BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031101
         (165 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase
           At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1
          Length = 1010

 Score = 32.0 bits (71), Expect = 2.0,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 16/142 (11%)

Query: 12  VRFVMLPIRALGK--ARDF-YVRSMINCAEGRTYG---QPMGGTLPKSFSARSALSSESD 65
           ++ + L   +LG   +RD  ++ S+ NC +  T G     +GG LP S +  SA     D
Sbjct: 308 LKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLD 367

Query: 66  DYGELVRAASVRSMGHL-NEIDMLLKQHMQMRSSSQQLPQQQLGSNGKAR----FPKSCS 120
             G L+  +    +G+L N   ++L Q+M     S  LP   LG     R    F    S
Sbjct: 368 LGGTLISGSIPYDIGNLINLQKLILDQNML----SGPLP-TSLGKLLNLRYLSLFSNRLS 422

Query: 121 VGMAGFMGRIEEEKPGDLGEDG 142
            G+  F+G +   +  DL  +G
Sbjct: 423 GGIPAFIGNMTMLETLDLSNNG 444


>sp|P54254|ATX1_MOUSE Ataxin-1 OS=Mus musculus GN=Atxn1 PE=1 SV=2
          Length = 791

 Score = 30.4 bits (67), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 105 QQLGSNGKARFPKSCSVGMAGFMGRIEEEKP 135
           Q L  NG+ +FP+   +  A F+ +IE  KP
Sbjct: 712 QVLSENGELKFPEKIGLPAAPFLSKIEPSKP 742


>sp|P54253|ATX1_HUMAN Ataxin-1 OS=Homo sapiens GN=ATXN1 PE=1 SV=2
          Length = 815

 Score = 30.0 bits (66), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 105 QQLGSNGKARFPKSCSVGMAGFMGRIEEEKPG 136
           Q L  NG+ +FP+   +  A F+ +IE  KP 
Sbjct: 736 QMLSENGELKFPEKMGLPAAPFLTKIEPSKPA 767


>sp|C5K110|ARGJ_AJEDS Arginine biosynthesis bifunctional protein ArgJ, mitochondrial
          OS=Ajellomyces dermatitidis (strain SLH14081)
          GN=BDBG_08504 PE=3 SV=1
          Length = 473

 Score = 30.0 bits (66), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 2  MKSKHSHNRFVRFVMLPIRALGKARDFYVRSMINCAEGRTYGQPMGGTLPKSF 54
          MKS  S +    FV LP  +LG+ R + +   ++    +    P  GT PK F
Sbjct: 1  MKSTQSFSAVAGFVRLPKSSLGQVRYYSILKDMSIPASKQKFIPSSGTYPKGF 53


>sp|C5GXZ4|ARGJ_AJEDR Arginine biosynthesis bifunctional protein ArgJ, mitochondrial
          OS=Ajellomyces dermatitidis (strain ER-3 / ATCC
          MYA-2586) GN=BDCG_09234 PE=3 SV=1
          Length = 473

 Score = 30.0 bits (66), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 2  MKSKHSHNRFVRFVMLPIRALGKARDFYVRSMINCAEGRTYGQPMGGTLPKSF 54
          MKS  S +    FV LP  +LG+ R + +   ++    +    P  GT PK F
Sbjct: 1  MKSTQSFSAVAGFVRLPKSSLGQVRYYSILKDMSIPASKQKFIPSSGTYPKGF 53


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.130    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,574,152
Number of Sequences: 539616
Number of extensions: 2093906
Number of successful extensions: 4808
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4802
Number of HSP's gapped (non-prelim): 17
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)