Query 031098
Match_columns 166
No_of_seqs 115 out of 200
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 14:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a90_A Deltex protein; WWE dom 96.5 0.007 2.4E-07 51.0 7.3 78 67-148 68-169 (240)
2 3v3l_A E3 ubiquitin-protein li 96.0 0.011 3.8E-07 42.0 5.1 52 94-148 6-57 (85)
3 1ujr_A Hypothetical protein AK 94.8 0.038 1.3E-06 41.4 4.7 52 94-148 31-82 (110)
4 2dk6_A PARP11 protein; structu 93.3 0.066 2.2E-06 39.4 3.4 54 94-148 21-81 (102)
5 2a90_A Deltex protein; WWE dom 85.9 0.74 2.5E-05 38.7 4.2 30 93-123 26-55 (240)
6 1x4r_A PARP14 protein; WWE dom 64.4 8.6 0.00029 28.3 4.3 28 94-122 28-55 (99)
7 1x4r_A PARP14 protein; WWE dom 49.6 20 0.00067 26.4 4.1 34 57-92 56-89 (99)
8 2vof_B BCL-2-binding component 27.0 28 0.00094 20.1 1.3 9 15-23 3-11 (26)
9 2yj1_B Alpha-beta-PUMA BH3 fol 22.3 23 0.00079 20.4 0.4 9 15-23 1-9 (26)
10 2ra9_A Uncharacterized protein 12.0 1.1E+02 0.0036 23.9 2.0 28 88-124 27-55 (150)
No 1
>2a90_A Deltex protein; WWE domain, metal binding protein; 2.15A {Drosophila melanogaster} SCOP: d.289.1.1 d.289.1.1
Probab=96.47 E-value=0.007 Score=51.02 Aligned_cols=78 Identities=18% Similarity=0.130 Sum_probs=55.8
Q ss_pred ceeEEecCCeeeeeeecCCC-----CcceEee------------EeeeeC---C-CCceeeCCHHHHHHHHHHHhhcccc
Q 031098 67 GLYEVDLVRRHCFPVYWNGD-----NRRVLRG------------HWFARK---G-GLDWLPIREDVAEQLEIAYRSQVWH 125 (166)
Q Consensus 67 gLfeVdl~~r~l~PVYW~g~-----~~eVrRG------------tWF~~~---~-~~~~~Pl~E~lA~~LE~~Y~~~~W~ 125 (166)
+.|.||+.+|+..--= .|. ...|||- .|+..+ + .+.|.||+..++..||.+|..+.
T Consensus 68 ~~y~IDf~sMtQ~~~d-tg~~~~~~~r~VRR~~~~PsS~~g~g~vWeW~d~~~D~~G~W~~Y~~~vs~~IE~Ay~~g~-- 144 (240)
T 2a90_A 68 EQYYVNVRTMTQESEA-ETAGSGLLTIGVRRMFYAPSSPAGKGTKWEWSGGSADSNNDWRPYNMHVQSIIEDAWARGE-- 144 (240)
T ss_dssp TTCEEETTTTEEEC----------CCCBEEEEEECTTSHHHHTEEEEEECSSSSCCSSEEECCHHHHHHHHHHHHTTC--
T ss_pred CceEEeccccEEEeec-cCccccccceeeeeccccCCCcCCCccEEEEeCCCCCCCCceEECCHHHHHHHHHHHhcCC--
Confidence 7799999999875422 455 7899993 788886 3 36899999999999999999864
Q ss_pred cccccC---CcceeEeEccceeeeeE
Q 031098 126 RRTFNL---LDFLQLELTCKALLQYI 148 (166)
Q Consensus 126 ~~l~~p---~ge~~v~~~~~~~~~~v 148 (166)
..+.+. .| ..-.++++.|+|+-
T Consensus 145 ~~v~L~~t~~G-~~Y~IDF~~MtQ~N 169 (240)
T 2a90_A 145 QTLDLSNTHIG-LPYTINFSNLTQLR 169 (240)
T ss_dssp SEEEHHHHTSS-CCEEEETTTTEEEE
T ss_pred CcceeeecCCC-ceEEEECCCcEEEe
Confidence 445552 33 33457777777653
No 2
>3v3l_A E3 ubiquitin-protein ligase RNF146; HET: V3L; 1.65A {Homo sapiens}
Probab=95.96 E-value=0.011 Score=42.02 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=38.2
Q ss_pred EeeeeCCCCceeeCCHHHHHHHHHHHhhcccccccccCCcceeEeEccceeeeeE
Q 031098 94 HWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRRTFNLLDFLQLELTCKALLQYI 148 (166)
Q Consensus 94 tWF~~~~~~~~~Pl~E~lA~~LE~~Y~~~~W~~~l~~p~ge~~v~~~~~~~~~~v 148 (166)
.|++.+++ .|.+|++.++..||++|..+. +.+++.-..+.-.+++..++|..
T Consensus 6 ~W~w~~~~-GW~~Yd~~~s~~IE~af~~~~--~~~~l~i~G~~Y~IdF~~m~Q~~ 57 (85)
T 3v3l_A 6 AWYYEGRN-GWWQYDERTSRELEDAFSKGK--KNTEMLIAGFLYVADLENMVQYR 57 (85)
T ss_dssp EEEEECSS-SEEECCHHHHHHHHHHHHTTC--SEEEEEETTEEEEEETTTTEEEE
T ss_pred EEEEeCCC-CceeCCHHHHHHHHHHHHhCC--CcEEEEeCCcEEEEEchhceeec
Confidence 59998754 599999999999999999763 33333333355677888887765
No 3
>1ujr_A Hypothetical protein AK012080; WWE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.289.1.1
Probab=94.76 E-value=0.038 Score=41.39 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=37.7
Q ss_pred EeeeeCCCCceeeCCHHHHHHHHHHHhhcccccccccCCcceeEeEccceeeeeE
Q 031098 94 HWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRRTFNLLDFLQLELTCKALLQYI 148 (166)
Q Consensus 94 tWF~~~~~~~~~Pl~E~lA~~LE~~Y~~~~W~~~l~~p~ge~~v~~~~~~~~~~v 148 (166)
.||+.+++ .|.+|++..+..||++|..+. +.+++.-+-+.-.++++.++|+.
T Consensus 31 ~W~w~gd~-GW~~Yd~~~s~~IE~Ay~~g~--~~~~l~i~G~~Y~IDF~~m~Q~r 82 (110)
T 1ujr_A 31 AWYYEGRN-GWWQYDERTSRELEDAFSKGK--KNTEMLIAGFLYVADLENMVQYR 82 (110)
T ss_dssp EEEEECSS-SEEECCSHHHHHHHHHHHHTC--SEEEEEETTEEEEEETTTTEEEE
T ss_pred EEEEeCCC-CCccCCHHHHHHHHHHHHcCC--CceEEEeCCcEEEEEhhHceeec
Confidence 69997654 699999999999999999764 22222222344567888888775
No 4
>2dk6_A PARP11 protein; structural genomics, WWE domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.28 E-value=0.066 Score=39.36 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=37.6
Q ss_pred EeeeeCCCCceeeCCHHH-------HHHHHHHHhhcccccccccCCcceeEeEccceeeeeE
Q 031098 94 HWFARKGGLDWLPIREDV-------AEQLEIAYRSQVWHRRTFNLLDFLQLELTCKALLQYI 148 (166)
Q Consensus 94 tWF~~~~~~~~~Pl~E~l-------A~~LE~~Y~~~~W~~~l~~p~ge~~v~~~~~~~~~~v 148 (166)
.||+.++.+.|.||..++ +..||++|+...= ..+.+.-|...-.++++.|+|+-
T Consensus 21 ~W~W~de~G~W~~Y~~~~~~~~sv~S~~IE~ay~~~~~-~~v~f~a~~~~Y~IdF~~M~Q~N 81 (102)
T 2dk6_A 21 GWFYLAECGKWHMFQPDTNSQCSVSSEDIEKSFKTNPC-GSISFTTSKFSYKIDFAEMKQMN 81 (102)
T ss_dssp EEEECCSSSCCEECCCBSSTTCBCCHHHHHHHHHHCTT-SEEEEEETTEEEEEETTTTEEEE
T ss_pred EEEEECCCCceeECCccccccccccHHHHHHHHhhCCC-CeEEEeeCCceEEEECCccEEec
Confidence 599976667899999966 8999999997430 11333334444567888877764
No 5
>2a90_A Deltex protein; WWE domain, metal binding protein; 2.15A {Drosophila melanogaster} SCOP: d.289.1.1 d.289.1.1
Probab=85.87 E-value=0.74 Score=38.72 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=25.1
Q ss_pred eEeeeeCCCCceeeCCHHHHHHHHHHHhhcc
Q 031098 93 GHWFARKGGLDWLPIREDVAEQLEIAYRSQV 123 (166)
Q Consensus 93 GtWF~~~~~~~~~Pl~E~lA~~LE~~Y~~~~ 123 (166)
..|.+.++ ++|.||+..+++.||++|.+..
T Consensus 26 ~vWEwqd~-g~W~pYs~~v~~~IE~a~~~~~ 55 (240)
T 2a90_A 26 SVWEFESR-GKWLPYSPAVSQHLERAHAKKL 55 (240)
T ss_dssp EEEEEEET-TEEEECCHHHHHHHHHHHHTTC
T ss_pred EEEEEecC-CeEeeCCHHHHHHHHHHhcCCC
Confidence 45777655 5999999999999999998654
No 6
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=64.41 E-value=8.6 Score=28.33 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=24.4
Q ss_pred EeeeeCCCCceeeCCHHHHHHHHHHHhhc
Q 031098 94 HWFARKGGLDWLPIREDVAEQLEIAYRSQ 122 (166)
Q Consensus 94 tWF~~~~~~~~~Pl~E~lA~~LE~~Y~~~ 122 (166)
.|-|.+ ++.|.|++.-..-+||++|+.+
T Consensus 28 eWqY~d-~~~~~~FDk~TNl~LEeA~~~k 55 (99)
T 1x4r_A 28 EWQYID-KNITQCFDKMTNMKLEVAWKAK 55 (99)
T ss_dssp EEEEEC-SSCEEECCTTHHHHHHHHHHTT
T ss_pred EEEEeC-CCeEeechHHHHHHHHHHHHcc
Confidence 488975 5689999999999999999875
No 7
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=49.60 E-value=20 Score=26.37 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=27.9
Q ss_pred CceeeEEecCceeEEecCCeeeeeeecCCCCcceEe
Q 031098 57 EERVGVPVKGGLYEVDLVRRHCFPVYWNGDNRRVLR 92 (166)
Q Consensus 57 ~e~~~V~V~ggLfeVdl~~r~l~PVYW~g~~~eVrR 92 (166)
...+.|.+++..|.|||.++...- =.|..+.|+|
T Consensus 56 k~~v~VkI~~~~y~Vdl~t~~A~~--~~G~~~~v~R 89 (99)
T 1x4r_A 56 KKDTVVQIHNQDFTVDLSTNTATA--PQGQTFTVQR 89 (99)
T ss_dssp CSEEEEEETTEEEEEETTTTEEEC--TTSCEEEEEE
T ss_pred CCceEEEECCEEEEEEcCcceeec--CCCCEEEEEE
Confidence 456678889999999999988776 5667888888
No 8
>2vof_B BCL-2-binding component 3; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2roc_B
Probab=27.02 E-value=28 Score=20.14 Aligned_cols=9 Identities=22% Similarity=0.564 Sum_probs=7.8
Q ss_pred HHHHHHHHh
Q 031098 15 NWWKEYAEC 23 (166)
Q Consensus 15 ~~w~e~ae~ 23 (166)
+||++|+-|
T Consensus 3 ~w~R~~~a~ 11 (26)
T 2vof_B 3 EWAREIGAQ 11 (26)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 699999877
No 9
>2yj1_B Alpha-beta-PUMA BH3 foldamer; apoptosis, membrane protein, BH3 domain, autophagy; HET: HT7 B3E B3Q HR7; 2.24A {Synthetic construct}
Probab=22.26 E-value=23 Score=20.43 Aligned_cols=9 Identities=0% Similarity=-0.119 Sum_probs=6.4
Q ss_pred HHHHHHHHh
Q 031098 15 NWWKEYAEC 23 (166)
Q Consensus 15 ~~w~e~ae~ 23 (166)
+||++|+-|
T Consensus 1 ~~~R~~~a~ 9 (26)
T 2yj1_B 1 XXARXIGAX 9 (26)
T ss_dssp -CHHHHHHH
T ss_pred ChHHHHHHH
Confidence 478888776
No 10
>2ra9_A Uncharacterized protein DUF1285; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.40A {Shewanella baltica}
Probab=12.00 E-value=1.1e+02 Score=23.88 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=18.8
Q ss_pred cceEe-eEeeeeCCCCceeeCCHHHHHHHHHHHhhccc
Q 031098 88 RRVLR-GHWFARKGGLDWLPIREDVAEQLEIAYRSQVW 124 (166)
Q Consensus 88 ~eVrR-GtWF~~~~~~~~~Pl~E~lA~~LE~~Y~~~~W 124 (166)
++|.| |+|||.+ .|+.. .|-+.|.+..+
T Consensus 27 i~I~~dG~W~y~G-----~pI~r----~lVrLFssiL~ 55 (150)
T 2ra9_A 27 FDINALGDWTYLG-----TSLPA----KFAKLFASILH 55 (150)
T ss_dssp EEECTTSCEEETT-----EECCH----HHHHHHHTTEE
T ss_pred eEECCCCcEEECC-----ccccH----HHHHHHHHheE
Confidence 34543 9999975 58884 46677766544
Done!