Query 031099
Match_columns 166
No_of_seqs 16 out of 18
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 14:30:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1svd_M Ribulose bisphosphate c 67.1 3.8 0.00013 30.6 2.8 30 70-100 10-39 (110)
2 1bwv_S Rubisco, protein (ribul 66.6 4.3 0.00015 31.5 3.1 30 71-100 2-31 (138)
3 1rbl_M Ribulose 1,5 bisphospha 66.3 4.4 0.00015 30.2 3.0 31 69-100 7-37 (109)
4 1wdd_S Ribulose bisphosphate c 65.1 4.1 0.00014 31.3 2.8 29 71-100 10-38 (128)
5 1bxn_I Rubisco, protein (ribul 64.1 4.6 0.00016 31.4 2.9 30 71-100 2-31 (139)
6 1gk8_I Ribulose bisphosphate c 61.2 5.3 0.00018 31.2 2.8 30 71-101 10-39 (140)
7 4f0h_B Ribulose bisphosphate c 55.5 8.8 0.0003 29.9 3.1 31 71-101 2-32 (138)
8 3r84_A Mediator of RNA polymer 51.9 9.5 0.00032 27.5 2.6 48 109-158 22-76 (86)
9 1wnd_A Putative betaine aldehy 45.7 16 0.00055 31.6 3.6 50 75-124 49-104 (495)
10 3zxw_B Ribulose bisphosphate c 44.0 13 0.00043 28.1 2.3 48 71-119 8-81 (118)
11 4f3x_A Putative aldehyde dehyd 40.9 20 0.00069 31.0 3.4 51 75-125 51-107 (498)
12 2r9i_A Putative phage capsid p 35.9 58 0.002 25.5 5.0 45 92-148 6-50 (141)
13 1h6g_A Alpha-1 catenin; adhesi 35.5 50 0.0017 26.4 4.7 64 82-151 186-252 (256)
14 3lns_A Benzaldehyde dehydrogen 35.1 64 0.0022 27.3 5.5 75 74-148 16-107 (457)
15 4flb_A Regulation of nuclear P 32.6 19 0.00064 25.4 1.6 35 83-118 94-131 (132)
16 3iwj_A Putative aminoaldehyde 32.4 89 0.003 26.9 6.1 77 75-151 34-131 (503)
17 2guz_B Mitochondrial import in 29.6 38 0.0013 22.5 2.6 35 83-117 19-58 (65)
18 2epj_A Glutamate-1-semialdehyd 27.9 1.8E+02 0.006 22.9 6.6 55 84-138 73-135 (434)
19 4dng_A Uncharacterized aldehyd 27.0 62 0.0021 27.5 4.1 76 75-150 33-114 (485)
20 3hiu_A Uncharacterized protein 26.4 55 0.0019 25.3 3.4 30 121-151 87-120 (166)
21 2bsq_E FITA, trafficking prote 26.3 87 0.003 21.6 4.1 41 85-125 9-49 (77)
22 3icx_A PRE mRNA splicing prote 25.2 2.6E+02 0.0088 23.2 7.4 48 102-149 71-118 (255)
23 3ros_A NAD-dependent aldehyde 25.1 1.3E+02 0.0045 25.8 5.8 73 76-148 16-104 (484)
24 4gwp_A Mediator of RNA polymer 24.6 33 0.0011 26.1 1.8 37 120-158 36-79 (115)
25 3id6_A NOP5, PRE mRNA splicing 24.4 2.6E+02 0.0089 23.2 7.3 73 78-154 167-252 (268)
26 2plg_A TLL0839 protein; hypoth 23.3 8.8 0.0003 30.1 -1.7 57 87-144 87-156 (163)
27 1a4s_A ALDH, betaine aldehyde 23.2 92 0.0031 26.9 4.5 52 75-126 47-104 (503)
28 2xgw_A Peroxide resistance pro 22.6 25 0.00085 27.4 0.8 41 58-98 10-54 (199)
29 2j9u_A VPS28, vacuolar protein 22.3 53 0.0018 23.9 2.4 20 133-152 6-25 (96)
30 1ru0_A DCOH-like protein dcohm 21.8 75 0.0026 22.5 3.1 58 79-142 6-63 (105)
31 3ogh_B Protein YCIE; iron-bind 21.7 85 0.0029 24.4 3.7 31 121-152 90-124 (171)
32 3etf_A Putative succinate-semi 21.6 1.9E+02 0.0066 24.2 6.1 74 76-149 19-108 (462)
33 1yz7_A Probable translation in 20.8 2.1E+02 0.0073 22.4 5.8 61 65-137 38-117 (188)
34 2j9w_A VPS28, VPS28-PROV prote 20.8 63 0.0021 23.7 2.6 20 133-152 9-28 (102)
35 3bey_A Conserved protein O2701 20.2 95 0.0032 20.1 3.2 37 84-120 11-49 (96)
No 1
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=67.13 E-value=3.8 Score=30.60 Aligned_cols=30 Identities=17% Similarity=0.423 Sum_probs=26.0
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 031099 70 NRSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (166)
Q Consensus 70 ~R~fS~d~~hlP~i~Dpei~~afKdLmAasW 100 (166)
.|.|- +.+.||+++|.+|.+-..-|++-.|
T Consensus 10 ~~~~e-tfSyLP~lt~eqI~kQV~Yll~qGw 39 (110)
T 1svd_M 10 SLKYE-TFSYLPPMNAERIRAQIKYAIAQGW 39 (110)
T ss_dssp CCCCS-TTTTSCCCCHHHHHHHHHHHHHTTC
T ss_pred Ccccc-ccccCCCCCHHHHHHHHHHHHHCCC
Confidence 45554 7999999999999999999998766
No 2
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=66.65 E-value=4.3 Score=31.55 Aligned_cols=30 Identities=13% Similarity=0.331 Sum_probs=25.9
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 031099 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (166)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW 100 (166)
|.--+..+.||+++|.+|.+-+.-|++-.|
T Consensus 2 ~~~~etfSyLP~ltdeqI~kQI~Yll~qGw 31 (138)
T 1bwv_S 2 RITQGTFSFLPDLTDEQIKKQIDYMISKKL 31 (138)
T ss_dssp CCCCSTTTTSCCCCHHHHHHHHHHHHHTTC
T ss_pred ceecceeccCCCCCHHHHHHHHHHHHHCCC
Confidence 444467899999999999999999999776
No 3
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=66.28 E-value=4.4 Score=30.19 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=26.3
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 031099 69 CNRSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (166)
Q Consensus 69 ~~R~fS~d~~hlP~i~Dpei~~afKdLmAasW 100 (166)
..|.|- +.+.||+++|.+|.+-..-|++-.|
T Consensus 7 ~~~~~e-tfSyLP~lt~eqI~kQI~Yll~qGw 37 (109)
T 1rbl_M 7 KERRFE-TFSYLPPLSDRQIAAQIEYMIEQGF 37 (109)
T ss_dssp CCCCCS-TTTTSSCCCHHHHHHHHHHHHHHTC
T ss_pred Cccccc-ccccCCCCCHHHHHHHHHHHHHCCC
Confidence 345554 7999999999999999999998765
No 4
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=65.07 E-value=4.1 Score=31.27 Aligned_cols=29 Identities=14% Similarity=0.533 Sum_probs=24.8
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 031099 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (166)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW 100 (166)
|.|- ..+.||+++|.+|.+-+..|++-.|
T Consensus 10 ~~~~-tfSyLP~lt~eqI~kQI~Yll~qGw 38 (128)
T 1wdd_S 10 KKFE-TLSYLPPLTVEDLLKQIEYLLRSKW 38 (128)
T ss_dssp CCCS-TTTTSSCCCHHHHHHHHHHHHHTTC
T ss_pred cccc-ccccCCCCCHHHHHHHHHHHHHCCC
Confidence 4454 7999999999999999999998655
No 5
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=64.10 E-value=4.6 Score=31.40 Aligned_cols=30 Identities=17% Similarity=0.448 Sum_probs=25.8
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 031099 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (166)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW 100 (166)
|.--+..+.||+++|.+|.+-+.-|++-.|
T Consensus 2 ~~~~etfSyLP~ltdeqI~kQI~YlL~qGw 31 (139)
T 1bxn_I 2 RITQGTFSFLPELTDEQITKQLEYCLNQGW 31 (139)
T ss_dssp CCCCSBTTTSSCCCHHHHHHHHHHHHHHTC
T ss_pred ceecceeccCCCCCHHHHHHHHHHHHHCCC
Confidence 444567899999999999999999998766
No 6
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=61.17 E-value=5.3 Score=31.16 Aligned_cols=30 Identities=20% Similarity=0.464 Sum_probs=25.8
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 031099 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (166)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (166)
|.|- +.+.||+++|.+|.+-...|++-.|.
T Consensus 10 ~~~e-tfSyLP~lt~eqI~kQI~YlL~qGw~ 39 (140)
T 1gk8_I 10 KMFE-TFSYLPPLTDEQIAAQVDYIVANGWI 39 (140)
T ss_dssp CCCS-TTTTSSCCCHHHHHHHHHHHHHTTCE
T ss_pred ceec-ccccCCCCCHHHHHHHHHHHHHCCCE
Confidence 4454 79999999999999999999987773
No 7
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=55.54 E-value=8.8 Score=29.85 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=25.9
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 031099 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (166)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (166)
|.=-+..+-||+++|.+|.+-..-|++-.|.
T Consensus 2 ~~t~~tfSyLP~ltd~qI~kQI~YlL~qGw~ 32 (138)
T 4f0h_B 2 RITQGTFSFLPDLTDEQIKKQIDYMISKKLA 32 (138)
T ss_dssp CCCCSTTTTSCCCCHHHHHHHHHHHHHTTCE
T ss_pred cccccccccCCCCCHHHHHHHHHHHHhCCCE
Confidence 3334677899999999999999999998773
No 8
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=51.95 E-value=9.5 Score=27.51 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=32.1
Q ss_pred HHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHH----HHHhhh---hhhhcCC
Q 031099 109 HDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGII----MNIKME---FDDEIGL 158 (166)
Q Consensus 109 ~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGiL----~sLrme---iDDl~Gl 158 (166)
..+-.++..-++.|.|-+++|..|. +++.+|+..| +.||.| +||.+|-
T Consensus 22 ~~as~~i~tls~~k~~~~~~K~~F~--~~t~~fy~tL~~v~v~LrkEIk~LdEnig~ 76 (86)
T 3r84_A 22 QEASQVTFIFGELKRGNESVKPQFE--NHVKQFYERLDKSTTQLRKEIQLLDENVGT 76 (86)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTBTT
T ss_pred HHHHHHHHHhhcccCCcHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3444444444445556577888775 6789999877 467876 6888874
No 9
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=45.75 E-value=16 Score=31.59 Aligned_cols=50 Identities=14% Similarity=0.263 Sum_probs=36.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhH
Q 031099 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAG 124 (166)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAG 124 (166)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+-
T Consensus 49 ~~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 104 (495)
T 1wnd_A 49 DVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAE 104 (495)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888777655 69999954 566667777777666654
No 10
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=43.99 E-value=13 Score=28.12 Aligned_cols=48 Identities=21% Similarity=0.457 Sum_probs=33.7
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHccc-----------------C--CCc-------hhHHHHHHhhhcccC
Q 031099 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADW-----------------G--ELP-------ASVIHDAKSALSRNN 119 (166)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW-----------------~--elp-------~svv~~akkalSk~t 119 (166)
|.| |+.+-||+++|.+|.+-..-|++-.| + .|| +.|+.+++.|++...
T Consensus 8 kkf-eTfSyLP~Lt~eqI~kQV~yll~qGw~~~lE~~d~~~~~~~yW~mWklPmf~~~d~~~Vl~Ele~C~k~~p 81 (118)
T 3zxw_B 8 RRY-ETFSYLPPLSDAQIARQIQYAIDQGYHPCVEFNETSNAEIRYWTMWKLPLFNCTNAQDVLNEVQQCRSEYP 81 (118)
T ss_dssp -------CCSCCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEEESSCCTTCCCHHHHHHHHHHHHHHCT
T ss_pred ccc-cccccCCCCCHHHHHHHHHHHHhCCCeeEEEeccCCCcccCEEeecccCCcCCCCHHHHHHHHHHHHHHCC
Confidence 556 58999999999999999999998655 4 565 567788777776543
No 11
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=40.91 E-value=20 Score=31.01 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=37.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHH
Q 031099 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQ 125 (166)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAGq 125 (166)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+--
T Consensus 51 ~~i~~v~~~~~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 107 (498)
T 4f3x_A 51 AGIIDLAEASHAQIDAAVDAAERAFVGWSQTTPAERSNALLKIADAIEKEADEFAAL 107 (498)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 446678888888998888776554 69999975 5566677777777776643
No 12
>2r9i_A Putative phage capsid protein; putative phage capsid domain, protein structure initi structural genomics; 2.60A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=35.87 E-value=58 Score=25.51 Aligned_cols=45 Identities=40% Similarity=0.461 Sum_probs=30.8
Q ss_pred HHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031099 92 FKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNI 148 (166)
Q Consensus 92 fKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGiL~sL 148 (166)
+|||+|.. +.+...+|.+-|.-|||-.-- .||+|||..-.|+..+
T Consensus 6 lkdllahr-----enlmdsakrarsaitddmdpa-------daaqavenvksiisei 50 (141)
T 2r9i_A 6 LKDLLAHR-----ENLMDSAKRARSAITDDMDPA-------DAAQAVENVKSIISEI 50 (141)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHCCTTSCHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHhhhccCCChH-------HHHHHHHHHHHHHHHH
Confidence 68888863 567778899999889886433 3566666665555443
No 13
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Probab=35.46 E-value=50 Score=26.43 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHcccCCCchhHHHHHHhh---hcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031099 82 VIRDPEIQRAFKDLMAADWGELPASVIHDAKSA---LSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKME 151 (166)
Q Consensus 82 ~i~Dpei~~afKdLmAasW~elp~svv~~akka---lSk~tDDkAGqeaLknvfRAAeAvEeFgGiL~sLrme 151 (166)
.-.||+...-+++-...==+.+.+.+++.||.+ +++|.+|...|..+.+ |.+....-...+|..
T Consensus 186 ~~ed~~~~~~v~~a~~~L~~a~~p~mv~~ak~~~~~~a~np~d~~~~~~~~~------a~~~L~~~v~~vr~a 252 (256)
T 1h6g_A 186 NYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFID------ASRLVYDGIRDIRKA 252 (256)
T ss_dssp TSCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSSCCCCCHHHHHH------HHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 445776555544431110112567899999998 7888888777766654 344444445555544
No 14
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=35.09 E-value=64 Score=27.29 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=45.2
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHH----------HHH-HHHHHHHH
Q 031099 74 SEDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQ----------EVL-KNVFSAAE 136 (166)
Q Consensus 74 S~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAGq----------eaL-knvfRAAe 136 (166)
++.+.++|..+..++..+++..-++ .|..+|.. ++..+...|.++.|+.+-- |+. ..+.++++
T Consensus 16 ~~~i~~v~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~ 95 (457)
T 3lns_A 16 DDDDKHMNYLSPAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKPKDVVDLAEIGAVLH 95 (457)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHHTHHHHHH
T ss_pred CCeeeecCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4577888888888888888777654 69999864 5566667777776665533 333 35666666
Q ss_pred HHHHHHHHHHHH
Q 031099 137 AVEEFIGIIMNI 148 (166)
Q Consensus 137 AvEeFgGiL~sL 148 (166)
.++.|.+.+..+
T Consensus 96 ~~~~~a~~~~~~ 107 (457)
T 3lns_A 96 EIDFALAHLDEW 107 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666555443
No 15
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=32.58 E-value=19 Score=25.40 Aligned_cols=35 Identities=23% Similarity=0.642 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHcccCC---CchhHHHHHHhhhccc
Q 031099 83 IRDPEIQRAFKDLMAADWGE---LPASVIHDAKSALSRN 118 (166)
Q Consensus 83 i~Dpei~~afKdLmAasW~e---lp~svv~~akkalSk~ 118 (166)
+.||+.++.+..|+.+ |.+ .|+++++..+.+|+++
T Consensus 94 ~~~~~~~~kl~~ll~i-W~~r~vf~~~~i~~L~~~L~~s 131 (132)
T 4flb_A 94 VKDPSVSKSVERIFKI-WEDRNVYPEEMIVALREALSTT 131 (132)
T ss_dssp TCSTTTHHHHHHHHHH-HHHHTSSCHHHHHHHHHHHTSC
T ss_pred hCCHHHHHHHHHHHHH-hccCCCcCHHHHHHHHHHHhcc
Confidence 4678888888888876 655 8999999999988763
No 16
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=32.36 E-value=89 Score=26.89 Aligned_cols=77 Identities=12% Similarity=0.252 Sum_probs=55.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc-------ccCCCchh----HHHHHHhhhcccCCchhH----------HHHHHHHHH
Q 031099 75 EDVAHMPVIRDPEIQRAFKDLMAA-------DWGELPAS----VIHDAKSALSRNNDDKAG----------QEVLKNVFS 133 (166)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa-------sW~elp~s----vv~~akkalSk~tDDkAG----------qeaLknvfR 133 (166)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|..+.|+.+- .|+..++.+
T Consensus 34 ~~i~~~~~~~~~~v~~av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~ 113 (503)
T 3iwj_A 34 NIIGDIPAATKEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCGKPLDEAAWDIDD 113 (503)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345667888888999888877665 79999964 556667777777666553 355667888
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 031099 134 AAEAVEEFIGIIMNIKME 151 (166)
Q Consensus 134 AAeAvEeFgGiL~sLrme 151 (166)
+++.++.|.+.+..+..+
T Consensus 114 ~~~~~~~~a~~~~~~~~~ 131 (503)
T 3iwj_A 114 VAGCFEYYADLAEKLDAR 131 (503)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 888888888877766544
No 17
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=29.57 E-value=38 Score=22.47 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHcccCC--Cc---hhHHHHHHhhhcc
Q 031099 83 IRDPEIQRAFKDLMAADWGE--LP---ASVIHDAKSALSR 117 (166)
Q Consensus 83 i~Dpei~~afKdLmAasW~e--lp---~svv~~akkalSk 117 (166)
.++.+|+++++.||..|=-+ -+ .+-|+.||..|.+
T Consensus 19 a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 19 LNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKW 58 (65)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56789999999999998766 55 5667777777755
No 18
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=27.93 E-value=1.8e+02 Score=22.89 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHccc-CCCchhHHHHHHhhhcccC--Cch-----hHHHHHHHHHHHHHHH
Q 031099 84 RDPEIQRAFKDLMAADW-GELPASVIHDAKSALSRNN--DDK-----AGQEVLKNVFSAAEAV 138 (166)
Q Consensus 84 ~Dpei~~afKdLmAasW-~elp~svv~~akkalSk~t--DDk-----AGqeaLknvfRAAeAv 138 (166)
.+|+|.+|+++-+...| ...+.....+..+.|.+-. .+. -|.||+..+.++|.+.
T Consensus 73 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~ 135 (434)
T 2epj_A 73 KHPRVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGY 135 (434)
T ss_dssp TCHHHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 68999999999887643 2345555555655554422 222 3999999999998754
No 19
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=26.98 E-value=62 Score=27.50 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=45.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031099 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNI 148 (166)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGiL~sL 148 (166)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+--..+..=-...|+-.|....+..|
T Consensus 33 ~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~ 112 (485)
T 4dng_A 33 SVITTASLATGKQLEDAFDIAQKAQKEWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTIIKSTIELEQTIAIL 112 (485)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 345667888888888888877654 59999975 556667777777776664333332222233333444444444
Q ss_pred hh
Q 031099 149 KM 150 (166)
Q Consensus 149 rm 150 (166)
|-
T Consensus 113 ~~ 114 (485)
T 4dng_A 113 DE 114 (485)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 20
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Probab=26.38 E-value=55 Score=25.26 Aligned_cols=30 Identities=20% Similarity=0.100 Sum_probs=21.5
Q ss_pred chhHHHHHHHHHHHHHHHHHH----HHHHHHHhhh
Q 031099 121 DKAGQEVLKNVFSAAEAVEEF----IGIIMNIKME 151 (166)
Q Consensus 121 DkAGqeaLknvfRAAeAvEeF----gGiL~sLrme 151 (166)
..++.+++++.+ ||++||-| +|+|.++=..
T Consensus 87 ~~~~d~v~d~~l-aaq~vEHyEIA~YgtL~a~A~~ 120 (166)
T 3hiu_A 87 SMMTDEVTKGVG-ISYAFEHLEIASYRALVVAARS 120 (166)
T ss_dssp ---CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 345668899988 99999987 6888776443
No 21
>2bsq_E FITA, trafficking protein A; transcription, transcription regulation complex, PIN domain, ribbon-helix-helix, DNA binding; HET: 5IU; 3.0A {Neisseria gonorrhoeae} SCOP: a.43.1.8 PDB: 2h1o_E*
Probab=26.27 E-value=87 Score=21.59 Aligned_cols=41 Identities=12% Similarity=-0.021 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHH
Q 031099 85 DPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQ 125 (166)
Q Consensus 85 Dpei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGq 125 (166)
|++++.++|..=+.+=--+.+.+.....+++...+..+-|+
T Consensus 9 pd~~~~~Lk~rAa~~GrSle~e~r~iL~~a~~~~~~~~l~~ 49 (77)
T 2bsq_E 9 SEATHNAIKFRARAAGRSTEAEIRLILDNIAKAQQTVRLGS 49 (77)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCcccccHHH
Confidence 57888888888888877788888888888876544433443
No 22
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=25.16 E-value=2.6e+02 Score=23.16 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=34.2
Q ss_pred CCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031099 102 ELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIK 149 (166)
Q Consensus 102 elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGiL~sLr 149 (166)
.+|+.++..+..+.+.+.--.-..+-|.++..+|+-|.+..-.-..|.
T Consensus 71 ~l~~~~~~~i~~aa~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~ 118 (255)
T 3icx_A 71 GFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLN 118 (255)
T ss_dssp TCCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888887777776655544556679999999999987665444443
No 23
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=25.09 E-value=1.3e+02 Score=25.83 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=50.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhH----------HHHHHHHHHHHHHHH
Q 031099 76 DVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAG----------QEVLKNVFSAAEAVE 139 (166)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAG----------qeaLknvfRAAeAvE 139 (166)
-+..+|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+- .|+..++.++++.++
T Consensus 16 ~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~ 95 (484)
T 3ros_A 16 AFASYDNPTSKQIDEAINLAHALYKKWRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKLLSESKEEVELCVSICN 95 (484)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 45678888888888888776654 69999875 566667777777776654 344556667777777
Q ss_pred HHHHHHHHH
Q 031099 140 EFIGIIMNI 148 (166)
Q Consensus 140 eFgGiL~sL 148 (166)
.+.+.+..+
T Consensus 96 ~~a~~~~~~ 104 (484)
T 3ros_A 96 YYADHGPEM 104 (484)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665544
No 24
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=24.56 E-value=33 Score=26.10 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=25.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH----HHHhhhh---hhhcCC
Q 031099 120 DDKAGQEVLKNVFSAAEAVEEFIGII----MNIKMEF---DDEIGL 158 (166)
Q Consensus 120 DDkAGqeaLknvfRAAeAvEeFgGiL----~sLrmei---DDl~Gl 158 (166)
+-|-|.+.+|.-|. +.+.+|+..| ++||.|| ||.+|-
T Consensus 36 elK~g~~~~K~qF~--~~~~~fY~~Ls~~a~~LRkEIK~lDeNiG~ 79 (115)
T 4gwp_A 36 ELKRGNESVKPQFE--NHVKQFYERLDKSTTQLRKEIQLLDENVGT 79 (115)
T ss_dssp HHTTTCGGGHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhccCccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 33445556666664 6788999977 5789885 888873
No 25
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=24.41 E-value=2.6e+02 Score=23.16 Aligned_cols=73 Identities=14% Similarity=0.209 Sum_probs=50.4
Q ss_pred CCCCCC----CCHHHHHHHHHHHHc-------ccC--CCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHH
Q 031099 78 AHMPVI----RDPEIQRAFKDLMAA-------DWG--ELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGI 144 (166)
Q Consensus 78 ~hlP~i----~Dpei~~afKdLmAa-------sW~--elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGi 144 (166)
.|+|+. +||..+-.+=.++.- +.. .||+.++..++.|-+.+.--.-..+-|.|+-.+|+-|.+..
T Consensus 167 ~hFPEL~kiV~d~~~Yak~V~~ig~r~~l~~~~l~~i~l~~~~~~~I~~aA~~SmG~~ise~DL~~I~~~a~~v~~L~-- 244 (268)
T 3id6_A 167 IHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLY-- 244 (268)
T ss_dssp TTCTTHHHHCCCHHHHHHHHHHHCSTTSCCHHHHGGGTCCHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHH--
T ss_pred ccCccHHHhccCHHHHHHHHHHhCCcccCCcccHhhcCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH--
Confidence 567764 677666555444321 222 36999999999988887777777778999999999998754
Q ss_pred HHHHhhhhhh
Q 031099 145 IMNIKMEFDD 154 (166)
Q Consensus 145 L~sLrmeiDD 154 (166)
..|..|-|
T Consensus 245 --e~R~~L~~ 252 (268)
T 3id6_A 245 --NIRRNLNN 252 (268)
T ss_dssp --HHHHHHHH
T ss_pred --HHHHHHHH
Confidence 44444433
No 26
>2plg_A TLL0839 protein; hypothetical, uncharacterized, DUF1821, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 2.60A {Synechococcus elongatus} SCOP: d.198.1.2
Probab=23.32 E-value=8.8 Score=30.12 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcccCCCch--------hHHHHHHhhhcccCCchhHHHHHHHHHHHHH-----HHHHHHHH
Q 031099 87 EIQRAFKDLMAADWGELPA--------SVIHDAKSALSRNNDDKAGQEVLKNVFSAAE-----AVEEFIGI 144 (166)
Q Consensus 87 ei~~afKdLmAasW~elp~--------svv~~akkalSk~tDDkAGqeaLknvfRAAe-----AvEeFgGi 144 (166)
+.+.-++.||-+||+..=+ .|+-.....++. =|..-.+.|+++|+..|. -++||||.
T Consensus 87 ~~~~l~~~LLE~N~~~t~~arFaI~~n~V~~v~~r~ls~-Ld~~E~~~aIt~V~~lAD~~Dd~L~~~fg~~ 156 (163)
T 2plg_A 87 DELALYRKLLTLNWLTTFEAHFAIAEEQVQVVASRTLGG-ITAGEISRLITIVATLADDYDDALRAEFKGE 156 (163)
T ss_dssp THHHHHHHHHHHTTTTTTTCEEEEETTEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHhccccccceEEEEECCEEEEEEEEEccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6888899999999995433 111111112222 344556888999998885 47888884
No 27
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=23.18 E-value=92 Score=26.87 Aligned_cols=52 Identities=21% Similarity=0.338 Sum_probs=37.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHHH
Q 031099 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQE 126 (166)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAGqe 126 (166)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+--.
T Consensus 47 ~~i~~~~~~~~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 104 (503)
T 1a4s_A 47 RVLCQMVPCGAEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLE 104 (503)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888898888877665 69999964 56666777777776665543
No 28
>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A {Streptococcus pyogenes}
Probab=22.56 E-value=25 Score=27.39 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=20.5
Q ss_pred CCCCcccc----cccccccccccCCCCCCCCCHHHHHHHHHHHHc
Q 031099 58 DCRSSLVM----SIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAA 98 (166)
Q Consensus 58 d~~~~~s~----~~g~~R~fS~d~~hlP~i~Dpei~~afKdLmAa 98 (166)
=+|.||+| -...++....|+..+++-.++.+-..+..++|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~LN~~LAd 54 (199)
T 2xgw_A 10 MGRDPNSMTNTLVENIYASVTHNISKKEASKNEKTKAVLNQAVAD 54 (199)
T ss_dssp ----------CHHHHHHHHHHHC------CTTHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHhcCcCCCCcccHHHHHHHHHHHHHH
Confidence 36788998 445556666789999999999999988888764
No 29
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=22.29 E-value=53 Score=23.91 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 031099 133 SAAEAVEEFIGIIMNIKMEF 152 (166)
Q Consensus 133 RAAeAvEeFgGiL~sLrmei 152 (166)
-.||+|+-|..+.++||+.+
T Consensus 6 ~iAe~~~~FIT~mDaLKL~~ 25 (96)
T 2j9u_A 6 YVAEATGNFITVMDALKLNY 25 (96)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 36999999999999999864
No 30
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=21.76 E-value=75 Score=22.48 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHH
Q 031099 79 HMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFI 142 (166)
Q Consensus 79 hlP~i~Dpei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFg 142 (166)
..|.+++.||+..+++|-...|...++. .+|.+.=.=+-=.+++.=+=+.|+.+|+.+
T Consensus 6 ~~~~Ls~~ei~~~L~~l~~~gW~~~~~~------~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~ 63 (105)
T 1ru0_A 6 DAQWLTAEERDQLIPGLKAAGWSELSER------DAIYKEFSFKNFNQAFGFMSRVALQAEKMN 63 (105)
T ss_dssp CCSBCCHHHHHHHHHHHHHTTCEECSSS------SCEEEEEECSSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhCCCCCCeEECCC------CeEEEEEEeCCHHHHHHHHHHHHHHHHHhC
Confidence 3466899999999999988899876543 256553322223455555556666666643
No 31
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=21.75 E-value=85 Score=24.37 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=21.3
Q ss_pred chhHHHHHHHHHHHHHHHHHH----HHHHHHHhhhh
Q 031099 121 DKAGQEVLKNVFSAAEAVEEF----IGIIMNIKMEF 152 (166)
Q Consensus 121 DkAGqeaLknvfRAAeAvEeF----gGiL~sLrmei 152 (166)
..++.+++++.+ +|++||-| ||+|.++=..+
T Consensus 90 ~~~~d~v~d~~l-aaq~vEHyEIA~YgtL~a~A~~l 124 (171)
T 3ogh_B 90 IFPSDEIVKGSI-SGYVFEQFEIACYTSLLAAAKNA 124 (171)
T ss_dssp ----CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHc
Confidence 345667899988 89999987 68888764443
No 32
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=21.59 E-value=1.9e+02 Score=24.25 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=51.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhH----------HHHHHHHHHHHHHHH
Q 031099 76 DVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAG----------QEVLKNVFSAAEAVE 139 (166)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAG----------qeaLknvfRAAeAvE 139 (166)
-+.++|..+..++..+++..-++ .|..+|.. ++..+...|.++.|+.+- .|+..++.++++.++
T Consensus 19 ~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~ 98 (462)
T 3etf_A 19 TLAAMPWANAQEIEHALSLAASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPIKQARAEVTKSAALCD 98 (462)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 45567888888888888777654 69999864 555666667766665442 355667888888888
Q ss_pred HHHHHHHHHh
Q 031099 140 EFIGIIMNIK 149 (166)
Q Consensus 140 eFgGiL~sLr 149 (166)
.+.+.+..+.
T Consensus 99 ~~a~~~~~~~ 108 (462)
T 3etf_A 99 WYAEHGPAML 108 (462)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHhHHHhc
Confidence 8877766554
No 33
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=20.78 E-value=2.1e+02 Score=22.39 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=41.3
Q ss_pred ccccccccccccCCCCCCCCCHHHHHHHHHHHH---cccCCC-chhHHHHHHhhhccc---------------CCchhHH
Q 031099 65 MSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMA---ADWGEL-PASVIHDAKSALSRN---------------NDDKAGQ 125 (166)
Q Consensus 65 ~~~g~~R~fS~d~~hlP~i~Dpei~~afKdLmA---asW~el-p~svv~~akkalSk~---------------tDDkAGq 125 (166)
++|-..|-|- | .+.|||+... .-|+++ |+.+.......++++ .-+..|-
T Consensus 38 i~w~L~~kyG----~--------~ydaFk~av~~~~~vl~~lip~~~~~~L~~~i~~~l~~q~vkIra~ieltc~~~dGI 105 (188)
T 1yz7_A 38 VWVPLEEEWG----E--------VYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPTVTIDAEFEITVPKPNGV 105 (188)
T ss_dssp THHHHHHHHS----S--------HHHHHHHHHHHCGGGSBTTBCTTHHHHHHHHHHHHSCCCCEEEEEEEEEECCSTTHH
T ss_pred HHHHHHHHhC----c--------HHHHHHHHHhcChHHHHHhCCHHHHHHHHHHHHHhCCCCceEEEEEEEEEeCCCchH
Confidence 3466667664 2 7899988776 457774 765555554444442 3356799
Q ss_pred HHHHHHHHHHHH
Q 031099 126 EVLKNVFSAAEA 137 (166)
Q Consensus 126 eaLknvfRAAeA 137 (166)
|++|.++++|++
T Consensus 106 e~IK~AL~~a~~ 117 (188)
T 1yz7_A 106 EIIKEALIRARD 117 (188)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 34
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=20.75 E-value=63 Score=23.74 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 031099 133 SAAEAVEEFIGIIMNIKMEF 152 (166)
Q Consensus 133 RAAeAvEeFgGiL~sLrmei 152 (166)
-.||+|+-|..+.++||+.+
T Consensus 9 ~IAe~v~~FIT~mDaLKLn~ 28 (102)
T 2j9w_A 9 CIADIVSLFITVMDKLRLEI 28 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 46999999999999999864
No 35
>3bey_A Conserved protein O27018; TT217, NESG, structural genomics, PSI-2, PROT structure initiative; 2.40A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=20.15 E-value=95 Score=20.12 Aligned_cols=37 Identities=24% Similarity=0.191 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHccc--CCCchhHHHHHHhhhcccCC
Q 031099 84 RDPEIQRAFKDLMAADW--GELPASVIHDAKSALSRNND 120 (166)
Q Consensus 84 ~Dpei~~afKdLmAasW--~elp~svv~~akkalSk~tD 120 (166)
.+|++.++|.+|...-| ..||+.+.+-+.-++|..+.
T Consensus 11 ~~P~~~~~~~~l~~~~~~~~~L~~~~reLi~l~vs~~ng 49 (96)
T 3bey_A 11 ELPEVAESFKNFREAVRSEGKLTEREKLLISVACSVAVR 49 (96)
T ss_dssp GCHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHTT
T ss_pred HCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcC
Confidence 47999999999988877 57999998888877776544
Done!