Query 031104
Match_columns 165
No_of_seqs 163 out of 1135
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 14:38:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2co9_A Thymus high mobility gr 99.9 2.9E-25 1E-29 159.4 11.2 89 44-133 6-94 (102)
2 2eqz_A High mobility group pro 99.9 1E-24 3.5E-29 151.8 11.2 81 45-125 5-86 (86)
3 1k99_A Upstream binding factor 99.9 1.6E-24 5.4E-29 154.9 9.0 82 47-129 2-83 (99)
4 2lhj_A High mobility group pro 99.9 6.6E-25 2.3E-29 156.0 5.4 83 44-127 11-95 (97)
5 1hme_A High mobility group pro 99.9 2.6E-24 8.9E-29 146.4 7.9 76 50-126 1-76 (77)
6 1cg7_A Protein (NON histone pr 99.9 5.9E-25 2E-29 155.3 4.6 83 45-128 10-92 (93)
7 2crj_A SWI/SNF-related matrix- 99.9 1.7E-23 5.7E-28 147.4 10.7 78 50-128 2-79 (92)
8 2cs1_A PMS1 protein homolog 1; 99.9 1.9E-23 6.6E-28 147.1 9.5 81 50-131 2-82 (92)
9 1aab_A High mobility group pro 99.9 4.7E-24 1.6E-28 147.3 5.8 79 50-128 2-81 (83)
10 1wgf_A Upstream binding factor 99.9 2.1E-24 7.3E-29 151.5 3.9 79 44-123 9-87 (90)
11 3nm9_A HMG-D, high mobility gr 99.9 4.3E-23 1.5E-27 139.3 9.5 72 53-127 1-72 (73)
12 2e6o_A HMG box-containing prot 99.9 1.7E-23 5.9E-28 145.9 7.5 77 48-125 10-86 (87)
13 1hry_A Human SRY; DNA, DNA-bin 99.9 2.6E-23 8.9E-28 141.1 6.8 74 52-126 1-74 (76)
14 1wxl_A Single-strand recogniti 99.9 7.6E-23 2.6E-27 138.1 7.5 72 53-127 1-72 (73)
15 1j46_A SRY, sex-determining re 99.9 2.5E-22 8.6E-27 139.4 8.2 76 52-128 1-76 (85)
16 2gzk_A Sex-determining region 99.9 5.5E-22 1.9E-26 151.6 10.8 80 47-127 80-159 (159)
17 1ckt_A High mobility group 1 p 99.9 3.2E-22 1.1E-26 133.9 7.8 70 55-124 1-71 (71)
18 1wz6_A HMG-box transcription f 99.9 9.8E-23 3.3E-27 140.3 4.9 76 51-127 3-78 (82)
19 4a3n_A Transcription factor SO 99.9 2.3E-22 8E-27 134.3 5.9 71 54-125 1-71 (71)
20 1v64_A Nucleolar transcription 99.9 9.3E-22 3.2E-26 142.7 9.1 80 46-130 7-87 (108)
21 4euw_A Transcription factor SO 99.9 6.3E-22 2.1E-26 143.0 8.0 80 47-127 21-100 (106)
22 1gt0_D Transcription factor SO 99.9 6.6E-22 2.3E-26 135.5 7.6 73 54-127 1-73 (80)
23 3f27_D Transcription factor SO 99.9 5.2E-22 1.8E-26 136.7 6.9 74 52-126 3-76 (83)
24 2yrq_A High mobility group pro 99.9 2.5E-21 8.4E-26 150.1 10.8 80 47-127 93-172 (173)
25 2lef_A LEF-1 HMG, protein (lym 99.9 1.2E-21 4.1E-26 136.1 7.9 73 54-127 1-73 (86)
26 1l8y_A Upstream binding factor 99.9 1.5E-21 5.3E-26 137.7 8.2 76 54-131 3-78 (91)
27 3u2b_C Transcription factor SO 99.8 1.1E-21 3.7E-26 133.8 6.5 72 54-126 1-72 (79)
28 1i11_A Transcription factor SO 99.8 1.5E-21 5E-26 134.1 6.0 73 53-126 2-74 (81)
29 3fgh_A Transcription factor A, 99.8 4.5E-21 1.5E-25 127.3 7.3 66 54-124 1-66 (67)
30 2yrq_A High mobility group pro 99.8 1.2E-20 4E-25 146.3 10.0 85 45-129 5-90 (173)
31 1v63_A Nucleolar transcription 99.8 2.8E-20 9.6E-25 133.4 9.9 81 51-134 4-84 (101)
32 2d7l_A WD repeat and HMG-box D 99.8 2.3E-20 7.8E-25 129.0 6.5 62 51-113 1-63 (81)
33 3tmm_A Transcription factor A, 99.8 1.2E-19 4E-24 147.7 7.2 83 48-131 34-116 (238)
34 3tq6_A Transcription factor A, 99.8 2.1E-19 7.1E-24 144.2 8.2 79 52-131 6-84 (214)
35 2cto_A Novel protein; high mob 99.8 2.1E-19 7E-24 127.4 4.8 70 50-122 5-77 (93)
36 2yuk_A Myeloid/lymphoid or mix 99.8 3.5E-20 1.2E-24 130.6 -0.0 68 47-119 14-83 (90)
37 3tq6_A Transcription factor A, 99.8 7.8E-20 2.7E-24 146.7 0.7 78 47-129 106-183 (214)
38 3tmm_A Transcription factor A, 99.7 1.2E-19 4E-24 147.8 0.3 78 47-129 138-215 (238)
39 2gzk_A Sex-determining region 99.7 2.7E-17 9.1E-22 125.5 7.1 74 53-127 2-75 (159)
40 2qgu_A Probable signal peptide 65.6 6.4 0.00022 30.5 4.1 48 79-127 70-119 (211)
41 3mhp_C TIC62_peptide, ferredox 22.7 13 0.00044 19.5 -0.5 11 56-66 2-12 (26)
42 2lkw_A Membrane fusion protein 20.4 23 0.00078 18.2 0.1 11 54-64 9-19 (26)
No 1
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.92 E-value=2.9e-25 Score=159.37 Aligned_cols=89 Identities=29% Similarity=0.506 Sum_probs=82.4
Q ss_pred cccccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 031104 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (165)
Q Consensus 44 kk~~k~~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~ 123 (165)
.+++++.+||++|+||+||||||++++|..|+.+||++ ++.+|+++||++|++|++++|.+|.++|..++.+|..+|..
T Consensus 6 ~~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 84 (102)
T 2co9_A 6 SGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-TFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAA 84 (102)
T ss_dssp CCSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred HhhcCCCCcc
Q 031104 124 YNKKQESTED 133 (165)
Q Consensus 124 Y~~k~~~~~~ 133 (165)
|+.++.....
T Consensus 85 Y~~~~~~~~~ 94 (102)
T 2co9_A 85 YRASLVSKSY 94 (102)
T ss_dssp HHHHHTSSCC
T ss_pred HHhhcccccc
Confidence 9988776543
No 2
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=1e-24 Score=151.78 Aligned_cols=81 Identities=32% Similarity=0.570 Sum_probs=75.9
Q ss_pred ccccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 031104 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (165)
Q Consensus 45 k~~k~~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~-~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~ 123 (165)
++++..+||++|+||+||||||++++|..|+.+||+++ +|.+|+++||++|++|++++|.+|.++|..++++|..+|..
T Consensus 5 ~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 5 SSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp CSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566789999999999999999999999999999985 37999999999999999999999999999999999999999
Q ss_pred Hh
Q 031104 124 YN 125 (165)
Q Consensus 124 Y~ 125 (165)
|+
T Consensus 85 Y~ 86 (86)
T 2eqz_A 85 YG 86 (86)
T ss_dssp HC
T ss_pred cC
Confidence 94
No 3
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.91 E-value=1.6e-24 Score=154.92 Aligned_cols=82 Identities=26% Similarity=0.496 Sum_probs=78.0
Q ss_pred ccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 031104 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (165)
Q Consensus 47 ~k~~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~ 126 (165)
+++.+||++|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|++|.++|..++.+|..+|..|..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEM-SNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTS-CSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999 69999999999999999999999999999999999999999988
Q ss_pred cCC
Q 031104 127 KQE 129 (165)
Q Consensus 127 k~~ 129 (165)
...
T Consensus 81 ~~P 83 (99)
T 1k99_A 81 DHP 83 (99)
T ss_dssp CCC
T ss_pred HCC
Confidence 754
No 4
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.91 E-value=6.6e-25 Score=156.01 Aligned_cols=83 Identities=37% Similarity=0.692 Sum_probs=78.4
Q ss_pred cccccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHH
Q 031104 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA--VSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLM 121 (165)
Q Consensus 44 kk~~k~~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~--~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em 121 (165)
+++++..+||++|+||+||||||++++|..|+.+||++ + +.+|+++||++|++||+++|.+|.++|..++.+|..+|
T Consensus 11 ~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~-~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~ 89 (97)
T 2lhj_A 11 RRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEI-AKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREK 89 (97)
T ss_dssp CCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTS-TTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788999999999999999999999999999999 6 89999999999999999999999999999999999999
Q ss_pred HHHhhc
Q 031104 122 TAYNKK 127 (165)
Q Consensus 122 ~~Y~~k 127 (165)
..|+.+
T Consensus 90 ~~y~~~ 95 (97)
T 2lhj_A 90 AEYAQR 95 (97)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
No 5
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.90 E-value=2.6e-24 Score=146.39 Aligned_cols=76 Identities=50% Similarity=0.832 Sum_probs=73.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 031104 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (165)
Q Consensus 50 ~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~ 126 (165)
.+||++|+||+||||||++++|..|+.+||++ ++.+|+++||.+|++||+++|.+|.++|..++.+|..+|..|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37999999999999999999999999999999 79999999999999999999999999999999999999999975
No 6
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.90 E-value=5.9e-25 Score=155.25 Aligned_cols=83 Identities=45% Similarity=0.704 Sum_probs=78.5
Q ss_pred ccccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 031104 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (165)
Q Consensus 45 k~~k~~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y 124 (165)
++++..+||++|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.++|..++.+|..+|..|
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y 88 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTS-CHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778999999999999999999999999999999 699999999999999999999999999999999999999999
Q ss_pred hhcC
Q 031104 125 NKKQ 128 (165)
Q Consensus 125 ~~k~ 128 (165)
+.+.
T Consensus 89 ~~~~ 92 (93)
T 1cg7_A 89 NATL 92 (93)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 8764
No 7
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.90 E-value=1.7e-23 Score=147.41 Aligned_cols=78 Identities=29% Similarity=0.529 Sum_probs=74.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcC
Q 031104 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQ 128 (165)
Q Consensus 50 ~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~k~ 128 (165)
.+||++|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.++|..++.+|..+|..|+.+.
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~ 79 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDL-PFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSE 79 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 47999999999999999999999999999999 6999999999999999999999999999999999999999998753
No 8
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=147.08 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 031104 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQE 129 (165)
Q Consensus 50 ~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~k~~ 129 (165)
..+|++|+||+||||||++++|..|+.+||++ ++.+|+++||++|++|++++|.+|.++|..++++|..+|..|+.++.
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~ 80 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKT-SLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQES 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35799999999999999999999999999999 69999999999999999999999999999999999999999998876
Q ss_pred CC
Q 031104 130 ST 131 (165)
Q Consensus 130 ~~ 131 (165)
..
T Consensus 81 ~~ 82 (92)
T 2cs1_A 81 QM 82 (92)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 9
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.89 E-value=4.7e-24 Score=147.26 Aligned_cols=79 Identities=33% Similarity=0.570 Sum_probs=74.3
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcC
Q 031104 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQ 128 (165)
Q Consensus 50 ~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~-~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~k~ 128 (165)
.+||++|+||+||||||++++|..|+.+||+++ +|.+|+++||++|++||+++|.+|.++|..++.+|..+|..|+...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 81 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPK 81 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 479999999999999999999999999999984 3689999999999999999999999999999999999999997653
No 10
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.89 E-value=2.1e-24 Score=151.54 Aligned_cols=79 Identities=30% Similarity=0.507 Sum_probs=73.0
Q ss_pred cccccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 031104 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (165)
Q Consensus 44 kk~~k~~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~ 123 (165)
++++++.+||++|+||+||||||++++|..|+.+||++ ++.+|+++||++|++|++++|++|.++|..++.+|..+|..
T Consensus 9 ~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 87 (90)
T 1wgf_A 9 PSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPEL-SESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGP 87 (90)
T ss_dssp SCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSS
T ss_pred CCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778999999999999999999999999999999 79999999999999999999999999999999999876643
No 11
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.89 E-value=4.3e-23 Score=139.33 Aligned_cols=72 Identities=42% Similarity=0.770 Sum_probs=69.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 031104 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (165)
Q Consensus 53 p~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~k 127 (165)
.++||||+|||||||+++|..|+.+||++ ++.+|+++||++|++|++ |++|.++|..++++|..+|.+|+.+
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGI-KVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999 699999999999999998 9999999999999999999999875
No 12
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.89 E-value=1.7e-23 Score=145.92 Aligned_cols=77 Identities=26% Similarity=0.449 Sum_probs=73.6
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHh
Q 031104 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (165)
Q Consensus 48 k~~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~ 125 (165)
+..+||++|+||+||||||++++|..|+.+||++ ++.+|+++||++|++|++++|++|.++|..++++|..++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGK-DNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 4678999999999999999999999999999999 7999999999999999999999999999999999999998885
No 13
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.88 E-value=2.6e-23 Score=141.08 Aligned_cols=74 Identities=32% Similarity=0.455 Sum_probs=69.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 031104 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (165)
Q Consensus 52 dp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~ 126 (165)
||++|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.++|..++.+|..+|.+|+-
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 74 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCC-SSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 689999999999999999999999999999 69999999999999999999999999999999999999999863
No 14
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.88 E-value=7.6e-23 Score=138.12 Aligned_cols=72 Identities=38% Similarity=0.706 Sum_probs=69.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 031104 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (165)
Q Consensus 53 p~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~k 127 (165)
|++|+||+||||||++++|..|+.+||++ ++.+|+++||++|++| ++|.+|.++|..++.+|..+|..|+.+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGI-KVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTC-CHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 78999999999999999999999999999 6999999999999999 889999999999999999999999764
No 15
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.87 E-value=2.5e-22 Score=139.35 Aligned_cols=76 Identities=32% Similarity=0.454 Sum_probs=72.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcC
Q 031104 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQ 128 (165)
Q Consensus 52 dp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~k~ 128 (165)
.|++|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.++|..++.+|..+|.+|+-+-
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 76 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 489999999999999999999999999999 7999999999999999999999999999999999999999997543
No 16
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.87 E-value=5.5e-22 Score=151.64 Aligned_cols=80 Identities=50% Similarity=0.816 Sum_probs=76.1
Q ss_pred ccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 031104 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (165)
Q Consensus 47 ~k~~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~ 126 (165)
++..+||++|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|++|..+|..++.+|..+|.+|+.
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999 79999999999999999999999999999999999999999985
Q ss_pred c
Q 031104 127 K 127 (165)
Q Consensus 127 k 127 (165)
+
T Consensus 159 ~ 159 (159)
T 2gzk_A 159 K 159 (159)
T ss_dssp C
T ss_pred C
Confidence 3
No 17
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.87 E-value=3.2e-22 Score=133.94 Aligned_cols=70 Identities=33% Similarity=0.592 Sum_probs=66.8
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 031104 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (165)
Q Consensus 55 ~PKRP~sAY~lF~~e~r~~ik~~~p~~~-~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y 124 (165)
+||||+||||||++++|..|+.+||+++ +|.+|+++||++|++||+++|.+|.++|..++.+|..+|..|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5999999999999999999999999985 369999999999999999999999999999999999999877
No 18
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.86 E-value=9.8e-23 Score=140.34 Aligned_cols=76 Identities=25% Similarity=0.418 Sum_probs=72.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 031104 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (165)
Q Consensus 51 kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~k 127 (165)
.+|++|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.++|..++.+|..+|..|+.+
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~ 78 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRL-DNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSG 78 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSS-CTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcC
Confidence 5789999999999999999999999999999 699999999999999999999999999999999999999999754
No 19
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.86 E-value=2.3e-22 Score=134.32 Aligned_cols=71 Identities=31% Similarity=0.514 Sum_probs=63.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHh
Q 031104 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (165)
Q Consensus 54 ~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~ 125 (165)
+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.++|..++.+|..+|++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 5799999999999999999999999999 6999999999999999999999999999999999999999985
No 20
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.86 E-value=9.3e-22 Score=142.73 Aligned_cols=80 Identities=23% Similarity=0.384 Sum_probs=74.2
Q ss_pred cccCCCCCCCC-CCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 031104 46 VKSAKKDPNKP-KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (165)
Q Consensus 46 ~~k~~kdp~~P-KRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y 124 (165)
+.++.+||++| |||+|||||||+++|..|+ ++ ++.+|+++||++|++|++++|.+|.++|..++.+|..+|..|
T Consensus 7 ~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~-~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y 81 (108)
T 1v64_A 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DV-PSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRF 81 (108)
T ss_dssp CCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999 9999999999999999886 67 699999999999999999999999999999999999999999
Q ss_pred hhcCCC
Q 031104 125 NKKQES 130 (165)
Q Consensus 125 ~~k~~~ 130 (165)
..++..
T Consensus 82 ~~~~~~ 87 (108)
T 1v64_A 82 LESLPE 87 (108)
T ss_dssp HHHSCH
T ss_pred HhhCCH
Confidence 998864
No 21
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.86 E-value=6.3e-22 Score=142.99 Aligned_cols=80 Identities=25% Similarity=0.455 Sum_probs=70.2
Q ss_pred ccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 031104 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (165)
Q Consensus 47 ~k~~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~ 126 (165)
....++|+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|+.|++++|.+|.++|..++.+|..+|+.|+-
T Consensus 21 ~~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky 99 (106)
T 4euw_A 21 FQSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHL-HNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKY 99 (106)
T ss_dssp -------CCCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred hhccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 34567899999999999999999999999999999 79999999999999999999999999999999999999999964
Q ss_pred c
Q 031104 127 K 127 (165)
Q Consensus 127 k 127 (165)
+
T Consensus 100 ~ 100 (106)
T 4euw_A 100 Q 100 (106)
T ss_dssp -
T ss_pred C
Confidence 3
No 22
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.86 E-value=6.6e-22 Score=135.46 Aligned_cols=73 Identities=32% Similarity=0.495 Sum_probs=70.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 031104 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (165)
Q Consensus 54 ~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~k 127 (165)
+.|+||+||||||++++|..|+.+||++ ++.+|+++||.+|++||+++|.+|.++|..++.+|..+|.+|+-+
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 73 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKM-HNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYR 73 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccC
Confidence 5799999999999999999999999999 799999999999999999999999999999999999999999754
No 23
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.86 E-value=5.2e-22 Score=136.74 Aligned_cols=74 Identities=30% Similarity=0.478 Sum_probs=68.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 031104 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (165)
Q Consensus 52 dp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~ 126 (165)
.++.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++|++++|.+|.++|..++.+|..+|++|+-
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 76 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKY 76 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 468899999999999999999999999999 69999999999999999999999999999999999999999964
No 24
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=150.12 Aligned_cols=80 Identities=50% Similarity=0.816 Sum_probs=76.2
Q ss_pred ccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 031104 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (165)
Q Consensus 47 ~k~~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~ 126 (165)
+++.+||++|+||+||||||++++|..|+.+||++ ++.+|+++||.+|++||+++|++|.++|..++.+|..+|..|+.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567999999999999999999999999999999 79999999999999999999999999999999999999999987
Q ss_pred c
Q 031104 127 K 127 (165)
Q Consensus 127 k 127 (165)
+
T Consensus 172 k 172 (173)
T 2yrq_A 172 K 172 (173)
T ss_dssp C
T ss_pred c
Confidence 5
No 25
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=1.2e-21 Score=136.10 Aligned_cols=73 Identities=22% Similarity=0.388 Sum_probs=70.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 031104 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (165)
Q Consensus 54 ~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~k 127 (165)
+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.++|..++++|..+|..|+.+
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 73 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLK-ESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSAR 73 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCC-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCC
Confidence 4799999999999999999999999999 799999999999999999999999999999999999999999754
No 26
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.85 E-value=1.5e-21 Score=137.71 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=72.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 031104 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQEST 131 (165)
Q Consensus 54 ~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~k~~~~ 131 (165)
|.|+||+|||+||++++|..++..||+ ++.+|++.||++|++|++.+|++|+.+|..++.+|..+|..|+.+....
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~~ 78 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAAT 78 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 689999999999999999999999998 5899999999999999999999999999999999999999998876653
No 27
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=1.1e-21 Score=133.82 Aligned_cols=72 Identities=28% Similarity=0.476 Sum_probs=69.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 031104 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (165)
Q Consensus 54 ~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~ 126 (165)
|.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.++|..++++|..+|++|+-
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky 72 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDM-HNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKY 72 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 5799999999999999999999999999 69999999999999999999999999999999999999999964
No 28
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=1.5e-21 Score=134.12 Aligned_cols=73 Identities=27% Similarity=0.455 Sum_probs=68.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 031104 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (165)
Q Consensus 53 p~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~ 126 (165)
++.|+||+||||||++++|..|+.+||++ ++.+|+++||.+|++||+++|.+|.++|..++.+|..++++|+-
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky 74 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDM-HNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKY 74 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSC-CHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC--
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 57899999999999999999999999999 69999999999999999999999999999999999999998864
No 29
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.84 E-value=4.5e-21 Score=127.26 Aligned_cols=66 Identities=33% Similarity=0.519 Sum_probs=62.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 031104 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (165)
Q Consensus 54 ~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y 124 (165)
|+||||+|||+||++++|..|+..|| .+|+++||++|++||+++|.+|.++|..++.+|..+|.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999976654 5899999999999999999999999999999999999998
No 30
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=146.32 Aligned_cols=85 Identities=31% Similarity=0.526 Sum_probs=77.7
Q ss_pred ccccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 031104 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (165)
Q Consensus 45 k~~k~~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~-~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~ 123 (165)
+.++..+||++|+||+||||||++++|..|+.+||++. ++.+|+++||++|++||+++|.+|.++|..++.+|..+|..
T Consensus 5 ~~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (173)
T 2yrq_A 5 SSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKT 84 (173)
T ss_dssp SCSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34456789999999999999999999999999999941 69999999999999999999999999999999999999999
Q ss_pred HhhcCC
Q 031104 124 YNKKQE 129 (165)
Q Consensus 124 Y~~k~~ 129 (165)
|.....
T Consensus 85 y~~~~~ 90 (173)
T 2yrq_A 85 YIPPKG 90 (173)
T ss_dssp CCCCCC
T ss_pred hhhhhh
Confidence 976543
No 31
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.83 E-value=2.8e-20 Score=133.36 Aligned_cols=81 Identities=14% Similarity=0.293 Sum_probs=71.6
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 031104 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQES 130 (165)
Q Consensus 51 kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~k~~~ 130 (165)
...++||||+||||||+++++. ...++++ ++.+|+++||++|++|++++|++|.++|..++++|..+|..|..++.+
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~-~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~ 80 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHL-PLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSP 80 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 3567899999999999999974 2344556 689999999999999999999999999999999999999999999987
Q ss_pred Ccch
Q 031104 131 TEDE 134 (165)
Q Consensus 131 ~~~~ 134 (165)
....
T Consensus 81 ~~~~ 84 (101)
T 1v63_A 81 QDRA 84 (101)
T ss_dssp THHH
T ss_pred HHHH
Confidence 7654
No 32
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.3e-20 Score=129.05 Aligned_cols=62 Identities=23% Similarity=0.391 Sum_probs=59.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHhhcCCChhhhhHHHHHHHHH
Q 031104 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFEAKAAKR 113 (165)
Q Consensus 51 kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~-~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~ 113 (165)
.++|+||||+||||||++++|..|+.+||++ + +.+|+++||++|++|++++|++|+++|..+
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~-~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDF-SDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTC-CSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999 6 999999999999999999999999999886
No 33
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=147.75 Aligned_cols=83 Identities=17% Similarity=0.388 Sum_probs=78.0
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 031104 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (165)
Q Consensus 48 k~~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~k 127 (165)
....+|++|+||+|||+||++++|..|+.+||++ ++.+|+++||++|++|++++|.+|.++|..++++|..+|..|...
T Consensus 34 ~s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~ 112 (238)
T 3tmm_A 34 SSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ 112 (238)
T ss_dssp -CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466899999999999999999999999999999 699999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 031104 128 QEST 131 (165)
Q Consensus 128 ~~~~ 131 (165)
+++.
T Consensus 113 ~~p~ 116 (238)
T 3tmm_A 113 LTPS 116 (238)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 8754
No 34
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.78 E-value=2.1e-19 Score=144.21 Aligned_cols=79 Identities=16% Similarity=0.400 Sum_probs=75.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 031104 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQEST 131 (165)
Q Consensus 52 dp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~k~~~~ 131 (165)
.|++|+||+|||+|||+++|..|+.+||++ ++.+|+++||++|++||+++|.+|.++|..++.+|..+|..|..++++.
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp~ 84 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPS 84 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCHH
Confidence 478999999999999999999999999999 6999999999999999999999999999999999999999999888754
No 35
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-19 Score=127.37 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=64.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHH---HHhhcCCChhhhhHHHHHHHHHHHHHHHHHH
Q 031104 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG---GEKWKSLTDAEKAPFEAKAAKRKLDYEKLMT 122 (165)
Q Consensus 50 ~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~l---ge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~ 122 (165)
..++++||||+||||||++++|..|+.+ ++ ++.+|+++| |++|++|++++|++|+++|..++++|..++.
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~-~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GL-PVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TC-CCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 4578999999999999999999999988 67 688999999 9999999999999999999999999988763
No 36
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.76 E-value=3.5e-20 Score=130.56 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=62.6
Q ss_pred ccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHH
Q 031104 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA--VSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEK 119 (165)
Q Consensus 47 ~k~~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~--~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~ 119 (165)
.+..+|||+|+||+|||||||+++|..|+.+||++ + +.+|+ ++|++|++++|++|+.+|..++++|..
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~-s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~ 83 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDW-TTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRI 83 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSH-HHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCc-cchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 34456999999999999999999999999999999 7 77777 999999999999999999999999875
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.75 E-value=7.8e-20 Score=146.71 Aligned_cols=78 Identities=28% Similarity=0.378 Sum_probs=70.7
Q ss_pred ccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 031104 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (165)
Q Consensus 47 ~k~~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~ 126 (165)
++..+||++|+||+|||||||+++|..|+..| +.+|+++||++|++|++++|++|..+|..++++|..+|.+|+.
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~-----p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 180 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDS-----PQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 180 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSS-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467999999999999999999998886554 4589999999999999999999999999999999999999998
Q ss_pred cCC
Q 031104 127 KQE 129 (165)
Q Consensus 127 k~~ 129 (165)
++.
T Consensus 181 ~~~ 183 (214)
T 3tq6_A 181 QMI 183 (214)
T ss_dssp HHH
T ss_pred hCc
Confidence 863
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.74 E-value=1.2e-19 Score=147.77 Aligned_cols=78 Identities=28% Similarity=0.378 Sum_probs=70.7
Q ss_pred ccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 031104 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (165)
Q Consensus 47 ~k~~kdp~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~ 126 (165)
++..+||++|+||+|||||||+++|..|+..| +.+|+++||++|++|++++|++|..+|..++++|..+|.+|+.
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~-----p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 212 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDS-----PQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 212 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSS-----HHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999999999999998886554 4589999999999999999999999999999999999999999
Q ss_pred cCC
Q 031104 127 KQE 129 (165)
Q Consensus 127 k~~ 129 (165)
++.
T Consensus 213 k~~ 215 (238)
T 3tmm_A 213 QMI 215 (238)
T ss_dssp HHH
T ss_pred hCc
Confidence 863
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.69 E-value=2.7e-17 Score=125.52 Aligned_cols=74 Identities=32% Similarity=0.481 Sum_probs=70.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 031104 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (165)
Q Consensus 53 p~~PKRP~sAY~lF~~e~r~~ik~~~p~~~~~~ei~k~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~em~~Y~~k 127 (165)
|+.|+||+||||||+...|..|..+||++ ++.+|+++||++|++||+++|.+|.++|..++.+|..+|..|...
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~ 75 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccc
Confidence 68899999999999999999999999999 799999999999999999999999999999999999999999653
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=65.62 E-value=6.4 Score=30.49 Aligned_cols=48 Identities=10% Similarity=0.191 Sum_probs=36.9
Q ss_pred CCCccHHHHHHH-HHHhhcCCChhhhhHHHHHHHH-HHHHHHHHHHHHhhc
Q 031104 79 PNVKAVSAVGKA-GGEKWKSLTDAEKAPFEAKAAK-RKLDYEKLMTAYNKK 127 (165)
Q Consensus 79 p~~~~~~ei~k~-lge~Wk~ls~~eK~~Y~~~A~~-~k~~Y~~em~~Y~~k 127 (165)
|-. +|..|++. ||.-|+.+++++++.|...... ....|-..+..|...
T Consensus 70 p~~-D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q 119 (211)
T 2qgu_A 70 PRA-DFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQ 119 (211)
T ss_dssp GGB-CHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred hhc-CHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 444 46666665 5899999999999999987766 456688999999643
No 41
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=22.74 E-value=13 Score=19.51 Aligned_cols=11 Identities=18% Similarity=0.567 Sum_probs=8.0
Q ss_pred CCCCCChHHHH
Q 031104 56 PKRPPSAFFVF 66 (165)
Q Consensus 56 PKRP~sAY~lF 66 (165)
..||+|+|..|
T Consensus 2 ~~rPlSpy~~Y 12 (26)
T 3mhp_C 2 TEQPLSPYTAY 12 (26)
T ss_dssp CCCCSSTTTTB
T ss_pred CccccCccccc
Confidence 35888888765
No 42
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=20.44 E-value=23 Score=18.16 Aligned_cols=11 Identities=45% Similarity=0.969 Sum_probs=7.7
Q ss_pred CCCCCCCChHH
Q 031104 54 NKPKRPPSAFF 64 (165)
Q Consensus 54 ~~PKRP~sAY~ 64 (165)
.+|-+|++||+
T Consensus 9 qppapppnafv 19 (26)
T 2lkw_A 9 QPPAPPPNAFV 19 (26)
T ss_pred cCCCcCCCeeE
Confidence 35667888875
Done!