Query 031101
Match_columns 165
No_of_seqs 57 out of 59
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 09:14:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0165 ArgH Argininosuccinate 56.8 9.7 0.00021 36.0 2.8 63 24-86 231-308 (459)
2 COG4908 Uncharacterized protei 53.8 7.3 0.00016 36.6 1.5 17 126-142 363-379 (439)
3 PF05760 IER: Immediate early 21.8 46 0.001 29.9 1.2 28 6-34 24-52 (300)
4 PHA02970 hypothetical protein; 19.7 47 0.001 26.0 0.6 10 130-139 12-21 (115)
5 PF12180 EABR: TSG101 and ALIX 16.7 91 0.002 19.9 1.3 12 24-35 19-30 (35)
6 PF08134 cIII: cIII protein fa 12.3 1.5E+02 0.0033 19.6 1.5 14 64-77 23-36 (44)
7 PF07657 MNNL: N terminus of N 11.7 1.6E+02 0.0034 21.3 1.6 13 127-139 50-62 (77)
8 PF08630 Dfp1_Him1_M: Dfp1/Him 10.8 90 0.002 24.6 0.1 11 21-31 3-13 (125)
9 COG3460 Uncharacterized enzyme 10.4 1.1E+02 0.0024 24.1 0.5 23 17-39 35-57 (117)
10 TIGR02157 PA_CoA_Oxy2 phenylac 10.2 1E+02 0.0023 23.2 0.3 21 17-37 26-46 (90)
No 1
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=56.82 E-value=9.7 Score=35.96 Aligned_cols=63 Identities=29% Similarity=0.409 Sum_probs=46.9
Q ss_pred hhhhHHHHhHHHhcCCCC-----------cCCCCCC--CCCceeeccCCC--CCCCchHHHHHHHHhhhccCcchhHH
Q 031101 24 KARDFYVRSMINCAEGRT-----------YGQPMGG--TLPKSFSARSAL--SSESDDYGELVRAASVRSMGHLNEID 86 (165)
Q Consensus 24 kARD~YVrsmt~Ca~~~~-----------~G~P~~~--~lPrSfS~~s~r--~~~ddd~~ELvRAAS~R~~g~~~eid 86 (165)
-.|||=+-.+-.|+.-+- |-+|-.+ +||.+|+..||= ---+-|+-||||+-+.|..|+..-+-
T Consensus 231 s~Rdf~le~l~~~s~~~~~LSRlaedlI~wss~EfgfI~l~D~~sTGSSIMPQKKNPD~~ELiRgk~grv~G~l~~ll 308 (459)
T COG0165 231 SDRDFILEFLSAAALIMVHLSRLAEDLILWSSPEFGFIELPDEFSTGSSIMPQKKNPDVLELIRGKAGRVIGALTGLL 308 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCceEeCCcccccccccCCCCCCCcHHHHHHHhhhhhHHHHHHHH
Confidence 467888777777665532 4556444 799999999876 34588999999999999998775544
No 2
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=53.80 E-value=7.3 Score=36.65 Aligned_cols=17 Identities=41% Similarity=0.432 Sum_probs=14.0
Q ss_pred ceeeccCCCCCCcCCCC
Q 031101 126 FMGRIEEEKPGDLGEDG 142 (165)
Q Consensus 126 ~mGRIDEd~Pc~F~~~~ 142 (165)
-+|+|||+.||.+|+.+
T Consensus 363 NiG~id~~~~~f~g~~~ 379 (439)
T COG4908 363 NIGIIDEEVPPFGGEAE 379 (439)
T ss_pred cccccccccCCcCceec
Confidence 49999999999887433
No 3
>PF05760 IER: Immediate early response protein (IER); InterPro: IPR008653 This family consists of several eukaryotic immediate early response (IER) 2 and 5 proteins. The role of IER5 is unclear although it play an important role in mediating the cellular response to mitogenic signals. Again, little is known about the function of IER2 although it is thought to play a role in mediating the cellular responses to a variety of extracellular signals [, ].
Probab=21.84 E-value=46 Score=29.89 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=19.2
Q ss_pred ccCC-chhhhhhhHHHHHhhhhhHHHHhHH
Q 031101 6 HSHN-RFVRFVMLPIRALGKARDFYVRSMI 34 (165)
Q Consensus 6 ~k~s-kl~ri~~aP~R~L~kARD~YVrsmt 34 (165)
|+.+ ||-|=|..- =||+.|||+|+.-..
T Consensus 24 QRGG~kLHrnLlvs-~vlrsAR~~y~s~~~ 52 (300)
T PF05760_consen 24 QRGGIKLHRNLLVS-LVLRSARQVYLSAKY 52 (300)
T ss_pred hccchhHHHHHHHH-HHHHHHHHHHHHhhh
Confidence 4444 666555443 489999999998765
No 4
>PHA02970 hypothetical protein; Provisional
Probab=19.65 E-value=47 Score=25.99 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=8.7
Q ss_pred ccCCCCCCcC
Q 031101 130 IEEEKPGDLG 139 (165)
Q Consensus 130 IDEd~Pc~F~ 139 (165)
-|.++||+||
T Consensus 12 ydgispCYFG 21 (115)
T PHA02970 12 YDGISPCYFG 21 (115)
T ss_pred cCCCCCceec
Confidence 5778999998
No 5
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=16.69 E-value=91 Score=19.87 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=9.4
Q ss_pred hhhhHHHHhHHH
Q 031101 24 KARDFYVRSMIN 35 (165)
Q Consensus 24 kARD~YVrsmt~ 35 (165)
--||-||+++.+
T Consensus 19 ~qRE~YV~~L~~ 30 (35)
T PF12180_consen 19 QQREAYVRGLLA 30 (35)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH
Confidence 458999999754
No 6
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=12.29 E-value=1.5e+02 Score=19.59 Aligned_cols=14 Identities=36% Similarity=0.413 Sum_probs=11.6
Q ss_pred CchHHHHHHHHhhh
Q 031101 64 SDDYGELVRAASVR 77 (165)
Q Consensus 64 ddd~~ELvRAAS~R 77 (165)
...++.|||||..+
T Consensus 23 skr~rrLIRaa~k~ 36 (44)
T PF08134_consen 23 SKRIRRLIRAARKQ 36 (44)
T ss_pred HHHHHHHHHHHHHH
Confidence 45789999999876
No 7
>PF07657 MNNL: N terminus of Notch ligand; InterPro: IPR011651 This entry represents a region of conserved sequence at the N terminus of several Notch ligand proteins.; GO: 0007219 Notch signaling pathway, 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=11.69 E-value=1.6e+02 Score=21.34 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=11.3
Q ss_pred eeeccCCCCCCcC
Q 031101 127 MGRIEEEKPGDLG 139 (165)
Q Consensus 127 mGRIDEd~Pc~F~ 139 (165)
-..||.+.||-||
T Consensus 50 Q~~v~~~~pCtfG 62 (77)
T PF07657_consen 50 QAVVSPEGPCTFG 62 (77)
T ss_pred cccCCCCCCCCCC
Confidence 4679999999998
No 8
>PF08630 Dfp1_Him1_M: Dfp1/Him1, central region; InterPro: IPR013939 This region, together with the C-terminal zinc finger (IPR006572 from INTERPRO) is essential for the mitotic and kinase activation functions of Dfp1/Him1 []. ; PDB: 3OQ0_J 3OQ4_D 3QBZ_A.
Probab=10.77 E-value=90 Score=24.57 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=8.5
Q ss_pred HHhhhhhHHHH
Q 031101 21 ALGKARDFYVR 31 (165)
Q Consensus 21 ~L~kARD~YVr 31 (165)
||.|||++|||
T Consensus 3 iL~rA~~~~mK 13 (125)
T PF08630_consen 3 ILHRAREMGMK 13 (125)
T ss_dssp HHHHHHHTT-E
T ss_pred HHHHHHHcCCc
Confidence 68899998886
No 9
>COG3460 Uncharacterized enzyme of phenylacetate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=10.45 E-value=1.1e+02 Score=24.15 Aligned_cols=23 Identities=26% Similarity=0.063 Sum_probs=18.0
Q ss_pred hHHHHHhhhhhHHHHhHHHhcCC
Q 031101 17 LPIRALGKARDFYVRSMINCAEG 39 (165)
Q Consensus 17 aP~R~L~kARD~YVrsmt~Ca~~ 39 (165)
-|--+|-.|||.|+|---+|+=-
T Consensus 35 d~emAL~~Ardvf~RR~~~vsiW 57 (117)
T COG3460 35 DEEMALMMARDVFTRREEGVSIW 57 (117)
T ss_pred CHHHHHHHHHHHhhccCcCceEE
Confidence 35668999999999977776644
No 10
>TIGR02157 PA_CoA_Oxy2 phenylacetate-CoA oxygenase, PaaH subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=10.23 E-value=1e+02 Score=23.24 Aligned_cols=21 Identities=33% Similarity=0.167 Sum_probs=15.3
Q ss_pred hHHHHHhhhhhHHHHhHHHhc
Q 031101 17 LPIRALGKARDFYVRSMINCA 37 (165)
Q Consensus 17 aP~R~L~kARD~YVrsmt~Ca 37 (165)
-|=-+|.-|||.|.|-.-+++
T Consensus 26 d~e~Al~~Ard~y~RR~e~vs 46 (90)
T TIGR02157 26 DEEMALMMARDNYTRREEGVS 46 (90)
T ss_pred CHHHHHHHHHHHhccccCCcE
Confidence 345689999999998554443
Done!