BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031101
MMKSKHSHNRFVRFVMLPIRALGKARDFYVRSMINCAEGRTYGQPMGGTLPKSFSARSAL
SSESDDYGELVRAASVRSMGHLNEIDMLLKQHMQMRSSSQQLPQQQLGSNGKARFPKSCS
VGMAGFMGRIEEEKPGDLGEDGSVHTKTKSSDSVYPRSRSVAVAF

High Scoring Gene Products

Symbol, full name Information P value
AT1G58420 protein from Arabidopsis thaliana 7.8e-23
AT1G10140 protein from Arabidopsis thaliana 1.7e-20

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031101
        (165 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2037670 - symbol:AT1G58420 "AT1G58420" species...   264  7.8e-23   1
TAIR|locus:2012833 - symbol:AT1G10140 "AT1G10140" species...   242  1.7e-20   1


>TAIR|locus:2037670 [details] [associations]
            symbol:AT1G58420 "AT1G58420" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 EMBL:AC082643 EMBL:JN389445
            EMBL:BT024830 IPI:IPI00524866 PIR:A96618 RefSeq:NP_564733.1
            UniGene:At.42952 STRING:Q9C647 EnsemblPlants:AT1G58420.1
            GeneID:842211 KEGG:ath:AT1G58420 TAIR:At1g58420 InParanoid:Q9C647
            OMA:RTHYSSA PhylomeDB:Q9C647 ProtClustDB:CLSN2687752
            Genevestigator:Q9C647 InterPro:IPR016972 PIRSF:PIRSF031279
            Uniprot:Q9C647
        Length = 179

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 69/178 (38%), Positives = 87/178 (48%)

Query:     1 MMKSKHSHNRFVRFVMLPIRALGKARDFYVRSMINCAEGRTYGQPMGGT---LPKXXXXX 57
             M K     NRF+R V +P++ L KARD Y+RS+  CA    Y   +       P+     
Sbjct:     1 MGKRGQKQNRFLRIVTMPLKVLCKARDLYMRSITGCAARTHYSSAVDAASVPFPRSRSTS 60

Query:    58 XXXXXXX------------DDYGELVRAASVRSMGHLNEIDMLLKQHMQMRXXXXXXXXX 105
                                DDY EL+RAASVRS+GH NEIDM+++Q  Q +         
Sbjct:    61 SAFSSSASSRRRSSDFTFDDDYSELLRAASVRSLGHKNEIDMIIQQQQQQQQQRQENRVA 120

Query:   106 XXXXNGKARFPKSCSVGMAGFMGRIEEEKPGDLGEDGSVHTKTKSSDSVYPRSRSVAV 163
                   K   PKS SVGM   M RI+EE      E+GSV  + K SD +YPRSRS AV
Sbjct:   121 MGAVTVKGGLPKSSSVGMT--MARIDEEDE----EEGSVKNQKKGSDFLYPRSRSHAV 172


>TAIR|locus:2012833 [details] [associations]
            symbol:AT1G10140 "AT1G10140" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005886 "plasma membrane"
            evidence=IDA] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005886
            EMBL:AC005489 ProtClustDB:CLSN2687752 InterPro:IPR016972
            PIRSF:PIRSF031279 UniGene:At.10161 EMBL:AY086326 EMBL:BT025763
            EMBL:AK230130 IPI:IPI00540277 RefSeq:NP_563861.1 UniGene:At.43936
            PaxDb:Q9SY56 PRIDE:Q9SY56 EnsemblPlants:AT1G10140.1 GeneID:837551
            KEGG:ath:AT1G10140 TAIR:At1g10140 eggNOG:NOG270998
            HOGENOM:HOG000238305 InParanoid:Q9SY56 OMA:CAARTQY PhylomeDB:Q9SY56
            Genevestigator:Q9SY56 Uniprot:Q9SY56
        Length = 167

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 67/174 (38%), Positives = 88/174 (50%)

Query:     5 KHSHNRFVRFVMLPIRALGKARDFYVRSMINCAEGRTYGQP--MGGTLPKXXXXXXXXXX 62
             K + ++F+R +  P+RALGKARDFYVRS+  CA    Y     +    P+          
Sbjct:     2 KQNQSKFLRIISTPLRALGKARDFYVRSITGCAARTQYSSSASVSAPFPRSRSSSSAAFS 61

Query:    63 XX------------DDYGELVRAASVRSMGHLNEIDMLLKQHMQMRXXXXXXXXXXXXXN 110
                           +DY ELVRAASVRS+GH NEIDML+++ +Q +              
Sbjct:    62 SSASSRRTTDFGIDEDYSELVRAASVRSLGHKNEIDMLIQEKLQQQKQQK---------- 111

Query:   111 GKARFPKSCSVGMAGFMGRIEEEKPGDLGEDGSVHTKTKS-SDSVYPRSRSVAV 163
              +   PKS S GMA    RIEEE+  + G       KTK  SD +YPRS+S AV
Sbjct:   112 -QGGLPKSSSAGMA----RIEEEEETEEGSVNPKVKKTKKVSDLLYPRSKSYAV 160


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      165       140   0.00091  102 3  11 22  0.41    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  556 (59 KB)
  Total size of DFA:  124 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.34u 0.16s 10.50t   Elapsed:  00:00:00
  Total cpu time:  10.34u 0.16s 10.50t   Elapsed:  00:00:00
  Start:  Fri May 10 11:06:56 2013   End:  Fri May 10 11:06:56 2013

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