AmiGO: BLAST Results


BLAST match view associations BLAST with HMGB2 HMGB2 HMGB2 high mobility group B2	protein from Arabidopsis thaliana	1.2e-19
BLAST match view associations BLAST with HMGB4 HMGB4 HMGB4 high mobility group B4	protein from Arabidopsis thaliana	2.0e-17
BLAST match view associations BLAST with HMGB5 HMGB5 HMGB5 high mobility group B5	protein from Arabidopsis thaliana	1.4e-14
BLAST match view associations BLAST with HMGB6 HMGB6 HMGB6 high-mobility group box 6	protein from Arabidopsis thaliana	5.6e-13
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Gallus gallus	2.0e-10
BLAST match view associations BLAST with HMG1 HMG1 HMG1 High mobility group protein B1	protein from Gallus gallus	2.0e-10
BLAST match view associations BLAST with HMGB3 HMGB3 HMGB3 High mobility group protein B3	protein from Gallus gallus	4.1e-10
BLAST match view associations BLAST with SSRP1 SSRP1 SSRP1 FACT complex subunit SSRP1	protein from Gallus gallus	4.1e-10
BLAST match view associations BLAST with SSRP1 SSRP1 SSRP1 FACT complex subunit SSRP1	protein from Gallus gallus	4.1e-10
BLAST match view associations BLAST with SSRP1 SSRP1 SSRP1 FACT complex subunit SSRP1	protein from Homo sapiens	4.1e-10
BLAST match view associations BLAST with LOC690940 LOC690940 LOC690940 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)	gene from Rattus norvegicus	5.2e-10
BLAST match view associations BLAST with LOC689398 LOC689398 LOC689398 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)	gene from Rattus norvegicus	5.2e-10
BLAST match view associations BLAST with RGD1561694 RGD1561694 RGD1561694 similar to High mobility group protein 2 (HMG-2)	gene from Rattus norvegicus	5.2e-10
BLAST match view associations BLAST with hmgb1a hmgb1a hmgb1a high-mobility group box 1a	gene_product from Danio rerio	5.2e-10
BLAST match view associations BLAST with Hmgb3 Hmgb3 Hmgb3 high mobility group box 3	gene from Rattus norvegicus	6.6e-10
BLAST match view associations BLAST with RGD1559962 RGD1559962 RGD1559962 similar to High mobility group protein 2 (HMG-2)	gene from Rattus norvegicus	6.6e-10
BLAST match view associations BLAST with SSRP1 SSRP1 SSRP1 Uncharacterized protein	protein from Bos taurus	6.8e-10
BLAST match view associations BLAST with HMGB3 HMGB3 HMGB3 Uncharacterized protein	protein from Canis lupus familiaris	8.4e-10
BLAST match view associations BLAST with Hmgb3 Hmgb3 Hmgb3 high mobility group box 3	protein from Mus musculus	8.4e-10
BLAST match view associations BLAST with LOC532409 LOC532409 LOC532409 Uncharacterized protein	protein from Bos taurus	8.4e-10
BLAST match view associations BLAST with HMGB3 HMGB3 HMGB3 High mobility group protein B3	protein from Bos taurus	8.4e-10
BLAST match view associations BLAST with HMGB3 HMGB3 HMGB3 High mobility group protein B3	protein from Homo sapiens	8.4e-10
BLAST match view associations BLAST with HMGB3 HMGB3 HMGB3 High mobility group protein B3	protein from Homo sapiens	8.4e-10
BLAST match view associations BLAST with HMGB3 HMGB3 HMGB3 High mobility group protein B3	protein from Homo sapiens	8.4e-10
BLAST match view associations BLAST with LOC100517745 LOC100517745 LOC100517745 Uncharacterized protein	protein from Sus scrofa	8.4e-10
BLAST match view associations BLAST with SSRP1 SSRP1 SSRP1 Uncharacterized protein	protein from Sus scrofa	8.7e-10
BLAST match view associations BLAST with SSRP1 SSRP1 SSRP1 Uncharacterized protein	protein from Canis lupus familiaris	9.8e-10
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Gallus gallus	1.1e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Bos taurus	1.4e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Canis lupus familiaris	1.4e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Homo sapiens	1.4e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Sus scrofa	1.4e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Sus scrofa	1.4e-09
BLAST match view associations BLAST with LOC680968 LOC680968 LOC680968 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)	gene from Rattus norvegicus	1.4e-09
BLAST match view associations BLAST with LOC681718 LOC681718 LOC681718 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)	gene from Rattus norvegicus	1.4e-09
BLAST match view associations BLAST with Hmgb1 Hmgb1 Hmgb1 high mobility group box 1	gene from Rattus norvegicus	1.4e-09
BLAST match view associations BLAST with Hmg1l1 Hmg1l1 Hmg1l1 Protein Hmg1l1	protein from Rattus norvegicus	1.4e-09
BLAST match view associations BLAST with Hmg1l1 Hmg1l1 Hmg1l1 high-mobility group (nonhistone chromosomal) protein 1-like 1	gene from Rattus norvegicus	1.4e-09
BLAST match view associations BLAST with LOC618297 LOC618297 LOC618297 Uncharacterized protein	protein from Bos taurus	1.4e-09
BLAST match view associations BLAST with HMGB2 HMGB2 HMGB2 High mobility group protein B2	protein from Bos taurus	1.4e-09
BLAST match view associations BLAST with HMGB2 HMGB2 HMGB2 Uncharacterized protein	protein from Canis lupus familiaris	1.4e-09
BLAST match view associations BLAST with HMGB2 HMGB2 HMGB2 High mobility group protein B2	protein from Homo sapiens	1.4e-09
BLAST match view associations BLAST with HMGB2 HMGB2 HMGB2 High mobility group protein B2	protein from Sus scrofa	1.4e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Cricetulus griseus	1.4e-09
BLAST match view associations BLAST with RGD1564519 RGD1564519 RGD1564519 similar to High mobility group protein 2 (HMG-2)	gene from Rattus norvegicus	1.4e-09
BLAST match view associations BLAST with Hmgb2 Hmgb2 Hmgb2 high mobility group box 2	gene from Rattus norvegicus	1.4e-09
BLAST match view associations BLAST with SSRP1 SSRP1 SSRP1 Uncharacterized protein	protein from Canis lupus familiaris	1.4e-09
BLAST match view associations BLAST with LOC691220 LOC691220 LOC691220 hypothetical protein LOC691220	gene from Rattus norvegicus	1.8e-09
BLAST match view associations BLAST with LOC679451 LOC679451 LOC679451 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)	gene from Rattus norvegicus	1.8e-09
BLAST match view associations BLAST with HMGB2 HMGB2 HMGB2 High mobility group protein B2	protein from Gallus gallus	1.8e-09
BLAST match view associations BLAST with E1BIF8 E1BIF8 E1BIF8 Uncharacterized protein	protein from Bos taurus	1.8e-09
BLAST match view associations BLAST with HMGB3 HMGB3 HMGB3 High mobility group protein B3	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with LOC678705 LOC678705 LOC678705 hypothetical protein LOC678705	gene from Rattus norvegicus	2.2e-09
BLAST match view associations BLAST with E1BMK2 E1BMK2 E1BMK2 Uncharacterized protein	protein from Bos taurus	2.2e-09
BLAST match view associations BLAST with P0C6E5 P0C6E5 P0C6E5 Putative high mobility group protein B3-like protein	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with HMGB2 HMGB2 HMGB2 High mobility group protein B2	protein from Gallus gallus	2.9e-09
BLAST match view associations BLAST with Ssrp1 Ssrp1 Ssrp1 structure specific recognition protein 1	gene from Rattus norvegicus	3.0e-09
BLAST match view associations BLAST with Ssrp1 Ssrp1 Ssrp1 structure specific recognition protein 1	protein from Mus musculus	3.8e-09
BLAST match view associations BLAST with Ssrp Ssrp Ssrp Structure specific recognition protein	protein from Drosophila melanogaster	3.9e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Canis lupus familiaris	4.7e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Homo sapiens	4.7e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Homo sapiens	4.7e-09
BLAST match view associations BLAST with HMGB2 HMGB2 HMGB2 High mobility group protein B2	protein from Homo sapiens	4.7e-09
BLAST match view associations BLAST with Hmgb2 Hmgb2 Hmgb2 high mobility group box 2	protein from Mus musculus	4.7e-09
BLAST match view associations BLAST with HMGB1P1 HMGB1P1 HMGB1P1 Putative high mobility group protein B1-like 1	protein from Homo sapiens	5.9e-09
BLAST match view associations BLAST with LOC679344 LOC679344 LOC679344 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)	gene from Rattus norvegicus	6.1e-09
BLAST match view associations BLAST with LOC685520 LOC685520 LOC685520 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)	gene from Rattus norvegicus	6.1e-09
BLAST match view associations BLAST with RGD1563668 RGD1563668 RGD1563668 similar to High mobility group protein 1 (HMG-1)	gene from Rattus norvegicus	9.7e-09
BLAST match view associations BLAST with NHP6A NHP6A NHP6A High-mobility group (HMG) protein, binds to and remodels nucleosomes	gene from Saccharomyces cerevisiae	1.2e-08
BLAST match view associations BLAST with hmgb3b hmgb3b hmgb3b high-mobility group box 3b	gene_product from Danio rerio	1.6e-08
BLAST match view associations BLAST with HMG HMG HMG high mobility group	protein from Arabidopsis thaliana	1.9e-08
BLAST match view associations BLAST with NHP6B NHP6B NHP6B High-mobility group (HMG) protein, binds to and remodels nucleosomes	gene from Saccharomyces cerevisiae	2.0e-08
BLAST match view associations BLAST with Hmgb1-ps3 Hmgb1-ps3 Hmgb1-ps3 high mobility group box 1, pseudogene 3	gene from Rattus norvegicus	2.3e-08
BLAST match view associations BLAST with ssrp1 ssrp1 ssrp1 FACT complex subunit SSRP1	protein from Xenopus laevis	2.7e-08
BLAST match view associations BLAST with RGD1560584 RGD1560584 RGD1560584 similar to High mobility group protein 1 (HMG-1)	gene from Rattus norvegicus	3.3e-08
BLAST match view associations BLAST with HMGB4 HMGB4 HMGB4 High mobility group protein B4	protein from Homo sapiens	4.2e-08
BLAST match view associations BLAST with 3xHMG-box1 3xHMG-box1 3xHMG-box1 3xHigh Mobility Group-box1	protein from Arabidopsis thaliana	4.6e-08
BLAST match view associations BLAST with MGG_04489 MGG_04489 MGG_04489 Non-histone chromosomal protein 6	protein from Magnaporthe oryzae 70-15	5.3e-08
BLAST match view associations BLAST with 3xHMG-box2 3xHMG-box2 3xHMG-box2 3xHigh Mobility Group-box2	protein from Arabidopsis thaliana	8.1e-08
BLAST match view associations BLAST with NHP6A NHP6A NHP6A	gene_product from Candida albicans	2.9e-07
BLAST match view associations BLAST with NHP6 NHP6 NHP6 Non-histone chromosomal protein 6	protein from Candida albicans SC5314	2.9e-07
BLAST match view associations BLAST with SP100 SP100 SP100 Nuclear autoantigen Sp-100	protein from Homo sapiens	3.3e-07
BLAST match view associations BLAST with nhp6 nhp6 nhp6 HMG1/2 (high mobility group) box-containing protein	gene from Dictyostelium discoideum	3.8e-07
BLAST match view associations BLAST with HMGB4 HMGB4 HMGB4 High mobility group protein B4	protein from Bos taurus	4.1e-07
BLAST match view associations BLAST with LOC690521 LOC690521 LOC690521 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)	gene from Rattus norvegicus	4.8e-07
BLAST match view associations BLAST with F1M607 F1M607 F1M607 Uncharacterized protein	protein from Rattus norvegicus	6.0e-07
BLAST match view associations BLAST with Hmgb4 Hmgb4 Hmgb4 high-mobility group box 4	protein from Mus musculus	7.8e-07
BLAST match view associations BLAST with ABF2 ABF2 ABF2 Mitochondrial DNA-binding protein	gene from Saccharomyces cerevisiae	7.8e-07
BLAST match view associations BLAST with HmgD HmgD HmgD High mobility group protein D	protein from Drosophila melanogaster	1.3e-06
BLAST match view associations BLAST with PFL0145c PFL0145c PFL0145c high mobility group protein	gene from Plasmodium falciparum	1.3e-06
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein	protein from Plasmodium falciparum 3D7	1.3e-06
BLAST match view associations BLAST with ssrp1a ssrp1a ssrp1a structure specific recognition protein 1a	gene_product from Danio rerio	1.8e-06
BLAST match view associations BLAST with TOX3 TOX3 TOX3 Uncharacterized protein	protein from Sus scrofa	2.1e-06
BLAST match view associations BLAST with TOX3 TOX3 TOX3 Uncharacterized protein	protein from Bos taurus	2.7e-06
BLAST match view associations BLAST with TOX3 TOX3 TOX3 TOX high mobility group box family member 3	protein from Homo sapiens	2.9e-06
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031104
        (165 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006135 - symbol:HMGB2 "high mobility group ...   234  1.2e-19   1
TAIR|locus:2053893 - symbol:HMGB4 "high mobility group B4...   213  2.0e-17   1
TAIR|locus:2128003 - symbol:HMGB5 "high mobility group B5...   186  1.4e-14   1
TAIR|locus:2154433 - symbol:HMGB6 "high-mobility group bo...   171  5.6e-13   1
UNIPROTKB|F1N927 - symbol:HMGB1 "High mobility group prot...   147  2.0e-10   1
UNIPROTKB|Q9YH06 - symbol:HMG1 "High mobility group 1 pro...   147  2.0e-10   1
UNIPROTKB|P40618 - symbol:HMGB3 "High mobility group prot...   144  4.1e-10   1
UNIPROTKB|B6ZLK1 - symbol:SSRP1 "Structure-specific recog...   155  4.1e-10   1
UNIPROTKB|Q04678 - symbol:SSRP1 "FACT complex subunit SSR...   155  4.1e-10   1
UNIPROTKB|Q08945 - symbol:SSRP1 "FACT complex subunit SSR...   155  4.1e-10   1
RGD|1589841 - symbol:LOC690940 "similar to High mobility ...   143  5.2e-10   1
RGD|1593466 - symbol:LOC689398 "similar to High mobility ...   143  5.2e-10   1
RGD|1561694 - symbol:RGD1561694 "similar to High mobility...   143  5.2e-10   1
ZFIN|ZDB-GENE-030131-341 - symbol:hmgb1a "high-mobility g...   143  5.2e-10   1
RGD|1564407 - symbol:Hmgb3 "high mobility group box 3" sp...   142  6.6e-10   1
RGD|1559962 - symbol:RGD1559962 "similar to High mobility...   142  6.6e-10   1
UNIPROTKB|F6QYV9 - symbol:SSRP1 "Uncharacterized protein"...   153  6.8e-10   1
UNIPROTKB|J9NVS3 - symbol:HMGB3 "Uncharacterized protein"...   141  8.4e-10   1
MGI|MGI:1098219 - symbol:Hmgb3 "high mobility group box 3...   141  8.4e-10   1
UNIPROTKB|E1BIU3 - symbol:LOC532409 "Uncharacterized prot...   141  8.4e-10   1
UNIPROTKB|Q32L31 - symbol:HMGB3 "High mobility group prot...   141  8.4e-10   1
UNIPROTKB|E7EQU1 - symbol:HMGB3 "High mobility group prot...   141  8.4e-10   1
UNIPROTKB|E7ES08 - symbol:HMGB3 "High mobility group prot...   141  8.4e-10   1
UNIPROTKB|O15347 - symbol:HMGB3 "High mobility group prot...   141  8.4e-10   1
UNIPROTKB|F1RQ19 - symbol:LOC100517745 "Uncharacterized p...   141  8.4e-10   1
UNIPROTKB|I3LLA8 - symbol:SSRP1 "Uncharacterized protein"...   152  8.7e-10   1
UNIPROTKB|J9NYX4 - symbol:SSRP1 "Uncharacterized protein"...   150  9.8e-10   1
UNIPROTKB|P36194 - symbol:HMGB1 "High mobility group prot...   140  1.1e-09   1
UNIPROTKB|P10103 - symbol:HMGB1 "High mobility group prot...   139  1.4e-09   1
UNIPROTKB|Q6YKA4 - symbol:HMGB1 "High mobility group prot...   139  1.4e-09   1
UNIPROTKB|P09429 - symbol:HMGB1 "High mobility group prot...   139  1.4e-09   1
UNIPROTKB|F2Z594 - symbol:HMGB1 "High mobility group prot...   139  1.4e-09   1
UNIPROTKB|P12682 - symbol:HMGB1 "High mobility group prot...   139  1.4e-09   1
RGD|1585821 - symbol:LOC680968 "similar to High mobility ...   139  1.4e-09   1
RGD|1591683 - symbol:LOC681718 "similar to High mobility ...   139  1.4e-09   1
RGD|2802 - symbol:Hmgb1 "high mobility group box 1" speci...   139  1.4e-09   1
UNIPROTKB|D4A9T3 - symbol:D4A9T3 "Uncharacterized protein...   139  1.4e-09   1
RGD|1587112 - symbol:Hmg1l1 "high-mobility group (nonhist...   139  1.4e-09   1
UNIPROTKB|F1MF42 - symbol:LOC618297 "Uncharacterized prot...   139  1.4e-09   1
UNIPROTKB|P40673 - symbol:HMGB2 "High mobility group prot...   139  1.4e-09   1
UNIPROTKB|E2QY30 - symbol:HMGB2 "Uncharacterized protein"...   139  1.4e-09   1
UNIPROTKB|P26583 - symbol:HMGB2 "High mobility group prot...   139  1.4e-09   1
UNIPROTKB|P17741 - symbol:HMGB2 "High mobility group prot...   139  1.4e-09   1
UNIPROTKB|P07156 - symbol:HMGB1 "High mobility group prot...   139  1.4e-09   1
RGD|1564519 - symbol:RGD1564519 "similar to High mobility...   139  1.4e-09   1
RGD|69291 - symbol:Hmgb2 "high mobility group box 2" spec...   139  1.4e-09   1
UNIPROTKB|F1Q2J2 - symbol:SSRP1 "Uncharacterized protein"...   150  1.4e-09   1
RGD|1586285 - symbol:LOC691220 "hypothetical protein LOC6...   138  1.8e-09   1
RGD|1588313 - symbol:LOC679451 "similar to High mobility ...   138  1.8e-09   1
UNIPROTKB|F1NPU8 - symbol:HMGB2 "High mobility group prot...   138  1.8e-09   1
UNIPROTKB|E1BIF8 - symbol:E1BIF8 "Uncharacterized protein...   138  1.8e-09   1
UNIPROTKB|E9PES6 - symbol:HMGB3 "High mobility group prot...   137  2.2e-09   1
RGD|1596979 - symbol:LOC678705 "hypothetical protein LOC6...   137  2.2e-09   1
UNIPROTKB|E1BMK2 - symbol:E1BMK2 "Uncharacterized protein...   137  2.2e-09   1
UNIPROTKB|P0C6E5 - symbol:P0C6E5 "Putative high mobility ...   137  2.2e-09   1
UNIPROTKB|P26584 - symbol:HMGB2 "High mobility group prot...   136  2.9e-09   1
RGD|621143 - symbol:Ssrp1 "structure specific recognition...   147  3.0e-09   1
UNIPROTKB|Q04931 - symbol:Ssrp1 "FACT complex subunit SSR...   147  3.0e-09   1
MGI|MGI:107912 - symbol:Ssrp1 "structure specific recogni...   146  3.8e-09   1
FB|FBgn0010278 - symbol:Ssrp "Structure specific recognit...   146  3.9e-09   1
UNIPROTKB|J9P699 - symbol:HMGB1 "High mobility group prot...   134  4.7e-09   1
UNIPROTKB|Q5T7C4 - symbol:HMGB1 "High mobility group prot...   134  4.7e-09   1
UNIPROTKB|Q5T7C6 - symbol:HMGB1 "High mobility group prot...   134  4.7e-09   1
UNIPROTKB|D6R9A6 - symbol:HMGB2 "High mobility group prot...   134  4.7e-09   1
MGI|MGI:96157 - symbol:Hmgb2 "high mobility group box 2" ...   134  4.7e-09   1
UNIPROTKB|B2RPK0 - symbol:HMGB1P1 "Putative high mobility...   133  5.9e-09   1
RGD|1589528 - symbol:LOC679344 "similar to High mobility ...   133  6.1e-09   1
RGD|1592627 - symbol:LOC685520 "similar to High mobility ...   133  6.1e-09   1
RGD|1563668 - symbol:RGD1563668 "similar to High mobility...   131  9.7e-09   1
SGD|S000006256 - symbol:NHP6A "High-mobility group (HMG) ...   130  1.2e-08   1
ZFIN|ZDB-GENE-050417-290 - symbol:hmgb3b "high-mobility g...   129  1.6e-08   1
TAIR|locus:2098413 - symbol:HMG "high mobility group" spe...   139  1.9e-08   1
SGD|S000002157 - symbol:NHP6B "High-mobility group (HMG) ...   128  2.0e-08   1
RGD|1588759 - symbol:Hmgb1-ps3 "high mobility group box 1...   128  2.3e-08   1
UNIPROTKB|Q9W602 - symbol:ssrp1 "FACT complex subunit SSR...   138  2.7e-08   1
RGD|1560584 - symbol:RGD1560584 "similar to High mobility...   126  3.3e-08   1
UNIPROTKB|Q8WW32 - symbol:HMGB4 "High mobility group prot...   125  4.2e-08   1
TAIR|locus:2136103 - symbol:3xHMG-box1 "3xHigh Mobility G...   124  4.6e-08   2
ASPGD|ASPL0000037691 - symbol:AN2885 species:162425 "Emer...   124  5.3e-08   1
UNIPROTKB|G4MS97 - symbol:MGG_04489 "Non-histone chromoso...   124  5.3e-08   1
TAIR|locus:2128504 - symbol:3xHMG-box2 "3xHigh Mobility G...   131  8.1e-08   1
CGD|CAF0007020 - symbol:NHP6A species:5476 "Candida albic...   117  2.9e-07   1
UNIPROTKB|Q9UVL1 - symbol:NHP6 "Non-histone chromosomal p...   117  2.9e-07   1
UNIPROTKB|P23497 - symbol:SP100 "Nuclear autoantigen Sp-1...   129  3.3e-07   1
DICTYBASE|DDB_G0270260 - symbol:nhp6 "HMG1/2 (high mobili...   116  3.8e-07   1
UNIPROTKB|F1M1H9 - symbol:F1M1H9 "Uncharacterized protein...   116  3.8e-07   1
UNIPROTKB|Q32L34 - symbol:HMGB4 "High mobility group prot...   116  4.1e-07   1
RGD|1594733 - symbol:LOC690521 "similar to High mobility ...   117  4.8e-07   1
UNIPROTKB|F1M607 - symbol:F1M607 "Uncharacterized protein...   116  6.0e-07   1
POMBASE|SPBC28F2.11 - symbol:SPBC28F2.11 "HMG box protein...   120  6.3e-07   1
MGI|MGI:1916567 - symbol:Hmgb4 "high-mobility group box 4...   113  7.8e-07   1
SGD|S000004676 - symbol:ABF2 "Mitochondrial DNA-binding p...   113  7.8e-07   1
FB|FBgn0004362 - symbol:HmgD "High mobility group protein...   111  1.3e-06   1
GENEDB_PFALCIPARUM|PFL0145c - symbol:PFL0145c "high mobil...   111  1.3e-06   1
UNIPROTKB|Q8I616 - symbol:HMGB1 "High mobility group prot...   111  1.3e-06   1
UNIPROTKB|E1BQV6 - symbol:TOX3 "Uncharacterized protein" ...   120  1.8e-06   1
ZFIN|ZDB-GENE-031118-9 - symbol:ssrp1a "structure specifi...   121  1.8e-06   1
UNIPROTKB|F1REZ8 - symbol:TOX3 "Uncharacterized protein" ...   119  2.1e-06   1
UNIPROTKB|E1BKT2 - symbol:TOX3 "Uncharacterized protein" ...   118  2.7e-06   1
UNIPROTKB|O15405 - symbol:TOX3 "TOX high mobility group b...   118  2.9e-06   1

WARNING:  Descriptions of 46 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:505006135 [details] [associations]
            symbol:HMGB2 "high mobility group B2" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
            [GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
            "chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
            "structural constituent of chromatin" evidence=TAS] [GO:0006096
            "glycolysis" evidence=RCA] [GO:0006833 "water transport"
            evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
            [GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
            "response to temperature stimulus" evidence=RCA] [GO:0009651
            "response to salt stress" evidence=RCA] [GO:0046686 "response to
            cadmium ion" evidence=RCA] [GO:0003677 "DNA binding"
            evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0003677
            GO:GO:0000785 EMBL:AC069251 GO:GO:0003700 GO:GO:0003682
            eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0006333 HSSP:P07155 EMBL:Y14072 EMBL:AF370248
            EMBL:AY063064 EMBL:AK118543 EMBL:AB493468 EMBL:AY084731
            IPI:IPI00532636 IPI:IPI00657279 IPI:IPI00846437 PIR:F86339
            PIR:T51597 RefSeq:NP_001031074.1 RefSeq:NP_001077569.1
            RefSeq:NP_564123.1 UniGene:At.21298 ProteinModelPortal:O49596
            SMR:O49596 STRING:O49596 PaxDb:O49596 PRIDE:O49596
            EnsemblPlants:AT1G20693.1 GeneID:838658 KEGG:ath:AT1G20693
            TAIR:At1g20693 HOGENOM:HOG000197860 InParanoid:O49596 OMA:YVAKANK
            PhylomeDB:O49596 ProtClustDB:CLSN2687884 Genevestigator:O49596
            GO:GO:0030527 Uniprot:O49596
        Length = 144

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 45/97 (46%), Positives = 62/97 (63%)

Query:    29 RKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
             R + L  ++   K     K+A KDPNKPKRP SAFFVF+E+FR+ +K+E+P  K+V+ VG
Sbjct:    11 RSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVG 70

Query:    89 KAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 125
             KA G+KWKSL+D              ++YEK + AYN
Sbjct:    71 KAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYN 107


>TAIR|locus:2053893 [details] [associations]
            symbol:HMGB4 "high mobility group B4" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
            [GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
            "chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
            "structural constituent of chromatin" evidence=TAS] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006084 "acetyl-CoA metabolic
            process" evidence=RCA] [GO:0006342 "chromatin silencing"
            evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0008283 "cell proliferation" evidence=RCA] [GO:0016572 "histone
            phosphorylation" evidence=RCA] [GO:0051567 "histone H3-K9
            methylation" evidence=RCA] [GO:0003677 "DNA binding"
            evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005829
            GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0003677 GO:GO:0000785 GO:GO:0003700 GO:GO:0003682
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0006333 EMBL:AC007584 HOGENOM:HOG000197860 GO:GO:0030527
            eggNOG:NOG320947 EMBL:Y14074 EMBL:F20020 EMBL:AF370150
            EMBL:AF370562 EMBL:AY150467 EMBL:AK317044 EMBL:AY086336
            IPI:IPI00516334 IPI:IPI00656969 PIR:F84553 PIR:T51596
            RefSeq:NP_001031364.2 RefSeq:NP_001077909.1 RefSeq:NP_179347.1
            UniGene:At.481 HSSP:P11632 ProteinModelPortal:Q42344 SMR:Q42344
            STRING:Q42344 PaxDb:Q42344 PRIDE:Q42344 EnsemblPlants:AT2G17560.1
            EnsemblPlants:AT2G17560.2 GeneID:816263 KEGG:ath:AT2G17560
            TAIR:At2g17560 InParanoid:Q42344 OMA:LANPNNK PhylomeDB:Q42344
            ProtClustDB:CLSN2683898 Genevestigator:Q42344 Uniprot:Q42344
        Length = 138

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 43/98 (43%), Positives = 56/98 (57%)

Query:    28 KRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
             K +A     R   +  K  K  KKDPN+PKRPPSAFFVFLE+FRK +   +PN K+V+ V
Sbjct:     7 KAEATSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATV 66

Query:    88 GKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 125
             GKA G +WK++TD               +Y K +  YN
Sbjct:    67 GKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYN 104


>TAIR|locus:2128003 [details] [associations]
            symbol:HMGB5 "high mobility group B5" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
            [GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
            "chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
            "structural constituent of chromatin" evidence=TAS] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
            GO:GO:0000785 GO:GO:0003700 GO:GO:0003682 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0006333 EMBL:AL161587 EMBL:AL031135 HOGENOM:HOG000197860
            GO:GO:0030527 HSSP:P11632 EMBL:Y14075 EMBL:AK317173 EMBL:BT025597
            EMBL:AY085615 IPI:IPI00535971 PIR:T04662 RefSeq:NP_195282.1
            UniGene:At.482 ProteinModelPortal:O49597 SMR:O49597 STRING:O49597
            PaxDb:O49597 PRIDE:O49597 EnsemblPlants:AT4G35570.1 GeneID:829709
            KEGG:ath:AT4G35570 TAIR:At4g35570 InParanoid:O49597 OMA:YNMELAN
            PhylomeDB:O49597 ProtClustDB:CLSN2916185 Genevestigator:O49597
            Uniprot:O49597
        Length = 125

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 38/94 (40%), Positives = 54/94 (57%)

Query:    36 SRSSNKRTK----NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG 91
             SRS++ R K     V    KDPN+PK+PPS FFVFL++FRK +   +P+ K+V  VG+A 
Sbjct:    10 SRSTDDRLKVRGNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAA 69

Query:    92 GEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 125
             G+KWK++T+               +Y   M  YN
Sbjct:    70 GKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYN 103


>TAIR|locus:2154433 [details] [associations]
            symbol:HMGB6 "high-mobility group box 6" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            HSSP:P07155 EMBL:AB018110 HOGENOM:HOG000242532 EMBL:AK118688
            EMBL:AY086023 IPI:IPI00542717 RefSeq:NP_568431.1 UniGene:At.31011
            ProteinModelPortal:Q8LDF9 SMR:Q8LDF9 STRING:Q8LDF9 PaxDb:Q8LDF9
            PRIDE:Q8LDF9 EnsemblPlants:AT5G23420.1 GeneID:832408
            KEGG:ath:AT5G23420 TAIR:At5g23420 eggNOG:NOG297541
            InParanoid:Q8LDF9 OMA:AFFLFMD PhylomeDB:Q8LDF9
            ProtClustDB:CLSN2689854 Genevestigator:Q8LDF9 Uniprot:Q8LDF9
        Length = 241

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 42/106 (39%), Positives = 53/106 (50%)

Query:    21 VEDRAAGKRKAVLKASRSSN----KRTKNVKSAKKDP---NKPKRPPSAFFVFLEEFRKV 73
             VE +A  K+K   K   +S+    KR K     KK     NKPKRP +AFF+F+ +FRK 
Sbjct:    73 VETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRKT 132

Query:    74 YKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEK 119
             +K EH    A  A  K GGEKWKSLT+               +Y K
Sbjct:   133 FKSEHNGSLAKDAA-KIGGEKWKSLTEEEKKVYLDKAAELKAEYNK 177


>UNIPROTKB|F1N927 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
            "condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
            evidence=IEA] [GO:0002437 "inflammatory response to antigenic
            stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
            activity" evidence=IEA] [GO:0005615 "extracellular space"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
            "base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
            "cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
            kinase regulator activity" evidence=IEA] [GO:0017053
            "transcriptional repressor complex" evidence=IEA] [GO:0017055
            "negative regulation of RNA polymerase II transcriptional
            preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
            kinase activator activity" evidence=IEA] [GO:0030324 "lung
            development" evidence=IEA] [GO:0033151 "V(D)J recombination"
            evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
            [GO:0043065 "positive regulation of apoptotic process"
            evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0043388 "positive regulation of DNA binding" evidence=IEA]
            [GO:0045639 "positive regulation of myeloid cell differentiation"
            evidence=IEA] [GO:0045819 "positive regulation of glycogen
            catabolic process" evidence=IEA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
            [GO:0070491 "repressing transcription factor binding" evidence=IEA]
            [GO:2000426 "negative regulation of apoptotic cell clearance"
            evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
            Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
            GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
            GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
            GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
            GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
            GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
            GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
            GO:GO:2000426 EMBL:AADN02005232 IPI:IPI00818014
            Ensembl:ENSGALT00000036454 ArrayExpress:F1N927 Uniprot:F1N927
        Length = 214

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 42/121 (34%), Positives = 54/121 (44%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSS-NKRTKN-------VKSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA +    K  KN        K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSSKEKGKFEDMAKADKLRYEKEMKNYVPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  EFR   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162

 Score = 98 (39.6 bits), Expect = 7.4e-05, P = 7.4e-05
 Identities = 22/76 (28%), Positives = 36/76 (47%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                   L YEK M  Y
Sbjct:    63 MAKADKLRYEKEMKNY 78


>UNIPROTKB|Q9YH06 [details] [associations]
            symbol:HMG1 "High mobility group 1 protein" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
            "condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
            evidence=IEA] [GO:0002437 "inflammatory response to antigenic
            stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
            activity" evidence=IEA] [GO:0005615 "extracellular space"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
            "base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
            "cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
            kinase regulator activity" evidence=IEA] [GO:0017053
            "transcriptional repressor complex" evidence=IEA] [GO:0017055
            "negative regulation of RNA polymerase II transcriptional
            preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
            kinase activator activity" evidence=IEA] [GO:0030324 "lung
            development" evidence=IEA] [GO:0033151 "V(D)J recombination"
            evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
            [GO:0043065 "positive regulation of apoptotic process"
            evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0043388 "positive regulation of DNA binding" evidence=IEA]
            [GO:0045639 "positive regulation of myeloid cell differentiation"
            evidence=IEA] [GO:0045819 "positive regulation of glycogen
            catabolic process" evidence=IEA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
            [GO:0070491 "repressing transcription factor binding" evidence=IEA]
            [GO:2000426 "negative regulation of apoptotic cell clearance"
            evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
            Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
            GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
            GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
            GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
            GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
            GO:GO:0045639 HSSP:P07155 HOGENOM:HOG000197861 OMA:GEDAMRK
            KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 GO:GO:0006288 GO:GO:0010858 GO:GO:2000426
            EMBL:AADN02005232 EMBL:Y17968 EMBL:AJ851648 IPI:IPI00595982
            RefSeq:NP_990233.1 UniGene:Gga.4638 SMR:Q9YH06 STRING:Q9YH06
            Ensembl:ENSGALT00000027593 GeneID:395724 KEGG:gga:395724
            InParanoid:Q9YH06 NextBio:20815793 Uniprot:Q9YH06
        Length = 215

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 42/121 (34%), Positives = 54/121 (44%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSS-NKRTKN-------VKSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA +    K  KN        K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSSKEKGKFEDMAKADKLRYEKEMKNYVPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  EFR   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162

 Score = 98 (39.6 bits), Expect = 7.5e-05, P = 7.5e-05
 Identities = 22/76 (28%), Positives = 36/76 (47%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                   L YEK M  Y
Sbjct:    63 MAKADKLRYEKEMKNY 78


>UNIPROTKB|P40618 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            HOVERGEN:HBG009000 UniGene:Gga.4513 CTD:3149 KO:K11296 EMBL:X63463
            IPI:IPI00580706 PIR:S22359 RefSeq:NP_990626.2
            ProteinModelPortal:P40618 SMR:P40618 STRING:P40618 GeneID:396232
            KEGG:gga:396232 NextBio:20816284 Uniprot:P40618
        Length = 202

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 31/75 (41%), Positives = 39/75 (52%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXX 109
             KKDPN PKRPPSAFF+F  EFR   K  +P + ++  V K  GE W +L+D         
Sbjct:    87 KKDPNAPKRPPSAFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNK 145

Query:   110 XXXXXLDYEKLMTAY 124
                    YEK +  Y
Sbjct:   146 AAKLKEKYEKDVADY 160

 Score = 92 (37.4 bits), Expect = 0.00030, P = 0.00030
 Identities = 22/77 (28%), Positives = 37/77 (48%)

Query:    49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDXXXXXXX 107
             AK DP KPK   SA+  F++  R+ +K+++P V    A   K   E+WK+++        
Sbjct:     2 AKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFD 61

Query:   108 XXXXXXXLDYEKLMTAY 124
                    + Y++ M  Y
Sbjct:    62 EMAKADKVRYDREMKDY 78


>UNIPROTKB|B6ZLK1 [details] [associations]
            symbol:SSRP1 "Structure-specific recognition protein 1"
            species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887
            Pfam:PF00505 Pfam:PF03531 GO:GO:0005634 GO:GO:0005737
            Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
            InterPro:IPR024954 OMA:PVEVKKG IPI:IPI00582237 UniGene:Gga.2985
            HOVERGEN:HBG002932 EMBL:AADN02050757 EMBL:AADN02050758
            EMBL:AB465209 STRING:B6ZLK1 Ensembl:ENSGALT00000012159
            Ensembl:ENSGALT00000038738 Uniprot:B6ZLK1
        Length = 706

 Score = 155 (59.6 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 36/106 (33%), Positives = 54/106 (50%)

Query:    23 DRAAGKRKAVLKAS--RSSNKRTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
             D   G++K   KA   +    R K V+S K KDPN PKRP SA+ ++L   R+  K +HP
Sbjct:   509 DSDRGEKKPAKKAKIVKDRKPRKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHP 568

Query:    80 NVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 125
              + +++ + K  GE WK+++                DYEK M  Y+
Sbjct:   569 GI-SITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613


>UNIPROTKB|Q04678 [details] [associations]
            symbol:SSRP1 "FACT complex subunit SSRP1" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
            "DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005694 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165
            KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790 EMBL:AJ719641
            EMBL:L08815 EMBL:D14315 IPI:IPI00582237 PIR:S78050
            RefSeq:NP_001005796.1 UniGene:Gga.2985 ProteinModelPortal:Q04678
            STRING:Q04678 PRIDE:Q04678 GeneID:396509 KEGG:gga:396509 CTD:6749
            HOVERGEN:HBG002932 InParanoid:Q04678 OrthoDB:EOG41VK2K
            NextBio:20816548 Uniprot:Q04678
        Length = 706

 Score = 155 (59.6 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 36/106 (33%), Positives = 54/106 (50%)

Query:    23 DRAAGKRKAVLKAS--RSSNKRTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
             D   G++K   KA   +    R K V+S K KDPN PKRP SA+ ++L   R+  K +HP
Sbjct:   509 DSDRGEKKPAKKAKIVKDRKPRKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHP 568

Query:    80 NVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 125
              + +++ + K  GE WK+++                DYEK M  Y+
Sbjct:   569 GI-SITDLSKKAGELWKAMSKEKKEEWDRKAEDAKRDYEKAMKEYS 613


>UNIPROTKB|Q08945 [details] [associations]
            symbol:SSRP1 "FACT complex subunit SSRP1" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
            "DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=TAS]
            [GO:0006368 "transcription elongation from RNA polymerase II
            promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
            "positive regulation of viral transcription" evidence=TAS]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] Reactome:REACT_71 InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005694 GO:GO:0005654
            GO:GO:0016032 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0006368 Reactome:REACT_1788 GO:GO:0050434 Reactome:REACT_1892
            InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
            InterPro:IPR024954 HOGENOM:HOG000180790 OMA:PVEVKKG CTD:6749
            HOVERGEN:HBG002932 OrthoDB:EOG41VK2K EMBL:M86737 EMBL:BC005116
            EMBL:BC091486 IPI:IPI00005154 PIR:A41976 RefSeq:NP_003137.1
            UniGene:Hs.523680 ProteinModelPortal:Q08945 SMR:Q08945 DIP:DIP-169N
            IntAct:Q08945 MINT:MINT-5004485 STRING:Q08945 PhosphoSite:Q08945
            DMDM:730840 PaxDb:Q08945 PeptideAtlas:Q08945 PRIDE:Q08945
            DNASU:6749 Ensembl:ENST00000278412 GeneID:6749 KEGG:hsa:6749
            UCSC:uc001njt.3 GeneCards:GC11M057093 HGNC:HGNC:11327 HPA:HPA002697
            MIM:604328 neXtProt:NX_Q08945 PharmGKB:PA36151 InParanoid:Q08945
            PhylomeDB:Q08945 ChiTaRS:SSRP1 GenomeRNAi:6749 NextBio:26328
            PMAP-CutDB:Q08945 ArrayExpress:Q08945 Bgee:Q08945 CleanEx:HS_SSRP1
            Genevestigator:Q08945 GermOnline:ENSG00000149136 Uniprot:Q08945
        Length = 709

 Score = 155 (59.6 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 38/106 (35%), Positives = 52/106 (49%)

Query:    23 DRAAGKRKAVLKAS----RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
             DR   KRK + KA     R S K+   VK  K DPN PKRP SA+ ++L   R+  K +H
Sbjct:   511 DRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDH 569

Query:    79 PNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             P + +++ + K  GE WK ++                DYEK M  Y
Sbjct:   570 PGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEY 614


>RGD|1589841 [details] [associations]
            symbol:LOC690940 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001076232 Ncbi:XP_001076232
        Length = 214

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 40/123 (32%), Positives = 54/123 (43%)

Query:    10 VKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPS 61
             V K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPS
Sbjct:    41 VSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPS 100

Query:    62 AFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLM 121
             AFF+F  E+R   K EHP + ++  V K  GE W +                   YEK  
Sbjct:   101 AFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTASDDKQPYEKKAAKLKEKYEKDT 159

Query:   122 TAY 124
              AY
Sbjct:   160 AAY 162

 Score = 95 (38.5 bits), Expect = 0.00016, P = 0.00016
 Identities = 21/76 (27%), Positives = 36/76 (47%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S V K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>RGD|1593466 [details] [associations]
            symbol:LOC689398 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001068941 Ncbi:XP_001068941
        Length = 214

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 40/123 (32%), Positives = 54/123 (43%)

Query:    10 VKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPS 61
             V K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPS
Sbjct:    41 VSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPS 100

Query:    62 AFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLM 121
             AFF+F  E+R   K EHP + ++  V K  GE W +                   YEK  
Sbjct:   101 AFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTASDDKQPYEKKAAKLKEKYEKDT 159

Query:   122 TAY 124
              AY
Sbjct:   160 AAY 162

 Score = 95 (38.5 bits), Expect = 0.00016, P = 0.00016
 Identities = 21/76 (27%), Positives = 36/76 (47%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S V K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>RGD|1561694 [details] [associations]
            symbol:RGD1561694 "similar to High mobility group protein 2
            (HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            REFSEQ:XM_003752741 Ncbi:XP_003752789
        Length = 209

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 32/80 (40%), Positives = 38/80 (47%)

Query:    45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXX 104
             N K  KKDPN PKRPPSAFF+F  E R   K EHP + ++    K  GE W   +     
Sbjct:    84 NKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQ 142

Query:   105 XXXXXXXXXXLDYEKLMTAY 124
                         YEK + AY
Sbjct:   143 PYEQKAAKLKEKYEKDIAAY 162


>ZFIN|ZDB-GENE-030131-341 [details] [associations]
            symbol:hmgb1a "high-mobility group box 1a"
            species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IDA] [GO:0030900 "forebrain development" evidence=IMP]
            [GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            ZFIN:ZDB-GENE-030131-341 GO:GO:0005886 GO:GO:0005634 GO:GO:0003677
            GO:GO:0009409 GO:GO:0030900 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P07155
            HOVERGEN:HBG009000 EMBL:BC045917 IPI:IPI00489314 UniGene:Dr.150247
            UniGene:Dr.158952 ProteinModelPortal:Q7ZVC6 SMR:Q7ZVC6 PRIDE:Q7ZVC6
            ArrayExpress:Q7ZVC6 Bgee:Q7ZVC6 Uniprot:Q7ZVC6
        Length = 205

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 41/121 (33%), Positives = 57/121 (47%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRT-KNV---KSAKK----DPNKPKRPPSAF 63
             K  +E  K +  +  GK + + K  ++  +R  KN    K  KK    DPN PKRPPSAF
Sbjct:    42 KKCSERWKTMSAKEKGKFEDMAKLDKARYEREMKNYIPPKGEKKKRFKDPNAPKRPPSAF 101

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  EFR   K+E P + ++  V K  GE W  ++                 YEK + A
Sbjct:   102 FIFCSEFRPKVKEETPGL-SIGDVAKRLGEMWNKISSEEKQPYEKKAAKLKEKYEKDIAA 160

Query:   124 Y 124
             Y
Sbjct:   161 Y 161


>RGD|1564407 [details] [associations]
            symbol:Hmgb3 "high mobility group box 3" species:10116 "Rattus
            norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA;ISO] [GO:0045578 "negative regulation of B
            cell differentiation" evidence=ISO] [GO:0045638 "negative
            regulation of myeloid cell differentiation" evidence=ISO]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            RGD:1564407 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 CTD:3149 KO:K11296 OMA:DNEKQPY
            EMBL:BC158739 EMBL:CH474187 IPI:IPI00955625 RefSeq:NP_001166812.1
            RefSeq:XP_003751731.1 UniGene:Rn.203482 SMR:B0BN99 STRING:B0BN99
            Ensembl:ENSRNOT00000015044 GeneID:100912369 GeneID:305373
            KEGG:rno:100912369 KEGG:rno:305373 NextBio:654455
            Genevestigator:B0BN99 Uniprot:B0BN99
        Length = 200

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 30/75 (40%), Positives = 38/75 (50%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXX 109
             KKDPN PKRPPS FF+F  EFR   K  +P + ++  V K  GE W +L+D         
Sbjct:    87 KKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYMTK 145

Query:   110 XXXXXLDYEKLMTAY 124
                    YEK +  Y
Sbjct:   146 AAKLKEKYEKDVADY 160

 Score = 92 (37.4 bits), Expect = 0.00030, P = 0.00030
 Identities = 22/77 (28%), Positives = 37/77 (48%)

Query:    49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDXXXXXXX 107
             AK DP KPK   SA+  F++  R+ +K+++P V    A   K   E+WK+++        
Sbjct:     2 AKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFD 61

Query:   108 XXXXXXXLDYEKLMTAY 124
                    + Y++ M  Y
Sbjct:    62 EMAKADKVRYDREMKDY 78


>RGD|1559962 [details] [associations]
            symbol:RGD1559962 "similar to High mobility group protein 2
            (HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            REFSEQ:XM_001074365 Ncbi:XP_001074365
        Length = 209

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 31/78 (39%), Positives = 38/78 (48%)

Query:    47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXX 106
             K  KKDPN PKRPPSAFF+F  E R   K EHP + ++    K  GE W   +       
Sbjct:    86 KGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPY 144

Query:   107 XXXXXXXXLDYEKLMTAY 124
                      +YEK + AY
Sbjct:   145 EQKAAKLKEEYEKDIAAY 162


>UNIPROTKB|F6QYV9 [details] [associations]
            symbol:SSRP1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
            Pfam:PF08512 InterPro:IPR024954 OMA:PVEVKKG EMBL:DAAA02041723
            IPI:IPI00699243 UniGene:Bt.5242 Ensembl:ENSBTAT00000000486
            Uniprot:F6QYV9
        Length = 709

 Score = 153 (58.9 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 38/106 (35%), Positives = 52/106 (49%)

Query:    23 DRAAGKRKAVLKAS----RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
             DR   KRK + KA     R S K+   VK  K DPN PKRP SA+ ++L   R+  K +H
Sbjct:   511 DREEKKRKQLKKAKMAKDRKSRKKPLEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDH 569

Query:    79 PNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             P + +V+ + K  GE WK ++                +YEK M  Y
Sbjct:   570 PGI-SVTDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614


>UNIPROTKB|J9NVS3 [details] [associations]
            symbol:HMGB3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 OMA:DNEKQPY
            EMBL:AAEX03027044 EMBL:AAEX03027045 Ensembl:ENSCAFT00000045229
            Uniprot:J9NVS3
        Length = 219

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 30/75 (40%), Positives = 38/75 (50%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXX 109
             KKDPN PKRPPS FF+F  EFR   K  +P + ++  V K  GE W +L+D         
Sbjct:   105 KKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYNNK 163

Query:   110 XXXXXLDYEKLMTAY 124
                    YEK +  Y
Sbjct:   164 AAKLKEKYEKDVADY 178

 Score = 95 (38.5 bits), Expect = 0.00017, P = 0.00017
 Identities = 22/80 (27%), Positives = 39/80 (48%)

Query:    46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDXXXX 104
             ++ AK DP KPK   SA+  F++  R+ +K+++P V    A   K   E+WK+++     
Sbjct:    17 IRMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKS 76

Query:   105 XXXXXXXXXXLDYEKLMTAY 124
                       + Y++ M  Y
Sbjct:    77 KFDEMAKADKVRYDREMKDY 96


>MGI|MGI:1098219 [details] [associations]
            symbol:Hmgb3 "high mobility group box 3" species:10090 "Mus
            musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IEA]
            [GO:0045578 "negative regulation of B cell differentiation"
            evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
            differentiation" evidence=IDA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:1098219 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045638
            Pfam:PF09011 GO:GO:0045578 HOGENOM:HOG000197861 HOVERGEN:HBG009000
            OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149 KO:K11296 EMBL:AF022465
            EMBL:BC011276 EMBL:BC083352 IPI:IPI00228879 RefSeq:NP_032279.1
            UniGene:Mm.336087 ProteinModelPortal:O54879 SMR:O54879
            STRING:O54879 PhosphoSite:O54879 PaxDb:O54879 PRIDE:O54879
            Ensembl:ENSMUST00000015361 Ensembl:ENSMUST00000072699
            Ensembl:ENSMUST00000088874 Ensembl:ENSMUST00000114582 GeneID:15354
            KEGG:mmu:15354 InParanoid:O54879 NextBio:287964 Bgee:O54879
            CleanEx:MM_HMGB3 Genevestigator:O54879
            GermOnline:ENSMUSG00000015217 Uniprot:O54879
        Length = 200

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 30/75 (40%), Positives = 38/75 (50%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXX 109
             KKDPN PKRPPS FF+F  EFR   K  +P + ++  V K  GE W +L+D         
Sbjct:    87 KKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYVTK 145

Query:   110 XXXXXLDYEKLMTAY 124
                    YEK +  Y
Sbjct:   146 AAKLKEKYEKDVADY 160

 Score = 92 (37.4 bits), Expect = 0.00030, P = 0.00030
 Identities = 22/77 (28%), Positives = 37/77 (48%)

Query:    49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDXXXXXXX 107
             AK DP KPK   SA+  F++  R+ +K+++P V    A   K   E+WK+++        
Sbjct:     2 AKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFD 61

Query:   108 XXXXXXXLDYEKLMTAY 124
                    + Y++ M  Y
Sbjct:    62 EMAKADKVRYDREMKDY 78


>UNIPROTKB|E1BIU3 [details] [associations]
            symbol:LOC532409 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02004182
            IPI:IPI00839111 RefSeq:XP_003585778.1 Ensembl:ENSBTAT00000044962
            GeneID:532409 KEGG:bta:532409 OMA:FLENTRC ArrayExpress:E1BIU3
            Uniprot:E1BIU3
        Length = 186

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 30/75 (40%), Positives = 38/75 (50%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXX 109
             KKDPN PKRPPS FF+F  EFR   K  +P + ++  V K  GE W +L+D         
Sbjct:    87 KKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINK 145

Query:   110 XXXXXLDYEKLMTAY 124
                    YEK +  Y
Sbjct:   146 AAKLKEKYEKDVADY 160

 Score = 91 (37.1 bits), Expect = 0.00031, P = 0.00031
 Identities = 22/77 (28%), Positives = 37/77 (48%)

Query:    49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDXXXXXXX 107
             AK DP KPK   SA+  F++  R+ +K+++P V    A   K   E+WK+++        
Sbjct:     2 AKGDPKKPKGKMSAYSFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD 61

Query:   108 XXXXXXXLDYEKLMTAY 124
                    + Y++ M  Y
Sbjct:    62 EIAKADKVRYDREMKDY 78


>UNIPROTKB|Q32L31 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9913
            "Bos taurus" [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
            [GO:0006310 "DNA recombination" evidence=IDA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006310
            GO:GO:0003690 Pfam:PF09011 HSSP:P48431 HOGENOM:HOG000197861
            GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2
            eggNOG:NOG320947 EMBL:BC109793 IPI:IPI00883385
            RefSeq:NP_001069753.2 RefSeq:NP_001106728.1 UniGene:Bt.62966
            ProteinModelPortal:Q32L31 SMR:Q32L31 Ensembl:ENSBTAT00000005793
            Ensembl:ENSBTAT00000006785 GeneID:613729 KEGG:bta:613729 CTD:3149
            InParanoid:Q32L31 KO:K11296 OMA:DNEKQPY NextBio:20898733
            ArrayExpress:Q32L31 Uniprot:Q32L31
        Length = 200

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 30/75 (40%), Positives = 38/75 (50%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXX 109
             KKDPN PKRPPS FF+F  EFR   K  +P + ++  V K  GE W +L+D         
Sbjct:    87 KKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINK 145

Query:   110 XXXXXLDYEKLMTAY 124
                    YEK +  Y
Sbjct:   146 AAKLKEKYEKDVADY 160

 Score = 91 (37.1 bits), Expect = 0.00038, P = 0.00038
 Identities = 22/77 (28%), Positives = 37/77 (48%)

Query:    49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDXXXXXXX 107
             AK DP KPK   SA+  F++  R+ +K+++P V    A   K   E+WK+++        
Sbjct:     2 AKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD 61

Query:   108 XXXXXXXLDYEKLMTAY 124
                    + Y++ M  Y
Sbjct:    62 EMAKADKVRYDREMKDY 78


>UNIPROTKB|E7EQU1 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00640781
            ProteinModelPortal:E7EQU1 SMR:E7EQU1 PRIDE:E7EQU1
            Ensembl:ENST00000455596 ArrayExpress:E7EQU1 Bgee:E7EQU1
            Uniprot:E7EQU1
        Length = 193

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 30/75 (40%), Positives = 37/75 (49%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXX 109
             KKDPN PKRPPS FF+F  EFR   K  +P + ++  V K  GE W +L D         
Sbjct:    87 KKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITK 145

Query:   110 XXXXXLDYEKLMTAY 124
                    YEK +  Y
Sbjct:   146 AAKLKEKYEKDVADY 160

 Score = 91 (37.1 bits), Expect = 0.00035, P = 0.00035
 Identities = 22/77 (28%), Positives = 37/77 (48%)

Query:    49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDXXXXXXX 107
             AK DP KPK   SA+  F++  R+ +K+++P V    A   K   E+WK+++        
Sbjct:     2 AKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD 61

Query:   108 XXXXXXXLDYEKLMTAY 124
                    + Y++ M  Y
Sbjct:    62 EMAKADKVRYDREMKDY 78


>UNIPROTKB|E7ES08 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00643317
            ProteinModelPortal:E7ES08 SMR:E7ES08 PRIDE:E7ES08
            Ensembl:ENST00000419110 ArrayExpress:E7ES08 Bgee:E7ES08
            Uniprot:E7ES08
        Length = 188

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 30/75 (40%), Positives = 37/75 (49%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXX 109
             KKDPN PKRPPS FF+F  EFR   K  +P + ++  V K  GE W +L D         
Sbjct:    87 KKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITK 145

Query:   110 XXXXXLDYEKLMTAY 124
                    YEK +  Y
Sbjct:   146 AAKLKEKYEKDVADY 160

 Score = 91 (37.1 bits), Expect = 0.00032, P = 0.00032
 Identities = 22/77 (28%), Positives = 37/77 (48%)

Query:    49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDXXXXXXX 107
             AK DP KPK   SA+  F++  R+ +K+++P V    A   K   E+WK+++        
Sbjct:     2 AKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD 61

Query:   108 XXXXXXXLDYEKLMTAY 124
                    + Y++ M  Y
Sbjct:    62 EMAKADKVRYDREMKDY 78


>UNIPROTKB|O15347 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9606
            "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=ISS] [GO:0003690 "double-stranded DNA binding"
            evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
            [GO:0007275 "multicellular organismal development" evidence=TAS]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0007275 GO:GO:0005634 GO:GO:0005694 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0006310 GO:GO:0003690 Pfam:PF09011 HOGENOM:HOG000197861
            HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149
            KO:K11296 OMA:DNEKQPY EMBL:Y10043 EMBL:AF003626 EMBL:BC070482
            IPI:IPI00217477 RefSeq:NP_005333.2 UniGene:Hs.19114 PDB:2EQZ
            PDB:2YQI PDBsum:2EQZ PDBsum:2YQI ProteinModelPortal:O15347
            SMR:O15347 IntAct:O15347 STRING:O15347 PhosphoSite:O15347
            PaxDb:O15347 PeptideAtlas:O15347 PRIDE:O15347 DNASU:3149
            Ensembl:ENST00000325307 Ensembl:ENST00000448905 GeneID:3149
            KEGG:hsa:3149 UCSC:uc004fep.3 GeneCards:GC0XP150148 HGNC:HGNC:5004
            MIM:300193 neXtProt:NX_O15347 PharmGKB:PA35092 InParanoid:O15347
            PhylomeDB:O15347 EvolutionaryTrace:O15347 GenomeRNAi:3149
            NextBio:12480 ArrayExpress:O15347 Bgee:O15347 CleanEx:HS_HMGB3
            Genevestigator:O15347 GermOnline:ENSG00000029993 Uniprot:O15347
        Length = 200

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 30/75 (40%), Positives = 37/75 (49%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXX 109
             KKDPN PKRPPS FF+F  EFR   K  +P + ++  V K  GE W +L D         
Sbjct:    87 KKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITK 145

Query:   110 XXXXXLDYEKLMTAY 124
                    YEK +  Y
Sbjct:   146 AAKLKEKYEKDVADY 160

 Score = 91 (37.1 bits), Expect = 0.00038, P = 0.00038
 Identities = 22/77 (28%), Positives = 37/77 (48%)

Query:    49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDXXXXXXX 107
             AK DP KPK   SA+  F++  R+ +K+++P V    A   K   E+WK+++        
Sbjct:     2 AKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD 61

Query:   108 XXXXXXXLDYEKLMTAY 124
                    + Y++ M  Y
Sbjct:    62 EMAKADKVRYDREMKDY 78


>UNIPROTKB|F1RQ19 [details] [associations]
            symbol:LOC100517745 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 KO:K11296 OMA:DNEKQPY
            EMBL:CU929821 RefSeq:XP_003135516.1 UniGene:Ssc.27311
            Ensembl:ENSSSCT00000013934 GeneID:100517745 KEGG:ssc:100517745
            Uniprot:F1RQ19
        Length = 202

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 30/75 (40%), Positives = 38/75 (50%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXX 109
             KKDPN PKRPPS FF+F  EFR   K  +P + ++  V K  GE W +L+D         
Sbjct:    87 KKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPYINK 145

Query:   110 XXXXXLDYEKLMTAY 124
                    YEK +  Y
Sbjct:   146 AAKLKEKYEKDVADY 160

 Score = 91 (37.1 bits), Expect = 0.00039, P = 0.00039
 Identities = 22/77 (28%), Positives = 37/77 (48%)

Query:    49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDXXXXXXX 107
             AK DP KPK   SA+  F++  R+ +K+++P V    A   K   E+WK+++        
Sbjct:     2 AKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD 61

Query:   108 XXXXXXXLDYEKLMTAY 124
                    + Y++ M  Y
Sbjct:    62 EMAKADKVRYDREMKDY 78


>UNIPROTKB|I3LLA8 [details] [associations]
            symbol:SSRP1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
            Pfam:PF08512 KO:K09272 InterPro:IPR024954 OMA:PVEVKKG CTD:6749
            EMBL:FP312857 RefSeq:XP_003353912.1 Ensembl:ENSSSCT00000023703
            GeneID:100624907 KEGG:ssc:100624907 Uniprot:I3LLA8
        Length = 709

 Score = 152 (58.6 bits), Expect = 8.7e-10, P = 8.7e-10
 Identities = 37/106 (34%), Positives = 52/106 (49%)

Query:    23 DRAAGKRKAVLKAS----RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
             DR   KRK + KA     R S K+   VK  K DPN PKRP SA+ ++L   R+  K +H
Sbjct:   511 DRDEKKRKQLKKAKMAKDRKSRKKPTEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDH 569

Query:    79 PNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             P + +++ + K  GE WK ++                +YEK M  Y
Sbjct:   570 PGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614


>UNIPROTKB|J9NYX4 [details] [associations]
            symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
            PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
            Pfam:PF08512 InterPro:IPR024954 EMBL:AAEX03011448
            Ensembl:ENSCAFT00000049552 Uniprot:J9NYX4
        Length = 551

 Score = 150 (57.9 bits), Expect = 9.8e-10, P = 9.8e-10
 Identities = 37/106 (34%), Positives = 52/106 (49%)

Query:    23 DRAAGKRKAVLKAS----RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
             DR   KRK + KA     R S K+   VK  K DPN PKRP SA+ ++L   R+  K +H
Sbjct:   353 DRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKADH 411

Query:    79 PNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             P + +++ + K  GE WK ++                +YEK M  Y
Sbjct:   412 PGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 456


>UNIPROTKB|P36194 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOVERGEN:HBG009000 EMBL:D14314 IPI:IPI00591130
            PIR:I50254 UniGene:Gga.4513 ProteinModelPortal:P36194 SMR:P36194
            STRING:P36194 PRIDE:P36194 Uniprot:P36194
        Length = 201

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 30/75 (40%), Positives = 38/75 (50%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXX 109
             KKDPN PKRPPS FF+F  EFR   K  +P + ++  V K  GE W +L+D         
Sbjct:    86 KKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNK 144

Query:   110 XXXXXLDYEKLMTAY 124
                    YEK +  Y
Sbjct:   145 AAKLKEKYEKDVADY 159


>UNIPROTKB|P10103 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9913
            "Bos taurus" [GO:0050918 "positive chemotaxis" evidence=IDA]
            [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=ISS]
            [GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
            [GO:0000793 "condensed chromosome" evidence=ISS] [GO:0033151 "V(D)J
            recombination" evidence=IDA] [GO:0003684 "damaged DNA binding"
            evidence=IDA] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0006338 "chromatin
            remodeling" evidence=NAS] [GO:0042393 "histone binding"
            evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
            [GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0008301
            "DNA binding, bending" evidence=IDA] [GO:0001773 "myeloid dendritic
            cell activation" evidence=IDA] [GO:0042056 "chemoattractant
            activity" evidence=IDA] [GO:0002407 "dendritic cell chemotaxis"
            evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
            [GO:0070491 "repressing transcription factor binding" evidence=IEA]
            [GO:0043388 "positive regulation of DNA binding" evidence=IEA]
            [GO:0043280 "positive regulation of cysteine-type endopeptidase
            activity involved in apoptotic process" evidence=IEA] [GO:0043065
            "positive regulation of apoptotic process" evidence=IEA]
            [GO:0017053 "transcriptional repressor complex" evidence=IEA]
            [GO:0009986 "cell surface" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0002437 "inflammatory response to antigenic
            stimulus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0009986
            GO:GO:0005730 GO:GO:0002437 GO:GO:0003684 GO:GO:0045944
            GO:GO:0003700 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0043065 GO:GO:0003690 GO:GO:0003697 GO:GO:0043280
            GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
            GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
            GO:GO:0006265 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
            KO:K10802 GO:GO:0017055 EMBL:X12796 EMBL:BT030587 EMBL:BC102929
            EMBL:M26110 IPI:IPI00710114 PIR:S01947 RefSeq:NP_788785.1
            UniGene:Bt.49650 ProteinModelPortal:P10103 SMR:P10103 STRING:P10103
            PRIDE:P10103 Ensembl:ENSBTAT00000024094 GeneID:282691
            KEGG:bta:282691 CTD:3146 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 InParanoid:P10103 NextBio:20806359 GO:GO:0006288
            Uniprot:P10103
        Length = 215

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 39/121 (32%), Positives = 54/121 (44%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+R   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162

 Score = 90 (36.7 bits), Expect = 0.00060, P = 0.00060
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>UNIPROTKB|Q6YKA4 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9615
            "Canis lupus familiaris" [GO:0070491 "repressing transcription
            factor binding" evidence=IEA] [GO:0043388 "positive regulation of
            DNA binding" evidence=IEA] [GO:0043280 "positive regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IEA] [GO:0043065 "positive regulation of apoptotic
            process" evidence=IEA] [GO:0033151 "V(D)J recombination"
            evidence=IEA] [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0017053 "transcriptional repressor complex" evidence=IEA]
            [GO:0009986 "cell surface" evidence=IEA] [GO:0006288 "base-excision
            repair, DNA ligation" evidence=IEA] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            [GO:0002437 "inflammatory response to antigenic stimulus"
            evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053
            GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
            GO:GO:0045944 GO:GO:0003700 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065
            GO:GO:0043280 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
            GO:GO:0033151 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
            KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 GO:GO:0006288 EMBL:AY135519 EMBL:AY135521
            RefSeq:NP_001002937.1 UniGene:Cfa.416 ProteinModelPortal:Q6YKA4
            SMR:Q6YKA4 STRING:Q6YKA4 PRIDE:Q6YKA4 Ensembl:ENSCAFT00000010639
            GeneID:403170 KEGG:cfa:403170 InParanoid:Q6YKA4 NextBio:20816914
            Uniprot:Q6YKA4
        Length = 215

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 39/121 (32%), Positives = 54/121 (44%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+R   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162

 Score = 90 (36.7 bits), Expect = 0.00060, P = 0.00060
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>UNIPROTKB|P09429 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9606
            "Homo sapiens" [GO:0001654 "eye development" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0010858
            "calcium-dependent protein kinase regulator activity" evidence=IEA]
            [GO:0030295 "protein kinase activator activity" evidence=IEA]
            [GO:0030324 "lung development" evidence=IEA] [GO:0043005 "neuron
            projection" evidence=IEA] [GO:0045639 "positive regulation of
            myeloid cell differentiation" evidence=IEA] [GO:0045819 "positive
            regulation of glycogen catabolic process" evidence=IEA] [GO:0051384
            "response to glucocorticoid stimulus" evidence=IEA] [GO:2000426
            "negative regulation of apoptotic cell clearance" evidence=IEA]
            [GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006288 "base-excision repair, DNA ligation" evidence=IDA]
            [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IDA]
            [GO:0031175 "neuron projection development" evidence=ISS]
            [GO:0050786 "RAGE receptor binding" evidence=ISS] [GO:0043388
            "positive regulation of DNA binding" evidence=IDA] [GO:0006310 "DNA
            recombination" evidence=ISS] [GO:0043280 "positive regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IDA] [GO:0043065 "positive regulation of apoptotic
            process" evidence=IDA] [GO:0005125 "cytokine activity"
            evidence=ISS] [GO:0001773 "myeloid dendritic cell activation"
            evidence=ISS] [GO:0002407 "dendritic cell chemotaxis" evidence=ISS]
            [GO:0042056 "chemoattractant activity" evidence=ISS] [GO:0005634
            "nucleus" evidence=IDA] [GO:0051103 "DNA ligation involved in DNA
            repair" evidence=ISS] [GO:0009986 "cell surface" evidence=IDA]
            [GO:0002437 "inflammatory response to antigenic stimulus"
            evidence=IEP] [GO:0005615 "extracellular space" evidence=IDA]
            [GO:0006265 "DNA topological change" evidence=ISS] [GO:0003690
            "double-stranded DNA binding" evidence=ISS] [GO:0003697
            "single-stranded DNA binding" evidence=ISS] [GO:0008301 "DNA
            binding, bending" evidence=ISS;IMP] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP] [GO:0017053 "transcriptional repressor complex"
            evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
            [GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0008134
            "transcription factor binding" evidence=IPI] [GO:0070491
            "repressing transcription factor binding" evidence=IPI] [GO:0005576
            "extracellular region" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0006309 "apoptotic DNA fragmentation"
            evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
            [GO:0006921 "cellular component disassembly involved in execution
            phase of apoptosis" evidence=TAS] [GO:0045087 "innate immune
            response" evidence=TAS] [GO:0050918 "positive chemotaxis"
            evidence=ISS] Reactome:REACT_578 InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
            Reactome:REACT_6900 GO:GO:0005615 GO:GO:0005654 GO:GO:0009986
            GO:GO:0002437 GO:GO:0003684 GO:GO:0030324 EMBL:CH471075
            GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0045087
            GO:GO:0003700 GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648
            GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0043065 GO:GO:0003690 GO:GO:0003697
            GO:GO:0043280 GO:GO:0045819 GO:GO:0005125 GO:GO:0006309
            GO:GO:0000793 Pathway_Interaction_DB:amb2_neutrophils_pathway
            GO:GO:0042056 GO:GO:0031175 GO:GO:0001654 GO:GO:0043388
            GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
            GO:GO:0006265 GO:GO:0045639 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861
            OMA:GEDAMRK KO:K10802 GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000
            GO:GO:0006288 EMBL:X12597 EMBL:U51677 EMBL:D63874 EMBL:EF157968
            EMBL:AY377859 EMBL:AK291494 EMBL:AK122825 EMBL:CR749614
            EMBL:CR456863 EMBL:BT006940 EMBL:BT020159 EMBL:EU012027
            EMBL:AL353648 EMBL:BC003378 EMBL:BC030981 EMBL:BC066889
            EMBL:BC067732 EMBL:BC141844 IPI:IPI00419258 PIR:S02826
            RefSeq:NP_002119.1 UniGene:Hs.434102 UniGene:Hs.593339
            UniGene:Hs.596078 UniGene:Hs.741195 PDB:2LY4 PDB:2YRQ PDBsum:2LY4
            PDBsum:2YRQ ProteinModelPortal:P09429 SMR:P09429 DIP:DIP-24195N
            IntAct:P09429 MINT:MINT-153055 STRING:P09429 PhosphoSite:P09429
            DMDM:123369 DOSAC-COBS-2DPAGE:P09429 PaxDb:P09429
            PeptideAtlas:P09429 PRIDE:P09429 DNASU:3146 Ensembl:ENST00000339872
            Ensembl:ENST00000341423 Ensembl:ENST00000399494
            Ensembl:ENST00000405805 GeneID:3146 KEGG:hsa:3146 UCSC:uc001usx.3
            GeneCards:GC13M031032 H-InvDB:HIX0030745 HGNC:HGNC:4983
            HPA:CAB005873 HPA:HPA003506 MIM:163905 neXtProt:NX_P09429
            PharmGKB:PA188 InParanoid:P09429 PhylomeDB:P09429 ChiTaRS:HMGB1
            EvolutionaryTrace:P09429 GenomeRNAi:3146 NextBio:12470
            ArrayExpress:P09429 Bgee:P09429 CleanEx:HS_HMGB1
            Genevestigator:P09429 GermOnline:ENSG00000189403 GO:GO:0010858
            GO:GO:0050786 GO:GO:2000426 Uniprot:P09429
        Length = 215

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 39/121 (32%), Positives = 54/121 (44%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+R   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162

 Score = 90 (36.7 bits), Expect = 0.00060, P = 0.00060
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>UNIPROTKB|F2Z594 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9823
            "Sus scrofa" [GO:2000426 "negative regulation of apoptotic cell
            clearance" evidence=IEA] [GO:0070491 "repressing transcription
            factor binding" evidence=IEA] [GO:0051384 "response to
            glucocorticoid stimulus" evidence=IEA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0045819 "positive regulation of glycogen
            catabolic process" evidence=IEA] [GO:0045639 "positive regulation
            of myeloid cell differentiation" evidence=IEA] [GO:0043388
            "positive regulation of DNA binding" evidence=IEA] [GO:0043280
            "positive regulation of cysteine-type endopeptidase activity
            involved in apoptotic process" evidence=IEA] [GO:0043065 "positive
            regulation of apoptotic process" evidence=IEA] [GO:0043005 "neuron
            projection" evidence=IEA] [GO:0033151 "V(D)J recombination"
            evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
            [GO:0030295 "protein kinase activator activity" evidence=IEA]
            [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0017053 "transcriptional repressor complex" evidence=IEA]
            [GO:0010858 "calcium-dependent protein kinase regulator activity"
            evidence=IEA] [GO:0009986 "cell surface" evidence=IEA] [GO:0006288
            "base-excision repair, DNA ligation" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005615 "extracellular space"
            evidence=IEA] [GO:0005125 "cytokine activity" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0002437 "inflammatory response to
            antigenic stimulus" evidence=IEA] [GO:0001654 "eye development"
            evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
            GO:GO:0017053 GO:GO:0005615 GO:GO:0009986 GO:GO:0005730
            GO:GO:0002437 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
            GO:GO:0051384 GO:GO:0043005 GO:GO:0003700 GO:GO:0045860
            GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280 GO:GO:0045819
            GO:GO:0000793 GO:GO:0001654 GO:GO:0043388 Pfam:PF09011
            GO:GO:0033151 GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
            GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
            GO:GO:2000426 EMBL:CU062617 ProteinModelPortal:F2Z594 SMR:F2Z594
            PRIDE:F2Z594 Ensembl:ENSSSCT00000010221 Uniprot:F2Z594
        Length = 215

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 39/121 (32%), Positives = 54/121 (44%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+R   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162

 Score = 90 (36.7 bits), Expect = 0.00060, P = 0.00060
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>UNIPROTKB|P12682 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9823
            "Sus scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
            evidence=IDA] [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=ISS]
            [GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
            "base-excision repair, DNA ligation" evidence=ISS] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793
            Pfam:PF09011 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802
            GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:M21683
            PIR:A28897 RefSeq:NP_001004034.1 UniGene:Ssc.22696
            ProteinModelPortal:P12682 SMR:P12682 STRING:P12682 PRIDE:P12682
            GeneID:445521 KEGG:ssc:445521 Uniprot:P12682
        Length = 215

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 39/121 (32%), Positives = 54/121 (44%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+R   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162

 Score = 90 (36.7 bits), Expect = 0.00060, P = 0.00060
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>RGD|1585821 [details] [associations]
            symbol:LOC680968 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001059688 Ncbi:XP_001059688
        Length = 213

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 39/121 (32%), Positives = 54/121 (44%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+R   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162

 Score = 90 (36.7 bits), Expect = 0.00058, P = 0.00058
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>RGD|1591683 [details] [associations]
            symbol:LOC681718 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1591683
            GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            GeneTree:ENSGT00560000076717 IPI:IPI00767302
            Ensembl:ENSRNOT00000045504 OMA:NNTASED ArrayExpress:F1MA29
            Uniprot:F1MA29
        Length = 215

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 39/121 (32%), Positives = 54/121 (44%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+R   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162

 Score = 90 (36.7 bits), Expect = 0.00060, P = 0.00060
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>RGD|2802 [details] [associations]
            symbol:Hmgb1 "high mobility group box 1" species:10116 "Rattus
          norvegicus" [GO:0000122 "negative regulation of transcription from
          RNA polymerase II promoter" evidence=ISO] [GO:0000400 "four-way
          junction DNA binding" evidence=IDA] [GO:0000401 "open form four-way
          junction DNA binding" evidence=IDA] [GO:0000402 "crossed form
          four-way junction DNA binding" evidence=IDA] [GO:0000793 "condensed
          chromosome" evidence=ISO] [GO:0000902 "cell morphogenesis"
          evidence=IMP] [GO:0001654 "eye development" evidence=ISO] [GO:0001934
          "positive regulation of protein phosphorylation" evidence=ISO]
          [GO:0002053 "positive regulation of mesenchymal cell proliferation"
          evidence=IDA] [GO:0002437 "inflammatory response to antigenic
          stimulus" evidence=ISO] [GO:0003681 "bent DNA binding" evidence=IDA]
          [GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003697
          "single-stranded DNA binding" evidence=IDA] [GO:0003700
          "sequence-specific DNA binding transcription factor activity"
          evidence=ISO] [GO:0005125 "cytokine activity" evidence=ISO;IDA]
          [GO:0005515 "protein binding" evidence=IPI] [GO:0005615
          "extracellular space" evidence=ISO;IDA] [GO:0005634 "nucleus"
          evidence=ISO;IDA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
          "cytoplasm" evidence=ISO;IDA] [GO:0006288 "base-excision repair, DNA
          ligation" evidence=ISO] [GO:0006357 "regulation of transcription from
          RNA polymerase II promoter" evidence=ISO] [GO:0006935 "chemotaxis"
          evidence=IDA] [GO:0007399 "nervous system development" evidence=IMP]
          [GO:0007623 "circadian rhythm" evidence=IEP] [GO:0008097 "5S rRNA
          binding" evidence=IDA] [GO:0008134 "transcription factor binding"
          evidence=ISO;IDA] [GO:0008156 "negative regulation of DNA
          replication" evidence=IDA] [GO:0008201 "heparin binding"
          evidence=IDA;TAS] [GO:0008284 "positive regulation of cell
          proliferation" evidence=IDA] [GO:0008301 "DNA binding, bending"
          evidence=ISO;IDA] [GO:0009408 "response to heat" evidence=IEP]
          [GO:0009749 "response to glucose stimulus" evidence=IEP] [GO:0009986
          "cell surface" evidence=ISO] [GO:0010858 "calcium-dependent protein
          kinase regulator activity" evidence=ISO] [GO:0010942 "positive
          regulation of cell death" evidence=IMP] [GO:0010976 "positive
          regulation of neuron projection development" evidence=IMP]
          [GO:0014911 "positive regulation of smooth muscle cell migration"
          evidence=IMP] [GO:0017055 "negative regulation of RNA polymerase II
          transcriptional preinitiation complex assembly" evidence=ISO]
          [GO:0030295 "protein kinase activator activity" evidence=ISO]
          [GO:0030324 "lung development" evidence=ISO] [GO:0030335 "positive
          regulation of cell migration" evidence=IDA] [GO:0031175 "neuron
          projection development" evidence=IGI] [GO:0031532 "actin cytoskeleton
          reorganization" evidence=IMP] [GO:0032392 "DNA geometric change"
          evidence=IDA] [GO:0032496 "response to lipopolysaccharide"
          evidence=IEP] [GO:0032868 "response to insulin stimulus"
          evidence=IEP] [GO:0033034 "positive regulation of myeloid cell
          apoptotic process" evidence=IDA] [GO:0033151 "V(D)J recombination"
          evidence=ISO] [GO:0034341 "response to interferon-gamma"
          evidence=IMP] [GO:0042277 "peptide binding" evidence=IDA] [GO:0042493
          "response to drug" evidence=IEP] [GO:0043005 "neuron projection"
          evidence=ISO] [GO:0043065 "positive regulation of apoptotic process"
          evidence=ISO;IMP] [GO:0043280 "positive regulation of cysteine-type
          endopeptidase activity involved in apoptotic process" evidence=ISO]
          [GO:0043388 "positive regulation of DNA binding" evidence=ISO]
          [GO:0045639 "positive regulation of myeloid cell differentiation"
          evidence=ISO] [GO:0045663 "positive regulation of myoblast
          differentiation" evidence=IMP] [GO:0045819 "positive regulation of
          glycogen catabolic process" evidence=ISO] [GO:0045931 "positive
          regulation of mitotic cell cycle" evidence=IDA] [GO:0045944 "positive
          regulation of transcription from RNA polymerase II promoter"
          evidence=ISO] [GO:0046983 "protein dimerization activity"
          evidence=IDA] [GO:0050727 "regulation of inflammatory response"
          evidence=IDA] [GO:0050786 "RAGE receptor binding" evidence=IMP;IPI]
          [GO:0050831 "male-specific defense response to bacterium"
          evidence=IDA] [GO:0050930 "induction of positive chemotaxis"
          evidence=IDA] [GO:0051384 "response to glucocorticoid stimulus"
          evidence=ISO] [GO:0051450 "myoblast proliferation" evidence=IMP]
          [GO:0051861 "glycolipid binding" evidence=IDA] [GO:0070491
          "repressing transcription factor binding" evidence=ISO] [GO:0071347
          "cellular response to interleukin-1" evidence=IEP] [GO:0017053
          "transcriptional repressor complex" evidence=ISO] InterPro:IPR009071
          InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:2802
          GO:GO:0005634 GO:GO:0005737 GO:GO:0005694 GO:GO:0005615 GO:GO:0010976
          GO:GO:0042493 GO:GO:0045931 GO:GO:0007623 GO:GO:0009749 GO:GO:0032496
          GO:GO:0008201 GO:GO:0009408 GO:GO:0006935 GO:GO:0032868 GO:GO:0046983
          eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
          SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031532 GO:GO:0050727
          GO:GO:0042277 GO:GO:0003690 GO:GO:0003697 GO:GO:0000902 GO:GO:0033034
          GO:GO:0005125 GO:GO:0008134 GO:GO:0031175 GO:GO:0071347 GO:GO:0050930
          GO:GO:0008156 GO:GO:0034341 GO:GO:0002053 GO:GO:0014911 GO:GO:0045663
          GO:GO:0008097 GO:GO:0003681 GO:GO:0051861 Pfam:PF09011 GO:GO:0051450
          OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802 CTD:3146
          HOVERGEN:HBG009000 GO:GO:0050786 EMBL:M64986 EMBL:Y00463
          EMBL:AF275734 EMBL:BC061779 EMBL:BC081839 EMBL:BC088402
          IPI:IPI00555214 PIR:A41175 RefSeq:NP_037095.1 UniGene:Rn.144565
          UniGene:Rn.15185 UniGene:Rn.4121 PDB:1AAB PDB:1CKT PDB:1HME PDB:1HMF
          PDB:2GZK PDBsum:1AAB PDBsum:1CKT PDBsum:1HME PDBsum:1HMF PDBsum:2GZK
          ProteinModelPortal:P63159 SMR:P63159 STRING:P63159 PhosphoSite:P63159
          PRIDE:P63159 GeneID:25459 KEGG:rno:25459 InParanoid:P63159
          EvolutionaryTrace:P63159 NextBio:606729 ArrayExpress:P63159
          Genevestigator:P63159 GermOnline:ENSRNOG00000030351 GO:GO:0000402
          GO:GO:0000401 GO:GO:0032392 GO:GO:0050831 Uniprot:P63159
        Length = 215

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 39/121 (32%), Positives = 54/121 (44%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+R   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162

 Score = 90 (36.7 bits), Expect = 0.00060, P = 0.00060
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>UNIPROTKB|D4A9T3 [details] [associations]
            symbol:D4A9T3 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
            GeneTree:ENSGT00560000076717 IPI:IPI00564375
            Ensembl:ENSRNOT00000044787 Uniprot:D4A9T3
        Length = 184

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 39/121 (32%), Positives = 54/121 (44%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+R   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162

 Score = 90 (36.7 bits), Expect = 0.00040, P = 0.00040
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>RGD|1587112 [details] [associations]
            symbol:Hmg1l1 "high-mobility group (nonhistone chromosomal)
            protein 1-like 1" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1587112
            GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
            GeneTree:ENSGT00560000076717 IPI:IPI00564933 RefSeq:XP_003748829.1
            RefSeq:XP_003753270.1 Ensembl:ENSRNOT00000047765 GeneID:100909581
            KEGG:rno:100909581 OMA:KEYHSAR Uniprot:D3ZL49
        Length = 215

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 34/103 (33%), Positives = 45/103 (43%)

Query:    22 EDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
             ED A   +    +  ++        K   KDPN PKRPPSAFF+F  E+R   K EHP +
Sbjct:    61 EDMAKADKARYEREMKTYIPHKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120

Query:    82 KAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
              ++  V K  GE W +                   YEK + AY
Sbjct:   121 -SIGDVAKKLGEMWTNTAADDKQPYGKMAAKLKEKYEKDIAAY 162

 Score = 89 (36.4 bits), Expect = 0.00077, P = 0.00077
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>UNIPROTKB|F1MF42 [details] [associations]
            symbol:LOC618297 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02009820
            IPI:IPI00687888 Ensembl:ENSBTAT00000027565 OMA:INTCREE
            Uniprot:F1MF42
        Length = 196

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/78 (39%), Positives = 37/78 (47%)

Query:    47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXX 106
             K  KKDPN PKRPPSAFF+F  E R   K EHP + ++    K  GE W   +       
Sbjct:    75 KGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPY 133

Query:   107 XXXXXXXXLDYEKLMTAY 124
                       YEK + AY
Sbjct:   134 EQKAAKLKEKYEKDIAAY 151


>UNIPROTKB|P40673 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9913
            "Bos taurus" [GO:0048471 "perinuclear region of cytoplasm"
            evidence=ISS] [GO:0000793 "condensed chromosome" evidence=ISS]
            [GO:0008301 "DNA binding, bending" evidence=ISS;IDA] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0003684 "damaged DNA binding"
            evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
            [GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0042393
            "histone binding" evidence=IDA] [GO:0003697 "single-stranded DNA
            binding" evidence=IDA] [GO:0006265 "DNA topological change"
            evidence=IDA] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
            [GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
            [GO:0060326 "cell chemotaxis" evidence=IEA] [GO:0050786 "RAGE
            receptor binding" evidence=IEA] [GO:0048545 "response to steroid
            hormone stimulus" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0045654 "positive regulation of megakaryocyte
            differentiation" evidence=IEA] [GO:0045648 "positive regulation of
            erythrocyte differentiation" evidence=IEA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA]
            [GO:0043388 "positive regulation of DNA binding" evidence=IEA]
            [GO:0043234 "protein complex" evidence=IEA] [GO:0042056
            "chemoattractant activity" evidence=IEA] [GO:0032075 "positive
            regulation of nuclease activity" evidence=IEA] [GO:0019904 "protein
            domain specific binding" evidence=IEA] [GO:0008584 "male gonad
            development" evidence=IEA] [GO:0007289 "spermatid nucleus
            differentiation" evidence=IEA] [GO:0005615 "extracellular space"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0001938 "positive
            regulation of endothelial cell proliferation" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0005615
            GO:GO:0043234 GO:GO:0005730 GO:GO:0003684 GO:GO:0001938
            GO:GO:0045944 GO:GO:0003700 GO:GO:0006357 GO:GO:0071222
            GO:GO:0048545 GO:GO:0008584 GO:GO:0006338 eggNOG:COG5648
            GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0044212 GO:GO:0007289 GO:GO:0003690
            GO:GO:0003697 GO:GO:0045648 GO:GO:0045654 GO:GO:0060326
            GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
            Pfam:PF09011 GO:GO:0032075 GO:GO:0033151 GO:GO:0006265
            HOGENOM:HOG000197861 KO:K11295 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 GO:GO:0006288 EMBL:BC109755 IPI:IPI00689856
            RefSeq:NP_001032705.1 UniGene:Bt.6397 ProteinModelPortal:P40673
            SMR:P40673 STRING:P40673 PRIDE:P40673 Ensembl:ENSBTAT00000020096
            GeneID:540444 KEGG:bta:540444 CTD:3148 InParanoid:P40673
            OMA:KIKNDHP OrthoDB:EOG4TTGK2 NextBio:20878641 Uniprot:P40673
        Length = 209

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/78 (39%), Positives = 37/78 (47%)

Query:    47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXX 106
             K  KKDPN PKRPPSAFF+F  E R   K EHP + ++    K  GE W   +       
Sbjct:    86 KGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPY 144

Query:   107 XXXXXXXXLDYEKLMTAY 124
                       YEK + AY
Sbjct:   145 EQKAAKLKEKYEKDIAAY 162


>UNIPROTKB|E2QY30 [details] [associations]
            symbol:HMGB2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071222 "cellular response to
            lipopolysaccharide" evidence=IEA] [GO:0060326 "cell chemotaxis"
            evidence=IEA] [GO:0050786 "RAGE receptor binding" evidence=IEA]
            [GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
            [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045654 "positive regulation of megakaryocyte differentiation"
            evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
            differentiation" evidence=IEA] [GO:0044212 "transcription
            regulatory region DNA binding" evidence=IEA] [GO:0043388 "positive
            regulation of DNA binding" evidence=IEA] [GO:0043234 "protein
            complex" evidence=IEA] [GO:0042056 "chemoattractant activity"
            evidence=IEA] [GO:0032075 "positive regulation of nuclease
            activity" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0008584 "male gonad development"
            evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
            [GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
            [GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
            [GO:0005615 "extracellular space" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
            [GO:0001938 "positive regulation of endothelial cell proliferation"
            evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471
            GO:GO:0045892 GO:GO:0005615 GO:GO:0043234 GO:GO:0005730
            GO:GO:0003684 GO:GO:0001938 GO:GO:0045944 GO:GO:0003700
            GO:GO:0071222 GO:GO:0048545 GO:GO:0008584 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
            GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
            Pfam:PF09011 GO:GO:0032075 KO:K11295 GeneTree:ENSGT00560000076717
            GO:GO:0006288 CTD:3148 OMA:KIKNDHP EMBL:AAEX03014309
            RefSeq:XP_543194.2 Ensembl:ENSCAFT00000012535 GeneID:486068
            KEGG:cfa:486068 NextBio:20859918 Uniprot:E2QY30
        Length = 210

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/78 (39%), Positives = 37/78 (47%)

Query:    47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXX 106
             K  KKDPN PKRPPSAFF+F  E R   K EHP + ++    K  GE W   +       
Sbjct:    86 KGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPY 144

Query:   107 XXXXXXXXLDYEKLMTAY 124
                       YEK + AY
Sbjct:   145 EQKAAKLKEKYEKDIAAY 162


>UNIPROTKB|P26583 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9606
            "Homo sapiens" [GO:0007289 "spermatid nucleus differentiation"
            evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
            [GO:0019904 "protein domain specific binding" evidence=IEA]
            [GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
            [GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
            evidence=IDA] [GO:0006325 "chromatin organization" evidence=NAS]
            [GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006334
            "nucleosome assembly" evidence=NAS] [GO:0006357 "regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006288
            "base-excision repair, DNA ligation" evidence=IDA] [GO:0001938
            "positive regulation of endothelial cell proliferation"
            evidence=IDA] [GO:0042056 "chemoattractant activity" evidence=IDA]
            [GO:0060326 "cell chemotaxis" evidence=IDA] [GO:0050786 "RAGE
            receptor binding" evidence=IGI] [GO:0003684 "damaged DNA binding"
            evidence=IDA] [GO:0043234 "protein complex" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
            binding" evidence=IMP] [GO:0005615 "extracellular space"
            evidence=IDA] [GO:0071222 "cellular response to lipopolysaccharide"
            evidence=IEP] [GO:0051103 "DNA ligation involved in DNA repair"
            evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
            [GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0003697
            "single-stranded DNA binding" evidence=ISS] [GO:0032075 "positive
            regulation of nuclease activity" evidence=IDA] [GO:0033151 "V(D)J
            recombination" evidence=ISS] [GO:0044212 "transcription regulatory
            region DNA binding" evidence=IDA] [GO:0045893 "positive regulation
            of transcription, DNA-dependent" evidence=IDA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IDA] [GO:0043388 "positive regulation of DNA
            binding" evidence=IDA] [GO:0045648 "positive regulation of
            erythrocyte differentiation" evidence=IMP] [GO:0045654 "positive
            regulation of megakaryocyte differentiation" evidence=IMP]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0006309 "apoptotic DNA fragmentation" evidence=TAS] [GO:0006915
            "apoptotic process" evidence=TAS] [GO:0006921 "cellular component
            disassembly involved in execution phase of apoptosis" evidence=TAS]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0050918 "positive chemotaxis" evidence=IDA]
            Reactome:REACT_578 InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471 GO:GO:0045892
            GO:GO:0005615 GO:GO:0043234 GO:GO:0005654 GO:GO:0003684
            GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
            GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0044212 GO:GO:0007289 GO:GO:0003690 GO:GO:0003697
            EMBL:CH471056 GO:GO:0045648 GO:GO:0045654 GO:GO:0048015
            GO:GO:0060326 GO:GO:0006309 GO:GO:0000793 GO:GO:0042056
            GO:GO:0006334 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
            GO:GO:0033151 GO:GO:0006265 HOGENOM:HOG000197861 KO:K11295
            HOVERGEN:HBG009000 GO:GO:0006288 HPA:HPA003506 GO:GO:0050786
            CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:M83665 EMBL:X62534
            EMBL:BT019782 EMBL:AK311864 EMBL:BC001063 EMBL:BC100019 EMBL:Z17240
            IPI:IPI00219097 PIR:A42425 PIR:S30221 RefSeq:NP_001124160.1
            RefSeq:NP_001124161.1 RefSeq:NP_002120.1 UniGene:Hs.434953
            ProteinModelPortal:P26583 SMR:P26583 IntAct:P26583 MINT:MINT-240190
            STRING:P26583 PhosphoSite:P26583 DMDM:123374 PaxDb:P26583
            PeptideAtlas:P26583 PRIDE:P26583 DNASU:3148 Ensembl:ENST00000296503
            Ensembl:ENST00000438704 Ensembl:ENST00000446922 GeneID:3148
            KEGG:hsa:3148 UCSC:uc003ita.3 GeneCards:GC04M174252 HGNC:HGNC:5000
            MIM:163906 neXtProt:NX_P26583 PharmGKB:PA35091 InParanoid:P26583
            ChiTaRS:HMGB2 GenomeRNAi:3148 NextBio:12476 PMAP-CutDB:P26583
            ArrayExpress:P26583 Bgee:P26583 CleanEx:HS_HMGB2
            Genevestigator:P26583 GermOnline:ENSG00000164104 Uniprot:P26583
        Length = 209

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/78 (39%), Positives = 37/78 (47%)

Query:    47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXX 106
             K  KKDPN PKRPPSAFF+F  E R   K EHP + ++    K  GE W   +       
Sbjct:    86 KGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPY 144

Query:   107 XXXXXXXXLDYEKLMTAY 124
                       YEK + AY
Sbjct:   145 EQKAAKLKEKYEKDIAAY 162


>UNIPROTKB|P17741 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9823
            "Sus scrofa" [GO:0006265 "DNA topological change" evidence=IDA]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0008301 "DNA binding,
            bending" evidence=ISS;IDA] [GO:0051103 "DNA ligation involved in
            DNA repair" evidence=IDA] [GO:0048471 "perinuclear region of
            cytoplasm" evidence=ISS] [GO:0006357 "regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
            "base-excision repair, DNA ligation" evidence=ISS]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0048471 GO:GO:0006357 eggNOG:COG5648
            GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011 GO:GO:0006265
            HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
            CTD:3148 OrthoDB:EOG4TTGK2 EMBL:J02895 PIR:A34719
            RefSeq:NP_999228.1 UniGene:Ssc.226 PDB:1J3C PDB:1J3D PDB:1J3X
            PDBsum:1J3C PDBsum:1J3D PDBsum:1J3X ProteinModelPortal:P17741
            SMR:P17741 GeneID:397130 KEGG:ssc:397130 EvolutionaryTrace:P17741
            Uniprot:P17741
        Length = 210

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/78 (39%), Positives = 37/78 (47%)

Query:    47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXX 106
             K  KKDPN PKRPPSAFF+F  E R   K EHP + ++    K  GE W   +       
Sbjct:    86 KGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPY 144

Query:   107 XXXXXXXXLDYEKLMTAY 124
                       YEK + AY
Sbjct:   145 EQKAAKLKEKYEKDIAAY 162


>UNIPROTKB|P07156 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:10029
            "Cricetulus griseus" [GO:0000793 "condensed chromosome"
            evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
            evidence=ISS] [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=ISS]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
            GO:GO:0017055 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:Y00365
            PIR:A27853 PDB:1HSM PDB:1HSN PDB:1NHM PDB:1NHN PDBsum:1HSM
            PDBsum:1HSN PDBsum:1NHM PDBsum:1NHN ProteinModelPortal:P07156
            SMR:P07156 PRIDE:P07156 EvolutionaryTrace:P07156 Uniprot:P07156
        Length = 180

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 39/121 (32%), Positives = 54/121 (44%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:     8 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 67

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+R   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:    68 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAA 126

Query:   124 Y 124
             Y
Sbjct:   127 Y 127


>RGD|1564519 [details] [associations]
            symbol:RGD1564519 "similar to High mobility group protein 2
            (HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            REFSEQ:XM_001063065 Ncbi:XP_001063065
        Length = 210

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/78 (39%), Positives = 37/78 (47%)

Query:    47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXX 106
             K  KKDPN PKRPPSAFF+F  E R   K EHP + ++    K  GE W   +       
Sbjct:    86 KGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPY 144

Query:   107 XXXXXXXXLDYEKLMTAY 124
                       YEK + AY
Sbjct:   145 EQKAAKLKEKYEKDIAAY 162


>RGD|69291 [details] [associations]
            symbol:Hmgb2 "high mobility group box 2" species:10116 "Rattus
           norvegicus" [GO:0000793 "condensed chromosome" evidence=ISO;ISS]
           [GO:0001938 "positive regulation of endothelial cell proliferation"
           evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
           "damaged DNA binding" evidence=ISO] [GO:0003690 "double-stranded DNA
           binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
           transcription factor activity" evidence=ISO] [GO:0005615
           "extracellular space" evidence=ISO] [GO:0005634 "nucleus"
           evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
           [GO:0006288 "base-excision repair, DNA ligation" evidence=ISO;ISS]
           [GO:0006357 "regulation of transcription from RNA polymerase II
           promoter" evidence=ISO;ISS] [GO:0007049 "cell cycle" evidence=IEP]
           [GO:0007283 "spermatogenesis" evidence=ISO] [GO:0007289 "spermatid
           nucleus differentiation" evidence=ISO] [GO:0007399 "nervous system
           development" evidence=IDA] [GO:0008289 "lipid binding" evidence=IDA]
           [GO:0008301 "DNA binding, bending" evidence=ISO;ISS] [GO:0008584
           "male gonad development" evidence=ISO] [GO:0019904 "protein domain
           specific binding" evidence=ISO] [GO:0031100 "organ regeneration"
           evidence=IEP] [GO:0031493 "nucleosomal histone binding"
           evidence=IDA] [GO:0032075 "positive regulation of nuclease activity"
           evidence=ISO] [GO:0042056 "chemoattractant activity" evidence=ISO]
           [GO:0043066 "negative regulation of apoptotic process" evidence=ISO]
           [GO:0043234 "protein complex" evidence=ISO] [GO:0043388 "positive
           regulation of DNA binding" evidence=ISO] [GO:0044212 "transcription
           regulatory region DNA binding" evidence=ISO] [GO:0045648 "positive
           regulation of erythrocyte differentiation" evidence=ISO] [GO:0045654
           "positive regulation of megakaryocyte differentiation" evidence=ISO]
           [GO:0045892 "negative regulation of transcription, DNA-dependent"
           evidence=ISO] [GO:0045893 "positive regulation of transcription,
           DNA-dependent" evidence=ISO;IMP] [GO:0045944 "positive regulation of
           transcription from RNA polymerase II promoter" evidence=ISO]
           [GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS]
           [GO:0048545 "response to steroid hormone stimulus" evidence=ISO]
           [GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
           "positive chemotaxis" evidence=ISO] [GO:0051054 "positive regulation
           of DNA metabolic process" evidence=IMP] [GO:0060326 "cell
           chemotaxis" evidence=ISO] [GO:0071222 "cellular response to
           lipopolysaccharide" evidence=ISO] InterPro:IPR009071
           InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:69291
           GO:GO:0005634 GO:GO:0048471 GO:GO:0045893 GO:GO:0007399
           GO:GO:0031100 GO:GO:0006357 eggNOG:COG5648 GO:GO:0008301
           Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
           GO:GO:0007049 GO:GO:0008289 GO:GO:0003690 GO:GO:0000793
           GO:GO:0051054 GO:GO:0031493 Pfam:PF09011 HOGENOM:HOG000197861
           KO:K11295 GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000
           GO:GO:0006288 CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:D84418
           EMBL:BC078866 EMBL:BC089854 EMBL:BC107455 IPI:IPI00876582
           RefSeq:NP_058883.1 RefSeq:XP_001063065.2 RefSeq:XP_573272.3
           UniGene:Rn.218982 UniGene:Rn.2874 ProteinModelPortal:P52925
           SMR:P52925 STRING:P52925 DNASU:29395 Ensembl:ENSRNOT00000017635
           Ensembl:ENSRNOT00000046874 GeneID:29395 GeneID:498072 KEGG:rno:29395
           KEGG:rno:498072 UCSC:RGD:69291 CTD:498072 InParanoid:P52925
           NextBio:609027 Genevestigator:P52925 GermOnline:ENSRNOG00000013167
           GermOnline:ENSRNOG00000030313 Uniprot:P52925
        Length = 210

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/78 (39%), Positives = 37/78 (47%)

Query:    47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXX 106
             K  KKDPN PKRPPSAFF+F  E R   K EHP + ++    K  GE W   +       
Sbjct:    86 KGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPY 144

Query:   107 XXXXXXXXLDYEKLMTAY 124
                       YEK + AY
Sbjct:   145 EQKAAKLKEKYEKDIAAY 162


>UNIPROTKB|F1Q2J2 [details] [associations]
            symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
            PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
            Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
            InterPro:IPR024954 OMA:PVEVKKG EMBL:AAEX03011448
            Ensembl:ENSCAFT00000012707 Uniprot:F1Q2J2
        Length = 710

 Score = 150 (57.9 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 37/106 (34%), Positives = 52/106 (49%)

Query:    23 DRAAGKRKAVLKAS----RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
             DR   KRK + KA     R S K+   VK  K DPN PKRP SA+ ++L   R+  K +H
Sbjct:   510 DRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKADH 568

Query:    79 PNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             P + +++ + K  GE WK ++                +YEK M  Y
Sbjct:   569 PGI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 613


>RGD|1586285 [details] [associations]
            symbol:LOC691220 "hypothetical protein LOC691220" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
            RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
            GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
            IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
            Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
            NextBio:716771 Uniprot:D3ZCR3
        Length = 214

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 39/121 (32%), Positives = 54/121 (44%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+R   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIPA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162

 Score = 90 (36.7 bits), Expect = 0.00059, P = 0.00059
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>RGD|1588313 [details] [associations]
            symbol:LOC679451 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
            RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
            GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
            IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
            Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
            NextBio:716771 Uniprot:D3ZCR3
        Length = 214

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 39/121 (32%), Positives = 54/121 (44%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+R   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIPA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162

 Score = 90 (36.7 bits), Expect = 0.00059, P = 0.00059
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>UNIPROTKB|F1NPU8 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9031
            "Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000793
            "condensed chromosome" evidence=IEA] [GO:0001938 "positive
            regulation of endothelial cell proliferation" evidence=IEA]
            [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
            [GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
            [GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
            [GO:0008301 "DNA binding, bending" evidence=IEA] [GO:0008584 "male
            gonad development" evidence=IEA] [GO:0019904 "protein domain
            specific binding" evidence=IEA] [GO:0032075 "positive regulation of
            nuclease activity" evidence=IEA] [GO:0042056 "chemoattractant
            activity" evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
            [GO:0043388 "positive regulation of DNA binding" evidence=IEA]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
            differentiation" evidence=IEA] [GO:0045654 "positive regulation of
            megakaryocyte differentiation" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0048471 "perinuclear
            region of cytoplasm" evidence=IEA] [GO:0048545 "response to steroid
            hormone stimulus" evidence=IEA] [GO:0050786 "RAGE receptor binding"
            evidence=IEA] [GO:0060326 "cell chemotaxis" evidence=IEA]
            [GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0048471 GO:GO:0045892 GO:GO:0005615 GO:GO:0043234
            GO:GO:0005730 GO:GO:0003684 GO:GO:0001938 GO:GO:0045944
            GO:GO:0003700 GO:GO:0048545 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
            GO:GO:0045648 GO:GO:0045654 GO:GO:0060326 GO:GO:0000793
            GO:GO:0042056 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
            GeneTree:ENSGT00560000076717 GO:GO:0006288 OMA:KIKNDHP
            IPI:IPI00579203 EMBL:AADN02008951 Ensembl:ENSGALT00000017483
            Uniprot:F1NPU8
        Length = 207

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 36/114 (31%), Positives = 51/114 (44%)

Query:    19 KPVEDRAAGKRKAVLKASRSS-NKRTKNV-------KSAKKDPNKPKRPPSAFFVFLEEF 70
             K +  +  GK + + K  ++  ++  KN        K  KKDPN PKRPPSAFF+F  E 
Sbjct:    50 KTMSSKEKGKFEEMAKGDKARYDREMKNYVPPKGEKKGKKKDPNAPKRPPSAFFLFCSEH 109

Query:    71 RKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             R   K +HP + ++    K  GE W   +                 YEK + AY
Sbjct:   110 RPKIKNDHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 162


>UNIPROTKB|E1BIF8 [details] [associations]
            symbol:E1BIF8 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02073284
            IPI:IPI00728960 Ensembl:ENSBTAT00000006714 OMA:RAISEMW
            Uniprot:E1BIF8
        Length = 194

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 26/56 (46%), Positives = 34/56 (60%)

Query:    45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
             + K  KKDPN PKRPPS FF+F  EF    K  +P + ++  V K  GE W +L+D
Sbjct:    79 SAKGGKKDPNAPKRPPSGFFLFFSEFCSEIKSTNPGI-SIGDVAKKLGEMWNNLSD 133


>UNIPROTKB|E9PES6 [details] [associations]
            symbol:HMGB3 "High mobility group protein B3" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00411540
            ProteinModelPortal:E9PES6 SMR:E9PES6 Ensembl:ENST00000430118
            ArrayExpress:E9PES6 Bgee:E9PES6 Uniprot:E9PES6
        Length = 153

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 26/51 (50%), Positives = 32/51 (62%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
             KKDPN PKRPPS FF+F  EFR   K  +P + ++  V K  GE W +L D
Sbjct:    87 KKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLND 136

 Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 22/77 (28%), Positives = 37/77 (48%)

Query:    49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDXXXXXXX 107
             AK DP KPK   SA+  F++  R+ +K+++P V    A   K   E+WK+++        
Sbjct:     2 AKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD 61

Query:   108 XXXXXXXLDYEKLMTAY 124
                    + Y++ M  Y
Sbjct:    62 EMAKADKVRYDREMKDY 78


>RGD|1596979 [details] [associations]
            symbol:LOC678705 "hypothetical protein LOC678705" species:10116
            "Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] REFSEQ:XM_001053005
            Ncbi:XP_001053005
        Length = 214

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 39/121 (32%), Positives = 54/121 (44%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+R   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEIWNNTAADDKQPYEKKAAKLKEKYEKDIAA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162

 Score = 90 (36.7 bits), Expect = 0.00059, P = 0.00059
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>UNIPROTKB|E1BMK2 [details] [associations]
            symbol:E1BMK2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
            GO:GO:0005615 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
            GO:GO:0051384 GO:GO:0043005 GO:GO:0045860 GO:GO:0030295
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0045819 GO:GO:0001654 Pfam:PF09011 GO:GO:0045639
            GeneTree:ENSGT00560000076717 GO:GO:0010858 GO:GO:2000426
            EMBL:DAAA02042275 IPI:IPI00688378 Ensembl:ENSBTAT00000019791
            OMA:EXDIAAY Uniprot:E1BMK2
        Length = 215

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 31/78 (39%), Positives = 38/78 (48%)

Query:    47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXX 106
             K   KDPN PKRPPSAFF+F  E+R   K EHP + ++  V K  GE W +         
Sbjct:    86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAVDDKQPY 144

Query:   107 XXXXXXXXLDYEKLMTAY 124
                       YEK + AY
Sbjct:   145 EKKAAKLKEKYEKDIAAY 162


>UNIPROTKB|P0C6E5 [details] [associations]
            symbol:P0C6E5 "Putative high mobility group protein B3-like
            protein" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
            GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC067852 Pfam:PF09011
            IPI:IPI00888935 ProteinModelPortal:P0C6E5 SMR:P0C6E5 STRING:P0C6E5
            PhosphoSite:P0C6E5 DMDM:205539816 PaxDb:P0C6E5 PRIDE:P0C6E5
            neXtProt:NX_P0C6E5 InParanoid:P0C6E5 PhylomeDB:P0C6E5
            Genevestigator:P0C6E5 Uniprot:P0C6E5
        Length = 187

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/75 (40%), Positives = 36/75 (48%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXX 109
             KKDPN PKRPPS FF+F  EF    K  +P +  +  V K  GE WK+L D         
Sbjct:    86 KKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIP-IGDVAKKLGEMWKNLNDSEKQPYITQ 144

Query:   110 XXXXXLDYEKLMTAY 124
                    YEK +  Y
Sbjct:   145 AAKLKEKYEKDVAVY 159


>UNIPROTKB|P26584 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9031
            "Gallus gallus" [GO:0008301 "DNA binding, bending" evidence=ISS]
            [GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
            [GO:0000793 "condensed chromosome" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=ISS] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0048471
            GO:GO:0006357 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
            HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
            CTD:3148 OrthoDB:EOG4TTGK2 EMBL:M83235 EMBL:M80574 IPI:IPI00579203
            PIR:JC1114 PIR:JC1129 RefSeq:NP_990817.1 UniGene:Gga.4061
            ProteinModelPortal:P26584 SMR:P26584 STRING:P26584 PRIDE:P26584
            GeneID:396482 KEGG:gga:396482 eggNOG:NOG320947 InParanoid:P26584
            NextBio:20816521 Uniprot:P26584
        Length = 207

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 36/114 (31%), Positives = 50/114 (43%)

Query:    19 KPVEDRAAGKRKAVLKASRSS-NKRTKNV-------KSAKKDPNKPKRPPSAFFVFLEEF 70
             K +  +  GK + + K  ++  ++  KN        K  KKDPN PKRPPSAFF+F  E 
Sbjct:    50 KTMSSKEKGKFEEMAKGDKARYDREMKNYVPPKGEKKGKKKDPNAPKRPPSAFFLFCSEH 109

Query:    71 RKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             R   K +HP + ++    K  GE W                     YEK + AY
Sbjct:   110 RPKIKNDHPGL-SIGDTAKKLGEMWSEQLAKDKQPYEQKAAKLKEKYEKDIAAY 162


>RGD|621143 [details] [associations]
            symbol:Ssrp1 "structure specific recognition protein 1"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA;NAS] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005694 "chromosome"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA replication"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
            Pfam:PF03531 RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
            Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
            InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
            InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
            EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
            RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
            STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
            Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
            UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
            Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
        Length = 709

 Score = 147 (56.8 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 34/105 (32%), Positives = 54/105 (51%)

Query:    23 DRAAGKRKAVLKASRSSNK--RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
             DR   KRK + +A  + ++  R K+ +  K KDPN PKRP SA+ ++L   R+  K +HP
Sbjct:   511 DREEKKRKQLKRAKMAKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570

Query:    80 NVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
              + +++ + K  GE WK ++                +YEK M  Y
Sbjct:   571 GI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614


>UNIPROTKB|Q04931 [details] [associations]
            symbol:Ssrp1 "FACT complex subunit SSRP1" species:10116
            "Rattus norvegicus" [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
            Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
            InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
            InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
            EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
            RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
            STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
            Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
            UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
            Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
        Length = 709

 Score = 147 (56.8 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 34/105 (32%), Positives = 54/105 (51%)

Query:    23 DRAAGKRKAVLKASRSSNK--RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
             DR   KRK + +A  + ++  R K+ +  K KDPN PKRP SA+ ++L   R+  K +HP
Sbjct:   511 DREEKKRKQLKRAKMAKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570

Query:    80 NVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
              + +++ + K  GE WK ++                +YEK M  Y
Sbjct:   571 GI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614


>MGI|MGI:107912 [details] [associations]
            symbol:Ssrp1 "structure specific recognition protein 1"
            species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005694 "chromosome"
            evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
            to DNA damage stimulus" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 MGI:MGI:107912 Pfam:PF00505
            Pfam:PF03531 GO:GO:0005737 GO:GO:0005694 GO:GO:0005730
            GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
            GO:GO:0006260 GO:GO:0006281 GO:GO:0006351 GO:GO:0003682
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
            eggNOG:COG5165 KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790
            OMA:PVEVKKG CTD:6749 HOVERGEN:HBG002932 OrthoDB:EOG41VK2K
            EMBL:S50213 EMBL:AK146446 EMBL:AK146585 EMBL:AK146607 EMBL:AK151584
            EMBL:AK158552 EMBL:BC042502 EMBL:BC096682 IPI:IPI00407571
            IPI:IPI00652593 PIR:A41265 RefSeq:NP_001129553.1 RefSeq:NP_892035.2
            UniGene:Mm.219793 ProteinModelPortal:Q08943 SMR:Q08943
            IntAct:Q08943 STRING:Q08943 PhosphoSite:Q08943 PaxDb:Q08943
            PRIDE:Q08943 Ensembl:ENSMUST00000077798 Ensembl:ENSMUST00000168266
            GeneID:20833 KEGG:mmu:20833 NextBio:299579 Bgee:Q08943
            CleanEx:MM_SSRP1 Genevestigator:Q08943
            GermOnline:ENSMUSG00000027067 Uniprot:Q08943
        Length = 708

 Score = 146 (56.5 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 33/105 (31%), Positives = 55/105 (52%)

Query:    23 DRAAGKRKAVLKASRSSNKRTKNVKS-AKK--DPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
             DR   KR+ + +A  + +++++   S AKK  DPN PKRP SA+ ++L   R+  K +HP
Sbjct:   511 DREEKKREQLKRAKMAKDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570

Query:    80 NVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
              + +++ + K  GE WK ++                +YEK M  Y
Sbjct:   571 GI-SITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEY 614


>FB|FBgn0010278 [details] [associations]
            symbol:Ssrp "Structure specific recognition protein"
            species:7227 "Drosophila melanogaster" [GO:0000217 "DNA secondary
            structure binding" evidence=ISS] [GO:0003697 "single-stranded DNA
            binding" evidence=ISS;NAS] [GO:0005634 "nucleus" evidence=ISS;NAS]
            [GO:0003727 "single-stranded RNA binding" evidence=NAS] [GO:0005730
            "nucleolus" evidence=NAS] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0001672 "regulation of chromatin assembly or
            disassembly" evidence=IMP] [GO:0035101 "FACT complex"
            evidence=IDA;TAS] [GO:0043621 "protein self-association"
            evidence=IDA] [GO:0031492 "nucleosomal DNA binding" evidence=IDA]
            [GO:0051101 "regulation of DNA binding" evidence=IMP] [GO:0022008
            "neurogenesis" evidence=IMP] InterPro:IPR009071 InterPro:IPR000969
            PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:AE013599
            GO:GO:0005694 GO:GO:0022008 GO:GO:0006355 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0006260 GO:GO:0006281 GO:GO:0006351
            GO:GO:0003723 GO:GO:0043621 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0051101 GO:GO:0031492
            GeneTree:ENSGT00700000104547 GO:GO:0001672 GO:GO:0035101
            InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
            InterPro:IPR024954 OMA:PVEVKKG EMBL:L08825 EMBL:X68408
            EMBL:BT004831 PIR:A48217 PIR:S33688 RefSeq:NP_523830.2
            UniGene:Dm.3383 PDB:1WXL PDBsum:1WXL ProteinModelPortal:Q05344
            SMR:Q05344 IntAct:Q05344 STRING:Q05344 PaxDb:Q05344
            EnsemblMetazoa:FBtr0072242 GeneID:37767 KEGG:dme:Dmel_CG4817
            CTD:37767 FlyBase:FBgn0010278 InParanoid:Q05344 OrthoDB:EOG40CFZ2
            PhylomeDB:Q05344 EvolutionaryTrace:Q05344 GenomeRNAi:37767
            NextBio:805310 Bgee:Q05344 GermOnline:CG4817 Uniprot:Q05344
        Length = 723

 Score = 146 (56.5 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 33/88 (37%), Positives = 47/88 (53%)

Query:    13 DKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRK 72
             D +   K  E ++  K K   K      +RTK     KKD  KPKR  +AF ++L + R+
Sbjct:   514 DSDGAKKKKEKKSEKKEKKEKK--HKEKERTKKPSKKKKDSGKPKRATTAFMLWLNDTRE 571

Query:    73 VYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
               K+E+P +K V+ + K GGE WK L D
Sbjct:   572 SIKRENPGIK-VTEIAKKGGEMWKELKD 598


>UNIPROTKB|J9P699 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9615
            "Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
            EMBL:AAEX03014229 EMBL:AAEX03014230 Ensembl:ENSCAFT00000046727
            Uniprot:J9P699
        Length = 196

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 34/94 (36%), Positives = 48/94 (51%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
             F+F  E+R   K EHP + ++  V K  GE W +
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNN 135

 Score = 90 (36.7 bits), Expect = 0.00048, P = 0.00048
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>UNIPROTKB|Q5T7C4 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOVERGEN:HBG009000 EMBL:AL353648 UniGene:Hs.434102
            UniGene:Hs.593339 UniGene:Hs.596078 UniGene:Hs.741195
            HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681 IPI:IPI00644653
            SMR:Q5T7C4 Ensembl:ENST00000326004 Ensembl:ENST00000399489
            UCSC:uc001usv.3 Uniprot:Q5T7C4
        Length = 158

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 34/94 (36%), Positives = 48/94 (51%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
             F+F  E+R   K EHP + ++  V K  GE W +
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNN 135

 Score = 90 (36.7 bits), Expect = 0.00023, P = 0.00023
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>UNIPROTKB|Q5T7C6 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 EMBL:AL353648
            UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
            UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681
            IPI:IPI00645948 SMR:Q5T7C6 MINT:MINT-1373108
            Ensembl:ENST00000426225 Uniprot:Q5T7C6
        Length = 162

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 34/94 (36%), Positives = 48/94 (51%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
             F+F  E+R   K EHP + ++  V K  GE W +
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNN 135

 Score = 90 (36.7 bits), Expect = 0.00026, P = 0.00026
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>UNIPROTKB|D6R9A6 [details] [associations]
            symbol:HMGB2 "High mobility group protein B2" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0007289 "spermatid nucleus
            differentiation" evidence=IEA] [GO:0008584 "male gonad development"
            evidence=IEA] [GO:0019904 "protein domain specific binding"
            evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0048545
            "response to steroid hormone stimulus" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 GO:GO:0045944 GO:GO:0048545
            GO:GO:0008584 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0007289 GO:GO:0043388 Pfam:PF09011
            HOGENOM:HOG000197861 HGNC:HGNC:5000 ChiTaRS:HMGB2 EMBL:AC097534
            IPI:IPI00967671 ProteinModelPortal:D6R9A6 SMR:D6R9A6
            Ensembl:ENST00000506267 ArrayExpress:D6R9A6 Bgee:D6R9A6
            Uniprot:D6R9A6
        Length = 134

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 26/49 (53%), Positives = 30/49 (61%)

Query:    47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
             K  KKDPN PKRPPSAFF+F  E R   K EHP + ++    K  GE W
Sbjct:    86 KGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 20/76 (26%), Positives = 36/76 (47%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDXXXXXXXX 108
             K DPNKP+   S++  F++  R+ +K++HP+     A   K   E+WK+++         
Sbjct:     3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     Y++ M  Y
Sbjct:    63 MAKSDKARYDREMKNY 78


>MGI|MGI:96157 [details] [associations]
            symbol:Hmgb2 "high mobility group box 2" species:10090 "Mus
            musculus" [GO:0000793 "condensed chromosome" evidence=ISO]
            [GO:0001938 "positive regulation of endothelial cell proliferation"
            evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
            "damaged DNA binding" evidence=ISO] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=ISO]
            [GO:0005615 "extracellular space" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO;IC] [GO:0005694 "chromosome" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006288 "base-excision
            repair, DNA ligation" evidence=ISO] [GO:0006357 "regulation of
            transcription from RNA polymerase II promoter" evidence=ISO;IDA]
            [GO:0007283 "spermatogenesis" evidence=IMP] [GO:0007289 "spermatid
            nucleus differentiation" evidence=IMP] [GO:0007399 "nervous system
            development" evidence=ISO] [GO:0008289 "lipid binding"
            evidence=ISO] [GO:0008301 "DNA binding, bending" evidence=ISO]
            [GO:0008584 "male gonad development" evidence=IMP] [GO:0019904
            "protein domain specific binding" evidence=IPI] [GO:0031493
            "nucleosomal histone binding" evidence=ISO] [GO:0032075 "positive
            regulation of nuclease activity" evidence=ISO] [GO:0042056
            "chemoattractant activity" evidence=ISO] [GO:0043066 "negative
            regulation of apoptotic process" evidence=IMP] [GO:0043234 "protein
            complex" evidence=ISO] [GO:0043388 "positive regulation of DNA
            binding" evidence=ISO;IDA] [GO:0044212 "transcription regulatory
            region DNA binding" evidence=ISO] [GO:0045648 "positive regulation
            of erythrocyte differentiation" evidence=ISO] [GO:0045654 "positive
            regulation of megakaryocyte differentiation" evidence=ISO]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=ISO] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISO;IMP]
            [GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
            [GO:0048545 "response to steroid hormone stimulus" evidence=IMP]
            [GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
            "positive chemotaxis" evidence=ISO] [GO:0051054 "positive
            regulation of DNA metabolic process" evidence=ISO] [GO:0060326
            "cell chemotaxis" evidence=ISO] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:96157 Pfam:PF00505
            GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0043066
            GO:GO:0005615 GO:GO:0043234 GO:GO:0005730 GO:GO:0003684
            GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
            GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
            GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
            Pfam:PF09011 GO:GO:0032075 HOGENOM:HOG000197861 KO:K11295
            GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 GO:GO:0006288
            CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:X67668 EMBL:Z46757
            EMBL:AF267733 EMBL:AK003773 EMBL:AK008443 EMBL:AK012568
            EMBL:AK135296 EMBL:AK135297 EMBL:AK146212 EMBL:BC002050
            EMBL:BC046759 EMBL:BC083108 IPI:IPI00462291 PIR:S26062 PIR:S54774
            RefSeq:NP_032278.1 UniGene:Mm.279998 UniGene:Mm.470487
            UniGene:Mm.490424 ProteinModelPortal:P30681 SMR:P30681 DIP:DIP-899N
            MINT:MINT-4097539 STRING:P30681 PhosphoSite:P30681 PaxDb:P30681
            PRIDE:P30681 Ensembl:ENSMUST00000067925 GeneID:97165 KEGG:mmu:97165
            UCSC:uc009lsx.2 InParanoid:P30681 NextBio:352589 Bgee:P30681
            CleanEx:MM_HMGB2 Genevestigator:P30681
            GermOnline:ENSMUSG00000054717 Uniprot:P30681
        Length = 210

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 31/78 (39%), Positives = 37/78 (47%)

Query:    47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXX 106
             K  KKDPN PKRPPSAFF+F  E R   K EHP + ++    K  GE W   +       
Sbjct:    86 KGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGL-SIGDTAKKLGEMWSEQSAKDKQPY 144

Query:   107 XXXXXXXXLDYEKLMTAY 124
                       YEK + AY
Sbjct:   145 EQKAAKLKEKYEKDIAAY 162


>UNIPROTKB|B2RPK0 [details] [associations]
            symbol:HMGB1P1 "Putative high mobility group protein
            B1-like 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] InterPro:IPR009071 PROSITE:PS00353
            Pfam:PF00505 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
            eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 EMBL:AL160176 UniGene:Hs.131543
            EMBL:BC137482 EMBL:BC137483 IPI:IPI00022796
            ProteinModelPortal:B2RPK0 SMR:B2RPK0 STRING:B2RPK0 PaxDb:B2RPK0
            PRIDE:B2RPK0 GeneCards:GC20M056062 HGNC:HGNC:4993
            neXtProt:NX_B2RPK0 InParanoid:B2RPK0 OrthoDB:EOG4KWJV1
            PhylomeDB:B2RPK0 NextBio:39267 Genevestigator:B2RPK0 Uniprot:B2RPK0
        Length = 211

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 30/78 (38%), Positives = 37/78 (47%)

Query:    47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXX 106
             K   KDPN PKRPPSAFF+F  E+    K EHP + ++  V K  GE W +         
Sbjct:    86 KKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPG 144

Query:   107 XXXXXXXXLDYEKLMTAY 124
                       YEK + AY
Sbjct:   145 EKKAAKLKEKYEKDIAAY 162


>RGD|1589528 [details] [associations]
            symbol:LOC679344 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001054795 Ncbi:XP_001054795
        Length = 215

 Score = 133 (51.9 bits), Expect = 6.1e-09, P = 6.1e-09
 Identities = 38/121 (31%), Positives = 53/121 (43%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+    K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEYHPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKEKYEKDIAA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162


>RGD|1592627 [details] [associations]
            symbol:LOC685520 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_003749913 Ncbi:XP_003749961
        Length = 215

 Score = 133 (51.9 bits), Expect = 6.1e-09, P = 6.1e-09
 Identities = 38/121 (31%), Positives = 53/121 (43%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+    K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEYHPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKEKYEKDIAA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162


>RGD|1563668 [details] [associations]
            symbol:RGD1563668 "similar to High mobility group protein 1
            (HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            REFSEQ:XM_001074778 Ncbi:XP_001074778
        Length = 211

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 40/121 (33%), Positives = 55/121 (45%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRT-KNVKSAK-------KDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R  K   S K       KDPN PK PPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYISPKGETKKKFKDPNAPKTPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+R   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVVKKLGEMWTNTAADDKQPYEKMAAKLKEKYEKDIAA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162


>SGD|S000006256 [details] [associations]
            symbol:NHP6A "High-mobility group (HMG) protein, binds to and
            remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
            [GO:0032301 "MutSalpha complex" evidence=IDA] [GO:0006974 "response
            to DNA damage stimulus" evidence=IEA] [GO:0070898 "RNA polymerase
            III transcriptional preinitiation complex assembly"
            evidence=IGI;IDA] [GO:0006338 "chromatin remodeling" evidence=IGI]
            [GO:0034724 "DNA replication-independent nucleosome organization"
            evidence=IDA] [GO:0051123 "RNA polymerase II transcriptional
            preinitiation complex assembly" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
            "chromosome" evidence=IEA] [GO:0008301 "DNA binding, bending"
            evidence=IDA] [GO:0031491 "nucleosome binding" evidence=IDA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006298 "mismatch
            repair" evidence=IC] InterPro:IPR009071 SGD:S000006256 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0043565
            GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
            EMBL:Z71255 EMBL:BK006949 GO:GO:0031491 EMBL:Z49219
            GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 GO:GO:0051123
            EMBL:M95912 EMBL:X15317 EMBL:AY693230 PIR:A35072 RefSeq:NP_015377.1
            PDB:1CG7 PDB:1J5N PDB:1LWM PDBsum:1CG7 PDBsum:1J5N PDBsum:1LWM
            DisProt:DP00432 ProteinModelPortal:P11632 SMR:P11632 IntAct:P11632
            MINT:MINT-2785986 STRING:P11632 PaxDb:P11632 PeptideAtlas:P11632
            EnsemblFungi:YPR052C GeneID:856165 KEGG:sce:YPR052C CYGD:YPR052c
            OMA:FFANDNR OrthoDB:EOG4S7P0P EvolutionaryTrace:P11632
            NextBio:981313 Genevestigator:P11632 GermOnline:YPR052C
            GO:GO:0034724 GO:GO:0070898 Uniprot:P11632
        Length = 93

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 33/89 (37%), Positives = 40/89 (44%)

Query:    37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
             R   KRT      KKDPN PKR  SA+  F  E R + + E+P++     VGK  GEKWK
Sbjct:     5 REPKKRTTR---KKKDPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWK 60

Query:    97 SLTDXXXXXXXXXXXXXXLDYEKLMTAYN 125
             +LT                 YE     YN
Sbjct:    61 ALTPEEKQPYEAKAQADKKRYESEKELYN 89


>ZFIN|ZDB-GENE-050417-290 [details] [associations]
            symbol:hmgb3b "high-mobility group box 3b"
            species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            ZFIN:ZDB-GENE-050417-290 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 KO:K11296
            EMBL:BC093186 IPI:IPI00511002 RefSeq:NP_001017769.1
            UniGene:Dr.75880 ProteinModelPortal:Q567G0 SMR:Q567G0 GeneID:550466
            KEGG:dre:550466 CTD:550466 InParanoid:Q567G0 OrthoDB:EOG4TB4CM
            NextBio:20879710 ArrayExpress:Q567G0 Uniprot:Q567G0
        Length = 198

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 28/81 (34%), Positives = 40/81 (49%)

Query:    44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXX 103
             K  +  KKDPN P+RPPS FF+F  E R + K ++P++  +  V K  G  W +L+D   
Sbjct:    82 KKGRKQKKDPNAPRRPPSGFFLFCAEQRPIIKAQNPSL-GIGDVAKKLGGMWNNLSDSEK 140

Query:   104 XXXXXXXXXXXLDYEKLMTAY 124
                          Y+K M  Y
Sbjct:   141 QPFLSNADKLKDKYQKDMAFY 161

 Score = 90 (36.7 bits), Expect = 0.00049, P = 0.00049
 Identities = 22/78 (28%), Positives = 36/78 (46%)

Query:    49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXX 107
             AK DP KPK   SA+  F++  R+ + +++P V    S   K   E+WK+++        
Sbjct:     2 AKGDPGKPKGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFE 61

Query:   108 XXXXXXXLDYEKLMTAYN 125
                      Y++ M  YN
Sbjct:    62 DLAKQDKARYDQEMMHYN 79


>TAIR|locus:2098413 [details] [associations]
            symbol:HMG "high mobility group" species:3702
            "Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0005719 "nuclear euchromatin" evidence=IDA]
            [GO:0035101 "FACT complex" evidence=IDA] [GO:0010228 "vegetative to
            reproductive phase transition of meristem" evidence=IMP]
            [GO:0000394 "RNA splicing, via endonucleolytic cleavage and
            ligation" evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
            [GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
            "methylation-dependent chromatin silencing" evidence=RCA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
            [GO:0009616 "virus induced gene silencing" evidence=RCA]
            [GO:0009855 "determination of bilateral symmetry" evidence=RCA]
            [GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0010014
            "meristem initiation" evidence=RCA] [GO:0010050 "vegetative phase
            change" evidence=RCA] [GO:0010051 "xylem and phloem pattern
            formation" evidence=RCA] [GO:0010073 "meristem maintenance"
            evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
            interference" evidence=RCA] [GO:0016246 "RNA interference"
            evidence=RCA] [GO:0016569 "covalent chromatin modification"
            evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=RCA] [GO:0048439 "flower morphogenesis"
            evidence=RCA] [GO:0048519 "negative regulation of biological
            process" evidence=RCA] InterPro:IPR009071 InterPro:IPR000969
            PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:CP002686
            GenomeReviews:BA000014_GR Gene3D:2.30.29.30 InterPro:IPR011993
            GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0003700
            GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0010228 GO:GO:0005719 GO:GO:0035101
            InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
            InterPro:IPR024954 OMA:PVEVKKG EMBL:D13491 EMBL:AP002057
            EMBL:BT002507 EMBL:AK318679 EMBL:AK221855 IPI:IPI00547320
            IPI:IPI00931095 PIR:S35511 RefSeq:NP_189515.1 UniGene:At.21931
            UniGene:At.48716 ProteinModelPortal:Q05153 SMR:Q05153 STRING:Q05153
            PaxDb:Q05153 PRIDE:Q05153 EnsemblPlants:AT3G28730.1 GeneID:822505
            KEGG:ath:AT3G28730 TAIR:At3g28730 HOGENOM:HOG000241245
            InParanoid:Q05153 PhylomeDB:Q05153 ProtClustDB:CLSN2684068
            Genevestigator:Q05153 GermOnline:AT3G28730 Uniprot:Q05153
        Length = 646

 Score = 139 (54.0 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 35/98 (35%), Positives = 54/98 (55%)

Query:     6 GKGAVKKDKNEVVKPVEDRAAGK----RKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPS 61
             G G +K +K+   +P ++ ++ K    ++  + A   S+KR K  K  KKDPN PKR  S
Sbjct:   511 GVGEIK-EKSIKKEPKKEASSSKGLPPKRKTVAADEGSSKRKKPKK--KKDPNAPKRAMS 567

Query:    62 AFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
              F  F +  R   K+EHP + A   VGK  G+KW+ ++
Sbjct:   568 GFMFFSQMERDNIKKEHPGI-AFGEVGKVLGDKWRQMS 604


>SGD|S000002157 [details] [associations]
            symbol:NHP6B "High-mobility group (HMG) protein, binds to and
            remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694 "chromosome"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
            "DNA repair" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
            to DNA damage stimulus" evidence=IEA] [GO:0006338 "chromatin
            remodeling" evidence=IGI] [GO:0070898 "RNA polymerase III
            transcriptional preinitiation complex assembly" evidence=IGI;IDA]
            [GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IGI]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0031491 "nucleosome binding" evidence=ISS] InterPro:IPR009071
            SGD:S000002157 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
            GO:GO:0006355 GO:GO:0043565 GO:GO:0006281 EMBL:BK006936
            GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006366
            EMBL:X78993 GO:GO:0031491 GeneTree:ENSGT00560000076898
            HOGENOM:HOG000197861 OMA:LANPNNK OrthoDB:EOG4S7P0P GO:GO:0070898
            EMBL:X15318 EMBL:Z35957 EMBL:Z35959 EMBL:AY558566 EMBL:EF123125
            PIR:S78076 RefSeq:NP_009647.2 ProteinModelPortal:P11633 SMR:P11633
            DIP:DIP-6748N IntAct:P11633 MINT:MINT-615533 STRING:P11633
            PaxDb:P11633 PeptideAtlas:P11633 EnsemblFungi:YBR089C-A
            GeneID:852386 KEGG:sce:YBR089C-A CYGD:YBR089c-a NextBio:971195
            Genevestigator:P11633 GermOnline:YBR089C-A Uniprot:P11633
        Length = 99

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 31/95 (32%), Positives = 42/95 (44%)

Query:    31 AVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKA 90
             A  K ++   +  K     KKDPN PKR  SA+  F  E R + + E+P+V     VG+ 
Sbjct:     2 AATKEAKQPKEPKKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDV-TFGQVGRI 60

Query:    91 GGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 125
              GE+WK+LT                 YE     YN
Sbjct:    61 LGERWKALTAEEKQPYESKAQADKKRYESEKELYN 95


>RGD|1588759 [details] [associations]
            symbol:Hmgb1-ps3 "high mobility group box 1, pseudogene 3"
            species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            RGD:1588759 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            OrthoDB:EOG4KWJV1 GeneTree:ENSGT00560000076717 IPI:IPI00366734
            Ensembl:ENSRNOT00000046626 Uniprot:D3ZGW6
        Length = 212

 Score = 128 (50.1 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 38/121 (31%), Positives = 53/121 (43%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPP AF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPLAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+R   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVVKKLGEMWNNTAVDDKQPCEKKAAKLKEKYEKDIAA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162


>UNIPROTKB|Q9W602 [details] [associations]
            symbol:ssrp1 "FACT complex subunit SSRP1" species:8355
            "Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
            Pfam:PF03531 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
            Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512
            KO:K09272 InterPro:IPR024954 CTD:6749 HOVERGEN:HBG002932
            EMBL:AB004793 EMBL:BC082613 RefSeq:NP_001084164.1 UniGene:Xl.336
            ProteinModelPortal:Q9W602 PRIDE:Q9W602 GeneID:399344
            KEGG:xla:399344 Xenbase:XB-GENE-994299 Uniprot:Q9W602
        Length = 693

 Score = 138 (53.6 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 33/105 (31%), Positives = 50/105 (47%)

Query:    23 DRAAGKRKAVLKASRSSNKRTKNVKSAKK--DPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
             D    K+K   +A     K+ +    AKK  DP  PKRP SA+ ++L   R+  K E+P 
Sbjct:   506 DDDTDKKKDAKRAKIVKQKKPRKKPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENPG 565

Query:    81 VKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 125
             + +++ + K  GE WK+++                DYEK M  YN
Sbjct:   566 I-SITDLSKKAGEIWKNMSRDKKEEWDRRAEEAKRDYEKAMKEYN 609


>RGD|1560584 [details] [associations]
            symbol:RGD1560584 "similar to High mobility group protein 1
            (HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
            GeneTree:ENSGT00560000076717 IPI:IPI00559222
            Ensembl:ENSRNOT00000049438 Uniprot:D3ZIU9
        Length = 204

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 38/121 (31%), Positives = 53/121 (43%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN  KRPPSAF
Sbjct:    43 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNALKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+R   K EHP + ++  V K  GE W +                   YEK + A
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWTNTAVDDKQPCEKKAAKLKEKYEKDIAA 161

Query:   124 Y 124
             Y
Sbjct:   162 Y 162


>UNIPROTKB|Q8WW32 [details] [associations]
            symbol:HMGB4 "High mobility group protein B4" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005694 GO:GO:0003677 EMBL:CH471059 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            EMBL:AL121980 HOGENOM:HOG000197861 HOVERGEN:HBG009000 CTD:127540
            KO:K11297 OMA:RYQEEMM EMBL:DQ207367 EMBL:AK311985 EMBL:BC021180
            IPI:IPI00815726 RefSeq:NP_660206.2 UniGene:Hs.568628
            UniGene:Hs.667683 HSSP:P17741 ProteinModelPortal:Q8WW32 SMR:Q8WW32
            PhosphoSite:Q8WW32 DMDM:74730920 PRIDE:Q8WW32 DNASU:127540
            Ensembl:ENST00000519684 Ensembl:ENST00000522796 GeneID:127540
            KEGG:hsa:127540 GeneCards:GC01P034326 HGNC:HGNC:24954 HPA:HPA035699
            neXtProt:NX_Q8WW32 InParanoid:Q8WW32 PhylomeDB:Q8WW32 NextBio:82109
            Bgee:Q8WW32 CleanEx:HS_HMGB4 Genevestigator:Q8WW32 Uniprot:Q8WW32
        Length = 186

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query:    44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
             K  K  K+DP +P+RPPS+F +F ++     K+E+PN   V  V KA G+ W + TD
Sbjct:    81 KRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ-VAKATGKMWSTATD 136


>TAIR|locus:2136103 [details] [associations]
            symbol:3xHMG-box1 "3xHigh Mobility Group-box1"
            species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
            evidence=ISM] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
            EMBL:AL161531 GO:GO:0003677 GO:GO:0003700 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AF080120 EMBL:AL049876 HSSP:P07155 EMBL:AY133687 EMBL:AJ630485
            EMBL:AY568657 IPI:IPI00533286 PIR:T01926 PIR:T08187
            RefSeq:NP_192846.1 UniGene:At.33587 ProteinModelPortal:Q9T012
            SMR:Q9T012 EnsemblPlants:AT4G11080.1 GeneID:826709
            KEGG:ath:AT4G11080 TAIR:At4g11080 HOGENOM:HOG000238964
            InParanoid:Q9T012 KO:K09273 OMA:CKDQWNE PhylomeDB:Q9T012
            ProtClustDB:CLSN2686000 Genevestigator:Q9T012 Uniprot:Q9T012
        Length = 446

 Score = 124 (48.7 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 35/119 (29%), Positives = 52/119 (43%)

Query:    11 KKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKK----DPNKPKRPPSAFFVF 66
             KK++ E +K  +  A    K   K      K  +  K+ KK    DPNKPK+P S++F+F
Sbjct:   323 KKEEEEFMKLHKQEALQLLKKKEKTDNIIKKTKETAKNKKKNENVDPNKPKKPTSSYFLF 382

Query:    67 LEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 125
              ++ RK   +EHP +   S V      KW  L +                Y+K +  YN
Sbjct:   383 CKDARKSVLEEHPGINN-STVTAHISLKWMELGEEEKQVYNSKAAELMEAYKKEVEEYN 440

 Score = 113 (44.8 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
 Identities = 26/69 (37%), Positives = 40/69 (57%)

Query:    32 VLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG 91
             V +A   + K+ K +K    DP KPK+P SA+ ++  E R   K E+   K+V  V K  
Sbjct:   226 VQEAEHDNKKKAKKIK----DPLKPKQPISAYLIYANERRAALKGEN---KSVIEVAKMA 278

Query:    92 GEKWKSLTD 100
             GE+WK+L++
Sbjct:   279 GEEWKNLSE 287

 Score = 41 (19.5 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query:     2 KVTRGKGAVKKDKNEVVK--PVEDR 24
             K +R      K KNE+V+  PV D+
Sbjct:    12 KKSRNSRKALKQKNEIVESSPVSDK 36


>ASPGD|ASPL0000037691 [details] [associations]
            symbol:AN2885 species:162425 "Emericella nidulans"
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
            [GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0070898 "RNA
            polymerase III transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005694 GO:GO:0006355 GO:GO:0043565 GO:GO:0006281
            EMBL:BN001306 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AACD01000051 GO:GO:0031491 HOGENOM:HOG000197861 GO:GO:0051123
            GO:GO:0032301 OMA:FFANDNR OrthoDB:EOG4S7P0P GO:GO:0034724
            GO:GO:0070898 RefSeq:XP_660489.1 ProteinModelPortal:Q5B995
            SMR:Q5B995 STRING:Q5B995 EnsemblFungi:CADANIAT00010204
            GeneID:2874036 KEGG:ani:AN2885.2 Uniprot:Q5B995
        Length = 106

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 29/75 (38%), Positives = 37/75 (49%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXX 109
             KKDPN PKR  SA+  F  + R   ++E+P + +   VGK  GEKWKSL+D         
Sbjct:    21 KKDPNAPKRGLSAYMFFANDNRDKVREENPGI-SFGQVGKMLGEKWKSLSDKERKPYEDK 79

Query:   110 XXXXXLDYEKLMTAY 124
                    YE    AY
Sbjct:    80 AAADKKRYEDEKAAY 94


>UNIPROTKB|G4MS97 [details] [associations]
            symbol:MGG_04489 "Non-histone chromosomal protein 6"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0043565 GO:GO:0006338 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CM001231
            GO:GO:0031491 GO:GO:0051123 GO:GO:0032301 GO:GO:0034724
            GO:GO:0070898 RefSeq:XP_003710967.1 ProteinModelPortal:G4MS97
            SMR:G4MS97 EnsemblFungi:MGG_04489T0 GeneID:2678075
            KEGG:mgr:MGG_04489 Uniprot:G4MS97
        Length = 101

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 33/90 (36%), Positives = 43/90 (47%)

Query:    35 ASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEK 94
             A++ S K  K  + AKKDP  PKR  SA+  F  E R   ++E+P V     VGK  GE+
Sbjct:     5 ATKKSAKPEK--RRAKKDPMAPKRGLSAYMFFANEQRDNVREENPGV-TFGQVGKILGER 61

Query:    95 WKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             WK+L+D                YE    AY
Sbjct:    62 WKALSDKQRAPYDAKAAADKKRYEDEKAAY 91


>TAIR|locus:2128504 [details] [associations]
            symbol:3xHMG-box2 "3xHigh Mobility Group-box2"
            species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
            evidence=ISM] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0003677 "DNA
            binding" evidence=IDA] [GO:0000226 "microtubule cytoskeleton
            organization" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
            formation" evidence=RCA] [GO:0006084 "acetyl-CoA metabolic process"
            evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
            [GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016572
            "histone phosphorylation" evidence=RCA] [GO:0042127 "regulation of
            cell proliferation" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
            GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 EMBL:AL161560 EMBL:AL035394 HSSP:P07155
            HOGENOM:HOG000238964 KO:K09273 ProtClustDB:CLSN2686000
            EMBL:AY074353 EMBL:AY096398 EMBL:AY125491 IPI:IPI00533790
            PIR:T05612 RefSeq:NP_194111.1 UniGene:At.2572 UniGene:At.71059
            ProteinModelPortal:Q9SUP7 SMR:Q9SUP7 STRING:Q9SUP7 PaxDb:Q9SUP7
            PRIDE:Q9SUP7 EnsemblPlants:AT4G23800.1 GeneID:828480
            KEGG:ath:AT4G23800 TAIR:At4g23800 eggNOG:NOG327891
            InParanoid:Q9SUP7 OMA:FCNERRA PhylomeDB:Q9SUP7
            Genevestigator:Q9SUP7 Uniprot:Q9SUP7
        Length = 456

 Score = 131 (51.2 bits), Expect = 8.1e-08, P = 8.1e-08
 Identities = 34/117 (29%), Positives = 52/117 (44%)

Query:    11 KKDKNEVVKPVEDRAAGKRKAVLKASR--SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLE 68
             KK++ E++K  +  A    K   K        K TK  K+   DPNKPK+P S++F+F +
Sbjct:   332 KKEEEELLKLHKQEALQMLKKKEKTDNLIKKEKATKKKKNENVDPNKPKKPASSYFLFSK 391

Query:    69 EFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 125
             + RK   +E P     +        KWK L++                Y+K + AYN
Sbjct:   392 DERKKLTEERPGTNNATVTALIS-LKWKELSEEEKQVYNGKAAKLMEAYKKEVEAYN 447

 Score = 122 (48.0 bits), Expect = 7.6e-07, P = 7.6e-07
 Identities = 29/68 (42%), Positives = 42/68 (61%)

Query:    33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
             ++ +   NK+ KN K  +KDP KPK P SAF V+  E R   ++E+   K+V  V K  G
Sbjct:   235 VQEAEQDNKK-KNKK--EKDPLKPKHPVSAFLVYANERRAALREEN---KSVVEVAKITG 288

Query:    93 EKWKSLTD 100
             E+WK+L+D
Sbjct:   289 EEWKNLSD 296


>CGD|CAF0007020 [details] [associations]
            symbol:NHP6A species:5476 "Candida albicans" [GO:0003677 "DNA
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
            evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
            [GO:0034724 "DNA replication-independent nucleosome organization"
            evidence=IEA] [GO:0070898 "RNA polymerase III transcriptional
            preinitiation complex assembly" evidence=IEA] [GO:0051123 "RNA
            polymerase II transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0008301 "DNA binding, bending" evidence=IEA] InterPro:IPR009071
            CGD:CAF0007020 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
            GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
            eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 EMBL:AACQ01000005 EMBL:AACQ01000006 EMBL:AF196333
            ProteinModelPortal:Q9UVL1 SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
        Length = 92

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 29/84 (34%), Positives = 40/84 (47%)

Query:    41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
             +R K+ +  KKDP+ PKR  SA+  F  E R + + E+P + +   VGK  GEKWK+L  
Sbjct:     5 ERKKSSRK-KKDPDAPKRSLSAYMFFANENRDIVRAENPGI-SFGQVGKLLGEKWKALNS 62

Query:   101 XXXXXXXXXXXXXXLDYEKLMTAY 124
                             YEK    Y
Sbjct:    63 EDKLPYENKAEADKKRYEKEKAEY 86


>UNIPROTKB|Q9UVL1 [details] [associations]
            symbol:NHP6 "Non-histone chromosomal protein 6"
            species:237561 "Candida albicans SC5314" [GO:0003677 "DNA binding"
            evidence=IDA] InterPro:IPR009071 CGD:CAF0007020 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006281 GO:GO:0006351 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AACQ01000005
            EMBL:AACQ01000006 EMBL:AF196333 ProteinModelPortal:Q9UVL1
            SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
        Length = 92

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 29/84 (34%), Positives = 40/84 (47%)

Query:    41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
             +R K+ +  KKDP+ PKR  SA+  F  E R + + E+P + +   VGK  GEKWK+L  
Sbjct:     5 ERKKSSRK-KKDPDAPKRSLSAYMFFANENRDIVRAENPGI-SFGQVGKLLGEKWKALNS 62

Query:   101 XXXXXXXXXXXXXXLDYEKLMTAY 124
                             YEK    Y
Sbjct:    63 EDKLPYENKAEADKKRYEKEKAEY 86


>UNIPROTKB|P23497 [details] [associations]
            symbol:SP100 "Nuclear autoantigen Sp-100" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0019048
            "virus-host interaction" evidence=IEA] [GO:0019904 "protein domain
            specific binding" evidence=IPI] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0016605 "PML
            body" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS]
            [GO:0060333 "interferon-gamma-mediated signaling pathway"
            evidence=IC;TAS] [GO:0005730 "nucleolus" evidence=IMP;IDA]
            [GO:0032526 "response to retinoic acid" evidence=IDA] [GO:0034097
            "response to cytokine stimulus" evidence=IDA] [GO:0034399 "nuclear
            periphery" evidence=IDA] [GO:0048384 "retinoic acid receptor
            signaling pathway" evidence=IC] [GO:0003713 "transcription
            coactivator activity" evidence=IDA] [GO:0051091 "positive
            regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IDA] [GO:0006978 "DNA damage response, signal
            transduction by p53 class mediator resulting in transcription of
            p21 class mediator" evidence=IDA] [GO:0034340 "response to type I
            interferon" evidence=IDA;IMP] [GO:0034341 "response to
            interferon-gamma" evidence=IDA;IMP] [GO:0060337 "type I
            interferon-mediated signaling pathway" evidence=IC] [GO:0070087
            "chromo shadow domain binding" evidence=IPI] [GO:0042802 "identical
            protein binding" evidence=IPI] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IMP;IDA] [GO:0019900 "kinase
            binding" evidence=IPI] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IDA;IMP] [GO:0003714
            "transcription corepressor activity" evidence=IDA] [GO:0043392
            "negative regulation of DNA binding" evidence=IDA] [GO:0043433
            "negative regulation of sequence-specific DNA binding transcription
            factor activity" evidence=IDA] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0051271 "negative regulation of cellular component movement"
            evidence=IMP] [GO:0032897 "negative regulation of viral
            transcription" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0042803 "protein homodimerization activity" evidence=IPI]
            [GO:0008134 "transcription factor binding" evidence=IPI]
            InterPro:IPR009071 InterPro:IPR000770 InterPro:IPR004865
            Pfam:PF01342 Pfam:PF03172 PROSITE:PS50864 PROSITE:PS51414
            SMART:SM00258 Pfam:PF00505 GO:GO:0005737 Reactome:REACT_6900
            GO:GO:0003714 GO:GO:0045892 GO:GO:0019048 GO:GO:0045893
            GO:GO:0060333 GO:GO:0060337 GO:GO:0051091 GO:GO:0005730
            GO:GO:0003677 GO:GO:0016605 GO:GO:0034097 GO:GO:0000122
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0003713 GO:GO:0032526 GO:GO:0051271 GO:GO:0043433
            Gene3D:3.10.390.10 InterPro:IPR010919 SUPFAM:SSF63763 GO:GO:0048384
            GO:GO:0034399 GO:GO:0006978 Pfam:PF09011 GO:GO:0043392
            OrthoDB:EOG44QT09 GO:GO:0034340 GO:GO:0032897 EMBL:AC009949
            EMBL:U36501 EMBL:AF056322 EMBL:M60618 EMBL:AF255565 EMBL:AK293373
            EMBL:AC010149 EMBL:BC011562 EMBL:X95472 EMBL:L79986 EMBL:L79987
            EMBL:L79988 EMBL:AF076675 EMBL:AF378670 IPI:IPI00011675
            IPI:IPI00218324 IPI:IPI00218325 IPI:IPI00218326 IPI:IPI00218327
            IPI:IPI00917048 IPI:IPI00917345 PIR:A37244 RefSeq:NP_001073860.1
            RefSeq:NP_001193630.1 RefSeq:NP_001193631.1 RefSeq:NP_001193632.1
            RefSeq:NP_001193633.1 RefSeq:NP_003104.2 UniGene:Hs.369056 PDB:1H5P
            PDBsum:1H5P ProteinModelPortal:P23497 SMR:P23497 DIP:DIP-5983N
            IntAct:P23497 MINT:MINT-1188807 STRING:P23497 PhosphoSite:P23497
            DMDM:13878931 PaxDb:P23497 PRIDE:P23497 Ensembl:ENST00000264052
            Ensembl:ENST00000340126 Ensembl:ENST00000409341
            Ensembl:ENST00000409897 Ensembl:ENST00000427101 GeneID:6672
            KEGG:hsa:6672 UCSC:uc002vqq.2 UCSC:uc002vqt.3 UCSC:uc002vqu.1
            UCSC:uc010zmb.2 CTD:6672 GeneCards:GC02P231280 HGNC:HGNC:11206
            HPA:HPA016707 HPA:HPA017384 MIM:604585 neXtProt:NX_P23497
            PharmGKB:PA36043 eggNOG:NOG249894 HOVERGEN:HBG057632 KO:K15413
            OMA:TESCEQV ChiTaRS:SP100 EvolutionaryTrace:P23497 GenomeRNAi:6672
            NextBio:26015 ArrayExpress:P23497 Bgee:P23497 CleanEx:HS_SP100
            Genevestigator:P23497 GermOnline:ENSG00000067066 Uniprot:P23497
        Length = 879

 Score = 129 (50.5 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 38/121 (31%), Positives = 52/121 (42%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRT-------KNVKSAK-KDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R        K  K  K KDPN PKRPP AF
Sbjct:   717 KKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGEKKKKFKDPNAPKRPPLAF 776

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+R   K EHP +     V K  G  W +                   Y+K + A
Sbjct:   777 FLFCSEYRPKIKGEHPGLSIDDVVKKLAG-MWNNTAAADKQFYEKKAAKLKEKYKKDIAA 835

Query:   124 Y 124
             Y
Sbjct:   836 Y 836


>DICTYBASE|DDB_G0270260 [details] [associations]
            symbol:nhp6 "HMG1/2 (high mobility group)
            box-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006325 "chromatin organization"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0000790 "nuclear chromatin" evidence=ISS] [GO:0006974 "response
            to DNA damage stimulus" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006281 "DNA
            repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR009071 dictyBase:DDB_G0270260 Pfam:PF00505
            EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003677
            GO:GO:0006281 GO:GO:0006357 GO:GO:0006351 GO:GO:0003682
            eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0000790 GO:GO:0006325 HSSP:P63159
            RefSeq:XP_646657.1 ProteinModelPortal:Q55C24 STRING:Q55C24
            EnsemblProtists:DDB0216420 GeneID:8617629 KEGG:ddi:DDB_G0270260
            OMA:ERVKNAN Uniprot:Q55C24
        Length = 141

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 27/85 (31%), Positives = 39/85 (45%)

Query:    15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
             +E  K V+     K K   K S+   K  K  K   KD N P+R  S F  F ++ R V 
Sbjct:    12 SESEKKVKKTPVKKPKKEPKVSKKGKKEGKKTKKKPKDENAPRRYLSPFIFFSKDHRSVI 71

Query:    75 KQEHPNVKAVSAVGKAGGEKWKSLT 99
             K  HPN  +   +G   G++W  ++
Sbjct:    72 KNSHPNC-SFGEIGSLLGQEWAKIS 95


>UNIPROTKB|F1M1H9 [details] [associations]
            symbol:F1M1H9 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 IPI:IPI00949462
            Ensembl:ENSRNOT00000052187 Uniprot:F1M1H9
        Length = 179

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 35/121 (28%), Positives = 51/121 (42%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDP+ P+RPP AF
Sbjct:    44 KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPDAPRRPPLAF 103

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
             F+F  E+    K EHP + ++  V K  GE W +                   YEK   A
Sbjct:   104 FLFCSEYHPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKEKYEKDNAA 162

Query:   124 Y 124
             Y
Sbjct:   163 Y 163


>UNIPROTKB|Q32L34 [details] [associations]
            symbol:HMGB4 "High mobility group protein B4" species:9913
            "Bos taurus" [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
            HOVERGEN:HBG009000 EMBL:BC109790 IPI:IPI00760422
            RefSeq:NP_001035652.1 UniGene:Bt.54197 ProteinModelPortal:Q32L34
            Ensembl:ENSBTAT00000000438 GeneID:539195 KEGG:bta:539195 CTD:127540
            InParanoid:Q32L34 KO:K11297 OMA:RYQEEMM OrthoDB:EOG4255TS
            NextBio:20877839 Uniprot:Q32L34
        Length = 194

 Score = 116 (45.9 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query:    47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
             K  K+DP+ P+RPPS+F +F ++     K E+P+   V  V KA G+ W + TD
Sbjct:    84 KRRKRDPHAPRRPPSSFLLFCQDHYAQLKSENPSWSVVQ-VAKASGKMWSAKTD 136


>RGD|1594733 [details] [associations]
            symbol:LOC690521 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001074673 Ncbi:XP_001074673
        Length = 213

 Score = 117 (46.2 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 38/121 (31%), Positives = 52/121 (42%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
             K  +E  K +  +  GK + + KA ++  +R            K   KDPN PKRPPSAF
Sbjct:    43 KKCSERWKAMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTA 123
              +F  E+R   K EHP + ++  V K  GE W +                   YEK   A
Sbjct:   103 -LFCSEYRPKIKGEHPAL-SIGDVTKKLGEVWTNTASDDKQPCEKMAAKLKEKYEKDTAA 160

Query:   124 Y 124
             Y
Sbjct:   161 Y 161

 Score = 90 (36.7 bits), Expect = 0.00058, P = 0.00058
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKAMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>UNIPROTKB|F1M607 [details] [associations]
            symbol:F1M607 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
            IPI:IPI00558117 Ensembl:ENSRNOT00000046997 Uniprot:F1M607
        Length = 211

 Score = 116 (45.9 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 37/120 (30%), Positives = 53/120 (44%)

Query:     5 RGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFF 64
             R K    K+K E     + +A  +R+  +K   S    TK      +DP+ PKR PSAFF
Sbjct:    45 RWKTMSAKEKGEFENMAKAKARHERE--MKTYISPKGETKE---KVRDPSAPKRLPSAFF 99

Query:    65 VFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             +   E+R   K EHP + ++  V +  GE W + T                 YEK + AY
Sbjct:   100 LLCSEYRPKIKGEHPGL-SIGDVARKLGEMWNN-TAADDKQPCEKAAKLKEKYEKDIAAY 157


>POMBASE|SPBC28F2.11 [details] [associations]
            symbol:SPBC28F2.11 "HMG box protein" species:4896
            "Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=ISM]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=NAS] [GO:0043066 "negative regulation of
            apoptotic process" evidence=IGI] InterPro:IPR009071
            PomBase:SPBC28F2.11 GO:GO:0005794 GO:GO:0043066 GO:GO:0006355
            GO:GO:0003677 EMBL:CU329671 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P63159
            OrthoDB:EOG4RV61X PIR:T40054 RefSeq:NP_595672.1
            ProteinModelPortal:Q9USU7 STRING:Q9USU7 EnsemblFungi:SPBC28F2.11.1
            GeneID:2540337 KEGG:spo:SPBC28F2.11 eggNOG:NOG246329
            NextBio:20801465 Uniprot:Q9USU7
        Length = 310

 Score = 120 (47.3 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 40/116 (34%), Positives = 53/116 (45%)

Query:    11 KKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEF 70
             KK     V PVE  +A      + AS + NKR    K+  +DP +PKRPPSA+ +F +  
Sbjct:    79 KKATPAAVAPVEATSAVDTSEAV-ASMTPNKR----KA--RDPAQPKRPPSAYNLFQKNQ 131

Query:    71 RKVYKQE-HPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 125
             R   K+        V  V KA  EKW SL++                YE+ M AYN
Sbjct:   132 RSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEEEASKLREAYEEEMAAYN 187


>MGI|MGI:1916567 [details] [associations]
            symbol:Hmgb4 "high-mobility group box 4" species:10090 "Mus
            musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
            InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1916567 Pfam:PF00505
            GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
            HOVERGEN:HBG009000 CTD:127540 KO:K11297 OMA:RYQEEMM
            OrthoDB:EOG4255TS HSSP:P17741 EMBL:AK005588 EMBL:BC061030
            IPI:IPI00118961 RefSeq:NP_081312.2 UniGene:Mm.331893
            ProteinModelPortal:Q6P8W9 SMR:Q6P8W9 PhosphoSite:Q6P8W9
            PRIDE:Q6P8W9 Ensembl:ENSMUST00000053830 GeneID:69317 KEGG:mmu:69317
            eggNOG:NOG288392 InParanoid:Q6P8W9 NextBio:329122 Bgee:Q6P8W9
            CleanEx:MM_HMGB4 Genevestigator:Q6P8W9 Uniprot:Q6P8W9
        Length = 181

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query:    44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
             K  K  K+DP  P++PPS+F +F  +   + KQE+P+   V  V KA G+ W S TD
Sbjct:    81 KRRKRRKRDPKAPRKPPSSFLLFSRDHYAMLKQENPDWTVVQ-VAKAAGKMW-STTD 135


>SGD|S000004676 [details] [associations]
            symbol:ABF2 "Mitochondrial DNA-binding protein" species:4932
            "Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
            evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0090139
            "mitochondrial DNA packaging" evidence=IMP] [GO:0000001
            "mitochondrion inheritance" evidence=IMP] [GO:0000002
            "mitochondrial genome maintenance" evidence=IMP] [GO:0003677 "DNA
            binding" evidence=IEA;IDA] [GO:0000262 "mitochondrial chromosome"
            evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
            [GO:0042645 "mitochondrial nucleoid" evidence=IDA]
            InterPro:IPR009071 SGD:S000004676 Pfam:PF00505 GO:GO:0005634
            EMBL:M73753 EMBL:AJ223169 EMBL:Z48952 EMBL:AY557967 EMBL:BK006946
            PIR:A41302 RefSeq:NP_013788.1 ProteinModelPortal:Q02486 SMR:Q02486
            DIP:DIP-5492N IntAct:Q02486 MINT:MINT-505363 STRING:Q02486
            PaxDb:Q02486 PeptideAtlas:Q02486 EnsemblFungi:YMR072W GeneID:855094
            KEGG:sce:YMR072W CYGD:YMR072w eggNOG:COG5648
            GeneTree:ENSGT00680000100562 OMA:FHESSKP OrthoDB:EOG483HF0
            NextBio:978405 Genevestigator:Q02486 GermOnline:YMR072W
            GO:GO:0000262 GO:GO:0008301 GO:GO:0090139 GO:GO:0000001
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Uniprot:Q02486
        Length = 183

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 27/84 (32%), Positives = 49/84 (58%)

Query:    15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
             +E  KP+ + A+     +LKAS+ +  R + +K        PKRP SA+F++L++ R  +
Sbjct:    12 HESSKPLFNLAS----TLLKASKRTQLRNELIKQG------PKRPTSAYFLYLQDHRSQF 61

Query:    75 KQEHPNVKAVSAVGKAGGEKWKSL 98
              +E+P ++    + K  GEKW++L
Sbjct:    62 VKENPTLRPAE-ISKIAGEKWQNL 84


>FB|FBgn0004362 [details] [associations]
            symbol:HmgD "High mobility group protein D" species:7227
            "Drosophila melanogaster" [GO:0000790 "nuclear chromatin"
            evidence=IDA] [GO:0006325 "chromatin organization" evidence=IDA]
            [GO:0003680 "AT DNA binding" evidence=IDA] [GO:0008301 "DNA
            binding, bending" evidence=IDA;NAS] [GO:0007517 "muscle organ
            development" evidence=IMP] [GO:0048813 "dendrite morphogenesis"
            evidence=IMP] InterPro:IPR009071 Pfam:PF00505 EMBL:AE013599
            GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048813
            GO:GO:0007517 GO:GO:0006325 GO:GO:0003680 eggNOG:NOG320947
            EMBL:M77023 EMBL:X71138 EMBL:AM294353 EMBL:AM294354 EMBL:AM294355
            EMBL:AM294356 EMBL:AM294357 EMBL:AM294358 EMBL:AM294359
            EMBL:AM294360 EMBL:AM294361 EMBL:AM294362 EMBL:AM294363
            EMBL:AY118333 PIR:A44382 RefSeq:NP_001163244.1 RefSeq:NP_726109.1
            RefSeq:NP_726110.1 UniGene:Dm.7318 PDB:1E7J PDB:1HMA PDB:1QRV
            PDB:3NM9 PDBsum:1E7J PDBsum:1HMA PDBsum:1QRV PDBsum:3NM9
            ProteinModelPortal:Q05783 SMR:Q05783 DIP:DIP-22805N IntAct:Q05783
            MINT:MINT-843935 STRING:Q05783 PaxDb:Q05783 PRIDE:Q05783
            EnsemblMetazoa:FBtr0071708 EnsemblMetazoa:FBtr0071709
            EnsemblMetazoa:FBtr0301410 GeneID:37481 KEGG:dme:Dmel_CG17950
            CTD:37481 FlyBase:FBgn0004362 GeneTree:ENSGT00700000104547
            InParanoid:Q05783 OMA:WRAMSEQ OrthoDB:EOG4TX98R PhylomeDB:Q05783
            ChiTaRS:HmgD EvolutionaryTrace:Q05783 GenomeRNAi:37481
            NextBio:803865 Bgee:Q05783 GermOnline:CG17950 Uniprot:Q05783
        Length = 112

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 21/47 (44%), Positives = 33/47 (70%)

Query:    54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
             +KPKRP SA+ ++L   R+  K+E+P +K V+ V K GGE W+++ D
Sbjct:     3 DKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD 48


>GENEDB_PFALCIPARUM|PFL0145c [details] [associations]
            symbol:PFL0145c "high mobility group protein"
            species:5833 "Plasmodium falciparum" [GO:0005634 "nucleus"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0000785 "chromatin" evidence=ISS] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 GO:GO:0000785 GO:GO:0003682
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AE014188 HOGENOM:HOG000197861 HSSP:P11632 OMA:FFANDNR
            GenomeReviews:AE014188_GR RefSeq:XP_001350438.1
            ProteinModelPortal:Q8I616 EnsemblProtists:PFL0145c:mRNA
            GeneID:811082 KEGG:pfa:PFL0145c EuPathDB:PlasmoDB:PF3D7_1202900
            ProtClustDB:PTZ00199 Uniprot:Q8I616
        Length = 97

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 28/89 (31%), Positives = 40/89 (44%)

Query:    37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV-KAVSAVGKAGGEKW 95
             +++ K  +  +  KKDP+ PKR  SA+  F +E R     + P + K V+ VGK  GE W
Sbjct:     2 KNTGKEVRKRRKNKKDPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAW 61

Query:    96 KSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
               L +              L YEK    Y
Sbjct:    62 NKLGEKEKAPFEKKAQEDKLRYEKEKAEY 90


>UNIPROTKB|Q8I616 [details] [associations]
            symbol:HMGB1 "High mobility group protein" species:36329
            "Plasmodium falciparum 3D7" [GO:0000785 "chromatin" evidence=ISS]
            [GO:0003682 "chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0000785 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AE014188 HOGENOM:HOG000197861
            HSSP:P11632 OMA:FFANDNR GenomeReviews:AE014188_GR
            RefSeq:XP_001350438.1 ProteinModelPortal:Q8I616
            EnsemblProtists:PFL0145c:mRNA GeneID:811082 KEGG:pfa:PFL0145c
            EuPathDB:PlasmoDB:PF3D7_1202900 ProtClustDB:PTZ00199 Uniprot:Q8I616
        Length = 97

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 28/89 (31%), Positives = 40/89 (44%)

Query:    37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV-KAVSAVGKAGGEKW 95
             +++ K  +  +  KKDP+ PKR  SA+  F +E R     + P + K V+ VGK  GE W
Sbjct:     2 KNTGKEVRKRRKNKKDPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAW 61

Query:    96 KSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
               L +              L YEK    Y
Sbjct:    62 NKLGEKEKAPFEKKAQEDKLRYEKEKAEY 90


>UNIPROTKB|E1BQV6 [details] [associations]
            symbol:TOX3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0034056
            "estrogen response element binding" evidence=IEA] [GO:0042803
            "protein homodimerization activity" evidence=IEA] [GO:0043524
            "negative regulation of neuron apoptotic process" evidence=IEA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0051219 "phosphoprotein binding" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0043524
            GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0034056 GeneTree:ENSGT00560000076898
            OMA:HSLIMRS EMBL:AADN02038322 EMBL:AADN02038323 EMBL:AADN02038324
            EMBL:AADN02038325 EMBL:AADN02038326 EMBL:AADN02038327
            EMBL:AADN02038328 EMBL:AADN02038329 IPI:IPI00576205
            Ensembl:ENSGALT00000005929 ArrayExpress:E1BQV6 Uniprot:E1BQV6
        Length = 580

 Score = 120 (47.3 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 32/110 (29%), Positives = 48/110 (43%)

Query:    15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
             NE      +RA G+++A   A  S  K     K  KKDPN+P++P SA+ +F  + +   
Sbjct:   222 NEEDADESNRATGEKRA---APDSGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAI 278

Query:    75 KQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             K ++PN      V K     W SL +               +Y K + AY
Sbjct:   279 KGQNPNA-TFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAY 327


>ZFIN|ZDB-GENE-031118-9 [details] [associations]
            symbol:ssrp1a "structure specific recognition protein
            1a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
            Pfam:PF03531 ZFIN:ZDB-GENE-031118-9 GO:GO:0005634 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
            InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX510356
            IPI:IPI00487997 Ensembl:ENSDART00000137795 ArrayExpress:F1QEB4
            Bgee:F1QEB4 Uniprot:F1QEB4
        Length = 705

 Score = 121 (47.7 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 33/102 (32%), Positives = 45/102 (44%)

Query:    27 GKRKAVLKASRSSNKRTKNVKSAK----KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
             GK+K V K  +   K  K  K  K    KD   PKRP SA+ ++L   R+  K E+P + 
Sbjct:   513 GKKKKVEKKPKKVVKEKKERKPRKEKKVKDAAAPKRPMSAYMLWLNGNRERIKSENPGI- 571

Query:    83 AVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             +++ + K  GE WK L                  YEK M  Y
Sbjct:   572 SITEISKKAGEMWKQLGKDKKEEWDKKAEEAKRQYEKAMKEY 613


>UNIPROTKB|F1REZ8 [details] [associations]
            symbol:TOX3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0051219 "phosphoprotein binding" evidence=IEA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
            process" evidence=IEA] [GO:0042803 "protein homodimerization
            activity" evidence=IEA] [GO:0034056 "estrogen response element
            binding" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
            GO:GO:0043524 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
            GeneTree:ENSGT00560000076898 OMA:HSLIMRS EMBL:CU442721
            EMBL:CU457410 Ensembl:ENSSSCT00000003136 Uniprot:F1REZ8
        Length = 542

 Score = 119 (46.9 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 32/110 (29%), Positives = 48/110 (43%)

Query:    15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
             NE      +RA G+++A   A  S  K     K  KKDPN+P++P SA+ +F  + +   
Sbjct:   188 NEEDADESNRAIGEKRA---APDSGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAI 244

Query:    75 KQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             K ++PN      V K     W SL +               +Y K + AY
Sbjct:   245 KGQNPNA-TFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAY 293


>UNIPROTKB|E1BKT2 [details] [associations]
            symbol:TOX3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0051219 "phosphoprotein binding" evidence=IEA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
            process" evidence=IEA] [GO:0042803 "protein homodimerization
            activity" evidence=IEA] [GO:0034056 "estrogen response element
            binding" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
            GO:GO:0043524 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
            GeneTree:ENSGT00560000076898 CTD:27324 OMA:HSLIMRS
            EMBL:DAAA02046427 EMBL:DAAA02046428 EMBL:DAAA02046429
            EMBL:DAAA02046430 IPI:IPI00715207 RefSeq:XP_002694823.1
            RefSeq:XP_885168.3 ProteinModelPortal:E1BKT2
            Ensembl:ENSBTAT00000000539 GeneID:539135 KEGG:bta:539135
            NextBio:20877802 Uniprot:E1BKT2
        Length = 556

 Score = 118 (46.6 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 32/110 (29%), Positives = 48/110 (43%)

Query:    15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
             NE      +RA G+++A   A  S  K     K  KKDPN+P++P SA+ +F  + +   
Sbjct:   217 NEEDADETNRAIGEKRA---APDSGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAI 273

Query:    75 KQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             K ++PN      V K     W SL +               +Y K + AY
Sbjct:   274 KGQNPNA-TFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAY 322


>UNIPROTKB|O15405 [details] [associations]
            symbol:TOX3 "TOX high mobility group box family member 3"
            species:9606 "Homo sapiens" [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0051219
            "phosphoprotein binding" evidence=IPI] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0042803 "protein
            homodimerization activity" evidence=IDA] [GO:0034056 "estrogen
            response element binding" evidence=IDA] [GO:0003682 "chromatin
            binding" evidence=IDA] [GO:0043524 "negative regulation of neuron
            apoptotic process" evidence=IDA] InterPro:IPR009071 PROSITE:PS00353
            Pfam:PF00505 GO:GO:0005634 GO:GO:0006915 GO:GO:0045893
            GO:GO:0042803 GO:GO:0043524 GO:GO:0006351 GO:GO:0003682
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0034056 HOGENOM:HOG000230949 HOVERGEN:HBG051183 EMBL:AK299202
            EMBL:AC007490 EMBL:U80736 IPI:IPI00903025 IPI:IPI00929129
            RefSeq:NP_001073899.2 RefSeq:NP_001139660.1 UniGene:Hs.460789
            HSSP:Q66JW3 ProteinModelPortal:O15405 SMR:O15405 STRING:O15405
            PhosphoSite:O15405 PaxDb:O15405 PRIDE:O15405 DNASU:27324
            Ensembl:ENST00000219746 Ensembl:ENST00000407228 GeneID:27324
            KEGG:hsa:27324 UCSC:uc002egw.2 CTD:27324 GeneCards:GC16M052471
            H-InvDB:HIX0013031 HGNC:HGNC:11972 HPA:HPA040376 MIM:611416
            neXtProt:NX_O15405 PharmGKB:PA162406752 eggNOG:NOG284736
            OMA:HSLIMRS ChiTaRS:TOX3 GenomeRNAi:27324 NextBio:50340
            ArrayExpress:O15405 Bgee:O15405 CleanEx:HS_TOX3
            Genevestigator:O15405 Uniprot:O15405
        Length = 576

 Score = 118 (46.6 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 32/110 (29%), Positives = 48/110 (43%)

Query:    15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
             NE      +RA G+++A   A  S  K     K  KKDPN+P++P SA+ +F  + +   
Sbjct:   217 NEEDADEANRAIGEKRA---APDSGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAI 273

Query:    75 KQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             K ++PN      V K     W SL +               +Y K + AY
Sbjct:   274 KGQNPNA-TFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAY 322


>UNIPROTKB|F1N1P2 [details] [associations]
            symbol:F1N1P2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02056400
            IPI:IPI00904552 Ensembl:ENSBTAT00000020361 Uniprot:F1N1P2
        Length = 199

 Score = 109 (43.4 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
             KKDP  PKR PS   +F  EF    K  HP + ++  V K  GE W +L+D
Sbjct:    86 KKDPKAPKRLPSGCLLFCSEFHPKIKSTHPGI-SIRDVAKKLGEMWNNLSD 135


>ZFIN|ZDB-GENE-041008-209 [details] [associations]
            symbol:ssrp1b "structure specific recognition
            protein 1b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            ZFIN:ZDB-GENE-041008-209 GO:GO:0005634 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
            InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX511158
            IPI:IPI00502576 PRIDE:F6NLJ7 Ensembl:ENSDART00000131296 Bgee:F6NLJ7
            Uniprot:F6NLJ7
        Length = 703

 Score = 118 (46.6 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 28/103 (27%), Positives = 46/103 (44%)

Query:    22 EDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
             EDR   K+K+  K      ++ +  +   KD   PKRP SA+ ++L   R   K E+P +
Sbjct:   512 EDR---KKKSAKKVKFVKERKPRKKEKKVKDSGAPKRPMSAYMLWLNSSRDRIKSENPGI 568

Query:    82 KAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
              +++ + K  GE WK L                 +Y++ M  Y
Sbjct:   569 -SITEISKKAGEMWKQLGKDKKEEWDGKAEEAKKEYDRAMREY 610


>RGD|1311529 [details] [associations]
            symbol:Tox3 "TOX high mobility group box family member 3"
            species:10116 "Rattus norvegicus" [GO:0003682 "chromatin binding"
            evidence=ISO;ISS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
            evidence=IEA] [GO:0019722 "calcium-mediated signaling"
            evidence=IDA] [GO:0034056 "estrogen response element binding"
            evidence=ISO;ISS] [GO:0042803 "protein homodimerization activity"
            evidence=ISO;ISS] [GO:0043524 "negative regulation of neuron
            apoptotic process" evidence=ISO;ISS] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISO;IDA]
            [GO:0051219 "phosphoprotein binding" evidence=ISO]
            InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 RGD:1311529
            GO:GO:0005634 GO:GO:0006915 GO:GO:0045893 GO:GO:0042803
            GO:GO:0019722 GO:GO:0043524 GO:GO:0006351 GO:GO:0003682
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0034056 HOVERGEN:HBG051183 eggNOG:NOG284736 OrthoDB:EOG4K0QNS
            EMBL:EU194254 IPI:IPI00371454 UniGene:Rn.41060
            Genevestigator:B7SBD2 Uniprot:B7SBD2
        Length = 577

 Score = 115 (45.5 bits), Expect = 6.1e-06, P = 6.1e-06
 Identities = 31/110 (28%), Positives = 47/110 (42%)

Query:    15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
             NE      +RA G+++    A  S  K     K  KKDPN+P++P SA+ +F  + +   
Sbjct:   216 NEEDADETNRAVGEKRT---APDSGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAI 272

Query:    75 KQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             K ++PN      V K     W SL +               +Y K + AY
Sbjct:   273 KGQNPNA-TFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAY 321


>FB|FBgn0010228 [details] [associations]
            symbol:HmgZ "HMG protein Z" species:7227 "Drosophila
            melanogaster" [GO:0003677 "DNA binding" evidence=NAS] [GO:0005634
            "nucleus" evidence=NAS] InterPro:IPR009071 Pfam:PF00505
            EMBL:AE013599 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            eggNOG:NOG320947 GeneTree:ENSGT00700000104547 EMBL:X71139
            EMBL:AY113439 PIR:S41765 RefSeq:NP_726106.1 RefSeq:NP_726107.1
            UniGene:Dm.20604 ProteinModelPortal:Q06943 SMR:Q06943 PaxDb:Q06943
            PRIDE:Q06943 EnsemblMetazoa:FBtr0071673 EnsemblMetazoa:FBtr0071674
            GeneID:37480 KEGG:dme:Dmel_CG17921 CTD:37480 FlyBase:FBgn0010228
            InParanoid:Q06943 OMA:EANGGTD OrthoDB:EOG4W0VWS PhylomeDB:Q06943
            ChiTaRS:HmgZ GenomeRNAi:37480 NextBio:803858 Bgee:Q06943
            GermOnline:CG17921 Uniprot:Q06943
        Length = 111

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 20/47 (42%), Positives = 32/47 (68%)

Query:    54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
             ++PKRP SA+ ++L E R+  K+++P  K V+ + K GGE W+ L D
Sbjct:     4 DRPKRPLSAYMLWLNETREQIKKDNPGSK-VTDIAKRGGELWRGLKD 49


>RGD|2319002 [details] [associations]
            symbol:LOC100365478 "high-mobility group box 1-like"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            RGD:2319002 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
            IPI:IPI00958625 Ensembl:ENSRNOT00000062071 Uniprot:F1LWU2
        Length = 186

 Score = 105 (42.0 bits), Expect = 7.1e-06, P = 7.1e-06
 Identities = 33/106 (31%), Positives = 46/106 (43%)

Query:    27 GKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
             GK + + KA ++ ++R            K   KDPN  KRPPSAF +F  + R   K +H
Sbjct:    57 GKYEDMAKADKAHHEREMKTYILPKGETKKRFKDPNALKRPPSAF-LFCSDHRPKIKGKH 115

Query:    79 PNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             P + ++  V K  GE W S                   YEK + AY
Sbjct:   116 PGL-SIGDVAKNLGEMWNSTVMDDKQPSEKKATKLKETYEKDIAAY 160


>POMBASE|SPAC57A10.09c [details] [associations]
            symbol:nhp6 "High-mobility group non-histone chromatin
            protein (predicted)" species:4896 "Schizosaccharomyces pombe"
            [GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
            binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=ISO]
            [GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006359
            "regulation of transcription from RNA polymerase III promoter"
            evidence=ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] InterPro:IPR009071
            PomBase:SPAC57A10.09c Pfam:PF00505 GO:GO:0005829 EMBL:CU329670
            GenomeReviews:CU329670_GR GO:GO:0033554 GO:GO:0003677 GO:GO:0006281
            GO:GO:0045944 GO:GO:0006351 GO:GO:0006338 eggNOG:COG5648
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0000790 GO:GO:0006334 GO:GO:0006359 HOGENOM:HOG000197861
            OMA:LANPNNK OrthoDB:EOG4S7P0P PIR:T38936 RefSeq:NP_593314.1
            ProteinModelPortal:P87057 STRING:P87057
            EnsemblFungi:SPAC57A10.09c.1 GeneID:2542878 KEGG:spo:SPAC57A10.09c
            NextBio:20803918 Uniprot:P87057
        Length = 108

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 23/52 (44%), Positives = 30/52 (57%)

Query:    48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
             S KKDPN PKR  SAF  F  E R+  K ++P+      +G   G++WK LT
Sbjct:     8 SRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDA-TFGQLGSLLGKRWKELT 58


>MGI|MGI:3039593 [details] [associations]
            symbol:Tox3 "TOX high mobility group box family member 3"
            species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=ISO]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic
            process" evidence=IEA] [GO:0019722 "calcium-mediated signaling"
            evidence=ISO] [GO:0034056 "estrogen response element binding"
            evidence=ISO] [GO:0042803 "protein homodimerization activity"
            evidence=ISO] [GO:0043524 "negative regulation of neuron apoptotic
            process" evidence=ISO] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISO] [GO:0051219
            "phosphoprotein binding" evidence=ISO] InterPro:IPR009071
            PROSITE:PS00353 MGI:MGI:3039593 Pfam:PF00505 GO:GO:0005634
            GO:GO:0006915 GO:GO:0045893 GO:GO:0042803 GO:GO:0043524
            GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
            GeneTree:ENSGT00560000076898 HOGENOM:HOG000230949
            HOVERGEN:HBG051183 HSSP:Q66JW3 CTD:27324 eggNOG:NOG284736
            OMA:HSLIMRS ChiTaRS:TOX3 EMBL:AK082602 EMBL:BC052044
            IPI:IPI00330486 RefSeq:NP_766501.2 UniGene:Mm.302755
            ProteinModelPortal:Q80W03 SMR:Q80W03 STRING:Q80W03
            PhosphoSite:Q80W03 PaxDb:Q80W03 PRIDE:Q80W03
            Ensembl:ENSMUST00000109621 GeneID:244579 KEGG:mmu:244579
            UCSC:uc009msb.2 InParanoid:Q80W03 OrthoDB:EOG4K0QNS NextBio:386323
            Bgee:Q80W03 CleanEx:MM_TOX3 Genevestigator:Q80W03 Uniprot:Q80W03
        Length = 575

 Score = 113 (44.8 bits), Expect = 9.9e-06, P = 9.9e-06
 Identities = 29/102 (28%), Positives = 45/102 (44%)

Query:    23 DRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
             +RA G+++    A  S  K     K  KKDPN+P++P SA+ +F  + +   K ++PN  
Sbjct:   224 NRAIGEKRT---APDSGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNA- 279

Query:    83 AVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
                 V K     W SL +               +Y K + AY
Sbjct:   280 TFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAY 321


>RGD|1583212 [details] [associations]
            symbol:LOC685091 "similar to High mobility group protein 1
            (HMG-1) (High mobility group protein B1) (Amphoterin)
            (Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] REFSEQ:XM_001062256 Ncbi:XP_001062256
        Length = 203

 Score = 105 (42.0 bits), Expect = 9.9e-06, P = 9.9e-06
 Identities = 33/106 (31%), Positives = 46/106 (43%)

Query:    27 GKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
             GK + + KA ++ ++R            K   KDPN  KRPPSAF +F  + R   K +H
Sbjct:    65 GKYEDMAKADKAHHEREMKTYILPKGETKKRFKDPNALKRPPSAF-LFCSDHRPKIKGKH 123

Query:    79 PNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             P + ++  V K  GE W S                   YEK + AY
Sbjct:   124 PGL-SIGDVAKNLGEMWNSTVMDDKQPSEKKATKLKETYEKDIAAY 168


>GENEDB_PFALCIPARUM|MAL8P1.72 [details] [associations]
            symbol:MAL8P1.72 "high mobility group protein,
            putative" species:5833 "Plasmodium falciparum" [GO:0006359
            "regulation of transcription from RNA polymerase III promoter"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359
            EMBL:AL844507 HOGENOM:HOG000197861 HSSP:P11632
            GenomeReviews:AL844507_GR ProtClustDB:PTZ00199
            RefSeq:XP_001349346.1 ProteinModelPortal:Q8IB14 IntAct:Q8IB14
            MINT:MINT-1562034 EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422
            KEGG:pfa:MAL8P1.72 EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV
            Uniprot:Q8IB14
        Length = 99

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 30/92 (32%), Positives = 42/92 (45%)

Query:    35 ASRSSNKRTKNV-KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV-KAVSAVGKAGG 92
             AS+S  K  K   K  KKDP  PKR  SA+  ++++ R    +E P + K V+ VGK  G
Sbjct:     2 ASKSQKKVLKKQNKKKKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIG 61

Query:    93 EKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             E W  L+               + Y K +  Y
Sbjct:    62 EAWGQLSPAQKAPYEKKAQLDKVRYSKEIEEY 93


>UNIPROTKB|Q8IB14 [details] [associations]
            symbol:PfHMGB2 "High mobility group protein" species:36329
            "Plasmodium falciparum 3D7" [GO:0006359 "regulation of
            transcription from RNA polymerase III promoter" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359 EMBL:AL844507
            HOGENOM:HOG000197861 HSSP:P11632 GenomeReviews:AL844507_GR
            ProtClustDB:PTZ00199 RefSeq:XP_001349346.1
            ProteinModelPortal:Q8IB14 IntAct:Q8IB14 MINT:MINT-1562034
            EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422 KEGG:pfa:MAL8P1.72
            EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV Uniprot:Q8IB14
        Length = 99

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 30/92 (32%), Positives = 42/92 (45%)

Query:    35 ASRSSNKRTKNV-KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV-KAVSAVGKAGG 92
             AS+S  K  K   K  KKDP  PKR  SA+  ++++ R    +E P + K V+ VGK  G
Sbjct:     2 ASKSQKKVLKKQNKKKKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIG 61

Query:    93 EKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             E W  L+               + Y K +  Y
Sbjct:    62 EAWGQLSPAQKAPYEKKAQLDKVRYSKEIEEY 93


>UNIPROTKB|F1LVZ2 [details] [associations]
            symbol:F1LVZ2 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
            IPI:IPI00561233 Ensembl:ENSRNOT00000040837 Uniprot:F1LVZ2
        Length = 199

 Score = 104 (41.7 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 38/115 (33%), Positives = 51/115 (44%)

Query:    12 KDKNEVVKPVEDRAAGKRKA--VLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEE 69
             K  +E  K +  +  GKR+   V+     S   TK  K    DP+ PKRP S  F F  E
Sbjct:    42 KKCSERWKTMSAKEKGKRRLTRVVINLHPSKGETKKFK----DPSAPKRPLS-LFSFCSE 96

Query:    70 FRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             + ++ K EHP + ++  V K  GE W S TD                YEK + AY
Sbjct:    97 YPQI-KGEHPGL-SIGDVAKKLGEMWNS-TDTDKQPYGKMAAKLKEKYEKDIAAY 148


>UNIPROTKB|B4DPY8 [details] [associations]
            symbol:TOX4 "cDNA FLJ54372, highly similar to Epidermal
            Langerhans cell protein LCP1" species:9606 "Homo sapiens"
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AL161747 EMBL:AE000658 HOVERGEN:HBG051013 UniGene:Hs.555910
            HGNC:HGNC:20161 ChiTaRS:TOX4 EMBL:AK298555 IPI:IPI00879111
            SMR:B4DPY8 STRING:B4DPY8 Ensembl:ENST00000448790 UCSC:uc010tlu.2
            Uniprot:B4DPY8
        Length = 598

 Score = 112 (44.5 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 31/106 (29%), Positives = 46/106 (43%)

Query:    21 VED--RAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
             VED  R    +K V+  +    K  K  K  KKDPN+P++P SA+ +F  + +   K ++
Sbjct:   165 VEDFRRQLPSQKTVVVEAGKKQKAPK--KRKKKDPNEPQKPVSAYALFFRDTQAAIKGQN 222

Query:    79 PNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             PN      V K     W SL +               +Y K + AY
Sbjct:   223 PNA-TFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAY 267


>UNIPROTKB|O94842 [details] [associations]
            symbol:TOX4 "TOX high mobility group box family member 4"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0000785 "chromatin"
            evidence=IDA] [GO:0072357 "PTW/PP1 phosphatase complex"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357
            HOGENOM:HOG000230949 eggNOG:NOG284736 CTD:9878 HOVERGEN:HBG051013
            OMA:PPTLKMQ OrthoDB:EOG4JT05P EMBL:AB018280 EMBL:BC013689
            IPI:IPI00006586 RefSeq:NP_055643.1 UniGene:Hs.555910
            ProteinModelPortal:O94842 SMR:O94842 IntAct:O94842
            MINT:MINT-1193640 STRING:O94842 PhosphoSite:O94842 PaxDb:O94842
            PeptideAtlas:O94842 PRIDE:O94842 DNASU:9878 Ensembl:ENST00000262709
            Ensembl:ENST00000405508 GeneID:9878 KEGG:hsa:9878 UCSC:uc001way.3
            GeneCards:GC14P021944 HGNC:HGNC:20161 HPA:HPA017880 HPA:HPA027551
            MIM:614032 neXtProt:NX_O94842 PharmGKB:PA162406753
            InParanoid:O94842 PhylomeDB:O94842 ChiTaRS:TOX4 GenomeRNAi:9878
            NextBio:37229 ArrayExpress:O94842 Bgee:O94842 CleanEx:HS_TOX4
            Genevestigator:O94842 GermOnline:ENSG00000092203 Uniprot:O94842
        Length = 621

 Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 31/106 (29%), Positives = 46/106 (43%)

Query:    21 VED--RAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
             VED  R    +K V+  +    K  K  K  KKDPN+P++P SA+ +F  + +   K ++
Sbjct:   188 VEDFRRQLPSQKTVVVEAGKKQKAPK--KRKKKDPNEPQKPVSAYALFFRDTQAAIKGQN 245

Query:    79 PNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             PN      V K     W SL +               +Y K + AY
Sbjct:   246 PNA-TFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAY 290


>UNIPROTKB|Q5R6A9 [details] [associations]
            symbol:TOX4 "TOX high mobility group box family member 4"
            species:9601 "Pongo abelii" [GO:0072357 "PTW/PP1 phosphatase
            complex" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357 HOGENOM:HOG000230949
            HSSP:Q66JW3 CTD:9878 HOVERGEN:HBG051013 OrthoDB:EOG4JT05P
            EMBL:CR860582 EMBL:CR861113 RefSeq:NP_001126876.1
            RefSeq:NP_001128875.1 UniGene:Pab.18544 UniGene:Pab.19683
            GeneID:100173889 GeneID:100189804 KEGG:pon:100173889
            KEGG:pon:100189804 Uniprot:Q5R6A9
        Length = 621

 Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 31/106 (29%), Positives = 46/106 (43%)

Query:    21 VED--RAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
             VED  R    +K V+  +    K  K  K  KKDPN+P++P SA+ +F  + +   K ++
Sbjct:   188 VEDFRRQLPSQKTVVVEAGKKQKAPK--KRKKKDPNEPQKPVSAYALFFRDTQAAIKGQN 245

Query:    79 PNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             PN      V K     W SL +               +Y K + AY
Sbjct:   246 PNA-TFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAY 290


>RGD|735184 [details] [associations]
            symbol:Tox2 "TOX high mobility group box family member 2"
            species:10116 "Rattus norvegicus" [GO:0001085 "RNA polymerase II
            transcription factor binding" evidence=IPI] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0008585 "female gonad development" evidence=IEP] [GO:0034698
            "response to gonadotropin stimulus" evidence=IEP] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IDA] InterPro:IPR009071 Pfam:PF00505 RGD:735184
            GO:GO:0005634 GO:GO:0008585 GO:GO:0034698 GO:GO:0003677
            GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 CTD:84969 eggNOG:NOG291143
            HOGENOM:HOG000230949 HOVERGEN:HBG051183 EMBL:AB096685
            IPI:IPI00400737 RefSeq:NP_955424.2 UniGene:Rn.129021
            ProteinModelPortal:Q76IQ7 SMR:Q76IQ7 PRIDE:Q76IQ7 GeneID:311615
            KEGG:rno:311615 UCSC:RGD:735184 InParanoid:Q76IQ7 OrthoDB:EOG44J2JB
            NextBio:663917 ArrayExpress:Q76IQ7 Genevestigator:Q76IQ7
            GermOnline:ENSRNOG00000008146 Uniprot:Q76IQ7
        Length = 473

 Score = 109 (43.4 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 26/92 (28%), Positives = 41/92 (44%)

Query:    34 KASRSSNKRTKNVKSAKK-DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
             + S    K+ KN K  KK DPN+P++P SA+ +F  + +   K ++P+      V K   
Sbjct:   181 RPSTDPGKKAKNPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSA-TFGDVSKIVA 239

Query:    93 EKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
               W SL +               +Y K + AY
Sbjct:   240 SMWDSLGEEQKQAYKRKTEAAKKEYLKALAAY 271


>UNIPROTKB|G3XAC7 [details] [associations]
            symbol:TOX2 "Chromosome 20 open reading frame 100, isoform
            CRA_b" species:9606 "Homo sapiens" [GO:0001085 "RNA polymerase II
            transcription factor binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0008585 "female gonad development" evidence=IEA]
            [GO:0034698 "response to gonadotropin stimulus" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0005634 EMBL:CH471077 GO:GO:0045944
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AL034419 EMBL:AL121587 EMBL:AL035089 EMBL:AL353797
            UniGene:Hs.26608 GeneID:84969 KEGG:hsa:84969 CTD:84969
            HGNC:HGNC:16095 GenomeRNAi:84969 NextBio:75504
            RefSeq:NP_001092267.1 ProteinModelPortal:G3XAC7 SMR:G3XAC7
            Ensembl:ENST00000341197 OMA:DHEASYH ArrayExpress:G3XAC7 Bgee:G3XAC7
            Uniprot:G3XAC7
        Length = 506

 Score = 109 (43.4 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 26/92 (28%), Positives = 41/92 (44%)

Query:    34 KASRSSNKRTKNVKSAKK-DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
             + S    K+ KN K  KK DPN+P++P SA+ +F  + +   K ++P+      V K   
Sbjct:   223 RPSADPGKKAKNPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSA-TFGDVSKIVA 281

Query:    93 EKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
               W SL +               +Y K + AY
Sbjct:   282 SMWDSLGEEQKQAYKRKTEAAKKEYLKALAAY 313


>WB|WBGene00001974 [details] [associations]
            symbol:hmg-4 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
            "locomotion" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0007276 "gamete generation" evidence=IMP] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
            GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            GO:GO:0040011 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0040035 GO:GO:0007276
            EMBL:FO081094 GeneTree:ENSGT00700000104547 InterPro:IPR013719
            Pfam:PF08512 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
            HOGENOM:HOG000180790 OMA:PVEVKKG PIR:T16908 RefSeq:NP_498633.1
            ProteinModelPortal:P41848 SMR:P41848 DIP:DIP-26608N
            MINT:MINT-1083096 STRING:P41848 PaxDb:P41848
            EnsemblMetazoa:T20B12.8 GeneID:176052 KEGG:cel:CELE_T20B12.8
            UCSC:T20B12.8 CTD:176052 WormBase:T20B12.8 InParanoid:P41848
            NextBio:890908 Uniprot:P41848
        Length = 697

 Score = 110 (43.8 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 34/119 (28%), Positives = 47/119 (39%)

Query:     6 GKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFV 65
             G G  + D  + V     +   K K   K  R   +  K  K   KDPN PKR  SA+  
Sbjct:   508 GTGESEPDSEQDVPSKRRKGEPKEKREKKEKREKKEGKKGKKD--KDPNAPKRATSAYMQ 565

Query:    66 FLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             +    R   K++  +V   + V K GG KWK+++                 YEK M  Y
Sbjct:   566 WFLASRNELKEDGDSV---ADVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEY 621


>FB|FBgn0038978 [details] [associations]
            symbol:CG7045 species:7227 "Drosophila melanogaster"
            [GO:0005634 "nucleus" evidence=ISS] [GO:0003677 "DNA binding"
            evidence=ISS] [GO:0000785 "chromatin" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 EMBL:AE014297 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GeneTree:ENSGT00700000104547 HSSP:Q05783 OrthoDB:EOG4MCVGR
            RefSeq:NP_651055.1 UniGene:Dm.1280 ProteinModelPortal:Q9VCZ5
            SMR:Q9VCZ5 MINT:MINT-1649734 STRING:Q9VCZ5 PRIDE:Q9VCZ5
            EnsemblMetazoa:FBtr0084258 GeneID:42650 KEGG:dme:Dmel_CG7045
            UCSC:CG7045-RA FlyBase:FBgn0038978 InParanoid:Q9VCZ5
            PhylomeDB:Q9VCZ5 GenomeRNAi:42650 NextBio:829878
            ArrayExpress:Q9VCZ5 Bgee:Q9VCZ5 Uniprot:Q9VCZ5
        Length = 126

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 21/72 (29%), Positives = 36/72 (50%)

Query:    55 KPKRPPSAFFVFLEEF-RKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXX 113
             +PK+P SAF +++    RK  K EHP+  +V  V   GGE W+++ D             
Sbjct:     7 RPKKPMSAFMLWMNSTGRKHIKAEHPDF-SVQEVSVKGGEMWRAMADEDKIVWQESATTA 65

Query:   114 XLDYEKLMTAYN 125
               +Y++ +  +N
Sbjct:    66 MAEYKEKLKQWN 77


>UNIPROTKB|Q0P5K4 [details] [associations]
            symbol:TOX4 "TOX high mobility group box family member 4"
            species:9913 "Bos taurus" [GO:0072357 "PTW/PP1 phosphatase complex"
            evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0000785
            "chromatin" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
            GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GeneTree:ENSGT00560000076898 GO:GO:0072357
            HOGENOM:HOG000230949 eggNOG:NOG284736 EMBL:BC119929 IPI:IPI00689806
            RefSeq:NP_001069175.1 UniGene:Bt.51979 ProteinModelPortal:Q0P5K4
            SMR:Q0P5K4 Ensembl:ENSBTAT00000020149 GeneID:515314 KEGG:bta:515314
            CTD:9878 HOVERGEN:HBG051013 InParanoid:Q0P5K4 OMA:PPTLKMQ
            OrthoDB:EOG4JT05P NextBio:20871764 ArrayExpress:Q0P5K4
            Uniprot:Q0P5K4
        Length = 619

 Score = 108 (43.1 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 28/101 (27%), Positives = 43/101 (42%)

Query:    24 RAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA 83
             R    +K V+  +    K  K  K  KKDPN+P++P SA+ +F  + +   K ++PN   
Sbjct:   193 RQPPSQKTVVVEAGKKQKAPK--KRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-T 249

Query:    84 VSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
                V K     W SL +               +Y K + AY
Sbjct:   250 FGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAY 290


>MGI|MGI:1915389 [details] [associations]
            symbol:Tox4 "TOX high mobility group box family member 4"
            species:10090 "Mus musculus" [GO:0000785 "chromatin" evidence=ISO]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0072357 "PTW/PP1 phosphatase complex" evidence=ISO]
            InterPro:IPR009071 MGI:MGI:1915389 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00560000076898
            GO:GO:0072357 eggNOG:NOG284736 CTD:9878 HOVERGEN:HBG051013
            OMA:PPTLKMQ OrthoDB:EOG4JT05P ChiTaRS:TOX4 EMBL:AF228408
            EMBL:AK019980 EMBL:AK088144 EMBL:AK147023 EMBL:AK147834
            EMBL:BC050091 IPI:IPI00121251 RefSeq:NP_075923.2 UniGene:Mm.246237
            ProteinModelPortal:Q8BU11 SMR:Q8BU11 IntAct:Q8BU11
            PhosphoSite:Q8BU11 PaxDb:Q8BU11 PRIDE:Q8BU11
            Ensembl:ENSMUST00000022766 GeneID:268741 KEGG:mmu:268741
            InParanoid:Q3UGN7 NextBio:392465 Bgee:Q8BU11 CleanEx:MM_TOX4
            Genevestigator:Q8BU11 GermOnline:ENSMUSG00000016831 Uniprot:Q8BU11
        Length = 619

 Score = 108 (43.1 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 30/106 (28%), Positives = 46/106 (43%)

Query:    21 VED--RAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
             V+D  R    +K V+  +    K  K  K  KKDPN+P++P SA+ +F  + +   K ++
Sbjct:   188 VDDFRRQLPAQKTVVVETGKKQKAPK--KRKKKDPNEPQKPVSAYALFFRDTQAAIKGQN 245

Query:    79 PNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             PN      V K     W SL +               +Y K + AY
Sbjct:   246 PNA-TFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAY 290


>RGD|708449 [details] [associations]
            symbol:Tox4 "TOX high mobility group box family member 4"
            species:10116 "Rattus norvegicus" [GO:0000785 "chromatin"
            evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0072357 "PTW/PP1
            phosphatase complex" evidence=IEA;ISO;ISS] [GO:0005730 "nucleolus"
            evidence=ISO] InterPro:IPR009071 Pfam:PF00505 RGD:708449
            GO:GO:0005634 GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357
            HOGENOM:HOG000230949 eggNOG:NOG284736 HOVERGEN:HBG051013
            OrthoDB:EOG4JT05P EMBL:AF267197 IPI:IPI00201166 UniGene:Rn.22195
            ProteinModelPortal:Q99PM1 SMR:Q99PM1 PhosphoSite:Q99PM1
            PRIDE:Q99PM1 UCSC:RGD:708449 InParanoid:Q99PM1 ArrayExpress:Q99PM1
            Genevestigator:Q99PM1 GermOnline:ENSRNOG00000012844 Uniprot:Q99PM1
        Length = 619

 Score = 108 (43.1 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 30/106 (28%), Positives = 46/106 (43%)

Query:    21 VED--RAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
             V+D  R    +K V+  +    K  K  K  KKDPN+P++P SA+ +F  + +   K ++
Sbjct:   188 VDDFRRQLPAQKTVVVETGKKQKAPK--KRKKKDPNEPQKPVSAYALFFRDTQAAIKGQN 245

Query:    79 PNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             PN      V K     W SL +               +Y K + AY
Sbjct:   246 PNA-TFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAY 290


>UNIPROTKB|I3LAV9 [details] [associations]
            symbol:TOX4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000785 "chromatin"
            evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GeneTree:ENSGT00560000076898 GO:GO:0072357
            OMA:PPTLKMQ EMBL:CU695044 RefSeq:XP_001929153.1 UniGene:Ssc.97365
            Ensembl:ENSSSCT00000027379 GeneID:100152681 KEGG:ssc:100152681
            Uniprot:I3LAV9
        Length = 620

 Score = 108 (43.1 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 28/101 (27%), Positives = 43/101 (42%)

Query:    24 RAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA 83
             R    +K V+  +    K  K  K  KKDPN+P++P SA+ +F  + +   K ++PN   
Sbjct:   193 RQLPSQKTVVVEAGKKQKAPK--KRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-T 249

Query:    84 VSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
                V K     W SL +               +Y K + AY
Sbjct:   250 FGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAY 290


>WB|WBGene00001972 [details] [associations]
            symbol:hmg-1.2 species:6239 "Caenorhabditis elegans"
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
            regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040018 "positive regulation of multicellular organism growth"
            evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
            [GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
            [GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
            [GO:0007126 "meiosis" evidence=IMP] [GO:0001708 "cell fate
            specification" evidence=IMP] [GO:0016055 "Wnt receptor signaling
            pathway" evidence=IGI] [GO:0008406 "gonad development"
            evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
            GO:GO:0001708 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
            GO:GO:0040010 GO:GO:0008406 GO:GO:0016055 GO:GO:0003677
            GO:GO:0010171 GO:GO:0040018 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:FO080618
            GO:GO:0040035 GO:GO:0040025 Pfam:PF09011 EMBL:AF056577 PIR:T43009
            RefSeq:NP_001022599.1 RefSeq:NP_001022600.1 RefSeq:NP_498375.1
            UniGene:Cel.10345 ProteinModelPortal:Q09390 SMR:Q09390
            IntAct:Q09390 STRING:Q09390 PaxDb:Q09390 PRIDE:Q09390
            EnsemblMetazoa:F47D12.4a.1 EnsemblMetazoa:F47D12.4a.2 GeneID:175890
            KEGG:cel:CELE_F47D12.4 UCSC:F47D12.4a.1 CTD:175890
            WormBase:F47D12.4a WormBase:F47D12.4b WormBase:F47D12.4c
            GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 InParanoid:Q09390
            KO:K11295 OMA:GEDAMRK NextBio:890170 Uniprot:Q09390
        Length = 235

 Score = 101 (40.6 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 28/90 (31%), Positives = 42/90 (46%)

Query:     7 KGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVF 66
             K  V  +K    +  +  A   +  V  A+       +  K AKKDP+ PKR  SAFF +
Sbjct:    86 KTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFY 145

Query:    67 LEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
              ++ R   +  HP+ K V  V +  G+ WK
Sbjct:   146 SQDKRPEIQAGHPDWK-VGQVAQELGKMWK 174


>SGD|S000001515 [details] [associations]
            symbol:IXR1 "Protein that binds DNA intrastrand cross-links
            formed by cisplatin" species:4932 "Saccharomyces cerevisiae"
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0071456 "cellular response to hypoxia" evidence=IGI;IMP]
            [GO:0006281 "DNA repair" evidence=IGI] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IDA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR009071 SGD:S000001515 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003684 GO:GO:0043565 GO:GO:0006281
            GO:GO:0071456 GO:GO:0006351 EMBL:BK006944 GO:GO:0000122
            eggNOG:COG5648 GeneTree:ENSGT00680000100562 OrthoDB:EOG483HF0
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:X71622 EMBL:L16900 EMBL:Z28032 PIR:S37849 RefSeq:NP_012893.3
            RefSeq:NP_012897.3 ProteinModelPortal:P33417 SMR:P33417
            IntAct:P33417 STRING:P33417 PaxDb:P33417 PeptideAtlas:P33417
            EnsemblFungi:YKL032C GeneID:853836 GeneID:853840 KEGG:sce:YKL028W
            KEGG:sce:YKL032C CYGD:YKL032c KO:K03136 NextBio:975043
            Genevestigator:P33417 GermOnline:YKL032C Uniprot:P33417
        Length = 597

 Score = 105 (42.0 bits), Expect = 7.5e-05, P = 7.5e-05
 Identities = 26/69 (37%), Positives = 34/69 (49%)

Query:    32 VLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG 91
             V+K   S+  R +  K  KK    PKRP SA+F+F    R    Q+ P  K V  + K  
Sbjct:   339 VVKKLSSTQSRIERRKQLKKQG--PKRPSSAYFLFSMSIRNELLQQFPEAK-VPELSKLA 395

Query:    92 GEKWKSLTD 100
               +WK LTD
Sbjct:   396 SARWKELTD 404


>FB|FBgn0038979 [details] [associations]
            symbol:CG7046 species:7227 "Drosophila melanogaster"
            [GO:0000785 "chromatin" evidence=ISS] [GO:0003677 "DNA binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 FlyBase:FBgn0038979 EMBL:AY070828
            HSSP:Q05783 ProteinModelPortal:Q8T957 SMR:Q8T957 STRING:Q8T957
            PRIDE:Q8T957 eggNOG:NOG253857 InParanoid:Q8T957 OrthoDB:EOG4MCVGR
            ArrayExpress:Q8T957 Bgee:Q8T957 Uniprot:Q8T957
        Length = 138

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 20/72 (27%), Positives = 36/72 (50%)

Query:    55 KPKRPPSAFFVFLEEF-RKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXX 113
             +PK+P SAF +++    RK  + EHP+  +V  V   GGE W+++ D             
Sbjct:     7 RPKKPMSAFMLWMNSTGRKNIRAEHPDF-SVQEVSVKGGEMWRAMADEHKIVWQESASKA 65

Query:   114 XLDYEKLMTAYN 125
               +Y++ +  +N
Sbjct:    66 MAEYKEKLEKWN 77


>UNIPROTKB|E1C2B1 [details] [associations]
            symbol:HBP1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR013723 Pfam:PF08517 PROSITE:PS51148 Pfam:PF00505
            GO:GO:0003723 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 SUPFAM:SSF102031 CTD:26959 OMA:CCEIHIG
            GeneTree:ENSGT00390000011239 EMBL:AADN02036859 IPI:IPI00575798
            RefSeq:NP_001186383.1 UniGene:Gga.11573 Ensembl:ENSGALT00000013062
            GeneID:417705 KEGG:gga:417705 NextBio:20820962 Uniprot:E1C2B1
        Length = 517

 Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query:    34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93
             KA +S    T +  SA   PNK KRP +AF +F +++R  Y Q +P  K   A+    G+
Sbjct:   416 KAGKSHGSGTASTVSATS-PNKCKRPMNAFMLFAKKYRVEYTQMYPG-KDNRAISVILGD 473

Query:    94 KWKSL 98
             +WK +
Sbjct:   474 RWKKM 478


>UNIPROTKB|O94900 [details] [associations]
            symbol:TOX "Thymocyte selection-associated high mobility
            group box protein TOX" species:9606 "Homo sapiens" [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 HOGENOM:HOG000230949 HOVERGEN:HBG051183
            eggNOG:NOG284736 EMBL:AB018351 EMBL:BC016665 IPI:IPI00006065
            RefSeq:NP_055544.1 UniGene:Hs.491805 UniGene:Hs.634856
            ProteinModelPortal:O94900 SMR:O94900 STRING:O94900
            PhosphoSite:O94900 PaxDb:O94900 PRIDE:O94900 DNASU:9760
            Ensembl:ENST00000361421 GeneID:9760 KEGG:hsa:9760 UCSC:uc003xtw.1
            CTD:9760 GeneCards:GC08M059717 HGNC:HGNC:18988 HPA:HPA018322
            MIM:606863 neXtProt:NX_O94900 PharmGKB:PA162406704
            InParanoid:O94900 OMA:CRNPPAQ OrthoDB:EOG44XJGQ GenomeRNAi:9760
            NextBio:36737 ArrayExpress:O94900 Bgee:O94900 CleanEx:HS_TOX
            Genevestigator:O94900 GermOnline:ENSG00000198846 Uniprot:O94900
        Length = 526

 Score = 101 (40.6 bits), Expect = 0.00017, P = 0.00017
 Identities = 25/90 (27%), Positives = 37/90 (41%)

Query:    35 ASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEK 94
             AS    K     K  KKDPN+P++P SA+ +F  + +   K ++PN      V K     
Sbjct:   240 ASDMGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-TFGEVSKIVASM 298

Query:    95 WKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             W  L +               +Y K + AY
Sbjct:   299 WDGLGEEQKQVYKKKTEAAKKEYLKQLAAY 328


>MGI|MGI:2181659 [details] [associations]
            symbol:Tox "thymocyte selection-associated high mobility
            group box" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:2181659 Pfam:PF00505
            GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00560000076898
            HOGENOM:HOG000230949 HOVERGEN:HBG051183 eggNOG:NOG284736 CTD:9760
            OMA:CRNPPAQ OrthoDB:EOG44XJGQ EMBL:AF472514 EMBL:AK029694
            EMBL:AK038671 EMBL:AK051947 EMBL:BC080732 IPI:IPI00471452
            IPI:IPI00754510 RefSeq:NP_663757.3 UniGene:Mm.435828
            UniGene:Mm.488241 PDB:2CO9 PDBsum:2CO9 ProteinModelPortal:Q66JW3
            SMR:Q66JW3 PhosphoSite:Q66JW3 PaxDb:Q66JW3 PRIDE:Q66JW3
            Ensembl:ENSMUST00000039987 GeneID:252838 KEGG:mmu:252838
            UCSC:uc008rxt.1 InParanoid:Q66JW3 ChiTaRS:TOX
            EvolutionaryTrace:Q66JW3 NextBio:387345 Bgee:Q66JW3
            Genevestigator:Q66JW3 GermOnline:ENSMUSG00000041272 Uniprot:Q66JW3
        Length = 526

 Score = 101 (40.6 bits), Expect = 0.00017, P = 0.00017
 Identities = 25/90 (27%), Positives = 37/90 (41%)

Query:    35 ASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEK 94
             AS    K     K  KKDPN+P++P SA+ +F  + +   K ++PN      V K     
Sbjct:   240 ASDMGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-TFGEVSKIVASM 298

Query:    95 WKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 124
             W  L +               +Y K + AY
Sbjct:   299 WDGLGEEQKQVYKKKTEAAKKEYLKQLAAY 328


>FB|FBgn0011764 [details] [associations]
            symbol:Dsp1 "Dorsal switch protein 1" species:7227
            "Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IC;IDA]
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IMP;IDA] [GO:0043388 "positive
            regulation of DNA binding" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0017025 "TBP-class protein binding" evidence=IPI]
            [GO:0017055 "negative regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IDA]
            [GO:0032502 "developmental process" evidence=IMP] [GO:0008134
            "transcription factor binding" evidence=IPI] [GO:0006338 "chromatin
            remodeling" evidence=IMP] [GO:0007379 "segment specification"
            evidence=IMP] [GO:0008301 "DNA binding, bending" evidence=IDA]
            [GO:0035218 "leg disc development" evidence=IMP] [GO:0008348
            "negative regulation of antimicrobial humoral response"
            evidence=IGI;IMP] [GO:0005700 "polytene chromosome" evidence=IDA]
            InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            GO:GO:0005634 EMBL:AE014298 GO:GO:0006338 eggNOG:COG5648
            GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0003697 GO:GO:0007379 GO:GO:0005700
            GO:GO:0043388 Pfam:PF09011 GO:GO:0006268
            GeneTree:ENSGT00560000076898 EMBL:U13881 EMBL:X89811 EMBL:X81456
            EMBL:AY060841 PIR:JC6179 PIR:S50068 RefSeq:NP_542446.2
            RefSeq:NP_727959.2 RefSeq:NP_727960.1 RefSeq:NP_727961.1
            RefSeq:NP_996485.1 UniGene:Dm.2879 ProteinModelPortal:Q24537
            SMR:Q24537 DIP:DIP-29511N MINT:MINT-344326 STRING:Q24537
            PaxDb:Q24537 PRIDE:Q24537 EnsemblMetazoa:FBtr0089263 GeneID:117294
            KEGG:dme:Dmel_CG12223 CTD:117294 FlyBase:FBgn0011764
            InParanoid:Q24537 KO:K10802 OrthoDB:EOG480GCJ ChiTaRS:Dsp1
            GenomeRNAi:117294 NextBio:841819 Bgee:Q24537 GermOnline:CG12223
            GO:GO:0035218 GO:GO:0008348 GO:GO:0017055 Uniprot:Q24537
        Length = 393

 Score = 99 (39.9 bits), Expect = 0.00018, P = 0.00018
 Identities = 35/123 (28%), Positives = 49/123 (39%)

Query:     5 RGKGAVKKDK---NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPS 61
             R K  V K+K   +E+ +  + R   + +  +    +   R K  K  K DPN PKR  S
Sbjct:   218 RWKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIK-DPNAPKRSLS 276

Query:    62 AFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLM 121
             AFF F  + R   K  +P    V  + K  G KW  +                  YE+ M
Sbjct:   277 AFFWFCNDERNKVKALNPEF-GVGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREM 335

Query:   122 TAY 124
             T Y
Sbjct:   336 TEY 338


>FB|FBgn0030093 [details] [associations]
            symbol:dalao "dalao" species:7227 "Drosophila melanogaster"
            [GO:0003713 "transcription coactivator activity" evidence=IC]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0035060 "brahma complex" evidence=NAS;IDA;IPI]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0006338 "chromatin remodeling" evidence=IGI;IPI]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0006338
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GO:GO:0035060 HSSP:P07155 EMBL:AF348329 ProteinModelPortal:Q9BIW6
            DIP:DIP-36731N IntAct:Q9BIW6 STRING:Q9BIW6 PRIDE:Q9BIW6
            FlyBase:FBgn0030093 InParanoid:Q9BIW6 ArrayExpress:Q9BIW6
            Bgee:Q9BIW6 Uniprot:Q9BIW6
        Length = 749

 Score = 102 (41.0 bits), Expect = 0.00021, P = 0.00021
 Identities = 24/92 (26%), Positives = 42/92 (45%)

Query:    34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93
             K ++SS+ + +N     K P  P++P   +  + +      K +HP +K +  +GK  G 
Sbjct:    67 KVTKSSSSKNQNESRLPKPPKPPEKPILPYMRYSKRVWDSVKAKHPELK-LWELGKKIGA 125

Query:    94 KWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 125
              WK L +              L+YEK + AY+
Sbjct:   126 MWKLLPEDEKTEFIDEYEAEKLEYEKSLKAYH 157


>UNIPROTKB|Q5T7C0 [details] [associations]
            symbol:HMGB1 "High mobility group protein B1" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001654
            "eye development" evidence=IEA] [GO:0005125 "cytokine activity"
            evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0010858 "calcium-dependent protein kinase
            regulator activity" evidence=IEA] [GO:0030295 "protein kinase
            activator activity" evidence=IEA] [GO:0030324 "lung development"
            evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
            [GO:0045639 "positive regulation of myeloid cell differentiation"
            evidence=IEA] [GO:0045819 "positive regulation of glycogen
            catabolic process" evidence=IEA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
            [GO:2000426 "negative regulation of apoptotic cell clearance"
            evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005615 GO:GO:0003677
            GO:GO:0030324 GO:GO:0045944 GO:GO:0051384 GO:GO:0043005
            GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045819
            GO:GO:0001654 Pfam:PF09011 GO:GO:0045639 EMBL:AL353648
            UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
            UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 GO:GO:0010858
            GO:GO:2000426 EMBL:AL138681 IPI:IPI00643746 SMR:Q5T7C0
            Ensembl:ENST00000398908 Uniprot:Q5T7C0
        Length = 97

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>UNIPROTKB|D4A2L7 [details] [associations]
            symbol:D4A2L7 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 IPI:IPI00948102
            Ensembl:ENSRNOT00000030194 ArrayExpress:D4A2L7 Uniprot:D4A2L7
        Length = 135

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:    63 MAKADKARYEREMKTY 78


>ZFIN|ZDB-GENE-030131-8480 [details] [associations]
            symbol:hmgb1b "high-mobility group box 1b"
            species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
            ZFIN:ZDB-GENE-030131-8480 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
            HOVERGEN:HBG009000 eggNOG:NOG320947 EMBL:AL929092 EMBL:BC146744
            IPI:IPI00854267 UniGene:Dr.47534 SMR:A6H8T4
            Ensembl:ENSDART00000108983 NextBio:20932104 Uniprot:A6H8T4
        Length = 165

 Score = 90 (36.7 bits), Expect = 0.00028, P = 0.00028
 Identities = 20/75 (26%), Positives = 35/75 (46%)

Query:    51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXXX 109
             KDP KP+   S++  F++  R+ +K++HP      S   K   E+WK+++          
Sbjct:     3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDM 62

Query:   110 XXXXXLDYEKLMTAY 124
                  + YE+ M  Y
Sbjct:    63 AKQDKVRYEREMKNY 77


>UNIPROTKB|Q96NM4 [details] [associations]
            symbol:TOX2 "TOX high mobility group box family member 2"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 EMBL:CH471077
            GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AL034419
            EMBL:AK055135 EMBL:AK289906 EMBL:AL121587 EMBL:AL035089
            EMBL:AL353797 EMBL:BC007636 IPI:IPI00043748 IPI:IPI00219264
            IPI:IPI00412463 RefSeq:NP_001092266.1 RefSeq:NP_001092268.1
            RefSeq:NP_116272.1 UniGene:Hs.26608 ProteinModelPortal:Q96NM4
            SMR:Q96NM4 STRING:Q96NM4 PhosphoSite:Q96NM4 DMDM:24211591
            PaxDb:Q96NM4 PRIDE:Q96NM4 DNASU:84969 Ensembl:ENST00000358131
            Ensembl:ENST00000372999 Ensembl:ENST00000442881 GeneID:84969
            KEGG:hsa:84969 UCSC:uc002xlf.4 UCSC:uc010ggo.3 CTD:84969
            GeneCards:GC20P042543 HGNC:HGNC:16095 HPA:HPA049900 MIM:611163
            neXtProt:NX_Q96NM4 PharmGKB:PA162406727 eggNOG:NOG291143
            HOGENOM:HOG000230949 HOVERGEN:HBG051183 GenomeRNAi:84969
            NextBio:75504 ArrayExpress:Q96NM4 Bgee:Q96NM4 CleanEx:HS_TOX2
            Genevestigator:Q96NM4 GermOnline:ENSG00000124191 Uniprot:Q96NM4
        Length = 488

 Score = 98 (39.6 bits), Expect = 0.00032, P = 0.00032
 Identities = 22/66 (33%), Positives = 34/66 (51%)

Query:    34 KASRSSNKRTKNVKSAKK-DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
             + S    K+ KN K  KK DPN+P++P SA+ +F  + +   K ++P+      V K   
Sbjct:   232 RPSADPGKKAKNPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSA-TFGDVSKIVA 290

Query:    93 EKWKSL 98
               W SL
Sbjct:   291 SMWDSL 296


>UNIPROTKB|F1NLS2 [details] [associations]
            symbol:TFAM "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0006391
            "transcription initiation from mitochondrial promoter"
            evidence=IEA] [GO:0033108 "mitochondrial respiratory chain complex
            assembly" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
            evidence=IEA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0070363 "mitochondrial light
            strand promoter sense binding" evidence=IEA] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0045893 GO:GO:0003682 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
            GO:GO:0033108 GO:GO:0006391 GO:GO:0070363 OMA:YENEMKS
            GeneTree:ENSGT00440000039001 EMBL:AADN02035299 IPI:IPI00588565
            Ensembl:ENSGALT00000041096 ArrayExpress:F1NLS2 Uniprot:F1NLS2
        Length = 264

 Score = 94 (38.1 bits), Expect = 0.00033, P = 0.00033
 Identities = 21/76 (27%), Positives = 35/76 (46%)

Query:    49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXX 108
             A     +PKRP SA+F FL + +  ++Q++P + ++  V K  G  W+ L          
Sbjct:    40 AMSSAERPKRPLSAYFRFLRDNQPAFRQQNPELNSLELVKKLAGV-WRELPASQKQVYEE 98

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ + AY
Sbjct:    99 ARKTDWRKYEEQLAAY 114


>UNIPROTKB|Q6WKW9 [details] [associations]
            symbol:hmgxb4 "HMG box-containing protein 4" species:8355
            "Xenopus laevis" [GO:0019901 "protein kinase binding" evidence=IPI]
            [GO:0030178 "negative regulation of Wnt receptor signaling pathway"
            evidence=IMP] InterPro:IPR009071 Pfam:PF00505 GO:GO:0007275
            GO:GO:0005634 GO:GO:0016055 GO:GO:0003677 Gene3D:1.10.30.10
            SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0030178
            CTD:10042 KO:K11298 InterPro:IPR025228 Pfam:PF13775 EMBL:AY281348
            RefSeq:NP_001082746.1 UniGene:Xl.78223 HSSP:P63159
            ProteinModelPortal:Q6WKW9 GeneID:398700 KEGG:xla:398700
            Xenbase:XB-GENE-951787 Uniprot:Q6WKW9
        Length = 554

 Score = 87 (35.7 bits), Expect = 0.00038, Sum P(2) = 0.00038
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query:    47 KSAKKDPNKPKRPP-SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
             K  K+DP KPK+   SA+ VF +E+R     EHP +     + K   E WK L +
Sbjct:   349 KKKKEDPEKPKKKNMSAYQVFSKEYRVSIIAEHPGID-FGELSKKLAEVWKQLPE 402

 Score = 32 (16.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
 Identities = 8/38 (21%), Positives = 18/38 (47%)

Query:     9 AVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV 46
             A  + + E  +  +D    + +   +  +SS KR+K +
Sbjct:    22 AAGRSQREKKRSYKDLLREEEEIAEQVRKSSKKRSKEL 59

 Score = 32 (16.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query:     5 RGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKK 51
             R +   K+   ++++  E+ A   RK+  K S+  +  + N    KK
Sbjct:    25 RSQREKKRSYKDLLREEEEIAEQVRKSSKKRSKELDLFSGNELHKKK 71


>UNIPROTKB|Q5BL56 [details] [associations]
            symbol:hmgxb4 "HMG box-containing protein 4" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0019901 "protein kinase
            binding" evidence=ISS] [GO:0030178 "negative regulation of Wnt
            receptor signaling pathway" evidence=ISS] InterPro:IPR009071
            Pfam:PF00505 GO:GO:0007275 GO:GO:0005634 GO:GO:0019901
            GO:GO:0016055 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
            SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0030178 CTD:10042
            eggNOG:NOG75804 HOGENOM:HOG000112916 KO:K11298 OrthoDB:EOG4320Z2
            InterPro:IPR025228 Pfam:PF13775 HSSP:P63159 EMBL:CR760909
            EMBL:BC090595 RefSeq:NP_001025555.1 UniGene:Str.822
            ProteinModelPortal:Q5BL56 GeneID:594948 KEGG:xtr:594948
            Xenbase:XB-GENE-951781 InParanoid:Q5BL56 Uniprot:Q5BL56
        Length = 554

 Score = 87 (35.7 bits), Expect = 0.00038, Sum P(2) = 0.00038
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query:    47 KSAKKDPNKPKRPP-SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
             K  K+DP KPK+   SA+ VF +E+R     EHP +     + K   E WK L +
Sbjct:   350 KKKKEDPEKPKKKNMSAYQVFSKEYRGSIIAEHPGID-FGELSKKLAEVWKQLPE 403

 Score = 32 (16.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query:     5 RGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASR 37
             R +   K+   ++++  E+ A   RK+  K SR
Sbjct:    25 RSQREKKRSYKDLLREEEEIAEQVRKSSKKRSR 57


>WB|WBGene00001973 [details] [associations]
            symbol:hmg-3 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0051301 "cell division"
            evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0010171
            "body morphogenesis" evidence=IMP] [GO:0040018 "positive regulation
            of multicellular organism growth" evidence=IMP] [GO:0007413 "axonal
            fasciculation" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
            [GO:0048477 "oogenesis" evidence=IMP] InterPro:IPR009071
            InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
            GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
            GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
            InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            GO:GO:0010171 GO:GO:0040011 GO:GO:0040018 GO:GO:0048477
            GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0000910 GO:GO:0007413
            GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
            EMBL:FO080198 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
            HOGENOM:HOG000180790 PIR:T34025 RefSeq:NP_491688.1
            ProteinModelPortal:O01683 SMR:O01683 IntAct:O01683 STRING:O01683
            PaxDb:O01683 PRIDE:O01683 EnsemblMetazoa:C32F10.5 GeneID:172250
            KEGG:cel:CELE_C32F10.5 UCSC:C32F10.5 CTD:172250 WormBase:C32F10.5
            InParanoid:O01683 OMA:KRATTAY NextBio:874675 Uniprot:O01683
        Length = 689

 Score = 99 (39.9 bits), Expect = 0.00040, P = 0.00040
 Identities = 27/98 (27%), Positives = 41/98 (41%)

Query:     2 KVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPS 61
             K   G G    D+  +    ++    K K   K      K  K  K  K DPN+PKR  +
Sbjct:   508 KDASGTGESDPDEENIEPKKKESKEKKNKREKKEKPVKEKAVKKGKKTK-DPNEPKRATT 566

Query:    62 AFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
             A+ ++    R   K++   +     V K  G KWKS++
Sbjct:   567 AYIIWFNANRNSMKEDGDTL---GDVAKKAGAKWKSMS 601


>ZFIN|ZDB-GENE-050522-414 [details] [associations]
            symbol:hbp1 "HMG-box transcription factor 1"
            species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR013723 Pfam:PF08517 PROSITE:PS51148
            Pfam:PF00505 ZFIN:ZDB-GENE-050522-414 GO:GO:0003723
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            SUPFAM:SSF102031 eggNOG:NOG149693 HOGENOM:HOG000065753
            HOVERGEN:HBG052810 CTD:26959 OrthoDB:EOG4KKZ36 EMBL:BC095740
            IPI:IPI00481952 RefSeq:NP_001019602.2 UniGene:Dr.27055
            ProteinModelPortal:Q502D8 SMR:Q502D8 STRING:Q502D8 GeneID:554137
            KEGG:dre:554137 InParanoid:Q502D8 NextBio:20880696 Uniprot:Q502D8
        Length = 481

 Score = 96 (38.9 bits), Expect = 0.00052, P = 0.00052
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query:    35 ASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEK 94
             +S S ++R+    S+   P K KRP +AF +F +++R  Y Q +P  K   A+    G+K
Sbjct:   380 SSSSKSQRSHASGSSGATPTKCKRPMNAFMLFAKKYRVEYTQMYPG-KDNRAISVILGDK 438

Query:    95 WKSL 98
             WK +
Sbjct:   439 WKKM 442


>UNIPROTKB|Q03255 [details] [associations]
            symbol:SRY "Sex-determining region Y protein" species:9913
            "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:2000020 "positive regulation of male
            gonad development" evidence=IEA] [GO:0008134 "transcription factor
            binding" evidence=IEA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0030154 "cell differentiation" evidence=IEA] [GO:0007548 "sex
            differentiation" evidence=IEA] [GO:0005516 "calmodulin binding"
            evidence=IEA] [GO:0030238 "male sex determination" evidence=IEA]
            InterPro:IPR009071 InterPro:IPR017253 PIRSF:PIRSF037653
            Pfam:PF00505 GO:GO:0005737 GO:GO:0007423 GO:GO:0016607
            GO:GO:0003705 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 GO:GO:0009887 GO:GO:0060009 GO:GO:0060324
            GO:GO:0021983 GO:GO:0000979 GO:GO:0001106 GO:GO:0021854
            GO:GO:0048515 GeneTree:ENSGT00690000101940 GO:GO:2000020
            GO:GO:0030238 EMBL:Z30327 EMBL:U15569 EMBL:AB039748 EMBL:DQ336526
            EMBL:EU233320 EMBL:EU294189 EMBL:Z18808 EMBL:S71489 IPI:IPI00716700
            PIR:S34113 RefSeq:NP_001014407.1 UniGene:Bt.90486
            ProteinModelPortal:Q03255 SMR:Q03255 Ensembl:ENSBTAT00000062957
            GeneID:280931 KEGG:bta:280931 CTD:6736 HOVERGEN:HBG008712 KO:K09266
            OMA:QSYASAM NextBio:20805048 PANTHER:PTHR10270:SF48 Uniprot:Q03255
        Length = 229

 Score = 91 (37.1 bits), Expect = 0.00053, P = 0.00053
 Identities = 29/87 (33%), Positives = 46/87 (52%)

Query:    17 VVKPVEDRAAGKRKAVLKASRSSN---KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKV 73
             VV+     A  K  ++   S S+N   +R ++V+ + +D    KRP +AF V+  E R+ 
Sbjct:    14 VVQQQTTLAFRKDSSLCTDSHSANDQCERGEHVRESSQD--HVKRPMNAFIVWSRERRRK 71

Query:    74 YKQEHPNVKAVSAVGKAGGEKWKSLTD 100
                E+P +K  S + K  G +WK LTD
Sbjct:    72 VALENPKMKN-SDISKQLGYEWKRLTD 97


>TAIR|locus:505006631 [details] [associations]
            symbol:AT5G23405 "AT5G23405" species:3702 "Arabidopsis
            thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0006333 "chromatin assembly or
            disassembly" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            EMBL:AB018110 EMBL:AY052244 EMBL:BT020349 IPI:IPI00546033
            IPI:IPI00547115 RefSeq:NP_568430.2 RefSeq:NP_851063.1
            UniGene:At.26423 ProteinModelPortal:Q941D1 SMR:Q941D1 IntAct:Q941D1
            STRING:Q941D1 EnsemblPlants:AT5G23405.1 GeneID:832406
            KEGG:ath:AT5G23405 TAIR:At5g23405 eggNOG:NOG291653
            HOGENOM:HOG000242532 InParanoid:Q941D1 OMA:RMHICYA PhylomeDB:Q941D1
            ProtClustDB:CLSN2680197 Genevestigator:Q941D1 Uniprot:Q941D1
        Length = 149

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 23/55 (41%), Positives = 30/55 (54%)

Query:    49 AKKDP-NKPKRPPSA--FFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
             AKK P NK K   S   F VF+  FRK ++ ++ N   V    K G E WKS+T+
Sbjct:    53 AKKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDY-NGALVKEGSKIGWEMWKSMTE 106


>ZFIN|ZDB-GENE-980526-102 [details] [associations]
            symbol:sox19a "SRY-box containing gene 19a"
            species:7955 "Danio rerio" [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IDA] [GO:0005667
            "transcription factor complex" evidence=IC] [GO:0051091 "positive
            regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007275
            "multicellular organismal development" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0007399 "nervous system
            development" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
            ZFIN:ZDB-GENE-980526-102 GO:GO:0051091 GO:GO:0005667
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            GeneTree:ENSGT00690000101940 EMBL:BX119902 InterPro:IPR022097
            Pfam:PF12336 IPI:IPI00931891 Ensembl:ENSDART00000013309
            ArrayExpress:E7F9F4 Bgee:E7F9F4 Uniprot:E7F9F4
        Length = 314

 Score = 93 (37.8 bits), Expect = 0.00058, P = 0.00058
 Identities = 30/93 (32%), Positives = 44/93 (47%)

Query:    10 VKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKK-DP-NKPKRPPSAFFVFL 67
             ++ D    V P    A G  +  L+ S    K   N +  +  DP +K KRP +AF V+ 
Sbjct:     5 LEHDMKSAVPPTHQSAQGMTQ--LRWSDPRAKPAVNSQQQQSSDPMDKVKRPMNAFMVWS 62

Query:    68 EEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
                R+   QE+P +   S + K  G +WK LTD
Sbjct:    63 RGQRRKMAQENPKMHN-SEISKRLGAEWKLLTD 94


>RGD|2319567 [details] [associations]
            symbol:LOC100361707 "Ac2-008-like" species:10116 "Rattus
            norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
            PROSITE:PS00353 RGD:2319567 GO:GO:0005634 GO:GO:0003677
            Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
            Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:AC128270
            IPI:IPI00382302 Ensembl:ENSRNOT00000047163 ArrayExpress:F1LNG6
            Uniprot:F1LNG6
        Length = 219

 Score = 90 (36.7 bits), Expect = 0.00062, P = 0.00062
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query:    50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDXXXXXXXX 108
             K DP KP+   S++  F++  R+ +K++HP+     S   K   E+WK+++         
Sbjct:   131 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 190

Query:   109 XXXXXXLDYEKLMTAY 124
                     YE+ M  Y
Sbjct:   191 MAKADKARYEREMKTY 206


>RGD|620444 [details] [associations]
            symbol:Hbp1 "HMG-box transcription factor 1" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IC] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=NAS] [GO:0016055 "Wnt receptor signaling
            pathway" evidence=IEA] [GO:0043268 "positive regulation of
            potassium ion transport" evidence=IDA] InterPro:IPR009071
            InterPro:IPR003652 InterPro:IPR013723 Pfam:PF08517 PROSITE:PS51148
            SMART:SM00536 Pfam:PF00505 RGD:620444 GO:GO:0005634 GO:GO:0006355
            GO:GO:0016055 GO:GO:0003677 GO:GO:0043268 GO:GO:0006351
            GO:GO:0003723 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 SUPFAM:SSF102031 eggNOG:NOG149693
            HOGENOM:HOG000065753 HOVERGEN:HBG052810 CTD:26959 OMA:CCEIHIG
            OrthoDB:EOG4KKZ36 EMBL:U09551 EMBL:BC091165 IPI:IPI00207138
            PIR:I58311 RefSeq:NP_037353.2 UniGene:Rn.89226
            ProteinModelPortal:Q62661 SMR:Q62661 STRING:Q62661
            PhosphoSite:Q62661 PRIDE:Q62661 Ensembl:ENSRNOT00000012004
            GeneID:27080 KEGG:rno:27080 GeneTree:ENSGT00390000011239
            InParanoid:Q62661 NextBio:608045 Genevestigator:Q62661
            GermOnline:ENSRNOG00000008927 Uniprot:Q62661
        Length = 513

 Score = 95 (38.5 bits), Expect = 0.00073, P = 0.00073
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query:    38 SSNKRTKNVKS------AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG 91
             SS+  TK VKS      +   PNK KRP +AF +F +++R  Y Q +P  K   A+    
Sbjct:   409 SSSLYTKAVKSHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPG-KDNRAISVIL 467

Query:    92 GEKWKSL 98
             G++WK +
Sbjct:   468 GDRWKKM 474


>TAIR|locus:2049857 [details] [associations]
            symbol:AT2G37470 species:3702 "Arabidopsis thaliana"
            [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
            [GO:0006334 "nucleosome assembly" evidence=IEA] InterPro:IPR000558
            InterPro:IPR007125 InterPro:IPR009072 Pfam:PF00125 PRINTS:PR00621
            PROSITE:PS00357 SMART:SM00427 GO:GO:0005634 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0003677 EMBL:AC005896
            Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0006334 GO:GO:0000786
            eggNOG:NOG289161 HOGENOM:HOG000231213 KO:K11252 PANTHER:PTHR23428
            OMA:NESENHF EMBL:BT005206 EMBL:AY087125 IPI:IPI00547451 PIR:B84793
            RefSeq:NP_181283.1 UniGene:At.57996 ProteinModelPortal:Q9ZUS0
            SMR:Q9ZUS0 STRING:Q9ZUS0 PaxDb:Q9ZUS0 PRIDE:Q9ZUS0
            EnsemblPlants:AT2G37470.1 GeneID:818324 KEGG:ath:AT2G37470
            TAIR:At2g37470 InParanoid:Q9ZUS0 PhylomeDB:Q9ZUS0
            ProtClustDB:CLSN2912896 Genevestigator:Q9ZUS0 GermOnline:AT2G37470
            Uniprot:Q9ZUS0
        Length = 138

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query:    19 KPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
             KP E + AGK  A  K  ++  K +K+   ++K   K K+    + +++  F KV KQ H
Sbjct:     9 KPAEKKPAGKAPAE-KLPKAEKKISKDAGGSEKKKKKSKKSVETYKIYI--F-KVLKQVH 64

Query:    79 PNVKAVSAVGKAGG 92
             P+V  +S  GKA G
Sbjct:    65 PDV-GIS--GKAMG 75


>UNIPROTKB|F1LZ54 [details] [associations]
            symbol:F1LZ54 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
            InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
            GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
            PROSITE:PS50118 Pfam:PF09011 IPI:IPI00765905
            Ensembl:ENSRNOT00000045990 Uniprot:F1LZ54
        Length = 160

 Score = 85 (35.0 bits), Expect = 0.00096, P = 0.00096
 Identities = 31/95 (32%), Positives = 43/95 (45%)

Query:    12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRT-KNVKSAK-------KDPNKPKRPPSAF 63
             K  +E  K +  +  GK + V KA ++  +R  K   S K       KDPN  KRP    
Sbjct:    43 KKCSERWKTMSAKEKGKFEDVAKADKAHYEREMKTYISPKGETKKKFKDPNVHKRP-LLV 101

Query:    64 FVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
             F+F  E+    K EHP +     V K G E W ++
Sbjct:   102 FLFCSEYCPKIKGEHPGLSIGDVVTKLG-EMWNNI 135


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.126   0.349    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      165       111   0.00091  102 3  11 23  0.39    31
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  146
  No. of states in DFA:  522 (56 KB)
  Total size of DFA:  109 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.89u 0.08s 14.97t   Elapsed:  00:00:01
  Total cpu time:  14.90u 0.08s 14.98t   Elapsed:  00:00:01
  Start:  Fri May 10 11:10:04 2013   End:  Fri May 10 11:10:05 2013
WARNINGS ISSUED:  1
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with HMGB2 HMGB2 HMGB2 high mobility group B2	protein from Arabidopsis thaliana	1.2e-19
BLAST match view associations BLAST with HMGB4 HMGB4 HMGB4 high mobility group B4	protein from Arabidopsis thaliana	2.0e-17
BLAST match view associations BLAST with HMGB5 HMGB5 HMGB5 high mobility group B5	protein from Arabidopsis thaliana	1.4e-14
BLAST match view associations BLAST with HMGB6 HMGB6 HMGB6 high-mobility group box 6	protein from Arabidopsis thaliana	5.6e-13
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Gallus gallus	2.0e-10
BLAST match view associations BLAST with HMG1 HMG1 HMG1 High mobility group protein B1	protein from Gallus gallus	2.0e-10
BLAST match view associations BLAST with HMGB3 HMGB3 HMGB3 High mobility group protein B3	protein from Gallus gallus	4.1e-10
BLAST match view associations BLAST with SSRP1 SSRP1 SSRP1 FACT complex subunit SSRP1	protein from Gallus gallus	4.1e-10
BLAST match view associations BLAST with SSRP1 SSRP1 SSRP1 FACT complex subunit SSRP1	protein from Gallus gallus	4.1e-10
BLAST match view associations BLAST with SSRP1 SSRP1 SSRP1 FACT complex subunit SSRP1	protein from Homo sapiens	4.1e-10
BLAST match view associations BLAST with LOC690940 LOC690940 LOC690940 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)	gene from Rattus norvegicus	5.2e-10
BLAST match view associations BLAST with LOC689398 LOC689398 LOC689398 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)	gene from Rattus norvegicus	5.2e-10
BLAST match view associations BLAST with RGD1561694 RGD1561694 RGD1561694 similar to High mobility group protein 2 (HMG-2)	gene from Rattus norvegicus	5.2e-10
BLAST match view associations BLAST with hmgb1a hmgb1a hmgb1a high-mobility group box 1a	gene_product from Danio rerio	5.2e-10
BLAST match view associations BLAST with Hmgb3 Hmgb3 Hmgb3 high mobility group box 3	gene from Rattus norvegicus	6.6e-10
BLAST match view associations BLAST with RGD1559962 RGD1559962 RGD1559962 similar to High mobility group protein 2 (HMG-2)	gene from Rattus norvegicus	6.6e-10
BLAST match view associations BLAST with SSRP1 SSRP1 SSRP1 Uncharacterized protein	protein from Bos taurus	6.8e-10
BLAST match view associations BLAST with HMGB3 HMGB3 HMGB3 Uncharacterized protein	protein from Canis lupus familiaris	8.4e-10
BLAST match view associations BLAST with Hmgb3 Hmgb3 Hmgb3 high mobility group box 3	protein from Mus musculus	8.4e-10
BLAST match view associations BLAST with LOC532409 LOC532409 LOC532409 Uncharacterized protein	protein from Bos taurus	8.4e-10
BLAST match view associations BLAST with HMGB3 HMGB3 HMGB3 High mobility group protein B3	protein from Bos taurus	8.4e-10
BLAST match view associations BLAST with HMGB3 HMGB3 HMGB3 High mobility group protein B3	protein from Homo sapiens	8.4e-10
BLAST match view associations BLAST with HMGB3 HMGB3 HMGB3 High mobility group protein B3	protein from Homo sapiens	8.4e-10
BLAST match view associations BLAST with HMGB3 HMGB3 HMGB3 High mobility group protein B3	protein from Homo sapiens	8.4e-10
BLAST match view associations BLAST with LOC100517745 LOC100517745 LOC100517745 Uncharacterized protein	protein from Sus scrofa	8.4e-10
BLAST match view associations BLAST with SSRP1 SSRP1 SSRP1 Uncharacterized protein	protein from Sus scrofa	8.7e-10
BLAST match view associations BLAST with SSRP1 SSRP1 SSRP1 Uncharacterized protein	protein from Canis lupus familiaris	9.8e-10
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Gallus gallus	1.1e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Bos taurus	1.4e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Canis lupus familiaris	1.4e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Homo sapiens	1.4e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Sus scrofa	1.4e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Sus scrofa	1.4e-09
BLAST match view associations BLAST with LOC680968 LOC680968 LOC680968 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)	gene from Rattus norvegicus	1.4e-09
BLAST match view associations BLAST with LOC681718 LOC681718 LOC681718 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)	gene from Rattus norvegicus	1.4e-09
BLAST match view associations BLAST with Hmgb1 Hmgb1 Hmgb1 high mobility group box 1	gene from Rattus norvegicus	1.4e-09
BLAST match view associations BLAST with Hmg1l1 Hmg1l1 Hmg1l1 Protein Hmg1l1	protein from Rattus norvegicus	1.4e-09
BLAST match view associations BLAST with Hmg1l1 Hmg1l1 Hmg1l1 high-mobility group (nonhistone chromosomal) protein 1-like 1	gene from Rattus norvegicus	1.4e-09
BLAST match view associations BLAST with LOC618297 LOC618297 LOC618297 Uncharacterized protein	protein from Bos taurus	1.4e-09
BLAST match view associations BLAST with HMGB2 HMGB2 HMGB2 High mobility group protein B2	protein from Bos taurus	1.4e-09
BLAST match view associations BLAST with HMGB2 HMGB2 HMGB2 Uncharacterized protein	protein from Canis lupus familiaris	1.4e-09
BLAST match view associations BLAST with HMGB2 HMGB2 HMGB2 High mobility group protein B2	protein from Homo sapiens	1.4e-09
BLAST match view associations BLAST with HMGB2 HMGB2 HMGB2 High mobility group protein B2	protein from Sus scrofa	1.4e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Cricetulus griseus	1.4e-09
BLAST match view associations BLAST with RGD1564519 RGD1564519 RGD1564519 similar to High mobility group protein 2 (HMG-2)	gene from Rattus norvegicus	1.4e-09
BLAST match view associations BLAST with Hmgb2 Hmgb2 Hmgb2 high mobility group box 2	gene from Rattus norvegicus	1.4e-09
BLAST match view associations BLAST with SSRP1 SSRP1 SSRP1 Uncharacterized protein	protein from Canis lupus familiaris	1.4e-09
BLAST match view associations BLAST with LOC691220 LOC691220 LOC691220 hypothetical protein LOC691220	gene from Rattus norvegicus	1.8e-09
BLAST match view associations BLAST with LOC679451 LOC679451 LOC679451 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)	gene from Rattus norvegicus	1.8e-09
BLAST match view associations BLAST with HMGB2 HMGB2 HMGB2 High mobility group protein B2	protein from Gallus gallus	1.8e-09
BLAST match view associations BLAST with E1BIF8 E1BIF8 E1BIF8 Uncharacterized protein	protein from Bos taurus	1.8e-09
BLAST match view associations BLAST with HMGB3 HMGB3 HMGB3 High mobility group protein B3	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with LOC678705 LOC678705 LOC678705 hypothetical protein LOC678705	gene from Rattus norvegicus	2.2e-09
BLAST match view associations BLAST with E1BMK2 E1BMK2 E1BMK2 Uncharacterized protein	protein from Bos taurus	2.2e-09
BLAST match view associations BLAST with P0C6E5 P0C6E5 P0C6E5 Putative high mobility group protein B3-like protein	protein from Homo sapiens	2.2e-09
BLAST match view associations BLAST with HMGB2 HMGB2 HMGB2 High mobility group protein B2	protein from Gallus gallus	2.9e-09
BLAST match view associations BLAST with Ssrp1 Ssrp1 Ssrp1 structure specific recognition protein 1	gene from Rattus norvegicus	3.0e-09
BLAST match view associations BLAST with Ssrp1 Ssrp1 Ssrp1 structure specific recognition protein 1	protein from Mus musculus	3.8e-09
BLAST match view associations BLAST with Ssrp Ssrp Ssrp Structure specific recognition protein	protein from Drosophila melanogaster	3.9e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Canis lupus familiaris	4.7e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Homo sapiens	4.7e-09
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein B1	protein from Homo sapiens	4.7e-09
BLAST match view associations BLAST with HMGB2 HMGB2 HMGB2 High mobility group protein B2	protein from Homo sapiens	4.7e-09
BLAST match view associations BLAST with Hmgb2 Hmgb2 Hmgb2 high mobility group box 2	protein from Mus musculus	4.7e-09
BLAST match view associations BLAST with HMGB1P1 HMGB1P1 HMGB1P1 Putative high mobility group protein B1-like 1	protein from Homo sapiens	5.9e-09
BLAST match view associations BLAST with LOC679344 LOC679344 LOC679344 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)	gene from Rattus norvegicus	6.1e-09
BLAST match view associations BLAST with LOC685520 LOC685520 LOC685520 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)	gene from Rattus norvegicus	6.1e-09
BLAST match view associations BLAST with RGD1563668 RGD1563668 RGD1563668 similar to High mobility group protein 1 (HMG-1)	gene from Rattus norvegicus	9.7e-09
BLAST match view associations BLAST with NHP6A NHP6A NHP6A High-mobility group (HMG) protein, binds to and remodels nucleosomes	gene from Saccharomyces cerevisiae	1.2e-08
BLAST match view associations BLAST with hmgb3b hmgb3b hmgb3b high-mobility group box 3b	gene_product from Danio rerio	1.6e-08
BLAST match view associations BLAST with HMG HMG HMG high mobility group	protein from Arabidopsis thaliana	1.9e-08
BLAST match view associations BLAST with NHP6B NHP6B NHP6B High-mobility group (HMG) protein, binds to and remodels nucleosomes	gene from Saccharomyces cerevisiae	2.0e-08
BLAST match view associations BLAST with Hmgb1-ps3 Hmgb1-ps3 Hmgb1-ps3 high mobility group box 1, pseudogene 3	gene from Rattus norvegicus	2.3e-08
BLAST match view associations BLAST with ssrp1 ssrp1 ssrp1 FACT complex subunit SSRP1	protein from Xenopus laevis	2.7e-08
BLAST match view associations BLAST with RGD1560584 RGD1560584 RGD1560584 similar to High mobility group protein 1 (HMG-1)	gene from Rattus norvegicus	3.3e-08
BLAST match view associations BLAST with HMGB4 HMGB4 HMGB4 High mobility group protein B4	protein from Homo sapiens	4.2e-08
BLAST match view associations BLAST with 3xHMG-box1 3xHMG-box1 3xHMG-box1 3xHigh Mobility Group-box1	protein from Arabidopsis thaliana	4.6e-08
BLAST match view associations BLAST with MGG_04489 MGG_04489 MGG_04489 Non-histone chromosomal protein 6	protein from Magnaporthe oryzae 70-15	5.3e-08
BLAST match view associations BLAST with 3xHMG-box2 3xHMG-box2 3xHMG-box2 3xHigh Mobility Group-box2	protein from Arabidopsis thaliana	8.1e-08
BLAST match view associations BLAST with NHP6A NHP6A NHP6A	gene_product from Candida albicans	2.9e-07
BLAST match view associations BLAST with NHP6 NHP6 NHP6 Non-histone chromosomal protein 6	protein from Candida albicans SC5314	2.9e-07
BLAST match view associations BLAST with SP100 SP100 SP100 Nuclear autoantigen Sp-100	protein from Homo sapiens	3.3e-07
BLAST match view associations BLAST with nhp6 nhp6 nhp6 HMG1/2 (high mobility group) box-containing protein	gene from Dictyostelium discoideum	3.8e-07
BLAST match view associations BLAST with HMGB4 HMGB4 HMGB4 High mobility group protein B4	protein from Bos taurus	4.1e-07
BLAST match view associations BLAST with LOC690521 LOC690521 LOC690521 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)	gene from Rattus norvegicus	4.8e-07
BLAST match view associations BLAST with F1M607 F1M607 F1M607 Uncharacterized protein	protein from Rattus norvegicus	6.0e-07
BLAST match view associations BLAST with Hmgb4 Hmgb4 Hmgb4 high-mobility group box 4	protein from Mus musculus	7.8e-07
BLAST match view associations BLAST with ABF2 ABF2 ABF2 Mitochondrial DNA-binding protein	gene from Saccharomyces cerevisiae	7.8e-07
BLAST match view associations BLAST with HmgD HmgD HmgD High mobility group protein D	protein from Drosophila melanogaster	1.3e-06
BLAST match view associations BLAST with PFL0145c PFL0145c PFL0145c high mobility group protein	gene from Plasmodium falciparum	1.3e-06
BLAST match view associations BLAST with HMGB1 HMGB1 HMGB1 High mobility group protein	protein from Plasmodium falciparum 3D7	1.3e-06
BLAST match view associations BLAST with ssrp1a ssrp1a ssrp1a structure specific recognition protein 1a	gene_product from Danio rerio	1.8e-06
BLAST match view associations BLAST with TOX3 TOX3 TOX3 Uncharacterized protein	protein from Sus scrofa	2.1e-06
BLAST match view associations BLAST with TOX3 TOX3 TOX3 Uncharacterized protein	protein from Bos taurus	2.7e-06
BLAST match view associations BLAST with TOX3 TOX3 TOX3 TOX high mobility group box family member 3	protein from Homo sapiens	2.9e-06