BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031107
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SSB8|CX5B2_ARATH Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis
thaliana GN=COX5B-2 PE=2 SV=1
Length = 171
Score = 192 bits (489), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 120/157 (76%), Gaps = 7/157 (4%)
Query: 1 MWRRICSSQLKAQAL--ALAQYSCRSAPVNP---SIASR--SLISRPLFASRHFSADSAG 53
MWRRI SS LK+ + + A SCR A V S+++R S+ + SR + +A
Sbjct: 1 MWRRIVSSHLKSISAVGSCAAPSCRHAVVESTHLSLSTRASSIPAYSSIFSRLIGSAAAD 60
Query: 54 TSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVG 113
T+VKKRVEDV P+ATGHE+EEL+AELEG+ + +ID+P GPFGTK+APAVVKSYYD RIVG
Sbjct: 61 TAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRIVG 120
Query: 114 CPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVV 150
CPGGEGEDEHDVVWFWLEKGK ECPVC+QYF LEVV
Sbjct: 121 CPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKLEVV 157
>sp|Q9LW15|CX5B1_ARATH Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis
thaliana GN=COX5B-1 PE=2 SV=1
Length = 176
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/175 (66%), Positives = 133/175 (76%), Gaps = 10/175 (5%)
Query: 1 MWRRICSSQLKAQALALAQYSCR------SAPVNPSIAS-RSLISRPLFA-SRHFSADSA 52
MWRRI SSQLK A + S R + PV +A+ RS IS F R FS+DS
Sbjct: 1 MWRRIVSSQLKTLAADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFSSDSV 60
Query: 53 GTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIV 112
T K+VEDV P+ATGHE+EELEAELEG+ + +ID+P GPFGTK+APA+VKSYYDKRIV
Sbjct: 61 ETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYDKRIV 120
Query: 113 GCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHG--DDDHH 165
GCPGGEGEDEHDVVWFWLEKGK ECPVC+QYF LEVVGPGGPPDGHG DD+HH
Sbjct: 121 GCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDEDDEHH 175
>sp|Q9SSS5|CX5BL_ARATH Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis
thaliana GN=At1g52710 PE=2 SV=2
Length = 90
Score = 125 bits (315), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/92 (66%), Positives = 72/92 (78%), Gaps = 7/92 (7%)
Query: 75 LEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGK 134
L+ E G+ +L+ID+P PFGTK++PAVV+SY+DKR +GC GGEGED HDVVWFWL+KGK
Sbjct: 4 LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGK 63
Query: 135 PHECPVCSQYFVLEVVGPGGPPDGHGDD-DHH 165
ECPVCSQYF GPPDGHGDD DHH
Sbjct: 64 SFECPVCSQYF------EHGPPDGHGDDEDHH 89
>sp|P00428|COX5B_BOVIN Cytochrome c oxidase subunit 5B, mitochondrial OS=Bos taurus
GN=COX5B PE=1 SV=2
Length = 129
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 31 IASRSLISRPLFASRHFSADS-AGTSVKKRVEDVNPV------ATGHEREELEAELEGKN 83
+ASR L AS+ A G SV + + V ATG ERE + A +G++
Sbjct: 1 MASRLLRGVGALASQALRARGPNGVSVVRSMASGGGVPTDEEQATGLEREVMLAARKGQD 60
Query: 84 ILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQ 143
I P GTK+ P +V S +KRIVGC ED V+WFWL KG+ CP C
Sbjct: 61 PYNILAPKATSGTKEDPNLVPSITNKRIVGCIC--EEDNSTVIWFWLHKGEAQRCPSCGT 118
Query: 144 YFVL 147
++ L
Sbjct: 119 HYKL 122
>sp|P10606|COX5B_HUMAN Cytochrome c oxidase subunit 5B, mitochondrial OS=Homo sapiens
GN=COX5B PE=1 SV=2
Length = 129
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 67 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 126
ATG ERE + A +G + + P G GT++ P +V S +KRIVGC ED VV
Sbjct: 44 ATGLEREIMLAAKKGLDPYNVLAPKGASGTREDPNLVPSISNKRIVGCIC--EEDNTSVV 101
Query: 127 WFWLEKGKPHECPVCSQYFVL 147
WFWL KG+ CP C ++ L
Sbjct: 102 WFWLHKGEAQRCPRCGAHYKL 122
>sp|Q710D6|COX5B_VULVU Cytochrome c oxidase subunit 5B, mitochondrial OS=Vulpes vulpes
GN=COX5B PE=1 SV=1
Length = 128
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 67 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 126
ATG ERE + A +G + I P GTK+ P +V S +KRIVGC ED V+
Sbjct: 43 ATGLEREVMMAARKGLDPYNILAPKAAAGTKEDPNLVPSITNKRIVGCIC--EEDNSTVI 100
Query: 127 WFWLEKGKPHECPVCSQYFVL 147
WFWL KG+ CP C ++ L
Sbjct: 101 WFWLHKGEAQRCPSCGTHYKL 121
>sp|Q5REG2|COX5B_PONAB Cytochrome c oxidase subunit 5B, mitochondrial OS=Pongo abelii
GN=COX5B PE=2 SV=1
Length = 129
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 67 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 126
ATG ERE + A +G + + P G GT++ P +V S +KRIVGC ED VV
Sbjct: 44 ATGLEREIMLAAKKGLDPYNVLAPKGASGTREDPNLVPSISNKRIVGCIC--EEDNTSVV 101
Query: 127 WFWLEKGKPHECPVCSQYFVL 147
WFWL KG+ CP C ++ L
Sbjct: 102 WFWLHKGEAQRCPRCGAHYKL 122
>sp|Q5S3G4|COX5B_PIG Cytochrome c oxidase subunit 5B, mitochondrial OS=Sus scrofa
GN=COX5B PE=2 SV=1
Length = 129
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 67 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 126
ATG ERE + A +G + I P GTK+ P +V S +KRIVGC ED V+
Sbjct: 44 ATGLEREVMMAARKGLDPYNILAPKAASGTKEDPNLVPSITNKRIVGCIC--EEDNSTVI 101
Query: 127 WFWLEKGKPHECPVCSQYFVL 147
WFW+ KG+ CP C ++ L
Sbjct: 102 WFWVHKGETQRCPSCGTHYKL 122
>sp|P19536|COX5B_MOUSE Cytochrome c oxidase subunit 5B, mitochondrial OS=Mus musculus
GN=Cox5b PE=1 SV=1
Length = 128
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 8/123 (6%)
Query: 31 IASRSLISRPLFASRHFSADSAGTSVKKRVEDVNPV------ATGHEREELEAELEGKNI 84
+ASR L A++ + G +V + + V ATG ERE + A +G +
Sbjct: 1 MASRLLRGVGALAAQALRRTARGAAVTRSMASGGGVPTDEEQATGLEREIMIAAQKGLDP 60
Query: 85 LEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQY 144
+ P GTK+ P +V S +KRIVGC E D V+WFWL KG+ CP C +
Sbjct: 61 YNMLPPKAASGTKEDPNLVPSISNKRIVGCICEE--DNCTVIWFWLHKGESQRCPNCGTH 118
Query: 145 FVL 147
+ L
Sbjct: 119 YKL 121
>sp|P12075|COX5B_RAT Cytochrome c oxidase subunit 5B, mitochondrial OS=Rattus norvegicus
GN=Cox5b PE=1 SV=2
Length = 129
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 67 ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 126
ATG ERE + A G + + P GTK+ P +V S +KRIVGC ED V+
Sbjct: 44 ATGLEREIMIAAQRGLDPYNMLPPKAASGTKEDPNLVPSVSNKRIVGCIC--EEDNCTVI 101
Query: 127 WFWLEKGKPHECPVCSQYFVL 147
WFWL +G+ CP C ++ L
Sbjct: 102 WFWLHQGESQRCPNCGTHYKL 122
>sp|P29505|COX5_DICDI Cytochrome c oxidase subunit 5 OS=Dictyostelium discoideum GN=cxeA
PE=1 SV=3
Length = 120
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 91 TGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVV 150
TG FGT +P +V+S + RIV C GG+GE EHD+++ + + KP C C Q F L+ +
Sbjct: 53 TGAFGTLKSPVIVESIFHSRIVACEGGDGE-EHDILFHTVAEKKPTICLDCGQVFKLKHI 111
Query: 151 GPGG 154
G
Sbjct: 112 SSEG 115
>sp|P06809|COX4_NEUCR Cytochrome c oxidase subunit 4, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=cox-4 PE=3 SV=2
Length = 186
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 67 ATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDV 125
ATG ER E+ ++EG ++ ++ GT + P V+S D++ GC G D H+V
Sbjct: 70 ATGLERLEILGKMEGVDVFDMKPLDASRRGTMENPISVRSAGDEQYAGCTGFPA-DSHNV 128
Query: 126 VWFWLEKGKPHE-CPVCSQYFVLEVVGP 152
+W + + +P E CP C + ++ VGP
Sbjct: 129 IWLTMTRERPVERCPECGNVYKMDYVGP 156
>sp|P79010|COX4_SCHPO Cytochrome c oxidase subunit 4, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cox4 PE=2 SV=1
Length = 164
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 67 ATGHEREELEAELEGKNILEID-YPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDV 125
ATG ER EL +EL G++ ++ GT P +V S R +GC G H++
Sbjct: 72 ATGLERYELLSELSGRDAFDMKPLDASRKGTLTDPIMVTSLDPYRHIGCTGSP-SGSHNL 130
Query: 126 VWFWLEKGKPHECPVCSQYFVLEVVG 151
+W + K K CP C + L+ +G
Sbjct: 131 IWMTVYKDKLRRCPECGSVYKLKFMG 156
>sp|P04037|COX4_YEAST Cytochrome c oxidase subunit 4, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COX4 PE=1
SV=1
Length = 155
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 17/103 (16%)
Query: 68 TGHEREELEAELEGKNILEIDYPTGPF-----GTKDAPAVVKSYYDKRIVGCPGGEGEDE 122
TG R EL +LEG ++ + T P GT P +++SY D R VGC G
Sbjct: 64 TGLARLELLGKLEGIDVFD----TKPLDSSRKGTMKDPIIIESYDDYRYVGCTGSPA-GS 118
Query: 123 HDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHGDDDHH 165
H ++W + C C + L P G +DDHH
Sbjct: 119 HTIMWLKPTVNEVARCWECGSVYKLN-------PVGVPNDDHH 154
>sp|P80499|COX5B_SOLTU Cytochrome c oxidase subunit 5B, mitochondrial (Fragment)
OS=Solanum tuberosum PE=1 SV=1
Length = 28
Score = 37.0 bits (84), Expect = 0.054, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 51 SAGTSVKKRVEDVNPVATGHEREELEAE 78
+ +V K+VEDV P+ATGHERE L A+
Sbjct: 1 TVSENVVKKVEDVMPIATGHEREXLXAQ 28
>sp|A3QF43|ASTB_SHELP N-succinylarginine dihydrolase OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=astB PE=3 SV=1
Length = 445
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 66 VATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSY-YDKRIVGCPGGEGE---- 120
V T + E++ + GK + I+ PT G +DA VKSY ++ +IV P GE
Sbjct: 270 VDTQKKLAEIQDKFNGKELHFIEVPTAKVGIQDA---VKSYLFNTQIVTLPNGEMAIIAP 326
Query: 121 ---DEHDVVWFWLEKGKPHECPVCS-QYF-VLEVVGPGGPP 156
E++ V+ +L + P+ YF V + + GG P
Sbjct: 327 TNCQENEAVYAYLNELVTLGTPIKQVHYFDVKQSMQNGGGP 367
>sp|Q9JM62|REEP6_MOUSE Receptor expression-enhancing protein 6 OS=Mus musculus GN=Reep6
PE=2 SV=1
Length = 201
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 16 ALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSAGTSVKKRVEDVNPVATGHEREEL 75
A + P N ++ + RPLF H + DSA + + R D +A G R+ L
Sbjct: 118 AFLLFCMTPGPWNGALLLYHRVIRPLFLKHHMALDSAASQLSGRALD---LAAGITRDVL 174
Query: 76 EAELEGKNILEIDYPTGPFGTKDAPAVVK 104
+A G+ ++ P T + PA ++
Sbjct: 175 QALARGRALVT------PASTSEPPAALE 197
>sp|Q5XI60|REEP6_RAT Receptor expression-enhancing protein 6 OS=Rattus norvegicus
GN=Reep6 PE=2 SV=1
Length = 211
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 16 ALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSAGTSVKKRVEDVNPVATGHEREEL 75
A + P N ++ + RPLF H + DSA + + R D +A G R+ L
Sbjct: 118 AFLLFCMTPGPWNGALLLYHRVIRPLFLKHHVALDSAASQLSGRALD---IAAGITRDVL 174
Query: 76 EAELEGKNIL 85
+A G+ ++
Sbjct: 175 QALARGRTLV 184
>sp|A4IZM7|GLMU_FRATW Bifunctional protein GlmU OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=glmU PE=3 SV=1
Length = 455
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 45 RHFSADSAGTSVKKRVEDVNP----VATGHEREELEAELEGKNILEIDYPTGPFGT 96
+ +A + V VE +NP V TGH +E++E L+G+NI + Y GT
Sbjct: 25 QTLAAKTLIEHVVSSVEKLNPDNIVVVTGHLKEQVEDALQGRNITFV-YQQQQLGT 79
>sp|Q5NHR0|GLMU_FRATT Bifunctional protein GlmU OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=glmU PE=3 SV=1
Length = 455
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 45 RHFSADSAGTSVKKRVEDVNP----VATGHEREELEAELEGKNILEIDYPTGPFGT 96
+ +A + V VE +NP V TGH +E++E L+G+NI + Y GT
Sbjct: 25 QTLAAKTLIEHVVSSVEKLNPDNIVVVTGHLKEQVEDALQGRNITFV-YQQQQLGT 79
>sp|B2SFB5|GLMU_FRATM Bifunctional protein GlmU OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=glmU PE=3 SV=1
Length = 455
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 45 RHFSADSAGTSVKKRVEDVNP----VATGHEREELEAELEGKNILEIDYPTGPFGT 96
+ +A + V VE +NP V TGH +E++E L+G+NI + Y GT
Sbjct: 25 QTLAAKTLIEHVVSSVEKLNPDNIVVVTGHLKEQVEDALQGRNITFV-YQQQQLGT 79
>sp|Q2A4X7|GLMU_FRATH Bifunctional protein GlmU OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=glmU PE=3 SV=1
Length = 455
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 45 RHFSADSAGTSVKKRVEDVNP----VATGHEREELEAELEGKNILEIDYPTGPFGT 96
+ +A + V VE +NP V TGH +E++E L+G+NI + Y GT
Sbjct: 25 QTLAAKTLIEHVVSSVEKLNPDNIVVVTGHLKEQVEDALQGRNITFV-YQQQQLGT 79
>sp|A7NAF3|GLMU_FRATF Bifunctional protein GlmU OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=glmU PE=3 SV=1
Length = 455
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 45 RHFSADSAGTSVKKRVEDVNP----VATGHEREELEAELEGKNILEIDYPTGPFGT 96
+ +A + V VE +NP V TGH +E++E L+G+NI + Y GT
Sbjct: 25 QTLAAKTLIEHVVSSVEKLNPDNIVVVTGHLKEQVEDALQGRNITFV-YQQQQLGT 79
>sp|A0Q565|GLMU_FRATN Bifunctional protein GlmU OS=Francisella tularensis subsp.
novicida (strain U112) GN=glmU PE=3 SV=1
Length = 455
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 45 RHFSADSAGTSVKKRVEDVNP----VATGHEREELEAELEGKNILEIDYPTGPFGT 96
+ +A + V VE +NP V TGH +E++E L+G+NI + Y GT
Sbjct: 25 QTLAAKTLIEHVVSSVEKLNPDNIVVVTGHLKEQVEDALQGRNITFV-YQQQQLGT 79
>sp|Q0BN96|GLMU_FRATO Bifunctional protein GlmU OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=glmU PE=3 SV=1
Length = 455
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 45 RHFSADSAGTSVKKRVEDVNP----VATGHEREELEAELEGKNILEIDYPTGPFGT 96
+ +A + V VE +NP V TGH +E++E L+G+NI + Y GT
Sbjct: 25 QTLAAKTLIEHVVSSVEKLNPDNIVVVTGHLKEQVEDALQGRNITFV-YQQQQLGT 79
>sp|Q14J62|GLMU_FRAT1 Bifunctional protein GlmU OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=glmU PE=3 SV=1
Length = 455
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 45 RHFSADSAGTSVKKRVEDVNP----VATGHEREELEAELEGKNILEIDYPTGPFGT 96
+ +A + V VE +NP V TGH +E++E L+G+NI + Y GT
Sbjct: 25 QTLAAKTLIEHVVSSVEKLNPDNIVVVTGHLKEQVEDALQGRNITFV-YQQQQLGT 79
>sp|Q19724|NDUS6_CAEEL Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,
mitochondrial OS=Caenorhabditis elegans GN=nduf-6 PE=3
SV=1
Length = 140
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 108 DKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYF 145
DKR+V C GG H V+ L+K H C C F
Sbjct: 85 DKRVVFCDGGHPALGHPKVYINLDKPGVHACGYCGNRF 122
>sp|B5EEE6|SYE_GEOBB Glutamate--tRNA ligase OS=Geobacter bemidjiensis (strain Bem / ATCC
BAA-1014 / DSM 16622) GN=gltX PE=3 SV=1
Length = 467
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 59 RVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRI 111
R+ED + + +E ++A LEG L +D+ GPF D + K Y +K I
Sbjct: 41 RIEDTDVARS--TQESVDAILEGMTWLGLDWDEGPFYQSDNFPLYKEYVEKLI 91
>sp|Q5TA31|RN187_HUMAN E3 ubiquitin-protein ligase RNF187 OS=Homo sapiens GN=RNF187 PE=1
SV=2
Length = 235
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 125 VVWFWLEKGKPHECPVCSQYFVLEVVGPGGPP 156
VV FW E+ P CP C+ V PG PP
Sbjct: 36 VVRFWAEEDGPFPCPECADDCWQRAVEPGRPP 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,360,472
Number of Sequences: 539616
Number of extensions: 3524488
Number of successful extensions: 8091
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 8059
Number of HSP's gapped (non-prelim): 42
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)