 Score=17.41 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=11.6
Q ss_pred ceEeeEeeeeCCCCceeeCC
Q 031098 89 RVLRGHWFARKGGLDWLPIR 108 (166)
Q Consensus 89 eVrRGtWF~~~~~~~~~Pl~ 108 (166)
.|+.++|.+.. +||+
T Consensus 2 DV~~~~wlFEt-----qplD 16 (16)
T PF08043_consen 2 DVKTTRWLFET-----QPLD 16 (16)
T ss_pred CcceeEEEeec-----ccCC
Confidence 48899999975 6764
No 8
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=23.59 E-value=68 Score=20.13 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=19.8
Q ss_pred eeeeCCCCceeeCC-HHHHHHHHHHHh
Q 031098 95 WFARKGGLDWLPIR-EDVAEQLEIAYR 120 (166)
Q Consensus 95 WF~~~~~~~~~Pl~-E~lA~~LE~~Y~ 120 (166)
||+..++...=|++ ++|...|.++-.
T Consensus 2 Wy~~~~g~~~GP~s~~el~~l~~~g~i 28 (45)
T PF14237_consen 2 WYYARNGQQQGPFSLEELRQLISSGEI 28 (45)
T ss_pred EEEeCCCeEECCcCHHHHHHHHHcCCC
Confidence 89988777788999 667777766643
No 9
>PF13052 DUF3913: Protein of unknown function (DUF3913)
Probab=20.64 E-value=45 Score=23.08 Aligned_cols=10 Identities=50% Similarity=1.119 Sum_probs=8.1
Q ss_pred ccCCCCCCCCC
Q 031098 153 KWEISVPSIPN 163 (166)
Q Consensus 153 ~~~~~~~~~~~ 163 (166)
-| ||||+||.
T Consensus 17 iw-dnvptipr 26 (57)
T PF13052_consen 17 IW-DNVPTIPR 26 (57)
T ss_pred hh-ccCCCccc
Confidence 57 89999885
No 10
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=18.57 E-value=52 Score=16.57 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=6.6
Q ss_pred ecCCCCcce
Q 031098 82 YWNGDNRRV 90 (166)
Q Consensus 82 YW~g~~~eV 90 (166)
||+.|.|.|
T Consensus 4 fw~ppiyp~ 12 (12)
T PF08248_consen 4 FWPPPIYPV 12 (12)
T ss_pred cCCCCcccC
Confidence 788887754
Done!