Query 031099
Match_columns 166
No_of_seqs 16 out of 18
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 09:12:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14290 DUF4370: Domain of un 100.0 2.7E-72 5.8E-77 470.0 14.2 159 1-163 1-161 (239)
2 PLN02749 Uncharacterized prote 100.0 1.3E-55 2.9E-60 356.6 9.9 95 69-163 1-95 (173)
3 PRK08230 tartrate dehydratase 79.7 4.6 9.9E-05 35.9 5.5 53 87-140 9-61 (299)
4 COG1951 TtdA Tartrate dehydrat 68.1 16 0.00034 32.8 6.0 54 86-140 8-61 (297)
5 PRK06246 fumarate hydratase; P 66.8 15 0.00032 32.3 5.5 59 81-140 2-60 (280)
6 PF05681 Fumerase: Fumarate hy 60.8 18 0.00039 31.5 4.9 51 89-140 2-52 (271)
7 PF00101 RuBisCO_small: Ribulo 58.3 8.6 0.00019 29.0 2.3 46 75-120 3-74 (99)
8 PRK10702 endonuclease III; Pro 57.0 6.9 0.00015 32.1 1.7 73 83-158 42-117 (211)
9 cd07119 ALDH_BADH-GbsA Bacillu 56.6 21 0.00045 31.5 4.7 51 75-125 24-82 (482)
10 cd03527 RuBisCO_small Ribulose 55.8 13 0.00029 28.2 2.9 45 75-119 4-74 (99)
11 COG4423 Uncharacterized protei 51.1 43 0.00093 25.1 4.9 72 82-158 4-80 (81)
12 PRK11241 gabD succinate-semial 49.6 26 0.00055 31.6 4.2 54 75-128 37-96 (482)
13 PF11841 DUF3361: Domain of un 48.6 68 0.0015 26.3 6.1 57 88-144 37-97 (160)
14 TIGR00722 ttdA_fumA_fumB hydro 48.5 36 0.00078 29.8 4.8 51 89-140 2-52 (273)
15 PRK15389 fumarate hydratase; P 45.9 45 0.00097 32.0 5.3 74 67-140 18-98 (536)
16 PF02436 PYC_OADA: Conserved c 43.2 14 0.00029 30.6 1.4 79 85-164 56-142 (196)
17 TIGR01237 D1pyr5carbox2 delta- 39.0 53 0.0011 29.7 4.5 49 76-124 59-113 (511)
18 KOG2120 SCF ubiquitin ligase, 38.9 39 0.00084 31.7 3.7 37 97-144 95-131 (419)
19 PLN02289 ribulose-bisphosphate 38.5 27 0.00058 29.5 2.4 31 70-101 64-94 (176)
20 PF03789 ELK: ELK domain ; In 37.4 27 0.00059 20.5 1.6 15 138-152 7-21 (22)
21 PF07849 DUF1641: Protein of u 37.1 30 0.00065 22.2 2.0 16 82-97 19-34 (42)
22 PRK10880 adenine DNA glycosyla 34.3 38 0.00082 30.2 2.8 71 84-158 44-117 (350)
23 cd07149 ALDH_y4uC Uncharacteri 33.2 80 0.0017 27.3 4.6 74 77-150 12-91 (453)
24 PRK09847 gamma-glutamyl-gamma- 32.0 1.5E+02 0.0032 26.8 6.2 74 75-148 46-138 (494)
25 PF02861 Clp_N: Clp amino term 31.2 42 0.00091 20.3 1.9 24 134-157 30-53 (53)
26 PLN02466 aldehyde dehydrogenas 30.7 3.3E+02 0.0071 25.2 8.3 52 74-125 83-142 (538)
27 KOG0034 Ca2+/calmodulin-depend 28.7 56 0.0012 26.8 2.7 48 83-130 121-168 (187)
28 cd07117 ALDH_StaphAldA1 Unchar 27.9 1.1E+02 0.0023 27.5 4.5 71 75-145 27-114 (475)
29 PF05480 Staph_haemo: Staphylo 27.3 48 0.0011 22.3 1.8 29 87-115 7-35 (43)
30 PF03810 IBN_N: Importin-beta 27.1 77 0.0017 20.4 2.7 25 91-115 39-71 (77)
31 cd07141 ALDH_F1AB_F2_RALDH1 NA 26.1 2.2E+02 0.0049 25.3 6.2 71 75-145 33-123 (481)
32 PF12974 Phosphonate-bd: ABC t 25.2 1E+02 0.0022 23.9 3.5 31 101-131 200-230 (243)
33 TIGR01083 nth endonuclease III 24.5 87 0.0019 24.7 3.0 73 82-157 38-113 (191)
34 cd07139 ALDH_AldA-Rv0768 Mycob 24.2 1.7E+02 0.0038 25.7 5.1 52 75-126 25-84 (471)
35 cd07131 ALDH_AldH-CAJ73105 Unc 24.1 1.2E+02 0.0027 26.7 4.2 48 77-124 28-81 (478)
36 PTZ00226 fumarate hydratase; P 23.3 2E+02 0.0044 28.1 5.7 65 76-140 64-128 (570)
37 COG2427 Uncharacterized conser 22.4 72 0.0016 25.0 2.2 18 80-97 120-137 (148)
38 PF09957 DUF2191: Uncharacteri 21.8 1.4E+02 0.0031 19.6 3.2 32 102-133 6-37 (47)
39 PF12631 GTPase_Cys_C: Catalyt 21.8 1.1E+02 0.0024 20.9 2.8 20 144-163 41-60 (73)
40 PLN03215 ascorbic acid mannose 21.7 80 0.0017 28.8 2.6 39 98-137 2-40 (373)
41 CHL00130 rbcS ribulose-1,5-bis 21.3 88 0.0019 25.6 2.5 27 75-101 6-32 (138)
42 TIGR01084 mutY A/G-specific ad 20.9 93 0.002 26.7 2.7 67 83-155 39-110 (275)
43 PF07528 DZF: DZF domain; Int 20.5 1.4E+02 0.0031 25.4 3.8 74 59-135 107-185 (248)
44 cd07146 ALDH_PhpJ Streptomyces 20.4 1.9E+02 0.0041 25.6 4.6 68 77-145 12-93 (451)
45 PF06519 TolA: TolA C-terminal 20.4 51 0.0011 24.4 0.9 19 76-94 73-91 (96)
No 1
>PF14290 DUF4370: Domain of unknown function (DUF4370)
Probab=100.00 E-value=2.7e-72 Score=469.99 Aligned_cols=159 Identities=58% Similarity=0.868 Sum_probs=150.5
Q ss_pred CchhhHHHHHHHHHHHhhhhhHHHhh--hhhhhhhhcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccCC
Q 031099 1 MEKIAVMSVRSIRRAACVRSSIIAAA--NNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVA 78 (166)
Q Consensus 1 Mek~~m~~lRs~~r~a~~~S~~~~~~--~~~~~~~~ss~~sl~t~~~~~~~~ps~~~~~d~~~~~s~~~g~~R~fS~d~~ 78 (166)
||| ||+.||++||++|+||++.++. .+|+++||.+.+++++++++. .+. ++++||++||+||||+||+||+|++
T Consensus 1 m~~-~~~~lr~~~R~~~~~s~~~~~~~~~~~~~~~~~~~~s~~~l~~~~--~~~-~~~s~~~~~~a~s~~~~R~fS~d~~ 76 (239)
T PF14290_consen 1 MEK-AMSALRSLLRSAALRSSRSSSASRSHHQIRHHLSSRSLFTLSSPS--SRN-RISSDCGGPFAMSWGSRRFFSEDVS 76 (239)
T ss_pred Cch-HHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhhhhccccCCCCcc--ccc-cccccccCCcccccchhhhcccccc
Confidence 887 5999999999999999987555 348899999999999999887 333 8899999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 031099 79 HMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGL 158 (166)
Q Consensus 79 hlP~i~Dpei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGiL~sLrmeiDDl~Gl 158 (166)
|||+|+||||++|||||||+||+|||++||++|||||||||||+|||||||||||||||||||||+|++|||||||||||
T Consensus 77 hlP~i~Dp~i~~afKdLmAasW~elp~svv~~akkalSk~tdD~AGqeaL~nvfRAAeAvEeFgG~L~tLrm~idDl~Gl 156 (239)
T PF14290_consen 77 HLPAISDPEIEKAFKDLMAASWDELPDSVVNEAKKALSKNTDDKAGQEALKNVFRAAEAVEEFGGILVTLRMEIDDLCGL 156 (239)
T ss_pred cCCCCCCHHHHHHHHHHHhcchhhCCHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccc
Q 031099 159 SECKT 163 (166)
Q Consensus 159 SGEn~ 163 (166)
|||||
T Consensus 157 sGEnv 161 (239)
T PF14290_consen 157 SGENV 161 (239)
T ss_pred CCCCC
Confidence 99998
No 2
>PLN02749 Uncharacterized protein At1g47420
Probab=100.00 E-value=1.3e-55 Score=356.57 Aligned_cols=95 Identities=66% Similarity=0.981 Sum_probs=94.1
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031099 69 CNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNI 148 (166)
Q Consensus 69 ~~R~fS~d~~hlP~i~Dpei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGiL~sL 148 (166)
++|+||+|++|||+|+||+|++|||||||+||+|||++|+++||+|||||||||||||||+||||||||||||||+|++|
T Consensus 1 ~~R~fs~d~~~lP~i~Dp~i~~afkdLma~sW~elp~sv~~~~kkalsk~tddkagqeaL~nvfrAAeAveeFgG~L~sL 80 (173)
T PLN02749 1 LRRRFSEDVSHLPEISDPEILKAFKDLMAASWDELPDSVVNDAKKALSKNTDDKAGQEALKNVFRAAEAVEEFGGTLVSL 80 (173)
T ss_pred CccccccccccCCCCCCHHHHHHHHHHHhcchhhCChHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCcccc
Q 031099 149 KMEFDDEIGLSECKT 163 (166)
Q Consensus 149 rmeiDDl~GlSGEn~ 163 (166)
|||||||||+|||||
T Consensus 81 rmeidDl~GlsGEnv 95 (173)
T PLN02749 81 RMEIDDLIGLSGENV 95 (173)
T ss_pred HHHHHHhcCCCCCCC
Confidence 999999999999998
No 3
>PRK08230 tartrate dehydratase subunit alpha; Validated
Probab=79.65 E-value=4.6 Score=35.94 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH
Q 031099 87 EIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE 140 (166)
Q Consensus 87 ei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEe 140 (166)
+|.++.++|+-..=..||+.|+...|+|..+-+ +..++.+|++.+.-++..++
T Consensus 9 ~i~~~v~~l~~~a~~~lp~Dv~~al~~a~~~E~-s~~ak~~L~~ileN~~iA~~ 61 (299)
T PRK08230 9 KLTDIMAKFTAYISKRLPDDVTAKLKELKDAET-SPLAKIIYDTMFENQQLAID 61 (299)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999999954 45579999999988887664
No 4
>COG1951 TtdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]
Probab=68.12 E-value=16 Score=32.80 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH
Q 031099 86 PEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE 140 (166)
Q Consensus 86 pei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEe 140 (166)
-++....+|+...-=+.||+.|++..++|+.+ .++.+++.+|+...+-+|-+++
T Consensus 8 e~l~~~v~~a~~~as~~lp~Dv~~al~~a~~~-Ees~~ak~~l~~il~N~~ia~~ 61 (297)
T COG1951 8 EDLTESVADAFQEASTYLPPDVVQALAKALER-EESEIAKYVLLQILENSRIAAK 61 (297)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHhh-hcCHHHHHHHHHHHHHHHHHHh
Confidence 35666777777777789999999999999999 8899999999999998888776
No 5
>PRK06246 fumarate hydratase; Provisional
Probab=66.84 E-value=15 Score=32.28 Aligned_cols=59 Identities=27% Similarity=0.342 Sum_probs=47.9
Q ss_pred CCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH
Q 031099 81 PVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE 140 (166)
Q Consensus 81 P~i~Dpei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEe 140 (166)
..|+--+|..+.++++..-=..||+.+++..++|+.+ -++..++.+|+....-++..++
T Consensus 2 ~~i~~~~i~~~v~~~~~~a~~~lp~Dv~~~l~~a~~~-E~s~~ak~~l~~ileN~~iA~~ 60 (280)
T PRK06246 2 REIHVEDIIEAVAELCIEANYYLPDDVKEALKKAYEK-EESPIGKEILKAILENAEIAKE 60 (280)
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh-ccChhHHHHHHHHHHHHHHHhc
Confidence 3455556999999999988899999999999999986 5555678888888887777665
No 6
>PF05681 Fumerase: Fumarate hydratase (Fumerase); InterPro: IPR004646 This entry represents various Fe-S type hydro-lyases, including the alpha subunit from both L-tartrate dehydratase (TtdA; 4.2.1.32 from EC) and class 1 fumarate hydratases (4.2.1.2 from EC), which includes both aerobic (FumA) and anaerobic (FumB) types []. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase (see IPR000362 from INTERPRO). Proteins in this group represent a subset of closely related proteins or modules, including the Escherichia coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this group is unknown. Fumarate hydratase (also known as fumarase) is a component of the citric acid cycle. In facultative anaerobes such as E. coli, fumarase also engages in the reductive pathway from oxaloacetate to succinate during anaerobic growth. Three fumarases, FumA, FumB, and FumC, have been reported in E. coli. fumA and fumB genes are homologous and encode products of identical sizes which form thermolabile dimers of Mr 120,000. FumA and FumB are class I enzymes and are members of the iron-dependent hydrolases, which include aconitase and malate hydratase. The active FumA contains a 4Fe-4S centre, and it can be inactivated upon oxidation to give a 3Fe-4S centre [].; GO: 0016829 lyase activity
Probab=60.77 E-value=18 Score=31.48 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=40.9
Q ss_pred HHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH
Q 031099 89 QRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE 140 (166)
Q Consensus 89 ~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEe 140 (166)
.++..+|+-.-=..||+.+++..++|+.+.+.+. ++.+|+...+-++..++
T Consensus 2 ~~~v~~~~~~a~~~lp~Dv~~al~~a~~~E~~~~-ak~vl~~ileN~~iA~~ 52 (271)
T PF05681_consen 2 TEAVAELIIKASTYLPDDVLEALKKAYERETSPL-AKWVLEQILENAEIAAK 52 (271)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHHHHHHhh
Confidence 4556666666668999999999999999966555 99999998888876654
No 7
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=58.29 E-value=8.6 Score=29.00 Aligned_cols=46 Identities=26% Similarity=0.559 Sum_probs=31.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc-----------------ccC--CCc-------hhHHHHHHhhhcccCC
Q 031099 75 EDVAHMPVIRDPEIQRAFKDLMAA-----------------DWG--ELP-------ASVIHDAKSALSRNND 120 (166)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa-----------------sW~--elp-------~svv~~akkalSk~tD 120 (166)
|+.+.||.++|.+|.+-+..|++- +|. .+| +.|+.+++.|++...+
T Consensus 3 et~S~lP~l~~~~i~~Qv~~ll~qG~~i~iE~ad~r~~r~~~W~mW~~p~~~~~~~~~Vl~el~~c~~~~p~ 74 (99)
T PF00101_consen 3 ETFSYLPPLTDEEIAKQVRYLLSQGWIIGIEHADPRRFRTSYWQMWKLPMFGCTDPAQVLAELEACLAEHPG 74 (99)
T ss_dssp STTTTSS---HHHHHHHHHHHHHTT-EEEEEEESCGGSTSSS-EEESSEBTTBSSHHHHHHHHHHHHHHSTT
T ss_pred cccccCCCCCHHHHHHHHHhhhhcCceeeEEecCCCCCCCCEeecCCCCCcCCCCHHHHHHHHHHHHHhCCC
Confidence 577899999999999999999985 455 554 4566677776665443
No 8
>PRK10702 endonuclease III; Provisional
Probab=56.96 E-value=6.9 Score=32.14 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhcCC
Q 031099 83 IRDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAV-EEFIGIIMNIKMEFDDEIGL 158 (166)
Q Consensus 83 i~Dpei~~afKdLmAa--sW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAv-EeFgGiL~sLrmeiDDl~Gl 158 (166)
-+|+.+.+++..|+.. +|..|-..=.++.+.+++..+=- ..--++..++|+.+ |+|||.+-..|.+|-.|=|.
T Consensus 42 t~~~~v~~~~~~L~~~~pt~e~l~~a~~~~l~~~i~~~G~y---~~kA~~l~~~a~~i~~~~~~~~p~~~~~Ll~lpGV 117 (211)
T PRK10702 42 ATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLY---NSKAENVIKTCRILLEQHNGEVPEDRAALEALPGV 117 (211)
T ss_pred cCHHHHHHHHHHHHHHcCCHHHHHCCCHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHcCCCCCchHHHHhcCCcc
Confidence 3678889999998864 33333333355566666542210 12235677777776 78899777777777666554
No 9
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=56.58 E-value=21 Score=31.55 Aligned_cols=51 Identities=22% Similarity=0.389 Sum_probs=40.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc----ccCCCc----hhHHHHHHhhhcccCCchhHH
Q 031099 75 EDVAHMPVIRDPEIQRAFKDLMAA----DWGELP----ASVIHDAKSALSRNNDDKAGQ 125 (166)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa----sW~elp----~svv~~akkalSk~tDDkAGq 125 (166)
+-+..+|....-++..+++..-++ .|..+| -.++..+...|.++.|+.+--
T Consensus 24 ~~i~~~~~~~~~~v~~av~~A~~a~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 82 (482)
T cd07119 24 EVIATVPEGTAEDAKRAIAAARRAFDSGEWPHLPAQERAALLFRIADKIREDAEELARL 82 (482)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHcCCCchhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 346677888888999999988777 599999 567778888888888877654
No 10
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=55.75 E-value=13 Score=28.18 Aligned_cols=45 Identities=20% Similarity=0.489 Sum_probs=34.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHccc-----------------C--CCc-------hhHHHHHHhhhcccC
Q 031099 75 EDVAHMPVIRDPEIQRAFKDLMAADW-----------------G--ELP-------ASVIHDAKSALSRNN 119 (166)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAasW-----------------~--elp-------~svv~~akkalSk~t 119 (166)
|+.+-||+++|.+|.+.+..|++--| . +|| +.|+.+++.|++...
T Consensus 4 ~t~sylp~lt~~~i~~QI~yll~qG~~~~lE~ad~~~~~~~yW~mwklP~f~~~d~~~Vl~ei~~C~~~~p 74 (99)
T cd03527 4 ETFSYLPPLTDEQIAKQIDYIISNGWAPCLEFTEPEHYDNRYWTMWKLPMFGCTDPAQVLREIEACRKAYP 74 (99)
T ss_pred cccccCCCCCHHHHHHHHHHHHhCCCEEEEEcccCCCCCCCEEeeccCCCCCCCCHHHHHHHHHHHHHHCC
Confidence 57889999999999999999998655 4 354 367777777766544
No 11
>COG4423 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.12 E-value=43 Score=25.10 Aligned_cols=72 Identities=25% Similarity=0.282 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcc-cCCchhHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhc
Q 031099 82 VIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSR-NNDDKAGQEVLKNVFSAAEAVEEFIG----IIMNIKMEFDDEI 156 (166)
Q Consensus 82 ~i~Dpei~~afKdLmAasW~elp~svv~~akkalSk-~tDDkAGqeaLknvfRAAeAvEeFgG----iL~sLrmeiDDl~ 156 (166)
.||||++-..-+.|-+.-=.-+-+.|+..++..|.+ ...-+.=.|+|+-.-+= +-.++| -+. +-+.||.-
T Consensus 4 nIKDp~~d~lar~LA~rtg~S~t~AV~~Al~~~lar~r~r~~pL~~~l~a~~~~---~~a~~~~~~k~~d--~~~~yD~~ 78 (81)
T COG4423 4 NIKDPEVDRLARELAARTGESKTDAVRDALKERLARLRAREIPLRERLAAILRR---LRALPSPDSKRLD--KILGYDER 78 (81)
T ss_pred ccCChHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHhcCCCcchhHH--HHhhcccc
Confidence 499999998888887766667788888888888888 33333334444332221 223443 222 46667776
Q ss_pred CC
Q 031099 157 GL 158 (166)
Q Consensus 157 Gl 158 (166)
|+
T Consensus 79 g~ 80 (81)
T COG4423 79 GL 80 (81)
T ss_pred cC
Confidence 64
No 12
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=49.59 E-value=26 Score=31.63 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=41.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCc----hhHHHHHHhhhcccCCchhHHHHH
Q 031099 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELP----ASVIHDAKSALSRNNDDKAGQEVL 128 (166)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp----~svv~~akkalSk~tDDkAGqeaL 128 (166)
+-+..+|..+.-++..|++..-++ .|.++| -.++..+...|.++.|+.+.-..+
T Consensus 37 ~~v~~~~~~~~~~v~~av~~A~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~ 96 (482)
T PRK11241 37 DKLGSVPKMGADETRAAIDAANRALPAWRALTAKERANILRRWFNLMMEHQDDLARLMTL 96 (482)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 456778888889999999888765 799999 456778888888888876654443
No 13
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=48.57 E-value=68 Score=26.25 Aligned_cols=57 Identities=23% Similarity=0.268 Sum_probs=46.0
Q ss_pred HHHHHHHHHH---cccCCCchhHHHHHHhhhcccC-CchhHHHHHHHHHHHHHHHHHHHHH
Q 031099 88 IQRAFKDLMA---ADWGELPASVIHDAKSALSRNN-DDKAGQEVLKNVFSAAEAVEEFIGI 144 (166)
Q Consensus 88 i~~afKdLmA---asW~elp~svv~~akkalSk~t-DDkAGqeaLknvfRAAeAvEeFgGi 144 (166)
.+.||-.||- .+|+-|+++.+..+-.-++++. |...-|-+|...-.....-...++.
T Consensus 37 ~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~ 97 (160)
T PF11841_consen 37 ALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQL 97 (160)
T ss_pred HHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHH
Confidence 5789999998 4999999999998888887777 7888888887777776666665654
No 14
>TIGR00722 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=48.55 E-value=36 Score=29.82 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=40.1
Q ss_pred HHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH
Q 031099 89 QRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE 140 (166)
Q Consensus 89 ~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEe 140 (166)
.++..+|+-..=..||+.|.+..++|..+ -+...++.+|+....-++..++
T Consensus 2 ~~~v~~~~~~a~~~lp~Dv~~al~~a~~~-E~s~~ak~~l~~ileN~~iA~~ 52 (273)
T TIGR00722 2 TEAVKEAIKEAVTRLPEDVVDAIKEAYDR-EESEIAKINLEAILDNIEIAEK 52 (273)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHhc
Confidence 45667777777788999999999999977 4555688899888887776654
No 15
>PRK15389 fumarate hydratase; Provisional
Probab=45.90 E-value=45 Score=32.04 Aligned_cols=74 Identities=8% Similarity=0.022 Sum_probs=55.9
Q ss_pred ccccccccccCCC-------CCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHH
Q 031099 67 IGCNRSFSEDVAH-------MPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVE 139 (166)
Q Consensus 67 ~g~~R~fS~d~~h-------lP~i~Dpei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvE 139 (166)
.-.+|.|.++++- +=-|.-.+|.++.++|+-..=..||+.|....++|+.+.-+...++.+|...+.-++..+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~v~~l~~~a~~~lp~Dv~~aL~~a~~~~E~s~~ak~vl~~ileN~~iA~ 97 (536)
T PRK15389 18 TEYRLLTSDGVSVAEFEGREILKVEPEALTLLAEEAFHDISHLLRPAHLQQLAKILDDPEASDNDKFVALDLLKNANIAA 97 (536)
T ss_pred ceeEEeccCceEEEeeCCeeEEEECHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh
Confidence 4445666654442 223455569999999999999999999999999998665667889999998888777665
Q ss_pred H
Q 031099 140 E 140 (166)
Q Consensus 140 e 140 (166)
+
T Consensus 98 ~ 98 (536)
T PRK15389 98 G 98 (536)
T ss_pred c
Confidence 4
No 16
>PF02436 PYC_OADA: Conserved carboxylase domain; InterPro: IPR003379 This domain represents a conserved region in pyruvate carboxylase (PYC) (6.4.1.1 from EC), oxaloacetate decarboxylase alpha chain (OADA) (4.1.1.3 from EC), and transcarboxylase 5s subunit (2.1.3.1 from EC). The domain is found adjacent to the HMGL-like domain (IPR000891 from INTERPRO) and often close to the biotin_lipoyl domain (IPR000089 from INTERPRO) of biotin requiring enzymes.; PDB: 2NX9_B 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1S3H_A 1RQE_A 1U5J_A 1RQB_A 2QF7_B ....
Probab=43.21 E-value=14 Score=30.57 Aligned_cols=79 Identities=16% Similarity=0.314 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHH------HHHHHhhhhhhhcCC
Q 031099 85 DPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIG------IIMNIKMEFDDEIGL 158 (166)
Q Consensus 85 Dpei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgG------iL~sLrmeiDDl~Gl 158 (166)
|-++.++..+|....|..+|++|++-+++-+-+ +-..-..|..+.|..--++++.--| -+..+|.++.+..|-
T Consensus 56 ~qA~~nV~~~~~g~r~~~~p~~v~~~~~G~~G~-pp~~~~~~l~~~vl~~~~~i~~RP~~~l~p~d~~~~r~~l~~~~g~ 134 (196)
T PF02436_consen 56 DQAVFNVLNGLLGERYKDFPDSVVDYLLGKYGK-PPGGFPEELRKKVLKGEEPITGRPGDLLPPADLDKLRKELEEKAGR 134 (196)
T ss_dssp HHHHHHHHTT-HHTTTSS-BHHHHHHHTTTT----TTSS-HHHHHHHHTTS---SSSGGGCS----HHHHHHHHHHHCTS
T ss_pred HHHHHHHHhhhcCccccchhHHHHHHhCcccCC-CCCCCCHHHHHHHhcCCCCCCCCccccCChhhHHHHHHHHHHHcCC
Confidence 445666666666778999999999999988877 5555567777777766555544444 577889999888763
Q ss_pred --Cccccc
Q 031099 159 --SECKTL 164 (166)
Q Consensus 159 --SGEn~~ 164 (166)
+-|++|
T Consensus 135 ~~~dedvl 142 (196)
T PF02436_consen 135 EPTDEDVL 142 (196)
T ss_dssp TSCHHHHH
T ss_pred CCCHHHHH
Confidence 555554
No 17
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=39.03 E-value=53 Score=29.69 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=37.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhH
Q 031099 76 DVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAG 124 (166)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAG 124 (166)
-+.++|..+..++..|++.--++ +|..+|.. ++..+...|.++.|+.+-
T Consensus 59 ~i~~~~~~~~~~v~~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~ 113 (511)
T TIGR01237 59 VVGKVGKASVEQAEHALQIAKKAFEAWKKTPVRERAGILRKAAAIMERRRHELNA 113 (511)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 45568888888998888877664 79999976 567788888888777663
No 18
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=38.91 E-value=39 Score=31.73 Aligned_cols=37 Identities=19% Similarity=0.495 Sum_probs=33.3
Q ss_pred HcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHH
Q 031099 97 AADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGI 144 (166)
Q Consensus 97 AasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGi 144 (166)
..+|+-|||.+....=++|.| |+..+++--|..|+|+
T Consensus 95 gv~~~slpDEill~IFs~L~k-----------k~LL~~~~VC~Rfyr~ 131 (419)
T KOG2120|consen 95 GVSWDSLPDEILLGIFSCLCK-----------KELLKVSGVCKRFYRL 131 (419)
T ss_pred CCCcccCCHHHHHHHHHhccH-----------HHHHHHHHHHHHHhhc
Confidence 467999999999999999988 6778899999999985
No 19
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=38.53 E-value=27 Score=29.51 Aligned_cols=31 Identities=23% Similarity=0.573 Sum_probs=27.9
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 031099 70 NRSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (166)
Q Consensus 70 ~R~fS~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (166)
.|.| |+.+-||.++|.+|.+-..=|+.-.|.
T Consensus 64 ~kkf-ETfSYLPpLtdeqI~kQVeYli~~GW~ 94 (176)
T PLN02289 64 KKKF-ETLSYLPDLTDEELAKEVDYLLRNKWV 94 (176)
T ss_pred ccce-eeeecCCCCCHHHHHHHHHHHHhCCCe
Confidence 4555 799999999999999999999999995
No 20
>PF03789 ELK: ELK domain ; InterPro: IPR005539 This domain is required for the nuclear localisation of these proteins []. All of these proteins are members of the Tale/Knox homeodomain family, a subfamily, containing homeobox IPR001356 from INTERPRO.; GO: 0003677 DNA binding, 0005634 nucleus
Probab=37.42 E-value=27 Score=20.55 Aligned_cols=15 Identities=27% Similarity=0.693 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhh
Q 031099 138 VEEFIGIIMNIKMEF 152 (166)
Q Consensus 138 vEeFgGiL~sLrmei 152 (166)
-.++||-|.+||.||
T Consensus 7 lrkY~g~i~~Lr~Ef 21 (22)
T PF03789_consen 7 LRKYSGYISSLRQEF 21 (22)
T ss_pred HHHHhHhHHHHHHHh
Confidence 357999999999987
No 21
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=37.15 E-value=30 Score=22.20 Aligned_cols=16 Identities=44% Similarity=0.816 Sum_probs=12.8
Q ss_pred CCCCHHHHHHHHHHHH
Q 031099 82 VIRDPEIQRAFKDLMA 97 (166)
Q Consensus 82 ~i~Dpei~~afKdLmA 97 (166)
.++||||++++-=+++
T Consensus 19 ~l~DpdvqrgL~~ll~ 34 (42)
T PF07849_consen 19 ALRDPDVQRGLGFLLA 34 (42)
T ss_pred HHcCHHHHHHHHHHHH
Confidence 4689999999877664
No 22
>PRK10880 adenine DNA glycosylase; Provisional
Probab=34.27 E-value=38 Score=30.25 Aligned_cols=71 Identities=15% Similarity=0.096 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhcCC
Q 031099 84 RDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAV-EEFIGIIMNIKMEFDDEIGL 158 (166)
Q Consensus 84 ~Dpei~~afKdLmAa--sW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAv-EeFgGiL~sLrmeiDDl~Gl 158 (166)
++..+..+|..||.. +|..|-+.-.+++++++..-+=- . --+|..++|+.+ +++||.+-..+.+|-.|=|+
T Consensus 44 ~v~~v~~~~~rl~~~fPt~~~La~a~~eel~~~~~glGyy---~-RAr~L~~~A~~i~~~~~g~~p~~~~~L~~LpGI 117 (350)
T PRK10880 44 QVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYY---A-RARNLHKAAQQVATLHGGEFPETFEEVAALPGV 117 (350)
T ss_pred cHHHHHHHHHHHHHHCcCHHHHHCcCHHHHHHHHHcCChH---H-HHHHHHHHHHHHHHHhCCCchhhHHHHhcCCCc
Confidence 567777888888874 23333333345555555553322 1 257888999988 88999877666665555443
No 23
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=33.24 E-value=80 Score=27.33 Aligned_cols=74 Identities=18% Similarity=0.297 Sum_probs=43.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031099 77 VAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKM 150 (166)
Q Consensus 77 ~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGiL~sLrm 150 (166)
+.++|...-.++..+++..-++ .|..+|.. ++..+...|.++.|+.+-.....+=--.+||-.|+...+..|+.
T Consensus 12 ~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~l~~ 91 (453)
T cd07149 12 IGRVPVASEEDVEKAIAAAKEGAKEMKSLPAYERAEILERAAQLLEERREEFARTIALEAGKPIKDARKEVDRAIETLRL 91 (453)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 3455666666777666665533 69999876 55666777777666665444433333334444555556655553
No 24
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=32.03 E-value=1.5e+02 Score=26.78 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=52.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc----ccCCCch----hHHHHHHhhhcccCCchhHH----------HHH-HHHHHHH
Q 031099 75 EDVAHMPVIRDPEIQRAFKDLMAA----DWGELPA----SVIHDAKSALSRNNDDKAGQ----------EVL-KNVFSAA 135 (166)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa----sW~elp~----svv~~akkalSk~tDDkAGq----------eaL-knvfRAA 135 (166)
+-+..+|..+..++..|++..-++ .|..+|. .++..+...|.++.|+.+-- +++ .+|-+++
T Consensus 46 ~~i~~v~~~~~~dv~~av~aA~~a~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~~ev~~~~ 125 (494)
T PRK09847 46 APLAKIARGKSVDIDRAVSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDDIPGAA 125 (494)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456778899999999999988876 5999995 45666777777777766532 233 2566667
Q ss_pred HHHHHHHHHHHHH
Q 031099 136 EAVEEFIGIIMNI 148 (166)
Q Consensus 136 eAvEeFgGiL~sL 148 (166)
+.++.|.+.+..+
T Consensus 126 ~~l~~~a~~~~~~ 138 (494)
T PRK09847 126 RAIRWYAEAIDKV 138 (494)
T ss_pred HHHHHHHHHHHHh
Confidence 7777766665544
No 25
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=31.20 E-value=42 Score=20.30 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcC
Q 031099 134 AAEAVEEFIGIIMNIKMEFDDEIG 157 (166)
Q Consensus 134 AAeAvEeFgGiL~sLrmeiDDl~G 157 (166)
+.+..+++|.-...|+.+|+..+|
T Consensus 30 ~~~il~~~~id~~~l~~~i~~~lg 53 (53)
T PF02861_consen 30 AARILKKLGIDPEQLKAAIEKALG 53 (53)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhC
Confidence 456778899999999999988776
No 26
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=30.75 E-value=3.3e+02 Score=25.24 Aligned_cols=52 Identities=23% Similarity=0.350 Sum_probs=39.5
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHc----ccCCCchh----HHHHHHhhhcccCCchhHH
Q 031099 74 SEDVAHMPVIRDPEIQRAFKDLMAA----DWGELPAS----VIHDAKSALSRNNDDKAGQ 125 (166)
Q Consensus 74 S~d~~hlP~i~Dpei~~afKdLmAa----sW~elp~s----vv~~akkalSk~tDDkAGq 125 (166)
.+-+.++|.....|+.+|++..-++ .|..+|.. ++..+...|.++.|+.+--
T Consensus 83 g~~i~~v~~~~~~dv~~Av~aA~~a~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 142 (538)
T PLN02466 83 GEVIAHVAEGDAEDVNRAVAAARKAFDEGPWPKMTAYERSRILLRFADLLEKHNDELAAL 142 (538)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHcCcCccccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3456678888999999999987776 49998865 4666777788877776654
No 27
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=28.66 E-value=56 Score=26.84 Aligned_cols=48 Identities=8% Similarity=0.169 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHH
Q 031099 83 IRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKN 130 (166)
Q Consensus 83 i~Dpei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLkn 130 (166)
|+-.|++..++.+...+|++..+.+...+.+.+.+..-|+-|+=-+..
T Consensus 121 I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeE 168 (187)
T KOG0034|consen 121 ISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEE 168 (187)
T ss_pred CcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHH
Confidence 888999999999999999998888899999999998888888754443
No 28
>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.
Probab=27.92 E-value=1.1e+02 Score=27.50 Aligned_cols=71 Identities=23% Similarity=0.377 Sum_probs=48.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHHHHH-----------HHHHHHHHH
Q 031099 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQEVL-----------KNVFSAAEA 137 (166)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAGqeaL-----------knvfRAAeA 137 (166)
+-+..+|.....++..|++...++ +|..+|.. ++..+...|.++.|+.+--..+ .+|-++++.
T Consensus 27 ~~i~~~~~~~~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~i~~ 106 (475)
T cd07117 27 ETLSEITDATDADVDRAVKAAQEAFKTWRKTTVAERANILNKIADIIDENKELLAMVETLDNGKPIRETRAVDIPLAADH 106 (475)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345678888888999888887664 69999975 6777788888887776654333 244555555
Q ss_pred HHHHHHHH
Q 031099 138 VEEFIGII 145 (166)
Q Consensus 138 vEeFgGiL 145 (166)
++.|.+.+
T Consensus 107 l~~~a~~~ 114 (475)
T cd07117 107 FRYFAGVI 114 (475)
T ss_pred HHHHHHHH
Confidence 55554443
No 29
>PF05480 Staph_haemo: Staphylococcus haemolytic protein; InterPro: IPR008846 This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus []. Gonococcal growth inhibitor from Staphylococcus acts on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death [].; GO: 0009405 pathogenesis
Probab=27.28 E-value=48 Score=22.34 Aligned_cols=29 Identities=17% Similarity=0.402 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHhhh
Q 031099 87 EIQRAFKDLMAADWGELPASVIHDAKSAL 115 (166)
Q Consensus 87 ei~~afKdLmAasW~elp~svv~~akkal 115 (166)
.|.++.+.=...+|.+|--|.++.+.+.+
T Consensus 7 AI~n~V~Ag~~~Dwa~lgtsIv~iv~ngv 35 (43)
T PF05480_consen 7 AIKNTVQAGQNQDWAKLGTSIVDIVENGV 35 (43)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 57777788888999999999999988754
No 30
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=27.07 E-value=77 Score=20.36 Aligned_cols=25 Identities=32% Similarity=0.639 Sum_probs=21.7
Q ss_pred HHHHHHHcccC--------CCchhHHHHHHhhh
Q 031099 91 AFKDLMAADWG--------ELPASVIHDAKSAL 115 (166)
Q Consensus 91 afKdLmAasW~--------elp~svv~~akkal 115 (166)
.||.....+|+ .+|+..-..+|..|
T Consensus 39 ~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~l 71 (77)
T PF03810_consen 39 LLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQL 71 (77)
T ss_dssp HHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCchhhccCCCCCCHHHHHHHHHHH
Confidence 58999999999 89999888888765
No 31
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=26.10 E-value=2.2e+02 Score=25.34 Aligned_cols=71 Identities=18% Similarity=0.294 Sum_probs=46.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc-----ccCCCchh----HHHHHHhhhcccCCchhHH-----------HHHHHHHHH
Q 031099 75 EDVAHMPVIRDPEIQRAFKDLMAA-----DWGELPAS----VIHDAKSALSRNNDDKAGQ-----------EVLKNVFSA 134 (166)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa-----sW~elp~s----vv~~akkalSk~tDDkAGq-----------eaLknvfRA 134 (166)
+-+..+|.....++..+++..-++ .|..+|.. ++..+.+.|.++.|+.+-- ..+.++-++
T Consensus 33 ~~i~~~~~~~~~~v~~av~~A~~A~~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~ 112 (481)
T cd07141 33 EKICEVQEGDKADVDKAVKAARAAFKLGSPWRTMDASERGRLLNKLADLIERDRAYLASLETLDNGKPFSKSYLVDLPGA 112 (481)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345567777888898888887775 59999976 4566677777777665532 123455556
Q ss_pred HHHHHHHHHHH
Q 031099 135 AEAVEEFIGII 145 (166)
Q Consensus 135 AeAvEeFgGiL 145 (166)
.+.++.+-+..
T Consensus 113 ~~~l~~~a~~~ 123 (481)
T cd07141 113 IKVLRYYAGWA 123 (481)
T ss_pred HHHHHHHHHHH
Confidence 55555555433
No 32
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A.
Probab=25.20 E-value=1e+02 Score=23.93 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=25.6
Q ss_pred CCCchhHHHHHHhhhcccCCchhHHHHHHHH
Q 031099 101 GELPASVIHDAKSALSRNNDDKAGQEVLKNV 131 (166)
Q Consensus 101 ~elp~svv~~akkalSk~tDDkAGqeaLknv 131 (166)
.++|+.+++.++.+|-+...+..|+++|+..
T Consensus 200 ~~~~~~~~~~l~~al~~~~~~~~~~~~l~~~ 230 (243)
T PF12974_consen 200 PDLPPELRQRLRDALLSLSKDPEGKAILDAF 230 (243)
T ss_dssp TTS-HHHHHHHHHHHHHTTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHcCCCChhhHHHHHhc
Confidence 4589999999999999988899999888754
No 33
>TIGR01083 nth endonuclease III. This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=24.47 E-value=87 Score=24.70 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhcC
Q 031099 82 VIRDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAV-EEFIGIIMNIKMEFDDEIG 157 (166)
Q Consensus 82 ~i~Dpei~~afKdLmAa--sW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAv-EeFgGiL~sLrmeiDDl~G 157 (166)
..++..+.+++..|... +|..|-..-.++.+.+++..+=- .---+++...|+++ ++|||.+...+.+|-.+=|
T Consensus 38 qt~~~~~~~~~~~l~~~~pt~~~l~~~~~~~L~~~ir~~G~~---~~Ka~~i~~~a~~i~~~~~~~~~~~~~~L~~l~G 113 (191)
T TIGR01083 38 QATDKSVNKATKKLFEVYPTPQALAQAGLEELEEYIKSIGLY---RNKAKNIIALCRILVERYGGEVPEDREELVKLPG 113 (191)
T ss_pred hCcHHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHHcCCCCchHHHHHHhCCC
Confidence 34677778888877753 12222111122333333332211 11235666777775 6788866666666555544
No 34
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=24.16 E-value=1.7e+02 Score=25.73 Aligned_cols=52 Identities=25% Similarity=0.324 Sum_probs=39.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc----ccCCCc----hhHHHHHHhhhcccCCchhHHH
Q 031099 75 EDVAHMPVIRDPEIQRAFKDLMAA----DWGELP----ASVIHDAKSALSRNNDDKAGQE 126 (166)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa----sW~elp----~svv~~akkalSk~tDDkAGqe 126 (166)
+-+..+|..+..++..|++..-.+ .|..+| ..++..+...|.++.|+.+...
T Consensus 25 ~~i~~~~~~~~~~v~~av~~a~~a~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 84 (471)
T cd07139 25 EVVGRVPEATPADVDAAVAAARRAFDNGPWPRLSPAERAAVLRRLADALEARADELARLW 84 (471)
T ss_pred CEeEEEeCCCHHHHHHHHHHHHHHcCCCchhhCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456778888888999999887776 399998 4567777788888777776543
No 35
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=24.10 E-value=1.2e+02 Score=26.68 Aligned_cols=48 Identities=21% Similarity=0.459 Sum_probs=34.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhH
Q 031099 77 VAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAG 124 (166)
Q Consensus 77 ~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAG 124 (166)
+..+|...+.++..+++..-++ .|..+|.. ++..+...|.++.|+.+-
T Consensus 28 ~~~~~~~~~~~v~~av~~a~~A~~~w~~~~~~~R~~~l~~~a~~l~~~~~ela~ 81 (478)
T cd07131 28 VGTFPLSTASDVDAAVEAAREAFPEWRKVPAPRRAEYLFRAAELLKKRKEELAR 81 (478)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777888888877776543 69999876 566677777777776543
No 36
>PTZ00226 fumarate hydratase; Provisional
Probab=23.25 E-value=2e+02 Score=28.06 Aligned_cols=65 Identities=8% Similarity=-0.015 Sum_probs=50.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH
Q 031099 76 DVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE 140 (166)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEe 140 (166)
+-..|-.|.=..|..+.++++..-=..||+.+....++++........++.+|.+..+-|+..++
T Consensus 64 ~~~~m~~v~~e~l~~~~~~a~~~a~~~Lp~D~~~aL~~a~~d~E~s~~~k~vl~~iL~Na~iA~~ 128 (570)
T PTZ00226 64 GGKEILKVPPEALTKLTSYAFSDIQHFLRKSHLAQLRRILDDPEASDNDRFVAMTLLKNACIAAG 128 (570)
T ss_pred CCceeeeecHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHHHhc
Confidence 34455556533488999999988889999999999999998655566688888888777776543
No 37
>COG2427 Uncharacterized conserved protein [Function unknown]
Probab=22.36 E-value=72 Score=24.98 Aligned_cols=18 Identities=28% Similarity=0.706 Sum_probs=14.6
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 031099 80 MPVIRDPEIQRAFKDLMA 97 (166)
Q Consensus 80 lP~i~Dpei~~afKdLmA 97 (166)
+-.++||||++++.-|++
T Consensus 120 lk~LkDPdvq~~Lg~lls 137 (148)
T COG2427 120 LKALKDPDVQRGLGFLLS 137 (148)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 345789999999988775
No 38
>PF09957 DUF2191: Uncharacterized protein conserved in bacteria (DUF2191); InterPro: IPR019239 This entry, found in various hypothetical prokaryotic proteins, has no known function.
Probab=21.79 E-value=1.4e+02 Score=19.56 Aligned_cols=32 Identities=13% Similarity=0.282 Sum_probs=24.0
Q ss_pred CCchhHHHHHHhhhcccCCchhHHHHHHHHHH
Q 031099 102 ELPASVIHDAKSALSRNNDDKAGQEVLKNVFS 133 (166)
Q Consensus 102 elp~svv~~akkalSk~tDDkAGqeaLknvfR 133 (166)
+|||.++.+|...-.-.|...+=.+||+..-+
T Consensus 6 ~iDd~Ll~eA~~l~g~~tk~~~V~~ALr~~i~ 37 (47)
T PF09957_consen 6 DIDDELLAEAMRLTGTKTKKEAVNEALRELIR 37 (47)
T ss_pred eeCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 58999999998887766766666677766544
No 39
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=21.75 E-value=1.1e+02 Score=20.87 Aligned_cols=20 Identities=0% Similarity=0.034 Sum_probs=15.3
Q ss_pred HHHHHhhhhhhhcCCCcccc
Q 031099 144 IIMNIKMEFDDEIGLSECKT 163 (166)
Q Consensus 144 iL~sLrmeiDDl~GlSGEn~ 163 (166)
+-..||.+++.|-.++|+.+
T Consensus 41 ~a~~L~~A~~~L~~ItG~~~ 60 (73)
T PF12631_consen 41 VAEDLREALESLGEITGEVV 60 (73)
T ss_dssp HHHHHHHHHHHHHHHCTSS-
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 45678888888888888754
No 40
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=21.74 E-value=80 Score=28.80 Aligned_cols=39 Identities=21% Similarity=0.357 Sum_probs=32.2
Q ss_pred cccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHH
Q 031099 98 ADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEA 137 (166)
Q Consensus 98 asW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeA 137 (166)
+.|.+||+.++..+-+.|.. .-|-.--.++=.-||+|-+
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~-~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFS-NVELKRFRSICRSWRSSVS 40 (373)
T ss_pred CChhhCCHHHHHHHHhhCCc-HHHHHHHHhhhhhHHHhcc
Confidence 57999999999999999955 3477777888889999744
No 41
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=21.33 E-value=88 Score=25.58 Aligned_cols=27 Identities=15% Similarity=0.511 Sum_probs=25.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHcccC
Q 031099 75 EDVAHMPVIRDPEIQRAFKDLMAADWG 101 (166)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (166)
|+.|-||+++|-+|.+-..=++.-.|.
T Consensus 6 eTfSyLPpLTdeqI~kQI~Y~i~~GW~ 32 (138)
T CHL00130 6 GTFSFLPDLTDQQIEKQIQYAISKGWA 32 (138)
T ss_pred ceeccCCCCCHHHHHHHHHHHHhcCCe
Confidence 688999999999999999999999996
No 42
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=20.94 E-value=93 Score=26.72 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHcccCCCchhHH----HHHHhhhcccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhh
Q 031099 83 IRDPEIQRAFKDLMAADWGELPASVI----HDAKSALSRNNDDKAGQEVLKNVFSAAEAV-EEFIGIIMNIKMEFDDE 155 (166)
Q Consensus 83 i~Dpei~~afKdLmAasW~elp~svv----~~akkalSk~tDDkAGqeaLknvfRAAeAv-EeFgGiL~sLrmeiDDl 155 (166)
.++..+..++..|++. |-. |+++. +++.+++...+=- . --+|+.++|+.+ ++|||.+-..+.+|-.|
T Consensus 39 T~v~~v~~~~~rl~~~-fpt-~~~La~a~~eeL~~~~~~lG~y--~--RAr~L~~~A~~i~~~~~g~~p~~~~~L~~L 110 (275)
T TIGR01084 39 TQVATVIPYFERFLER-FPT-VQALANAPQDEVLKLWEGLGYY--A--RARNLHKAAQEVVEEFGGEFPQDFEDLAAL 110 (275)
T ss_pred ccHHHHHHHHHHHHHh-CCC-HHHHHCcCHHHHHHHHHHCCcH--H--HHHHHHHHHHHHHHHcCCCCcHHHHHHHhC
Confidence 3677788888888864 321 22222 3343333332221 1 146888999987 56788766554444333
No 43
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO). This domain is found exclusively in the metazoa.
Probab=20.50 E-value=1.4e+02 Score=25.44 Aligned_cols=74 Identities=18% Similarity=0.322 Sum_probs=52.6
Q ss_pred CCCcccccccccccccccCCCCCCCCCHHHHHHHHHHHH--cccCCCch-hHHHHHHhhhcccC--CchhHHHHHHHHHH
Q 031099 59 CRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMA--ADWGELPA-SVIHDAKSALSRNN--DDKAGQEVLKNVFS 133 (166)
Q Consensus 59 ~~~~~s~~~g~~R~fS~d~~hlP~i~Dpei~~afKdLmA--asW~elp~-svv~~akkalSk~t--DDkAGqeaLknvfR 133 (166)
|...++ .+---|.|.++..++|.| --+-..||||-. -.|..|++ .+.--+.++++.|+ .--.=-+|+..||.
T Consensus 107 cl~aLa-alRhakWFq~~a~~l~s~--~~viRIlrDl~~R~p~w~~L~~W~leLL~~~~i~~~~~~~~l~~g~a~RRvle 183 (248)
T PF07528_consen 107 CLSALA-ALRHAKWFQARANGLQSC--VIVIRILRDLRQRVPTWQPLSSWALELLVEKAISNNSSRQPLSPGDAFRRVLE 183 (248)
T ss_pred HHHHHH-HHHHhHHHHHHhccCCCc--ceehhhHHHHHHhCCCCCCCChhHHHHHHHHHeeeCCCCCCCChHHHHHHHHH
Confidence 444443 234457799999999987 467888999965 46999999 66668999999443 33333488888887
Q ss_pred HH
Q 031099 134 AA 135 (166)
Q Consensus 134 AA 135 (166)
+-
T Consensus 184 ~l 185 (248)
T PF07528_consen 184 CL 185 (248)
T ss_pred HH
Confidence 54
No 44
>cd07146 ALDH_PhpJ Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like. Putative phosphonoformaldehyde dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog reportedly involved in the biosynthesis of phosphinothricin tripeptides in Streptomyces viridochromogenes DSM 40736, and similar sequences are included in this CD.
Probab=20.38 E-value=1.9e+02 Score=25.65 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=41.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcccCCCchh----HHHHHHhhhcccCCchhHH----------HHHHHHHHHHHHHHHHH
Q 031099 77 VAHMPVIRDPEIQRAFKDLMAADWGELPAS----VIHDAKSALSRNNDDKAGQ----------EVLKNVFSAAEAVEEFI 142 (166)
Q Consensus 77 ~~hlP~i~Dpei~~afKdLmAasW~elp~s----vv~~akkalSk~tDDkAGq----------eaLknvfRAAeAvEeFg 142 (166)
+..+|....-++..|+..-..+ |..+|.. ++..+...|.++.|+.+-. |+..++.++++.++.|.
T Consensus 12 i~~~~~~~~~~v~~av~~A~~~-~~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a 90 (451)
T cd07146 12 VGTVPAGTEEALREALALAASY-RSTLTRYQRSAILNKAAALLEARREEFARLITLESGLCLKDTRYEVGRAADVLRFAA 90 (451)
T ss_pred EEEEcCCCHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4456777777888888877664 8777754 4555566666666655433 34445555555555554
Q ss_pred HHH
Q 031099 143 GII 145 (166)
Q Consensus 143 GiL 145 (166)
+..
T Consensus 91 ~~~ 93 (451)
T cd07146 91 AEA 93 (451)
T ss_pred HHH
Confidence 433
No 45
>PF06519 TolA: TolA C-terminal; InterPro: IPR014161 TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cut-offs are based largely on conserved operon structure. The Tol-Pal complex is required for maintaining outer membrane integrity, and is also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins OmpC, PhoE and LamB.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2X9A_D 3QDP_A 3QDR_A 1TOL_A 1S62_A.
Probab=20.37 E-value=51 Score=24.37 Aligned_cols=19 Identities=32% Similarity=0.637 Sum_probs=12.2
Q ss_pred cCCCCCCCCCHHHHHHHHH
Q 031099 76 DVAHMPVIRDPEIQRAFKD 94 (166)
Q Consensus 76 d~~hlP~i~Dpei~~afKd 94 (166)
....||.=.||++++.||+
T Consensus 73 k~~~~P~ppd~~vy~~~k~ 91 (96)
T PF06519_consen 73 KAAKFPPPPDPDVYEKFKN 91 (96)
T ss_dssp CCS-----SSHHHHHHHTT
T ss_pred HhcCCCCCcCHHHHHHHhc
Confidence 4578999999999999996
Done!