Query 031101
Match_columns 165
No_of_seqs 57 out of 59
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 14:33:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3esi_A Uncharacterized protein 29.7 15 0.0005 27.6 0.6 13 125-137 117-129 (129)
2 4gqr_A Pancreatic alpha-amylas 22.5 34 0.0012 28.3 1.7 30 50-80 63-92 (496)
3 3oq4_A DBF4, protein DNA52; DD 7.8 79 0.0027 24.3 -0.2 13 19-31 72-84 (134)
4 3tq7_B Microtubule-associated 7.8 2.7E+02 0.0091 19.5 2.6 22 14-35 12-33 (82)
5 3oq0_A DBF4, protein DNA52; DD 7.8 80 0.0027 24.7 -0.2 12 20-31 90-101 (151)
6 3egr_A Phenylacetate-COA oxyge 7.1 91 0.0031 22.7 -0.1 19 18-36 33-51 (96)
7 4e61_A Protein BIM1; EB1-like 7.1 2.9E+02 0.0098 20.3 2.6 21 15-35 30-50 (106)
8 1g94_A Alpha-amylase; beta-alp 7.0 1.8E+02 0.0061 24.6 1.6 28 52-80 53-80 (448)
9 1kn7_A RCK4, voltage-gated pot 6.1 1.4E+02 0.0049 20.8 0.5 13 34-46 14-26 (78)
10 2v0p_A TAP42, type 2A phosphat 6.0 2.9E+02 0.0098 22.1 2.3 23 18-40 100-122 (234)
No 1
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=29.66 E-value=15 Score=27.60 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=6.6
Q ss_pred cceeeccCCCCCC
Q 031101 125 GFMGRIEEEKPGD 137 (165)
Q Consensus 125 ~~mGRIDEd~Pc~ 137 (165)
+..++||+|.||.
T Consensus 117 i~l~~~~~~~~~~ 129 (129)
T 3esi_A 117 IKLTPIMEDNPCQ 129 (129)
T ss_dssp EEEEETTC-----
T ss_pred EEEEEeCCCCCCC
Confidence 3579999999993
No 2
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=22.50 E-value=34 Score=28.32 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=24.3
Q ss_pred CCceeeccCCCCCCCchHHHHHHHHhhhccC
Q 031101 50 LPKSFSARSALSSESDDYGELVRAASVRSMG 80 (165)
Q Consensus 50 lPrSfS~~s~r~~~ddd~~ELvRAAS~R~~g 80 (165)
-|.+|.+++ +-++.|||++||.+|=+|++.
T Consensus 63 ~~~dy~i~~-~~Gt~~df~~lv~~aH~~Gi~ 92 (496)
T 4gqr_A 63 QPVSYKLCT-RSGNEDEFRNMVTRCNNVGVR 92 (496)
T ss_dssp SBSCSCSCB-TTBCHHHHHHHHHHHHHTTCE
T ss_pred CccCceeCC-CCCCHHHHHHHHHHHHHCCCE
Confidence 466787754 678899999999999999654
No 3
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=7.84 E-value=79 Score=24.28 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=10.6
Q ss_pred HHHHhhhhhHHHH
Q 031101 19 IRALGKARDFYVR 31 (165)
Q Consensus 19 ~R~L~kARD~YVr 31 (165)
-=||.|||++|||
T Consensus 72 ~DIL~rAr~~~mK 84 (134)
T 3oq4_A 72 TDILSRAKKNYMK 84 (134)
T ss_dssp TSHHHHHHHTTCE
T ss_pred chHHHHHHHcCCe
Confidence 3489999999986
No 4
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=7.78 E-value=2.7e+02 Score=19.47 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=17.1
Q ss_pred hhhhHHHHHhhhhhHHHHhHHH
Q 031101 14 FVMLPIRALGKARDFYVRSMIN 35 (165)
Q Consensus 14 i~~aP~R~L~kARD~YVrsmt~ 35 (165)
-|+.-+--|-|-||||-..+.+
T Consensus 12 eLk~~ve~lEkERDFYF~KLRd 33 (82)
T 3tq7_B 12 DLKLTVDGLEKERDFYFSKLRD 33 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778899999999877654
No 5
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=7.75 E-value=80 Score=24.72 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=10.4
Q ss_pred HHHhhhhhHHHH
Q 031101 20 RALGKARDFYVR 31 (165)
Q Consensus 20 R~L~kARD~YVr 31 (165)
=||.|||++|||
T Consensus 90 DIL~rAr~~~mK 101 (151)
T 3oq0_A 90 DILSRAKKNYMK 101 (151)
T ss_dssp SHHHHHHHTTCE
T ss_pred hHHHHHHHcCCe
Confidence 489999999986
No 6
>3egr_A Phenylacetate-COA oxygenase subunit PAAB; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; 2.65A {Ralstonia eutropha JMP134}
Probab=7.12 E-value=91 Score=22.67 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=14.1
Q ss_pred HHHHHhhhhhHHHHhHHHh
Q 031101 18 PIRALGKARDFYVRSMINC 36 (165)
Q Consensus 18 P~R~L~kARD~YVrsmt~C 36 (165)
+=-+|..|||+|.|-.-++
T Consensus 33 ~e~Al~~Ar~~f~RR~e~v 51 (96)
T 3egr_A 33 AQQALHMARDVYTRRQEGV 51 (96)
T ss_dssp HHHHHHHHHHHTTTTCTTC
T ss_pred HHHHHHHHHHHhccccCCc
Confidence 4568999999999854333
No 7
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=7.12 E-value=2.9e+02 Score=20.33 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=16.8
Q ss_pred hhhHHHHHhhhhhHHHHhHHH
Q 031101 15 VMLPIRALGKARDFYVRSMIN 35 (165)
Q Consensus 15 ~~aP~R~L~kARD~YVrsmt~ 35 (165)
|+.-+.-|.|-||||-....+
T Consensus 30 Lk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 30 YKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566778899999999876654
No 8
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=6.99 E-value=1.8e+02 Score=24.62 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=21.3
Q ss_pred ceeeccCCCCCCCchHHHHHHHHhhhccC
Q 031101 52 KSFSARSALSSESDDYGELVRAASVRSMG 80 (165)
Q Consensus 52 rSfS~~s~r~~~ddd~~ELvRAAS~R~~g 80 (165)
..|.+++ +-++.+||++||.+|=+|++.
T Consensus 53 ~~y~idp-~~Gt~~dfk~Lv~~aH~~Gi~ 80 (448)
T 1g94_A 53 VSYELQS-RGGNRAQFIDMVNRCSAAGVD 80 (448)
T ss_dssp SCSCSCB-TTBCHHHHHHHHHHHHHTTCE
T ss_pred cccccCC-CCCCHHHHHHHHHHHHHCCCE
Confidence 3466653 557789999999999999654
No 9
>1kn7_A RCK4, voltage-gated potassium channel protein KV1.4; inactivation domain, membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1 PDB: 1zto_A*
Probab=6.10 E-value=1.4e+02 Score=20.75 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=10.3
Q ss_pred HHhcCCCCcCCCC
Q 031101 34 INCAEGRTYGQPM 46 (165)
Q Consensus 34 t~Ca~~~~~G~P~ 46 (165)
.||..+++||+..
T Consensus 14 sgcnsh~pygya~ 26 (78)
T 1kn7_A 14 SGCNSHMPYGYAA 26 (78)
T ss_dssp TTTSCCCCCSGGG
T ss_pred ccccccCCchHHH
Confidence 3899999998853
No 10
>2v0p_A TAP42, type 2A phosphatase-associated protein 42; phosphorylation, signal transduction inhibitor, hydrolase in; 1.80A {Saccharomyces cerevisiae}
Probab=6.04 E-value=2.9e+02 Score=22.07 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=20.4
Q ss_pred HHHHHhhhhhHHHHhHHHhcCCC
Q 031101 18 PIRALGKARDFYVRSMINCAEGR 40 (165)
Q Consensus 18 P~R~L~kARD~YVrsmt~Ca~~~ 40 (165)
=+.+|.+|+.+|+..+..|-...
T Consensus 100 R~~~L~~A~~~~~~FL~~l~~y~ 122 (234)
T 2v0p_A 100 KLIYLKKSVESFINFLTLLQDYK 122 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Confidence 46789999999999999998873
Done!